Multiple sequence alignment - TraesCS2D01G146200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G146200 chr2D 100.000 4905 0 0 1 4905 87756508 87761412 0.000000e+00 9058.0
1 TraesCS2D01G146200 chr2D 73.818 275 55 14 4574 4837 532158565 532158297 5.230000e-15 93.5
2 TraesCS2D01G146200 chr2B 92.584 4207 233 46 1 4158 140846544 140850720 0.000000e+00 5967.0
3 TraesCS2D01G146200 chr2A 91.796 2328 157 23 2339 4657 88014298 88016600 0.000000e+00 3210.0
4 TraesCS2D01G146200 chr2A 90.525 1467 71 23 1 1424 88012259 88013700 0.000000e+00 1877.0
5 TraesCS2D01G146200 chr2A 92.149 484 36 2 1609 2091 88013723 88014205 0.000000e+00 682.0
6 TraesCS2D01G146200 chr2A 94.737 38 2 0 2305 2342 88014212 88014249 5.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G146200 chr2D 87756508 87761412 4904 False 9058.0 9058 100.00000 1 4905 1 chr2D.!!$F1 4904
1 TraesCS2D01G146200 chr2B 140846544 140850720 4176 False 5967.0 5967 92.58400 1 4158 1 chr2B.!!$F1 4157
2 TraesCS2D01G146200 chr2A 88012259 88016600 4341 False 1457.3 3210 92.30175 1 4657 4 chr2A.!!$F1 4656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 744 0.249676 GTTCGGGAGAGGAAAGGGAC 59.750 60.0 0.0 0.0 41.75 4.46 F
727 748 0.252742 GGGAGAGGAAAGGGACCAGA 60.253 60.0 0.0 0.0 0.00 3.86 F
1143 1194 0.317103 CGATCTACGTGAGGAAGCCG 60.317 60.0 0.0 0.0 37.22 5.52 F
2215 2277 0.393808 TTAATGGGGAAGCCAGCGAC 60.394 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1823 0.953471 TGGACAAACGGCCATTCTCG 60.953 55.0 2.24 0.00 0.00 4.04 R
2205 2267 2.676163 AAAAGGTCCGTCGCTGGCTT 62.676 55.0 0.00 0.00 0.00 4.35 R
3045 3164 2.143876 ACCAGTGCCCATTTATCCAC 57.856 50.0 0.00 0.00 0.00 4.02 R
4198 4334 0.249615 GAGGATGCAGCGCTGACATA 60.250 55.0 40.21 22.07 31.15 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.785512 AGAGCAGCGTTCTCGGCG 62.786 66.667 0.00 0.00 35.79 6.46
238 239 2.203788 TTGGCGTCCTCACCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
239 240 2.232298 CTTGGCGTCCTCACCCTCTC 62.232 65.000 0.00 0.00 0.00 3.20
240 241 3.462678 GGCGTCCTCACCCTCTCC 61.463 72.222 0.00 0.00 0.00 3.71
241 242 2.363147 GCGTCCTCACCCTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
244 245 1.388531 GTCCTCACCCTCTCCTCCA 59.611 63.158 0.00 0.00 0.00 3.86
248 249 0.762461 CTCACCCTCTCCTCCATCCC 60.762 65.000 0.00 0.00 0.00 3.85
257 258 0.343372 TCCTCCATCCCTAGCCTTGT 59.657 55.000 0.00 0.00 0.00 3.16
666 680 2.056223 GTCGGGGTTCGGGATCTCA 61.056 63.158 0.00 0.00 39.77 3.27
707 721 3.107017 GCAGGGTTTGCGAATGTTC 57.893 52.632 0.00 0.00 44.09 3.18
721 742 0.912486 ATGTTCGGGAGAGGAAAGGG 59.088 55.000 0.00 0.00 41.75 3.95
723 744 0.249676 GTTCGGGAGAGGAAAGGGAC 59.750 60.000 0.00 0.00 41.75 4.46
724 745 0.908180 TTCGGGAGAGGAAAGGGACC 60.908 60.000 0.00 0.00 41.75 4.46
726 747 1.617947 CGGGAGAGGAAAGGGACCAG 61.618 65.000 0.00 0.00 0.00 4.00
727 748 0.252742 GGGAGAGGAAAGGGACCAGA 60.253 60.000 0.00 0.00 0.00 3.86
728 749 1.657804 GGAGAGGAAAGGGACCAGAA 58.342 55.000 0.00 0.00 0.00 3.02
729 750 1.985895 GGAGAGGAAAGGGACCAGAAA 59.014 52.381 0.00 0.00 0.00 2.52
730 751 2.578480 GGAGAGGAAAGGGACCAGAAAT 59.422 50.000 0.00 0.00 0.00 2.17
862 901 4.189580 GCCTCCGCAATGGGCCTA 62.190 66.667 4.53 0.00 39.96 3.93
895 935 4.096532 GGGAGCAGCCTATTGAGTTTTTAC 59.903 45.833 0.00 0.00 36.66 2.01
922 962 2.683859 GGGTTCGTTAACGGGCTGC 61.684 63.158 26.51 12.45 40.29 5.25
926 966 0.800012 TTCGTTAACGGGCTGCAATC 59.200 50.000 26.51 0.00 40.29 2.67
930 970 1.130561 GTTAACGGGCTGCAATCACTC 59.869 52.381 0.50 0.00 0.00 3.51
962 1002 6.425417 GGTACTACGTACTACTAGATTGGGAC 59.575 46.154 10.83 0.00 38.85 4.46
1143 1194 0.317103 CGATCTACGTGAGGAAGCCG 60.317 60.000 0.00 0.00 37.22 5.52
1389 1446 1.270414 ACCAGGTCCTGATGCCTCTG 61.270 60.000 21.23 3.23 32.44 3.35
1448 1505 4.333690 ACCTCGACTGTGATACTGTACTT 58.666 43.478 0.00 0.00 30.17 2.24
1497 1554 5.628797 TTATGGCTTGTATGGATGTCTCA 57.371 39.130 0.00 0.00 0.00 3.27
1499 1556 4.508551 TGGCTTGTATGGATGTCTCATT 57.491 40.909 0.00 0.00 0.00 2.57
1501 1558 4.641541 TGGCTTGTATGGATGTCTCATTTG 59.358 41.667 0.00 0.00 0.00 2.32
1510 1567 5.069318 TGGATGTCTCATTTGTGCTAACAA 58.931 37.500 0.00 0.00 44.59 2.83
1523 1580 5.361427 TGTGCTAACAACTTACTGTAGCAA 58.639 37.500 5.32 0.00 37.51 3.91
1524 1581 5.995282 TGTGCTAACAACTTACTGTAGCAAT 59.005 36.000 5.32 0.00 37.51 3.56
1564 1621 5.100344 TGAAATGGTATGGTTAGCGGTTA 57.900 39.130 0.00 0.00 0.00 2.85
1580 1637 2.410939 GGTTAGTTTGACCGTGGTCTC 58.589 52.381 19.17 10.08 44.80 3.36
1598 1655 2.093658 TCTCCGCAGATTTAACTGGTCC 60.094 50.000 0.00 0.00 38.22 4.46
1681 1742 3.938963 GCACCGAATCTAGGTTTTCATCA 59.061 43.478 0.00 0.00 40.59 3.07
1696 1757 8.880244 AGGTTTTCATCATACTATATAGTGCCA 58.120 33.333 23.09 6.02 37.10 4.92
1737 1799 7.500629 AAATTCTCATTGCTTCCCCTTTATT 57.499 32.000 0.00 0.00 0.00 1.40
1745 1807 4.016444 TGCTTCCCCTTTATTGTGTCATC 58.984 43.478 0.00 0.00 0.00 2.92
1761 1823 5.409520 TGTGTCATCAGCAGTTCTAAATGAC 59.590 40.000 9.24 9.24 42.10 3.06
1770 1832 4.494855 GCAGTTCTAAATGACGAGAATGGC 60.495 45.833 0.00 0.00 34.34 4.40
1833 1895 2.563261 ATGCAGTCCATCAGCATAGG 57.437 50.000 0.00 0.00 45.15 2.57
1871 1933 2.579410 AACGGGTAGTTCATTGCCTT 57.421 45.000 0.00 0.00 39.16 4.35
1885 1947 4.943705 TCATTGCCTTTCTGTGGAGAATAC 59.056 41.667 0.00 0.00 38.05 1.89
1912 1974 6.734137 CACTTTACAGTTGAATTTGCACCTA 58.266 36.000 0.00 0.00 0.00 3.08
1957 2019 7.380602 CAGAGGTTGAAAATGAAACTAAAGCAG 59.619 37.037 0.00 0.00 0.00 4.24
2007 2069 9.248291 GCACAATATAAGTTGGTTTTGATATGG 57.752 33.333 0.00 0.00 33.40 2.74
2015 2077 7.784633 AGTTGGTTTTGATATGGTTTTGTTG 57.215 32.000 0.00 0.00 0.00 3.33
2106 2168 3.694072 GGGTACAAATATCAGTGCTTGCA 59.306 43.478 0.00 0.00 0.00 4.08
2215 2277 0.393808 TTAATGGGGAAGCCAGCGAC 60.394 55.000 0.00 0.00 0.00 5.19
2243 2306 3.586543 TGGTGCCACCAGGATTCA 58.413 55.556 13.83 0.00 44.79 2.57
2254 2317 2.897350 GGATTCAAGCCCTCGCCG 60.897 66.667 0.00 0.00 34.57 6.46
2429 2546 4.563061 GCCTCAATATGGCCAATGAAATC 58.437 43.478 10.96 3.45 44.32 2.17
2583 2700 3.125316 TGTTCGTGTAGGTTAGTTGTGC 58.875 45.455 0.00 0.00 0.00 4.57
2801 2919 3.513680 TGCTGCAATGGCTGAATTTAG 57.486 42.857 0.00 0.00 41.06 1.85
3124 3243 1.401905 CGGCCTTTTACAATGCCTCTC 59.598 52.381 0.00 0.00 40.62 3.20
3401 3520 5.739752 TTGCACCTCAATATGATTTCTCG 57.260 39.130 0.00 0.00 0.00 4.04
3464 3583 4.986467 CCCAATACTGGACTGGGC 57.014 61.111 0.00 0.00 46.92 5.36
3468 3587 1.683011 CCAATACTGGACTGGGCCAAG 60.683 57.143 8.04 5.25 46.92 3.61
3561 3680 3.135994 GGCTGTAGAAACCGTTCTGAAA 58.864 45.455 0.00 0.00 44.12 2.69
3580 3699 6.208007 TCTGAAAGATGCAAATGATTGTGAGT 59.792 34.615 0.00 0.00 38.67 3.41
3585 3704 1.987770 GCAAATGATTGTGAGTTGGCG 59.012 47.619 0.00 0.00 38.85 5.69
3633 3752 2.785857 CCATTCCCTGGTAATCCCTCTT 59.214 50.000 0.00 0.00 40.49 2.85
3773 3896 6.763355 TCTTCTCTTTGCTTCTGTCTTATGT 58.237 36.000 0.00 0.00 0.00 2.29
3826 3949 1.460699 GGGCTTGGTTGAAGGAGGT 59.539 57.895 0.00 0.00 31.56 3.85
3912 4035 4.469657 TCATGGCTGAAGTAACCTTTTGT 58.530 39.130 0.00 0.00 0.00 2.83
3915 4038 4.274147 TGGCTGAAGTAACCTTTTGTTCA 58.726 39.130 0.00 0.00 38.42 3.18
3916 4039 4.338118 TGGCTGAAGTAACCTTTTGTTCAG 59.662 41.667 6.11 6.11 44.58 3.02
3935 4070 7.644490 TGTTCAGTAATCTGCGTAATTGTTTT 58.356 30.769 0.00 0.00 41.10 2.43
3936 4071 7.801315 TGTTCAGTAATCTGCGTAATTGTTTTC 59.199 33.333 0.00 0.00 41.10 2.29
3939 4074 6.249260 CAGTAATCTGCGTAATTGTTTTCTGC 59.751 38.462 0.00 0.00 34.79 4.26
4013 4149 6.638468 GCAGATGGTTAAGAGAAAACAAAGTG 59.362 38.462 0.00 0.00 27.97 3.16
4048 4184 2.608752 GGTGCTGATGCTGAACTTTTGG 60.609 50.000 0.00 0.00 40.48 3.28
4107 4243 4.980339 ATGAAAACCCAGCATCCTTTTT 57.020 36.364 0.00 0.00 0.00 1.94
4138 4274 3.105283 GTGGTCTCTGGTTATGTAGGGT 58.895 50.000 0.00 0.00 0.00 4.34
4175 4311 1.615392 GCAGAATTCTGGCTTGGTGTT 59.385 47.619 31.41 0.00 43.94 3.32
4215 4351 0.531532 ACTATGTCAGCGCTGCATCC 60.532 55.000 34.59 22.70 32.53 3.51
4239 4375 2.317609 CGTTTCGGACCAGGCTGTG 61.318 63.158 14.43 7.58 0.00 3.66
4267 4403 1.796617 GCTGCCGATTTCTGAATGTGC 60.797 52.381 0.00 0.00 0.00 4.57
4300 4436 9.507280 CTGTAGCACAATTTTCCAGTTTATATG 57.493 33.333 0.00 0.00 0.00 1.78
4302 4438 9.722056 GTAGCACAATTTTCCAGTTTATATGAG 57.278 33.333 0.00 0.00 0.00 2.90
4303 4439 8.579850 AGCACAATTTTCCAGTTTATATGAGA 57.420 30.769 0.00 0.00 0.00 3.27
4304 4440 9.193806 AGCACAATTTTCCAGTTTATATGAGAT 57.806 29.630 0.00 0.00 0.00 2.75
4393 4529 1.039068 CTGGTGTGCCATGGTTTTCA 58.961 50.000 14.67 0.00 45.05 2.69
4395 4531 1.411977 TGGTGTGCCATGGTTTTCAAG 59.588 47.619 14.67 0.00 40.46 3.02
4396 4532 1.412343 GGTGTGCCATGGTTTTCAAGT 59.588 47.619 14.67 0.00 34.09 3.16
4399 4535 4.262420 GGTGTGCCATGGTTTTCAAGTTAT 60.262 41.667 14.67 0.00 34.09 1.89
4400 4536 4.923281 GTGTGCCATGGTTTTCAAGTTATC 59.077 41.667 14.67 0.00 0.00 1.75
4401 4537 4.832266 TGTGCCATGGTTTTCAAGTTATCT 59.168 37.500 14.67 0.00 0.00 1.98
4411 4547 6.201425 GGTTTTCAAGTTATCTGTGTGTACGA 59.799 38.462 0.00 0.00 0.00 3.43
4416 4552 5.557891 AGTTATCTGTGTGTACGACCTAC 57.442 43.478 0.00 0.00 0.00 3.18
4419 4555 3.909776 TCTGTGTGTACGACCTACTTG 57.090 47.619 0.00 0.00 0.00 3.16
4420 4556 3.216800 TCTGTGTGTACGACCTACTTGT 58.783 45.455 0.00 0.00 0.00 3.16
4432 4568 5.007332 ACGACCTACTTGTTTGATGTGAAAC 59.993 40.000 0.00 0.00 36.53 2.78
4455 4591 2.415608 CCGAGCGCCTCCTAGTTCA 61.416 63.158 2.29 0.00 0.00 3.18
4461 4597 0.902531 CGCCTCCTAGTTCAAGGGAA 59.097 55.000 0.00 0.00 37.24 3.97
4483 4619 7.145985 GGAAAAGTGGAAGAAAAATGTAGGAC 58.854 38.462 0.00 0.00 0.00 3.85
4554 4690 3.010200 AGGGGCAAAGAAAGCATAGAG 57.990 47.619 0.00 0.00 0.00 2.43
4556 4692 3.010584 AGGGGCAAAGAAAGCATAGAGAA 59.989 43.478 0.00 0.00 0.00 2.87
4557 4693 3.956848 GGGGCAAAGAAAGCATAGAGAAT 59.043 43.478 0.00 0.00 0.00 2.40
4558 4694 4.403752 GGGGCAAAGAAAGCATAGAGAATT 59.596 41.667 0.00 0.00 0.00 2.17
4613 4749 4.081420 AGCACAGGAAATCTAACATCGACT 60.081 41.667 0.00 0.00 0.00 4.18
4618 4754 6.380274 ACAGGAAATCTAACATCGACTAGGAA 59.620 38.462 0.00 0.00 0.00 3.36
4650 4786 6.286174 TGAATTTTCATGTGCACGAAGAACG 61.286 40.000 13.13 0.00 39.05 3.95
4663 4799 3.858247 CGAAGAACGGGACTAAAATCCT 58.142 45.455 0.00 0.00 38.95 3.24
4664 4800 4.251268 CGAAGAACGGGACTAAAATCCTT 58.749 43.478 0.00 0.00 38.95 3.36
4665 4801 4.092968 CGAAGAACGGGACTAAAATCCTTG 59.907 45.833 0.00 0.00 38.95 3.61
4666 4802 3.951663 AGAACGGGACTAAAATCCTTGG 58.048 45.455 0.00 0.00 38.95 3.61
4667 4803 3.329814 AGAACGGGACTAAAATCCTTGGT 59.670 43.478 0.00 0.00 38.95 3.67
4668 4804 3.067684 ACGGGACTAAAATCCTTGGTG 57.932 47.619 0.00 0.00 38.95 4.17
4669 4805 2.290705 ACGGGACTAAAATCCTTGGTGG 60.291 50.000 0.00 0.00 38.95 4.61
4670 4806 2.290705 CGGGACTAAAATCCTTGGTGGT 60.291 50.000 0.00 0.00 38.95 4.16
4671 4807 3.054948 CGGGACTAAAATCCTTGGTGGTA 60.055 47.826 0.00 0.00 38.95 3.25
4672 4808 4.384868 CGGGACTAAAATCCTTGGTGGTAT 60.385 45.833 0.00 0.00 38.95 2.73
4673 4809 4.887655 GGGACTAAAATCCTTGGTGGTATG 59.112 45.833 0.00 0.00 38.95 2.39
4674 4810 5.339695 GGGACTAAAATCCTTGGTGGTATGA 60.340 44.000 0.00 0.00 38.95 2.15
4675 4811 5.589050 GGACTAAAATCCTTGGTGGTATGAC 59.411 44.000 0.00 0.00 35.68 3.06
4676 4812 6.134535 ACTAAAATCCTTGGTGGTATGACA 57.865 37.500 0.00 0.00 37.07 3.58
4677 4813 6.548321 ACTAAAATCCTTGGTGGTATGACAA 58.452 36.000 0.00 0.00 37.07 3.18
4678 4814 5.722021 AAAATCCTTGGTGGTATGACAAC 57.278 39.130 0.00 0.00 37.07 3.32
4679 4815 4.380843 AATCCTTGGTGGTATGACAACA 57.619 40.909 0.00 0.00 36.01 3.33
4680 4816 4.591321 ATCCTTGGTGGTATGACAACAT 57.409 40.909 0.00 0.00 37.99 2.71
4681 4817 4.380843 TCCTTGGTGGTATGACAACATT 57.619 40.909 0.00 0.00 37.99 2.71
4682 4818 4.735369 TCCTTGGTGGTATGACAACATTT 58.265 39.130 0.00 0.00 37.99 2.32
4683 4819 5.144100 TCCTTGGTGGTATGACAACATTTT 58.856 37.500 0.00 0.00 37.99 1.82
4684 4820 6.307776 TCCTTGGTGGTATGACAACATTTTA 58.692 36.000 0.00 0.00 37.99 1.52
4685 4821 6.778069 TCCTTGGTGGTATGACAACATTTTAA 59.222 34.615 0.00 0.00 37.99 1.52
4686 4822 7.453126 TCCTTGGTGGTATGACAACATTTTAAT 59.547 33.333 0.00 0.00 37.99 1.40
4687 4823 8.093927 CCTTGGTGGTATGACAACATTTTAATT 58.906 33.333 0.00 0.00 37.99 1.40
4689 4825 9.915629 TTGGTGGTATGACAACATTTTAATTAC 57.084 29.630 0.00 0.00 37.99 1.89
4690 4826 9.078990 TGGTGGTATGACAACATTTTAATTACA 57.921 29.630 0.00 0.00 37.87 2.41
4691 4827 9.349145 GGTGGTATGACAACATTTTAATTACAC 57.651 33.333 0.00 0.00 37.87 2.90
4692 4828 9.900710 GTGGTATGACAACATTTTAATTACACA 57.099 29.630 0.00 0.00 37.87 3.72
4710 4846 9.719279 AATTACACATTTTTGTGCTTTGATTTG 57.281 25.926 6.04 0.00 43.13 2.32
4711 4847 6.981762 ACACATTTTTGTGCTTTGATTTGA 57.018 29.167 6.04 0.00 43.13 2.69
4712 4848 6.774084 ACACATTTTTGTGCTTTGATTTGAC 58.226 32.000 6.04 0.00 43.13 3.18
4713 4849 6.183360 ACACATTTTTGTGCTTTGATTTGACC 60.183 34.615 6.04 0.00 43.13 4.02
4714 4850 5.879223 ACATTTTTGTGCTTTGATTTGACCA 59.121 32.000 0.00 0.00 0.00 4.02
4715 4851 6.543100 ACATTTTTGTGCTTTGATTTGACCAT 59.457 30.769 0.00 0.00 0.00 3.55
4716 4852 5.987777 TTTTGTGCTTTGATTTGACCATG 57.012 34.783 0.00 0.00 0.00 3.66
4717 4853 4.669206 TTGTGCTTTGATTTGACCATGT 57.331 36.364 0.00 0.00 0.00 3.21
4718 4854 4.669206 TGTGCTTTGATTTGACCATGTT 57.331 36.364 0.00 0.00 0.00 2.71
4719 4855 5.021033 TGTGCTTTGATTTGACCATGTTT 57.979 34.783 0.00 0.00 0.00 2.83
4720 4856 6.154203 TGTGCTTTGATTTGACCATGTTTA 57.846 33.333 0.00 0.00 0.00 2.01
4721 4857 6.757237 TGTGCTTTGATTTGACCATGTTTAT 58.243 32.000 0.00 0.00 0.00 1.40
4722 4858 7.215789 TGTGCTTTGATTTGACCATGTTTATT 58.784 30.769 0.00 0.00 0.00 1.40
4723 4859 8.363390 TGTGCTTTGATTTGACCATGTTTATTA 58.637 29.630 0.00 0.00 0.00 0.98
4724 4860 8.863049 GTGCTTTGATTTGACCATGTTTATTAG 58.137 33.333 0.00 0.00 0.00 1.73
4725 4861 8.034215 TGCTTTGATTTGACCATGTTTATTAGG 58.966 33.333 0.00 0.00 0.00 2.69
4726 4862 8.250332 GCTTTGATTTGACCATGTTTATTAGGA 58.750 33.333 0.00 0.00 0.00 2.94
4733 4869 8.877864 TTGACCATGTTTATTAGGATTTCTGT 57.122 30.769 0.00 0.00 0.00 3.41
4734 4870 8.279970 TGACCATGTTTATTAGGATTTCTGTG 57.720 34.615 0.00 0.00 0.00 3.66
4735 4871 7.888021 TGACCATGTTTATTAGGATTTCTGTGT 59.112 33.333 0.00 0.00 0.00 3.72
4736 4872 8.650143 ACCATGTTTATTAGGATTTCTGTGTT 57.350 30.769 0.00 0.00 0.00 3.32
4737 4873 8.739972 ACCATGTTTATTAGGATTTCTGTGTTC 58.260 33.333 0.00 0.00 0.00 3.18
4738 4874 8.960591 CCATGTTTATTAGGATTTCTGTGTTCT 58.039 33.333 0.00 0.00 0.00 3.01
4741 4877 9.010029 TGTTTATTAGGATTTCTGTGTTCTTCC 57.990 33.333 0.00 0.00 0.00 3.46
4742 4878 7.843490 TTATTAGGATTTCTGTGTTCTTCCG 57.157 36.000 0.00 0.00 0.00 4.30
4743 4879 3.059352 AGGATTTCTGTGTTCTTCCGG 57.941 47.619 0.00 0.00 0.00 5.14
4744 4880 2.372172 AGGATTTCTGTGTTCTTCCGGT 59.628 45.455 0.00 0.00 0.00 5.28
4745 4881 3.146847 GGATTTCTGTGTTCTTCCGGTT 58.853 45.455 0.00 0.00 0.00 4.44
4746 4882 3.188667 GGATTTCTGTGTTCTTCCGGTTC 59.811 47.826 0.00 0.00 0.00 3.62
4747 4883 2.249844 TTCTGTGTTCTTCCGGTTCC 57.750 50.000 0.00 0.00 0.00 3.62
4748 4884 1.420430 TCTGTGTTCTTCCGGTTCCT 58.580 50.000 0.00 0.00 0.00 3.36
4749 4885 2.600790 TCTGTGTTCTTCCGGTTCCTA 58.399 47.619 0.00 0.00 0.00 2.94
4750 4886 3.170717 TCTGTGTTCTTCCGGTTCCTAT 58.829 45.455 0.00 0.00 0.00 2.57
4751 4887 4.346730 TCTGTGTTCTTCCGGTTCCTATA 58.653 43.478 0.00 0.00 0.00 1.31
4752 4888 4.773674 TCTGTGTTCTTCCGGTTCCTATAA 59.226 41.667 0.00 0.00 0.00 0.98
4753 4889 5.246656 TCTGTGTTCTTCCGGTTCCTATAAA 59.753 40.000 0.00 0.00 0.00 1.40
4754 4890 5.240121 TGTGTTCTTCCGGTTCCTATAAAC 58.760 41.667 0.00 0.00 0.00 2.01
4755 4891 5.012354 TGTGTTCTTCCGGTTCCTATAAACT 59.988 40.000 0.00 0.00 0.00 2.66
4756 4892 6.211184 TGTGTTCTTCCGGTTCCTATAAACTA 59.789 38.462 0.00 0.00 0.00 2.24
4757 4893 6.755607 GTGTTCTTCCGGTTCCTATAAACTAG 59.244 42.308 0.00 0.00 0.00 2.57
4758 4894 6.664816 TGTTCTTCCGGTTCCTATAAACTAGA 59.335 38.462 0.00 0.00 0.00 2.43
4759 4895 6.705863 TCTTCCGGTTCCTATAAACTAGAC 57.294 41.667 0.00 0.00 0.00 2.59
4760 4896 6.189859 TCTTCCGGTTCCTATAAACTAGACA 58.810 40.000 0.00 0.00 0.00 3.41
4761 4897 6.837568 TCTTCCGGTTCCTATAAACTAGACAT 59.162 38.462 0.00 0.00 0.00 3.06
4762 4898 6.401047 TCCGGTTCCTATAAACTAGACATG 57.599 41.667 0.00 0.00 0.00 3.21
4763 4899 4.989168 CCGGTTCCTATAAACTAGACATGC 59.011 45.833 0.00 0.00 0.00 4.06
4764 4900 5.452776 CCGGTTCCTATAAACTAGACATGCA 60.453 44.000 0.00 0.00 0.00 3.96
4765 4901 6.046593 CGGTTCCTATAAACTAGACATGCAA 58.953 40.000 0.00 0.00 0.00 4.08
4766 4902 6.201044 CGGTTCCTATAAACTAGACATGCAAG 59.799 42.308 0.00 0.00 0.00 4.01
4767 4903 6.017852 GGTTCCTATAAACTAGACATGCAAGC 60.018 42.308 0.00 0.00 0.00 4.01
4768 4904 6.485830 TCCTATAAACTAGACATGCAAGCT 57.514 37.500 0.00 0.00 0.00 3.74
4769 4905 6.283694 TCCTATAAACTAGACATGCAAGCTG 58.716 40.000 0.00 0.00 0.00 4.24
4770 4906 6.098266 TCCTATAAACTAGACATGCAAGCTGA 59.902 38.462 0.00 0.00 0.00 4.26
4771 4907 6.201806 CCTATAAACTAGACATGCAAGCTGAC 59.798 42.308 0.00 0.00 0.00 3.51
4772 4908 3.407424 AACTAGACATGCAAGCTGACA 57.593 42.857 0.00 0.00 0.00 3.58
4773 4909 3.407424 ACTAGACATGCAAGCTGACAA 57.593 42.857 0.00 0.00 0.00 3.18
4774 4910 3.743521 ACTAGACATGCAAGCTGACAAA 58.256 40.909 0.00 0.00 0.00 2.83
4775 4911 4.136796 ACTAGACATGCAAGCTGACAAAA 58.863 39.130 0.00 0.00 0.00 2.44
4776 4912 3.637998 AGACATGCAAGCTGACAAAAG 57.362 42.857 0.00 0.00 0.00 2.27
4777 4913 2.954318 AGACATGCAAGCTGACAAAAGT 59.046 40.909 0.00 0.00 0.00 2.66
4778 4914 3.382546 AGACATGCAAGCTGACAAAAGTT 59.617 39.130 0.00 0.00 0.00 2.66
4779 4915 4.114794 GACATGCAAGCTGACAAAAGTTT 58.885 39.130 0.00 0.00 0.00 2.66
4780 4916 4.114794 ACATGCAAGCTGACAAAAGTTTC 58.885 39.130 0.00 0.00 0.00 2.78
4781 4917 4.142093 ACATGCAAGCTGACAAAAGTTTCT 60.142 37.500 0.00 0.00 0.00 2.52
4782 4918 4.454728 TGCAAGCTGACAAAAGTTTCTT 57.545 36.364 0.00 0.00 0.00 2.52
4783 4919 4.819769 TGCAAGCTGACAAAAGTTTCTTT 58.180 34.783 0.00 0.00 0.00 2.52
4784 4920 4.626604 TGCAAGCTGACAAAAGTTTCTTTG 59.373 37.500 0.00 0.00 41.24 2.77
4786 4922 5.120674 GCAAGCTGACAAAAGTTTCTTTGTT 59.879 36.000 3.45 0.00 46.84 2.83
4787 4923 6.347644 GCAAGCTGACAAAAGTTTCTTTGTTT 60.348 34.615 3.45 0.00 46.84 2.83
4788 4924 7.575365 CAAGCTGACAAAAGTTTCTTTGTTTT 58.425 30.769 3.45 0.00 46.84 2.43
4789 4925 7.728847 AGCTGACAAAAGTTTCTTTGTTTTT 57.271 28.000 3.45 0.00 46.84 1.94
4790 4926 7.796838 AGCTGACAAAAGTTTCTTTGTTTTTC 58.203 30.769 3.45 0.00 46.84 2.29
4791 4927 7.440856 AGCTGACAAAAGTTTCTTTGTTTTTCA 59.559 29.630 3.45 0.00 46.84 2.69
4792 4928 7.741652 GCTGACAAAAGTTTCTTTGTTTTTCAG 59.258 33.333 3.45 7.06 46.84 3.02
4793 4929 8.655651 TGACAAAAGTTTCTTTGTTTTTCAGT 57.344 26.923 3.45 0.00 46.84 3.41
4794 4930 8.760569 TGACAAAAGTTTCTTTGTTTTTCAGTC 58.239 29.630 3.45 0.00 46.84 3.51
4795 4931 8.655651 ACAAAAGTTTCTTTGTTTTTCAGTCA 57.344 26.923 0.00 0.00 45.10 3.41
4796 4932 9.271828 ACAAAAGTTTCTTTGTTTTTCAGTCAT 57.728 25.926 0.00 0.00 45.10 3.06
4800 4936 8.831715 AGTTTCTTTGTTTTTCAGTCATTTGT 57.168 26.923 0.00 0.00 0.00 2.83
4801 4937 9.271828 AGTTTCTTTGTTTTTCAGTCATTTGTT 57.728 25.926 0.00 0.00 0.00 2.83
4802 4938 9.877137 GTTTCTTTGTTTTTCAGTCATTTGTTT 57.123 25.926 0.00 0.00 0.00 2.83
4805 4941 9.875675 TCTTTGTTTTTCAGTCATTTGTTTTTG 57.124 25.926 0.00 0.00 0.00 2.44
4806 4942 8.499514 TTTGTTTTTCAGTCATTTGTTTTTGC 57.500 26.923 0.00 0.00 0.00 3.68
4807 4943 6.302615 TGTTTTTCAGTCATTTGTTTTTGCG 58.697 32.000 0.00 0.00 0.00 4.85
4808 4944 4.513000 TTTCAGTCATTTGTTTTTGCGC 57.487 36.364 0.00 0.00 0.00 6.09
4809 4945 3.156511 TCAGTCATTTGTTTTTGCGCA 57.843 38.095 5.66 5.66 0.00 6.09
4810 4946 3.715495 TCAGTCATTTGTTTTTGCGCAT 58.285 36.364 12.75 0.00 0.00 4.73
4811 4947 3.490155 TCAGTCATTTGTTTTTGCGCATG 59.510 39.130 12.75 3.50 0.00 4.06
4812 4948 2.221517 AGTCATTTGTTTTTGCGCATGC 59.778 40.909 12.75 7.91 43.20 4.06
4827 4963 4.222114 GCGCATGCATTACTTCTTATTCC 58.778 43.478 19.57 0.00 42.15 3.01
4828 4964 4.023707 GCGCATGCATTACTTCTTATTCCT 60.024 41.667 19.57 0.00 42.15 3.36
4829 4965 5.446709 CGCATGCATTACTTCTTATTCCTG 58.553 41.667 19.57 0.00 0.00 3.86
4830 4966 5.008019 CGCATGCATTACTTCTTATTCCTGT 59.992 40.000 19.57 0.00 0.00 4.00
4831 4967 6.204359 GCATGCATTACTTCTTATTCCTGTG 58.796 40.000 14.21 0.00 0.00 3.66
4832 4968 6.183360 GCATGCATTACTTCTTATTCCTGTGT 60.183 38.462 14.21 0.00 0.00 3.72
4833 4969 7.629222 GCATGCATTACTTCTTATTCCTGTGTT 60.629 37.037 14.21 0.00 0.00 3.32
4834 4970 7.759489 TGCATTACTTCTTATTCCTGTGTTT 57.241 32.000 0.00 0.00 0.00 2.83
4835 4971 8.177119 TGCATTACTTCTTATTCCTGTGTTTT 57.823 30.769 0.00 0.00 0.00 2.43
4836 4972 8.637986 TGCATTACTTCTTATTCCTGTGTTTTT 58.362 29.630 0.00 0.00 0.00 1.94
4860 4996 9.813446 TTTTCTATTCCTACGTTCTTAAGATCC 57.187 33.333 5.89 0.00 0.00 3.36
4861 4997 8.529424 TTCTATTCCTACGTTCTTAAGATCCA 57.471 34.615 5.89 0.00 0.00 3.41
4862 4998 8.529424 TCTATTCCTACGTTCTTAAGATCCAA 57.471 34.615 5.89 0.00 0.00 3.53
4863 4999 8.411683 TCTATTCCTACGTTCTTAAGATCCAAC 58.588 37.037 5.89 0.33 0.00 3.77
4864 5000 4.990257 TCCTACGTTCTTAAGATCCAACG 58.010 43.478 20.44 20.44 45.57 4.10
4865 5001 4.701651 TCCTACGTTCTTAAGATCCAACGA 59.298 41.667 26.11 13.41 43.39 3.85
4866 5002 5.183713 TCCTACGTTCTTAAGATCCAACGAA 59.816 40.000 26.11 11.16 43.39 3.85
4867 5003 6.040878 CCTACGTTCTTAAGATCCAACGAAT 58.959 40.000 26.11 12.65 43.39 3.34
4868 5004 6.198591 CCTACGTTCTTAAGATCCAACGAATC 59.801 42.308 26.11 0.00 43.39 2.52
4869 5005 5.475719 ACGTTCTTAAGATCCAACGAATCA 58.524 37.500 26.11 0.00 43.39 2.57
4870 5006 5.929992 ACGTTCTTAAGATCCAACGAATCAA 59.070 36.000 26.11 0.00 43.39 2.57
4871 5007 6.425721 ACGTTCTTAAGATCCAACGAATCAAA 59.574 34.615 26.11 0.00 43.39 2.69
4872 5008 6.736853 CGTTCTTAAGATCCAACGAATCAAAC 59.263 38.462 18.29 3.52 43.39 2.93
4873 5009 7.570507 CGTTCTTAAGATCCAACGAATCAAACA 60.571 37.037 18.29 0.00 43.39 2.83
4874 5010 7.921786 TCTTAAGATCCAACGAATCAAACAT 57.078 32.000 0.00 0.00 0.00 2.71
4875 5011 7.974675 TCTTAAGATCCAACGAATCAAACATC 58.025 34.615 0.00 0.00 0.00 3.06
4876 5012 5.567138 AAGATCCAACGAATCAAACATCC 57.433 39.130 0.00 0.00 0.00 3.51
4877 5013 4.848357 AGATCCAACGAATCAAACATCCT 58.152 39.130 0.00 0.00 0.00 3.24
4878 5014 4.878397 AGATCCAACGAATCAAACATCCTC 59.122 41.667 0.00 0.00 0.00 3.71
4879 5015 4.286297 TCCAACGAATCAAACATCCTCT 57.714 40.909 0.00 0.00 0.00 3.69
4880 5016 4.651778 TCCAACGAATCAAACATCCTCTT 58.348 39.130 0.00 0.00 0.00 2.85
4881 5017 5.800296 TCCAACGAATCAAACATCCTCTTA 58.200 37.500 0.00 0.00 0.00 2.10
4882 5018 5.874810 TCCAACGAATCAAACATCCTCTTAG 59.125 40.000 0.00 0.00 0.00 2.18
4883 5019 5.643777 CCAACGAATCAAACATCCTCTTAGT 59.356 40.000 0.00 0.00 0.00 2.24
4884 5020 6.183360 CCAACGAATCAAACATCCTCTTAGTC 60.183 42.308 0.00 0.00 0.00 2.59
4885 5021 5.103000 ACGAATCAAACATCCTCTTAGTCG 58.897 41.667 0.00 0.00 0.00 4.18
4886 5022 4.504461 CGAATCAAACATCCTCTTAGTCGG 59.496 45.833 0.00 0.00 0.00 4.79
4887 5023 3.887621 TCAAACATCCTCTTAGTCGGG 57.112 47.619 0.00 0.00 0.00 5.14
4888 5024 3.170717 TCAAACATCCTCTTAGTCGGGT 58.829 45.455 0.00 0.00 0.00 5.28
4889 5025 3.194968 TCAAACATCCTCTTAGTCGGGTC 59.805 47.826 0.00 0.00 0.00 4.46
4890 5026 2.526888 ACATCCTCTTAGTCGGGTCA 57.473 50.000 0.00 0.00 0.00 4.02
4891 5027 3.033659 ACATCCTCTTAGTCGGGTCAT 57.966 47.619 0.00 0.00 0.00 3.06
4892 5028 4.180377 ACATCCTCTTAGTCGGGTCATA 57.820 45.455 0.00 0.00 0.00 2.15
4893 5029 4.742012 ACATCCTCTTAGTCGGGTCATAT 58.258 43.478 0.00 0.00 0.00 1.78
4894 5030 5.888901 ACATCCTCTTAGTCGGGTCATATA 58.111 41.667 0.00 0.00 0.00 0.86
4895 5031 6.312529 ACATCCTCTTAGTCGGGTCATATAA 58.687 40.000 0.00 0.00 0.00 0.98
4896 5032 6.781014 ACATCCTCTTAGTCGGGTCATATAAA 59.219 38.462 0.00 0.00 0.00 1.40
4897 5033 6.645790 TCCTCTTAGTCGGGTCATATAAAC 57.354 41.667 0.00 0.00 0.00 2.01
4898 5034 5.537674 TCCTCTTAGTCGGGTCATATAAACC 59.462 44.000 0.04 0.04 35.97 3.27
4899 5035 5.303589 CCTCTTAGTCGGGTCATATAAACCA 59.696 44.000 9.25 0.00 38.62 3.67
4900 5036 6.152932 TCTTAGTCGGGTCATATAAACCAC 57.847 41.667 9.25 1.60 38.62 4.16
4901 5037 5.657745 TCTTAGTCGGGTCATATAAACCACA 59.342 40.000 9.25 0.00 38.62 4.17
4902 5038 4.402056 AGTCGGGTCATATAAACCACAG 57.598 45.455 9.25 2.06 38.62 3.66
4903 5039 3.773119 AGTCGGGTCATATAAACCACAGT 59.227 43.478 9.25 0.00 38.62 3.55
4904 5040 4.957954 AGTCGGGTCATATAAACCACAGTA 59.042 41.667 9.25 0.00 38.62 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 2.969238 GCCACCATCGCCGATCTG 60.969 66.667 0.00 0.00 0.00 2.90
224 225 2.363147 AGGAGAGGGTGAGGACGC 60.363 66.667 0.00 0.00 35.25 5.19
238 239 0.343372 ACAAGGCTAGGGATGGAGGA 59.657 55.000 0.00 0.00 0.00 3.71
239 240 0.761802 GACAAGGCTAGGGATGGAGG 59.238 60.000 0.00 0.00 0.00 4.30
240 241 0.390860 CGACAAGGCTAGGGATGGAG 59.609 60.000 0.00 0.00 0.00 3.86
241 242 0.325296 ACGACAAGGCTAGGGATGGA 60.325 55.000 0.00 0.00 0.00 3.41
244 245 2.017559 GCGACGACAAGGCTAGGGAT 62.018 60.000 0.00 0.00 0.00 3.85
248 249 1.226717 GGAGCGACGACAAGGCTAG 60.227 63.158 0.00 0.00 37.10 3.42
649 663 2.056223 GTGAGATCCCGAACCCCGA 61.056 63.158 0.00 0.00 41.76 5.14
650 664 2.499685 GTGAGATCCCGAACCCCG 59.500 66.667 0.00 0.00 38.18 5.73
651 665 2.499685 CGTGAGATCCCGAACCCC 59.500 66.667 0.00 0.00 0.00 4.95
652 666 2.202892 GCGTGAGATCCCGAACCC 60.203 66.667 1.65 0.00 0.00 4.11
653 667 2.582498 CGCGTGAGATCCCGAACC 60.582 66.667 0.00 0.00 0.00 3.62
654 668 2.582498 CCGCGTGAGATCCCGAAC 60.582 66.667 4.92 0.00 0.00 3.95
655 669 4.508128 GCCGCGTGAGATCCCGAA 62.508 66.667 4.92 0.00 0.00 4.30
700 714 2.633488 CCTTTCCTCTCCCGAACATTC 58.367 52.381 0.00 0.00 0.00 2.67
702 716 0.912486 CCCTTTCCTCTCCCGAACAT 59.088 55.000 0.00 0.00 0.00 2.71
703 717 0.178915 TCCCTTTCCTCTCCCGAACA 60.179 55.000 0.00 0.00 0.00 3.18
704 718 0.249676 GTCCCTTTCCTCTCCCGAAC 59.750 60.000 0.00 0.00 0.00 3.95
705 719 0.908180 GGTCCCTTTCCTCTCCCGAA 60.908 60.000 0.00 0.00 0.00 4.30
706 720 1.305887 GGTCCCTTTCCTCTCCCGA 60.306 63.158 0.00 0.00 0.00 5.14
707 721 1.612442 TGGTCCCTTTCCTCTCCCG 60.612 63.158 0.00 0.00 0.00 5.14
712 733 3.092301 CCAATTTCTGGTCCCTTTCCTC 58.908 50.000 0.00 0.00 40.78 3.71
721 742 2.024414 CGAATCCCCCAATTTCTGGTC 58.976 52.381 0.00 0.00 44.76 4.02
723 744 1.341976 ACCGAATCCCCCAATTTCTGG 60.342 52.381 0.00 0.00 45.97 3.86
724 745 2.024414 GACCGAATCCCCCAATTTCTG 58.976 52.381 0.00 0.00 0.00 3.02
726 747 1.399714 GGACCGAATCCCCCAATTTC 58.600 55.000 0.00 0.00 42.46 2.17
727 748 0.395173 CGGACCGAATCCCCCAATTT 60.395 55.000 8.64 0.00 46.04 1.82
728 749 1.226262 CGGACCGAATCCCCCAATT 59.774 57.895 8.64 0.00 46.04 2.32
729 750 1.691337 TCGGACCGAATCCCCCAAT 60.691 57.895 15.79 0.00 46.04 3.16
730 751 2.284773 TCGGACCGAATCCCCCAA 60.285 61.111 15.79 0.00 46.04 4.12
806 845 1.775962 GTCTCGCGTCTGACTTTGC 59.224 57.895 5.77 1.26 0.00 3.68
870 909 2.478872 ACTCAATAGGCTGCTCCCTA 57.521 50.000 0.00 5.58 41.48 3.53
883 922 3.951680 CCGGCCCATAGTAAAAACTCAAT 59.048 43.478 0.00 0.00 0.00 2.57
887 926 1.637035 ACCCGGCCCATAGTAAAAACT 59.363 47.619 0.00 0.00 0.00 2.66
895 935 0.178533 TTAACGAACCCGGCCCATAG 59.821 55.000 0.00 0.00 40.78 2.23
922 962 5.125097 ACGTAGTACCCTACAAGAGTGATTG 59.875 44.000 0.00 0.00 43.18 2.67
945 985 6.183360 CCTTCAGTGTCCCAATCTAGTAGTAC 60.183 46.154 0.00 0.00 0.00 2.73
946 986 5.892119 CCTTCAGTGTCCCAATCTAGTAGTA 59.108 44.000 0.00 0.00 0.00 1.82
947 987 4.712337 CCTTCAGTGTCCCAATCTAGTAGT 59.288 45.833 0.00 0.00 0.00 2.73
948 988 4.442192 GCCTTCAGTGTCCCAATCTAGTAG 60.442 50.000 0.00 0.00 0.00 2.57
949 989 3.451178 GCCTTCAGTGTCCCAATCTAGTA 59.549 47.826 0.00 0.00 0.00 1.82
951 991 2.420687 GGCCTTCAGTGTCCCAATCTAG 60.421 54.545 0.00 0.00 0.00 2.43
952 992 1.559682 GGCCTTCAGTGTCCCAATCTA 59.440 52.381 0.00 0.00 0.00 1.98
962 1002 0.607489 CTTCACCTGGGCCTTCAGTG 60.607 60.000 4.53 7.27 33.14 3.66
1378 1429 0.390124 GAGAGGAGCAGAGGCATCAG 59.610 60.000 0.00 0.00 44.61 2.90
1389 1446 1.756538 CAGGAAGGAGAAGAGAGGAGC 59.243 57.143 0.00 0.00 0.00 4.70
1497 1554 6.485313 TGCTACAGTAAGTTGTTAGCACAAAT 59.515 34.615 0.00 0.00 44.72 2.32
1499 1556 5.361427 TGCTACAGTAAGTTGTTAGCACAA 58.639 37.500 0.00 0.00 40.82 3.33
1501 1558 5.917541 TTGCTACAGTAAGTTGTTAGCAC 57.082 39.130 1.17 0.00 37.39 4.40
1510 1567 7.538575 CCATTTTGCTAATTGCTACAGTAAGT 58.461 34.615 0.00 0.00 43.37 2.24
1523 1580 7.066525 CCATTTCATTCAAGCCATTTTGCTAAT 59.933 33.333 0.00 0.00 41.80 1.73
1524 1581 6.372103 CCATTTCATTCAAGCCATTTTGCTAA 59.628 34.615 0.00 0.00 41.80 3.09
1538 1595 4.578516 CCGCTAACCATACCATTTCATTCA 59.421 41.667 0.00 0.00 0.00 2.57
1564 1621 1.366366 CGGAGACCACGGTCAAACT 59.634 57.895 18.21 0.00 46.76 2.66
1573 1630 2.673368 CAGTTAAATCTGCGGAGACCAC 59.327 50.000 9.49 3.65 0.00 4.16
1577 1634 2.093658 GGACCAGTTAAATCTGCGGAGA 60.094 50.000 9.76 9.76 34.47 3.71
1580 1637 1.006832 CGGACCAGTTAAATCTGCGG 58.993 55.000 0.00 0.00 34.47 5.69
1598 1655 4.682787 TCACATAATTCACTACTGCTCCG 58.317 43.478 0.00 0.00 0.00 4.63
1606 1663 9.817809 GTCACTAAATCCTCACATAATTCACTA 57.182 33.333 0.00 0.00 0.00 2.74
1681 1742 7.704578 ATTCAGTCGTGGCACTATATAGTAT 57.295 36.000 15.03 0.00 34.13 2.12
1696 1757 7.648142 TGAGAATTTAAAAGCAATTCAGTCGT 58.352 30.769 8.61 0.00 41.35 4.34
1737 1799 5.409520 GTCATTTAGAACTGCTGATGACACA 59.590 40.000 12.83 0.00 43.54 3.72
1745 1807 5.220548 CCATTCTCGTCATTTAGAACTGCTG 60.221 44.000 0.00 0.00 34.70 4.41
1761 1823 0.953471 TGGACAAACGGCCATTCTCG 60.953 55.000 2.24 0.00 0.00 4.04
1770 1832 5.080969 TCCTTCTACTTATGGACAAACGG 57.919 43.478 0.00 0.00 0.00 4.44
1871 1933 4.623932 AAGTGCTGTATTCTCCACAGAA 57.376 40.909 6.67 0.00 45.10 3.02
1885 1947 5.042593 TGCAAATTCAACTGTAAAGTGCTG 58.957 37.500 0.00 0.00 0.00 4.41
1912 1974 4.802307 TCTGTTGCCTCTCTAGAGATCAT 58.198 43.478 22.59 0.00 44.74 2.45
1957 2019 5.615544 CGATTTCATCCGCCATATTGAGTTC 60.616 44.000 0.00 0.00 0.00 3.01
2106 2168 8.605325 ATTAACCTACACCAACAGACTATACT 57.395 34.615 0.00 0.00 0.00 2.12
2205 2267 2.676163 AAAAGGTCCGTCGCTGGCTT 62.676 55.000 0.00 0.00 0.00 4.35
2429 2546 7.246674 AGTGAATACCAACTTATATTGTGCG 57.753 36.000 0.00 0.00 0.00 5.34
2801 2919 6.541934 AACTATCAAACCACTAGTACTCCC 57.458 41.667 0.00 0.00 0.00 4.30
3020 3139 9.457436 ACAAACTAGGGAATTAAATACACGATT 57.543 29.630 0.00 0.00 0.00 3.34
3021 3140 8.889717 CACAAACTAGGGAATTAAATACACGAT 58.110 33.333 0.00 0.00 0.00 3.73
3045 3164 2.143876 ACCAGTGCCCATTTATCCAC 57.856 50.000 0.00 0.00 0.00 4.02
3124 3243 2.227149 TGCAGTACAAGCAAGCTTCATG 59.773 45.455 10.16 0.00 39.39 3.07
3401 3520 4.420168 TGCACACAAAAGTAAGAAAGCAC 58.580 39.130 0.00 0.00 0.00 4.40
3464 3583 2.930950 TGAACCCAAACTCAGTCTTGG 58.069 47.619 10.31 10.31 41.58 3.61
3468 3587 1.609072 GGCTTGAACCCAAACTCAGTC 59.391 52.381 0.00 0.00 0.00 3.51
3561 3680 4.619863 GCCAACTCACAATCATTTGCATCT 60.620 41.667 0.00 0.00 36.22 2.90
3580 3699 3.402110 CCATAGCATCAATAGACGCCAA 58.598 45.455 0.00 0.00 32.29 4.52
3585 3704 1.734465 GCGGCCATAGCATCAATAGAC 59.266 52.381 2.24 0.00 42.56 2.59
3633 3752 5.044476 TCCCAACCTTCCTCTAAATATTGCA 60.044 40.000 0.00 0.00 0.00 4.08
3773 3896 7.475299 ACCTGGGTTTATGGAAGAATAAAGAA 58.525 34.615 0.00 0.00 33.71 2.52
3791 3914 2.134287 CCCATCGATCGACCTGGGT 61.134 63.158 34.33 13.57 38.81 4.51
3826 3949 3.814842 GGTCCGCAATATCAACATCATGA 59.185 43.478 0.00 0.00 0.00 3.07
3912 4035 8.015087 CAGAAAACAATTACGCAGATTACTGAA 58.985 33.333 0.00 0.00 46.03 3.02
3915 4038 6.149474 AGCAGAAAACAATTACGCAGATTACT 59.851 34.615 0.00 0.00 0.00 2.24
3916 4039 6.314784 AGCAGAAAACAATTACGCAGATTAC 58.685 36.000 0.00 0.00 0.00 1.89
4013 4149 0.676782 AGCACCTGTTGAATACCGGC 60.677 55.000 0.00 0.00 34.69 6.13
4048 4184 6.202954 ACATAACACACTGAGCTCTGTTTAAC 59.797 38.462 22.24 0.00 0.00 2.01
4107 4243 1.279496 CAGAGACCACTGGGATCCAA 58.721 55.000 15.23 0.00 38.05 3.53
4167 4303 3.005554 CTGCAGTCCTCATAACACCAAG 58.994 50.000 5.25 0.00 0.00 3.61
4175 4311 2.289840 TGCTGCTGCAGTCCTCATA 58.710 52.632 28.50 6.30 45.31 2.15
4198 4334 0.249615 GAGGATGCAGCGCTGACATA 60.250 55.000 40.21 22.07 31.15 2.29
4202 4338 4.519437 CCGAGGATGCAGCGCTGA 62.519 66.667 40.21 24.64 0.00 4.26
4267 4403 5.809562 TGGAAAATTGTGCTACAGTGTTTTG 59.190 36.000 0.00 0.00 0.00 2.44
4277 4413 9.679661 TCTCATATAAACTGGAAAATTGTGCTA 57.320 29.630 0.00 0.00 0.00 3.49
4331 4467 3.621715 ACTTCACACTCGTTTCAGTTTCC 59.378 43.478 0.00 0.00 0.00 3.13
4332 4468 4.859629 ACTTCACACTCGTTTCAGTTTC 57.140 40.909 0.00 0.00 0.00 2.78
4384 4520 6.959639 ACACACAGATAACTTGAAAACCAT 57.040 33.333 0.00 0.00 0.00 3.55
4393 4529 5.709164 AGTAGGTCGTACACACAGATAACTT 59.291 40.000 5.55 0.00 33.55 2.66
4395 4531 5.557891 AGTAGGTCGTACACACAGATAAC 57.442 43.478 5.55 0.00 33.55 1.89
4396 4532 5.474532 ACAAGTAGGTCGTACACACAGATAA 59.525 40.000 5.55 0.00 33.55 1.75
4399 4535 3.216800 ACAAGTAGGTCGTACACACAGA 58.783 45.455 5.55 0.00 33.55 3.41
4400 4536 3.637998 ACAAGTAGGTCGTACACACAG 57.362 47.619 5.55 0.00 33.55 3.66
4401 4537 4.114073 CAAACAAGTAGGTCGTACACACA 58.886 43.478 5.55 0.00 33.55 3.72
4411 4547 6.767524 TTGTTTCACATCAAACAAGTAGGT 57.232 33.333 7.28 0.00 46.51 3.08
4419 4555 4.851558 GCTCGGTATTGTTTCACATCAAAC 59.148 41.667 0.00 0.00 36.87 2.93
4420 4556 4.377943 CGCTCGGTATTGTTTCACATCAAA 60.378 41.667 0.00 0.00 0.00 2.69
4432 4568 0.039074 CTAGGAGGCGCTCGGTATTG 60.039 60.000 7.64 0.00 0.00 1.90
4439 4575 0.179097 CCTTGAACTAGGAGGCGCTC 60.179 60.000 7.64 2.45 37.50 5.03
4442 4578 0.902531 TTCCCTTGAACTAGGAGGCG 59.097 55.000 4.05 0.00 37.50 5.52
4455 4591 6.560003 ACATTTTTCTTCCACTTTTCCCTT 57.440 33.333 0.00 0.00 0.00 3.95
4513 4649 8.700973 GCCCCTTTCCTTTGAATAAACATATAA 58.299 33.333 0.00 0.00 0.00 0.98
4518 4654 4.227197 TGCCCCTTTCCTTTGAATAAACA 58.773 39.130 0.00 0.00 0.00 2.83
4535 4671 3.004752 TCTCTATGCTTTCTTTGCCCC 57.995 47.619 0.00 0.00 0.00 5.80
4581 4717 7.504238 TGTTAGATTTCCTGTGCTTTTCCTTTA 59.496 33.333 0.00 0.00 0.00 1.85
4591 4727 4.184629 AGTCGATGTTAGATTTCCTGTGC 58.815 43.478 0.00 0.00 0.00 4.57
4595 4731 6.608002 AGTTCCTAGTCGATGTTAGATTTCCT 59.392 38.462 0.00 0.00 0.00 3.36
4618 4754 7.651304 TCGTGCACATGAAAATTCAAAAATAGT 59.349 29.630 18.64 0.00 41.13 2.12
4633 4769 0.948623 CCCGTTCTTCGTGCACATGA 60.949 55.000 18.64 8.45 37.94 3.07
4635 4771 0.949105 GTCCCGTTCTTCGTGCACAT 60.949 55.000 18.64 0.00 37.94 3.21
4650 4786 3.451402 ACCACCAAGGATTTTAGTCCC 57.549 47.619 0.00 0.00 41.22 4.46
4657 4793 4.735369 TGTTGTCATACCACCAAGGATTT 58.265 39.130 0.00 0.00 41.22 2.17
4658 4794 4.380843 TGTTGTCATACCACCAAGGATT 57.619 40.909 0.00 0.00 41.22 3.01
4659 4795 4.591321 ATGTTGTCATACCACCAAGGAT 57.409 40.909 0.00 0.00 42.07 3.24
4660 4796 4.380843 AATGTTGTCATACCACCAAGGA 57.619 40.909 0.00 0.00 35.37 3.36
4661 4797 5.467035 AAAATGTTGTCATACCACCAAGG 57.533 39.130 0.00 0.00 36.99 3.61
4663 4799 9.915629 GTAATTAAAATGTTGTCATACCACCAA 57.084 29.630 0.00 0.00 33.49 3.67
4664 4800 9.078990 TGTAATTAAAATGTTGTCATACCACCA 57.921 29.630 0.00 0.00 33.49 4.17
4665 4801 9.349145 GTGTAATTAAAATGTTGTCATACCACC 57.651 33.333 0.00 0.00 33.49 4.61
4666 4802 9.900710 TGTGTAATTAAAATGTTGTCATACCAC 57.099 29.630 0.00 0.00 33.49 4.16
4684 4820 9.719279 CAAATCAAAGCACAAAAATGTGTAATT 57.281 25.926 10.33 1.76 41.53 1.40
4685 4821 9.107177 TCAAATCAAAGCACAAAAATGTGTAAT 57.893 25.926 10.33 0.00 41.53 1.89
4686 4822 8.386606 GTCAAATCAAAGCACAAAAATGTGTAA 58.613 29.630 10.33 0.00 41.53 2.41
4687 4823 7.010923 GGTCAAATCAAAGCACAAAAATGTGTA 59.989 33.333 10.33 0.00 41.53 2.90
4688 4824 6.183360 GGTCAAATCAAAGCACAAAAATGTGT 60.183 34.615 10.33 0.00 41.53 3.72
4689 4825 6.183360 TGGTCAAATCAAAGCACAAAAATGTG 60.183 34.615 4.64 4.64 42.32 3.21
4690 4826 5.879223 TGGTCAAATCAAAGCACAAAAATGT 59.121 32.000 0.00 0.00 0.00 2.71
4691 4827 6.360844 TGGTCAAATCAAAGCACAAAAATG 57.639 33.333 0.00 0.00 0.00 2.32
4692 4828 6.543100 ACATGGTCAAATCAAAGCACAAAAAT 59.457 30.769 0.00 0.00 0.00 1.82
4693 4829 5.879223 ACATGGTCAAATCAAAGCACAAAAA 59.121 32.000 0.00 0.00 0.00 1.94
4694 4830 5.426504 ACATGGTCAAATCAAAGCACAAAA 58.573 33.333 0.00 0.00 0.00 2.44
4695 4831 5.021033 ACATGGTCAAATCAAAGCACAAA 57.979 34.783 0.00 0.00 0.00 2.83
4696 4832 4.669206 ACATGGTCAAATCAAAGCACAA 57.331 36.364 0.00 0.00 0.00 3.33
4697 4833 4.669206 AACATGGTCAAATCAAAGCACA 57.331 36.364 0.00 0.00 0.00 4.57
4698 4834 7.656707 AATAAACATGGTCAAATCAAAGCAC 57.343 32.000 0.00 0.00 0.00 4.40
4699 4835 8.034215 CCTAATAAACATGGTCAAATCAAAGCA 58.966 33.333 0.00 0.00 0.00 3.91
4700 4836 8.250332 TCCTAATAAACATGGTCAAATCAAAGC 58.750 33.333 0.00 0.00 0.00 3.51
4707 4843 9.308000 ACAGAAATCCTAATAAACATGGTCAAA 57.692 29.630 0.00 0.00 0.00 2.69
4708 4844 8.739039 CACAGAAATCCTAATAAACATGGTCAA 58.261 33.333 0.00 0.00 0.00 3.18
4709 4845 7.888021 ACACAGAAATCCTAATAAACATGGTCA 59.112 33.333 0.00 0.00 0.00 4.02
4710 4846 8.281212 ACACAGAAATCCTAATAAACATGGTC 57.719 34.615 0.00 0.00 0.00 4.02
4711 4847 8.650143 AACACAGAAATCCTAATAAACATGGT 57.350 30.769 0.00 0.00 0.00 3.55
4712 4848 8.960591 AGAACACAGAAATCCTAATAAACATGG 58.039 33.333 0.00 0.00 0.00 3.66
4715 4851 9.010029 GGAAGAACACAGAAATCCTAATAAACA 57.990 33.333 0.00 0.00 0.00 2.83
4716 4852 8.175716 CGGAAGAACACAGAAATCCTAATAAAC 58.824 37.037 0.00 0.00 0.00 2.01
4717 4853 7.335924 CCGGAAGAACACAGAAATCCTAATAAA 59.664 37.037 0.00 0.00 0.00 1.40
4718 4854 6.821665 CCGGAAGAACACAGAAATCCTAATAA 59.178 38.462 0.00 0.00 0.00 1.40
4719 4855 6.070424 ACCGGAAGAACACAGAAATCCTAATA 60.070 38.462 9.46 0.00 0.00 0.98
4720 4856 5.186198 CCGGAAGAACACAGAAATCCTAAT 58.814 41.667 0.00 0.00 0.00 1.73
4721 4857 4.041198 ACCGGAAGAACACAGAAATCCTAA 59.959 41.667 9.46 0.00 0.00 2.69
4722 4858 3.581332 ACCGGAAGAACACAGAAATCCTA 59.419 43.478 9.46 0.00 0.00 2.94
4723 4859 2.372172 ACCGGAAGAACACAGAAATCCT 59.628 45.455 9.46 0.00 0.00 3.24
4724 4860 2.779506 ACCGGAAGAACACAGAAATCC 58.220 47.619 9.46 0.00 0.00 3.01
4725 4861 3.188667 GGAACCGGAAGAACACAGAAATC 59.811 47.826 9.46 0.00 0.00 2.17
4726 4862 3.146847 GGAACCGGAAGAACACAGAAAT 58.853 45.455 9.46 0.00 0.00 2.17
4727 4863 2.171870 AGGAACCGGAAGAACACAGAAA 59.828 45.455 9.46 0.00 0.00 2.52
4728 4864 1.766496 AGGAACCGGAAGAACACAGAA 59.234 47.619 9.46 0.00 0.00 3.02
4729 4865 1.420430 AGGAACCGGAAGAACACAGA 58.580 50.000 9.46 0.00 0.00 3.41
4730 4866 3.611766 ATAGGAACCGGAAGAACACAG 57.388 47.619 9.46 0.00 0.00 3.66
4731 4867 5.012354 AGTTTATAGGAACCGGAAGAACACA 59.988 40.000 9.46 0.00 0.00 3.72
4732 4868 5.485620 AGTTTATAGGAACCGGAAGAACAC 58.514 41.667 9.46 0.00 0.00 3.32
4733 4869 5.750352 AGTTTATAGGAACCGGAAGAACA 57.250 39.130 9.46 0.00 0.00 3.18
4734 4870 6.977502 GTCTAGTTTATAGGAACCGGAAGAAC 59.022 42.308 9.46 1.40 0.00 3.01
4735 4871 6.664816 TGTCTAGTTTATAGGAACCGGAAGAA 59.335 38.462 9.46 0.00 0.00 2.52
4736 4872 6.189859 TGTCTAGTTTATAGGAACCGGAAGA 58.810 40.000 9.46 0.00 0.00 2.87
4737 4873 6.461110 TGTCTAGTTTATAGGAACCGGAAG 57.539 41.667 9.46 0.00 0.00 3.46
4738 4874 6.684613 GCATGTCTAGTTTATAGGAACCGGAA 60.685 42.308 9.46 0.00 0.00 4.30
4739 4875 5.221382 GCATGTCTAGTTTATAGGAACCGGA 60.221 44.000 9.46 0.00 0.00 5.14
4740 4876 4.989168 GCATGTCTAGTTTATAGGAACCGG 59.011 45.833 0.00 0.00 0.00 5.28
4741 4877 5.597806 TGCATGTCTAGTTTATAGGAACCG 58.402 41.667 0.00 0.00 0.00 4.44
4742 4878 6.017852 GCTTGCATGTCTAGTTTATAGGAACC 60.018 42.308 1.14 0.00 0.00 3.62
4743 4879 6.763610 AGCTTGCATGTCTAGTTTATAGGAAC 59.236 38.462 1.14 0.00 0.00 3.62
4744 4880 6.763135 CAGCTTGCATGTCTAGTTTATAGGAA 59.237 38.462 1.14 0.00 0.00 3.36
4745 4881 6.098266 TCAGCTTGCATGTCTAGTTTATAGGA 59.902 38.462 1.14 0.00 0.00 2.94
4746 4882 6.201806 GTCAGCTTGCATGTCTAGTTTATAGG 59.798 42.308 1.14 0.00 0.00 2.57
4747 4883 6.758416 TGTCAGCTTGCATGTCTAGTTTATAG 59.242 38.462 1.14 0.00 0.00 1.31
4748 4884 6.639563 TGTCAGCTTGCATGTCTAGTTTATA 58.360 36.000 1.14 0.00 0.00 0.98
4749 4885 5.491070 TGTCAGCTTGCATGTCTAGTTTAT 58.509 37.500 1.14 0.00 0.00 1.40
4750 4886 4.893608 TGTCAGCTTGCATGTCTAGTTTA 58.106 39.130 1.14 0.00 0.00 2.01
4751 4887 3.743521 TGTCAGCTTGCATGTCTAGTTT 58.256 40.909 1.14 0.00 0.00 2.66
4752 4888 3.407424 TGTCAGCTTGCATGTCTAGTT 57.593 42.857 1.14 0.00 0.00 2.24
4753 4889 3.407424 TTGTCAGCTTGCATGTCTAGT 57.593 42.857 1.14 0.00 0.00 2.57
4754 4890 4.214971 ACTTTTGTCAGCTTGCATGTCTAG 59.785 41.667 1.14 0.00 0.00 2.43
4755 4891 4.136796 ACTTTTGTCAGCTTGCATGTCTA 58.863 39.130 1.14 0.00 0.00 2.59
4756 4892 2.954318 ACTTTTGTCAGCTTGCATGTCT 59.046 40.909 1.14 0.00 0.00 3.41
4757 4893 3.360249 ACTTTTGTCAGCTTGCATGTC 57.640 42.857 1.14 0.00 0.00 3.06
4758 4894 3.806625 AACTTTTGTCAGCTTGCATGT 57.193 38.095 1.14 0.00 0.00 3.21
4759 4895 4.365723 AGAAACTTTTGTCAGCTTGCATG 58.634 39.130 0.00 0.00 0.00 4.06
4760 4896 4.660789 AGAAACTTTTGTCAGCTTGCAT 57.339 36.364 0.00 0.00 0.00 3.96
4761 4897 4.454728 AAGAAACTTTTGTCAGCTTGCA 57.545 36.364 0.00 0.00 0.00 4.08
4762 4898 4.627035 ACAAAGAAACTTTTGTCAGCTTGC 59.373 37.500 0.00 0.00 45.49 4.01
4774 4910 9.271828 ACAAATGACTGAAAAACAAAGAAACTT 57.728 25.926 0.00 0.00 0.00 2.66
4775 4911 8.831715 ACAAATGACTGAAAAACAAAGAAACT 57.168 26.923 0.00 0.00 0.00 2.66
4776 4912 9.877137 AAACAAATGACTGAAAAACAAAGAAAC 57.123 25.926 0.00 0.00 0.00 2.78
4779 4915 9.875675 CAAAAACAAATGACTGAAAAACAAAGA 57.124 25.926 0.00 0.00 0.00 2.52
4780 4916 8.629132 GCAAAAACAAATGACTGAAAAACAAAG 58.371 29.630 0.00 0.00 0.00 2.77
4781 4917 7.322222 CGCAAAAACAAATGACTGAAAAACAAA 59.678 29.630 0.00 0.00 0.00 2.83
4782 4918 6.794158 CGCAAAAACAAATGACTGAAAAACAA 59.206 30.769 0.00 0.00 0.00 2.83
4783 4919 6.302615 CGCAAAAACAAATGACTGAAAAACA 58.697 32.000 0.00 0.00 0.00 2.83
4784 4920 5.224925 GCGCAAAAACAAATGACTGAAAAAC 59.775 36.000 0.30 0.00 0.00 2.43
4785 4921 5.106948 TGCGCAAAAACAAATGACTGAAAAA 60.107 32.000 8.16 0.00 0.00 1.94
4786 4922 4.389992 TGCGCAAAAACAAATGACTGAAAA 59.610 33.333 8.16 0.00 0.00 2.29
4787 4923 3.928992 TGCGCAAAAACAAATGACTGAAA 59.071 34.783 8.16 0.00 0.00 2.69
4788 4924 3.515630 TGCGCAAAAACAAATGACTGAA 58.484 36.364 8.16 0.00 0.00 3.02
4789 4925 3.156511 TGCGCAAAAACAAATGACTGA 57.843 38.095 8.16 0.00 0.00 3.41
4790 4926 3.790058 CATGCGCAAAAACAAATGACTG 58.210 40.909 17.11 0.00 0.00 3.51
4791 4927 2.221517 GCATGCGCAAAAACAAATGACT 59.778 40.909 17.11 0.00 38.36 3.41
4792 4928 2.562948 GCATGCGCAAAAACAAATGAC 58.437 42.857 17.11 0.00 38.36 3.06
4793 4929 2.945798 GCATGCGCAAAAACAAATGA 57.054 40.000 17.11 0.00 38.36 2.57
4805 4941 4.023707 AGGAATAAGAAGTAATGCATGCGC 60.024 41.667 14.09 0.00 39.24 6.09
4806 4942 5.008019 ACAGGAATAAGAAGTAATGCATGCG 59.992 40.000 14.09 0.00 0.00 4.73
4807 4943 6.183360 ACACAGGAATAAGAAGTAATGCATGC 60.183 38.462 11.82 11.82 0.00 4.06
4808 4944 7.325660 ACACAGGAATAAGAAGTAATGCATG 57.674 36.000 0.00 0.00 0.00 4.06
4809 4945 7.944729 AACACAGGAATAAGAAGTAATGCAT 57.055 32.000 0.00 0.00 0.00 3.96
4810 4946 7.759489 AAACACAGGAATAAGAAGTAATGCA 57.241 32.000 0.00 0.00 0.00 3.96
4834 4970 9.813446 GGATCTTAAGAACGTAGGAATAGAAAA 57.187 33.333 9.71 0.00 0.00 2.29
4835 4971 8.974238 TGGATCTTAAGAACGTAGGAATAGAAA 58.026 33.333 9.71 0.00 0.00 2.52
4836 4972 8.529424 TGGATCTTAAGAACGTAGGAATAGAA 57.471 34.615 9.71 0.00 0.00 2.10
4837 4973 8.411683 GTTGGATCTTAAGAACGTAGGAATAGA 58.588 37.037 9.71 0.00 0.00 1.98
4838 4974 7.378995 CGTTGGATCTTAAGAACGTAGGAATAG 59.621 40.741 9.71 0.00 37.11 1.73
4839 4975 7.067372 TCGTTGGATCTTAAGAACGTAGGAATA 59.933 37.037 20.87 3.91 41.44 1.75
4840 4976 6.040878 CGTTGGATCTTAAGAACGTAGGAAT 58.959 40.000 9.71 0.00 37.11 3.01
4841 4977 5.183713 TCGTTGGATCTTAAGAACGTAGGAA 59.816 40.000 20.87 5.03 41.44 3.36
4842 4978 4.701651 TCGTTGGATCTTAAGAACGTAGGA 59.298 41.667 20.87 12.69 41.44 2.94
4843 4979 4.990257 TCGTTGGATCTTAAGAACGTAGG 58.010 43.478 20.87 11.10 41.44 3.18
4844 4980 6.750501 TGATTCGTTGGATCTTAAGAACGTAG 59.249 38.462 20.87 8.43 41.44 3.51
4845 4981 6.623486 TGATTCGTTGGATCTTAAGAACGTA 58.377 36.000 20.87 14.94 41.44 3.57
4846 4982 5.475719 TGATTCGTTGGATCTTAAGAACGT 58.524 37.500 20.87 8.23 41.44 3.99
4847 4983 6.403333 TTGATTCGTTGGATCTTAAGAACG 57.597 37.500 17.40 17.40 41.93 3.95
4848 4984 7.581476 TGTTTGATTCGTTGGATCTTAAGAAC 58.419 34.615 9.71 6.74 0.00 3.01
4849 4985 7.737972 TGTTTGATTCGTTGGATCTTAAGAA 57.262 32.000 9.71 0.00 0.00 2.52
4850 4986 7.065803 GGATGTTTGATTCGTTGGATCTTAAGA 59.934 37.037 7.82 7.82 0.00 2.10
4851 4987 7.066284 AGGATGTTTGATTCGTTGGATCTTAAG 59.934 37.037 0.00 0.00 0.00 1.85
4852 4988 6.884295 AGGATGTTTGATTCGTTGGATCTTAA 59.116 34.615 0.00 0.00 0.00 1.85
4853 4989 6.414732 AGGATGTTTGATTCGTTGGATCTTA 58.585 36.000 0.00 0.00 0.00 2.10
4854 4990 5.256474 AGGATGTTTGATTCGTTGGATCTT 58.744 37.500 0.00 0.00 0.00 2.40
4855 4991 4.848357 AGGATGTTTGATTCGTTGGATCT 58.152 39.130 0.00 0.00 0.00 2.75
4856 4992 4.878397 AGAGGATGTTTGATTCGTTGGATC 59.122 41.667 0.00 0.00 0.00 3.36
4857 4993 4.848357 AGAGGATGTTTGATTCGTTGGAT 58.152 39.130 0.00 0.00 0.00 3.41
4858 4994 4.286297 AGAGGATGTTTGATTCGTTGGA 57.714 40.909 0.00 0.00 0.00 3.53
4859 4995 5.643777 ACTAAGAGGATGTTTGATTCGTTGG 59.356 40.000 0.00 0.00 0.00 3.77
4860 4996 6.454318 CGACTAAGAGGATGTTTGATTCGTTG 60.454 42.308 0.00 0.00 0.00 4.10
4861 4997 5.577164 CGACTAAGAGGATGTTTGATTCGTT 59.423 40.000 0.00 0.00 0.00 3.85
4862 4998 5.103000 CGACTAAGAGGATGTTTGATTCGT 58.897 41.667 0.00 0.00 0.00 3.85
4863 4999 4.504461 CCGACTAAGAGGATGTTTGATTCG 59.496 45.833 0.00 0.00 0.00 3.34
4864 5000 4.811557 CCCGACTAAGAGGATGTTTGATTC 59.188 45.833 0.00 0.00 0.00 2.52
4865 5001 4.225267 ACCCGACTAAGAGGATGTTTGATT 59.775 41.667 0.00 0.00 0.00 2.57
4866 5002 3.775316 ACCCGACTAAGAGGATGTTTGAT 59.225 43.478 0.00 0.00 0.00 2.57
4867 5003 3.170717 ACCCGACTAAGAGGATGTTTGA 58.829 45.455 0.00 0.00 0.00 2.69
4868 5004 3.056107 TGACCCGACTAAGAGGATGTTTG 60.056 47.826 0.00 0.00 0.00 2.93
4869 5005 3.170717 TGACCCGACTAAGAGGATGTTT 58.829 45.455 0.00 0.00 0.00 2.83
4870 5006 2.816411 TGACCCGACTAAGAGGATGTT 58.184 47.619 0.00 0.00 0.00 2.71
4871 5007 2.526888 TGACCCGACTAAGAGGATGT 57.473 50.000 0.00 0.00 0.00 3.06
4872 5008 6.835819 TTATATGACCCGACTAAGAGGATG 57.164 41.667 0.00 0.00 0.00 3.51
4873 5009 6.210984 GGTTTATATGACCCGACTAAGAGGAT 59.789 42.308 0.00 0.00 0.00 3.24
4874 5010 5.537674 GGTTTATATGACCCGACTAAGAGGA 59.462 44.000 0.00 0.00 0.00 3.71
4875 5011 5.303589 TGGTTTATATGACCCGACTAAGAGG 59.696 44.000 7.42 0.00 36.30 3.69
4876 5012 6.183360 TGTGGTTTATATGACCCGACTAAGAG 60.183 42.308 7.42 0.00 36.30 2.85
4877 5013 5.657745 TGTGGTTTATATGACCCGACTAAGA 59.342 40.000 7.42 0.00 36.30 2.10
4878 5014 5.909477 TGTGGTTTATATGACCCGACTAAG 58.091 41.667 7.42 0.00 36.30 2.18
4879 5015 5.422970 ACTGTGGTTTATATGACCCGACTAA 59.577 40.000 7.42 0.00 36.30 2.24
4880 5016 4.957954 ACTGTGGTTTATATGACCCGACTA 59.042 41.667 7.42 0.00 36.30 2.59
4881 5017 3.773119 ACTGTGGTTTATATGACCCGACT 59.227 43.478 7.42 0.00 36.30 4.18
4882 5018 4.133013 ACTGTGGTTTATATGACCCGAC 57.867 45.455 7.42 2.18 36.30 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.