Multiple sequence alignment - TraesCS2D01G146000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G146000 chr2D 100.000 2220 0 0 1 2220 87749390 87747171 0.000000e+00 4100.0
1 TraesCS2D01G146000 chr2D 100.000 1071 0 0 2702 3772 87746689 87745619 0.000000e+00 1978.0
2 TraesCS2D01G146000 chr2D 100.000 29 0 0 956 984 644995303 644995331 2.000000e-03 54.7
3 TraesCS2D01G146000 chr2B 91.580 1247 80 16 984 2220 140787722 140786491 0.000000e+00 1698.0
4 TraesCS2D01G146000 chr2B 90.205 929 51 18 38 961 140788601 140787708 0.000000e+00 1175.0
5 TraesCS2D01G146000 chr2B 92.767 553 22 12 2705 3254 140786406 140785869 0.000000e+00 784.0
6 TraesCS2D01G146000 chr2B 90.823 316 23 6 3236 3551 140785932 140785623 5.830000e-113 418.0
7 TraesCS2D01G146000 chr2B 86.364 242 12 11 3536 3757 140785436 140785196 1.050000e-60 244.0
8 TraesCS2D01G146000 chr2B 93.023 43 3 0 3263 3305 50286152 50286194 3.150000e-06 63.9
9 TraesCS2D01G146000 chr2A 90.815 1252 90 18 984 2220 87892463 87891222 0.000000e+00 1652.0
10 TraesCS2D01G146000 chr2A 88.712 629 50 15 342 961 87893065 87892449 0.000000e+00 749.0
11 TraesCS2D01G146000 chr2A 89.885 524 21 11 2702 3207 87891154 87890645 0.000000e+00 645.0
12 TraesCS2D01G146000 chr2A 94.500 200 6 3 25 220 87893534 87893336 1.700000e-78 303.0
13 TraesCS2D01G146000 chr2A 97.297 37 1 0 3270 3306 757639532 757639568 3.150000e-06 63.9
14 TraesCS2D01G146000 chr7D 100.000 36 0 0 3268 3303 148147620 148147655 2.430000e-07 67.6
15 TraesCS2D01G146000 chr3B 97.436 39 1 0 3269 3307 814550203 814550241 2.430000e-07 67.6
16 TraesCS2D01G146000 chr1D 97.436 39 1 0 3271 3309 486746278 486746316 2.430000e-07 67.6
17 TraesCS2D01G146000 chr3A 95.000 40 2 0 3270 3309 514095776 514095815 3.150000e-06 63.9
18 TraesCS2D01G146000 chr5B 97.222 36 1 0 3272 3307 114907077 114907042 1.130000e-05 62.1
19 TraesCS2D01G146000 chr7A 89.130 46 5 0 3264 3309 655373763 655373808 1.460000e-04 58.4
20 TraesCS2D01G146000 chr5A 100.000 28 0 0 46 73 37933725 37933698 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G146000 chr2D 87745619 87749390 3771 True 3039.00 4100 100.0000 1 3772 2 chr2D.!!$R1 3771
1 TraesCS2D01G146000 chr2B 140785196 140788601 3405 True 863.80 1698 90.3478 38 3757 5 chr2B.!!$R1 3719
2 TraesCS2D01G146000 chr2A 87890645 87893534 2889 True 837.25 1652 90.9780 25 3207 4 chr2A.!!$R1 3182


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.527817 CTGTCTAGCCCCGTTTAGCG 60.528 60.000 0.00 0.0 40.95 4.26 F
964 1145 1.002033 ACAACGCGTCGAGTAGTTTCT 60.002 47.619 14.44 0.0 0.00 2.52 F
965 1146 2.049228 CAACGCGTCGAGTAGTTTCTT 58.951 47.619 14.44 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1058 1241 1.481363 CAAGCCTGCATCAGAGAGAGA 59.519 52.381 0.00 0.0 32.44 3.10 R
2704 2902 0.320683 TAGAGCGAGCAAGCAAGCAA 60.321 50.000 12.73 0.0 40.15 3.91 R
2857 3071 0.546267 AGGTCAGAGCACCAGGACAT 60.546 55.000 1.66 0.0 39.16 3.06 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.840005 CTCGCGAGGCTTTCCCCC 62.840 72.222 28.40 0.00 0.00 5.40
20 21 4.035102 GCGAGGCTTTCCCCCTGT 62.035 66.667 0.00 0.00 31.41 4.00
21 22 2.269241 CGAGGCTTTCCCCCTGTC 59.731 66.667 0.00 0.00 31.41 3.51
22 23 2.294078 CGAGGCTTTCCCCCTGTCT 61.294 63.158 0.00 0.00 31.41 3.41
23 24 0.976073 CGAGGCTTTCCCCCTGTCTA 60.976 60.000 0.00 0.00 31.41 2.59
28 29 1.618447 TTTCCCCCTGTCTAGCCCC 60.618 63.158 0.00 0.00 0.00 5.80
36 37 0.527817 CTGTCTAGCCCCGTTTAGCG 60.528 60.000 0.00 0.00 40.95 4.26
131 132 4.813526 CAGCGACGACCGTCCTCG 62.814 72.222 15.74 13.59 41.76 4.63
194 200 3.799755 GCCACGCAACGATCCACC 61.800 66.667 0.00 0.00 0.00 4.61
195 201 3.487202 CCACGCAACGATCCACCG 61.487 66.667 0.00 0.00 0.00 4.94
392 551 4.279326 GGGGACGAGGCATCTAGT 57.721 61.111 0.00 0.00 0.00 2.57
402 561 2.744202 GAGGCATCTAGTGTGTTTGTGG 59.256 50.000 0.00 0.00 0.00 4.17
404 563 3.326588 AGGCATCTAGTGTGTTTGTGGTA 59.673 43.478 0.00 0.00 0.00 3.25
545 706 1.679032 GGGAATCAGTCCTTTCCACCG 60.679 57.143 0.00 0.00 46.92 4.94
563 724 3.692101 CACCGCCACCAACTGAAATTATA 59.308 43.478 0.00 0.00 0.00 0.98
569 730 5.591099 CCACCAACTGAAATTATACCATGC 58.409 41.667 0.00 0.00 0.00 4.06
607 771 1.212935 AGGTGTTCATCCTGGCATACC 59.787 52.381 0.00 0.00 33.62 2.73
608 772 1.212935 GGTGTTCATCCTGGCATACCT 59.787 52.381 0.00 0.00 36.63 3.08
609 773 2.357154 GGTGTTCATCCTGGCATACCTT 60.357 50.000 0.00 0.00 36.63 3.50
610 774 3.356290 GTGTTCATCCTGGCATACCTTT 58.644 45.455 0.00 0.00 36.63 3.11
611 775 3.129287 GTGTTCATCCTGGCATACCTTTG 59.871 47.826 0.00 0.00 36.63 2.77
612 776 3.245229 TGTTCATCCTGGCATACCTTTGT 60.245 43.478 0.00 0.00 36.63 2.83
613 777 3.737559 TCATCCTGGCATACCTTTGTT 57.262 42.857 0.00 0.00 36.63 2.83
614 778 4.853468 TCATCCTGGCATACCTTTGTTA 57.147 40.909 0.00 0.00 36.63 2.41
615 779 4.523083 TCATCCTGGCATACCTTTGTTAC 58.477 43.478 0.00 0.00 36.63 2.50
616 780 4.227300 TCATCCTGGCATACCTTTGTTACT 59.773 41.667 0.00 0.00 36.63 2.24
617 781 4.650972 TCCTGGCATACCTTTGTTACTT 57.349 40.909 0.00 0.00 36.63 2.24
618 782 4.993028 TCCTGGCATACCTTTGTTACTTT 58.007 39.130 0.00 0.00 36.63 2.66
619 783 5.390387 TCCTGGCATACCTTTGTTACTTTT 58.610 37.500 0.00 0.00 36.63 2.27
620 784 5.836358 TCCTGGCATACCTTTGTTACTTTTT 59.164 36.000 0.00 0.00 36.63 1.94
655 819 8.799367 ACCTTGGTTACTTTTTGGTCATATTAC 58.201 33.333 0.00 0.00 0.00 1.89
693 871 6.910536 ACAATAAGCTGAGAAAAGGATACG 57.089 37.500 0.00 0.00 46.39 3.06
699 877 5.552178 AGCTGAGAAAAGGATACGAAAACT 58.448 37.500 0.00 0.00 46.39 2.66
787 968 5.351465 CGATTGAAATAGCCAGTGTGTTAGT 59.649 40.000 0.00 0.00 0.00 2.24
948 1129 7.148356 TGCTTGACAAGATAATGATCTGACAAC 60.148 37.037 19.51 0.00 41.87 3.32
949 1130 6.892310 TGACAAGATAATGATCTGACAACG 57.108 37.500 0.00 0.00 41.87 4.10
950 1131 5.291858 TGACAAGATAATGATCTGACAACGC 59.708 40.000 0.00 0.00 41.87 4.84
951 1132 4.268644 ACAAGATAATGATCTGACAACGCG 59.731 41.667 3.53 3.53 41.87 6.01
952 1133 4.046938 AGATAATGATCTGACAACGCGT 57.953 40.909 5.58 5.58 41.12 6.01
953 1134 4.045104 AGATAATGATCTGACAACGCGTC 58.955 43.478 14.44 0.00 41.12 5.19
960 1141 4.834828 GACAACGCGTCGAGTAGT 57.165 55.556 14.44 4.57 34.19 2.73
961 1142 3.083213 GACAACGCGTCGAGTAGTT 57.917 52.632 14.44 0.00 34.19 2.24
962 1143 1.402511 GACAACGCGTCGAGTAGTTT 58.597 50.000 14.44 0.00 34.19 2.66
963 1144 1.381429 GACAACGCGTCGAGTAGTTTC 59.619 52.381 14.44 0.00 34.19 2.78
964 1145 1.002033 ACAACGCGTCGAGTAGTTTCT 60.002 47.619 14.44 0.00 0.00 2.52
965 1146 2.049228 CAACGCGTCGAGTAGTTTCTT 58.951 47.619 14.44 0.00 0.00 2.52
966 1147 2.412421 ACGCGTCGAGTAGTTTCTTT 57.588 45.000 5.58 0.00 0.00 2.52
967 1148 2.735823 ACGCGTCGAGTAGTTTCTTTT 58.264 42.857 5.58 0.00 0.00 2.27
968 1149 3.118542 ACGCGTCGAGTAGTTTCTTTTT 58.881 40.909 5.58 0.00 0.00 1.94
1031 1214 7.618019 TTGAGATAGGTAAGCATGTTATCCT 57.382 36.000 9.58 9.58 0.00 3.24
1032 1215 8.721133 TTGAGATAGGTAAGCATGTTATCCTA 57.279 34.615 12.47 12.47 33.10 2.94
1058 1241 4.781621 TGGCTGATGATTCTAGGCATATCT 59.218 41.667 0.00 0.00 41.33 1.98
1059 1242 5.105023 TGGCTGATGATTCTAGGCATATCTC 60.105 44.000 0.00 0.00 41.33 2.75
1060 1243 5.129155 GGCTGATGATTCTAGGCATATCTCT 59.871 44.000 0.00 0.00 37.02 3.10
1061 1244 6.275335 GCTGATGATTCTAGGCATATCTCTC 58.725 44.000 0.00 0.00 0.00 3.20
1279 1462 8.664992 TGGCTGATCAAAAGGTACCAATATATA 58.335 33.333 15.94 0.00 0.00 0.86
1312 1503 3.160269 AGAAAGCATTTTCCACAGAGGG 58.840 45.455 0.00 0.00 42.99 4.30
1319 1510 6.672593 AGCATTTTCCACAGAGGGAATTATA 58.327 36.000 0.00 0.00 45.90 0.98
1322 1513 8.424133 GCATTTTCCACAGAGGGAATTATATTT 58.576 33.333 0.00 0.00 45.90 1.40
1363 1554 7.696992 TTTGATTTGGGTAGCCTTAGTTTAG 57.303 36.000 13.11 0.00 0.00 1.85
1365 1556 6.177610 TGATTTGGGTAGCCTTAGTTTAGTG 58.822 40.000 13.11 0.00 0.00 2.74
1369 1560 6.382919 TGGGTAGCCTTAGTTTAGTGATTT 57.617 37.500 13.11 0.00 0.00 2.17
1370 1561 6.786122 TGGGTAGCCTTAGTTTAGTGATTTT 58.214 36.000 13.11 0.00 0.00 1.82
1371 1562 7.920227 TGGGTAGCCTTAGTTTAGTGATTTTA 58.080 34.615 13.11 0.00 0.00 1.52
1372 1563 7.825761 TGGGTAGCCTTAGTTTAGTGATTTTAC 59.174 37.037 13.11 0.00 0.00 2.01
1413 1604 4.592778 ACACCATTCAGCTTAACCCATTTT 59.407 37.500 0.00 0.00 0.00 1.82
1505 1696 5.218139 GCATTGAGAAAAGGTTCTGTTCTG 58.782 41.667 5.19 0.00 44.42 3.02
1511 1702 5.238583 AGAAAAGGTTCTGTTCTGGTATCG 58.761 41.667 0.00 0.00 42.73 2.92
1676 1867 6.183360 CCAACTGCTTCTTTTGTAGAAAGTGA 60.183 38.462 0.00 0.00 42.19 3.41
1743 1934 6.226052 TCATAAGGTCATCATTCTCCAATCG 58.774 40.000 0.00 0.00 0.00 3.34
1837 2028 2.558359 CCTGTGGTTCATTTCCTTCACC 59.442 50.000 0.00 0.00 0.00 4.02
1998 2190 5.047847 CCTAGACTCGTGTTCTCTCTAGAG 58.952 50.000 13.98 13.98 43.36 2.43
2062 2260 8.527810 GGATGGTGATTTGTAATTCTAACCAAA 58.472 33.333 0.00 0.00 39.71 3.28
2065 2263 8.573035 TGGTGATTTGTAATTCTAACCAAACTC 58.427 33.333 0.00 0.00 33.67 3.01
2096 2294 2.069273 GTCGTTTGTCCATGACTCCTG 58.931 52.381 0.00 0.00 33.15 3.86
2129 2327 3.240631 GCGTTTTTCAAACTTGCTGACTC 59.759 43.478 0.00 0.00 0.00 3.36
2133 2331 4.621068 TTTCAAACTTGCTGACTCTGTG 57.379 40.909 0.00 0.00 0.00 3.66
2151 2349 2.546368 TGTGACATTCCGTTTCCTTTCG 59.454 45.455 0.00 0.00 0.00 3.46
2732 2933 0.536233 TGCTCGCTCTAGCCTCTAGG 60.536 60.000 0.00 0.00 42.05 3.02
2733 2934 0.250553 GCTCGCTCTAGCCTCTAGGA 60.251 60.000 0.00 0.00 36.45 2.94
2735 2936 2.083774 CTCGCTCTAGCCTCTAGGATG 58.916 57.143 0.00 0.00 37.91 3.51
3024 3246 1.831106 TGGTGTGTGCTAGGGACTATG 59.169 52.381 0.00 0.00 41.70 2.23
3077 3299 4.143179 GGTTCGTGTCGAAGGTTATTCTTG 60.143 45.833 4.84 0.00 46.54 3.02
3123 3345 4.201990 GGATCTGAGATGGTTTTCATGTGC 60.202 45.833 0.00 0.00 35.97 4.57
3146 3368 1.159285 CTGGAGCGTGCATTTTCTGA 58.841 50.000 0.00 0.00 0.00 3.27
3207 3429 4.100189 CCGGATTGAAAGTAGATGTCTCCT 59.900 45.833 0.00 0.00 0.00 3.69
3208 3430 5.302059 CCGGATTGAAAGTAGATGTCTCCTA 59.698 44.000 0.00 0.00 0.00 2.94
3209 3431 6.210078 CGGATTGAAAGTAGATGTCTCCTAC 58.790 44.000 0.00 0.00 37.38 3.18
3210 3432 6.517605 GGATTGAAAGTAGATGTCTCCTACC 58.482 44.000 0.00 0.00 37.74 3.18
3211 3433 6.098409 GGATTGAAAGTAGATGTCTCCTACCA 59.902 42.308 0.00 0.00 37.74 3.25
3212 3434 7.202047 GGATTGAAAGTAGATGTCTCCTACCAT 60.202 40.741 0.00 0.00 37.74 3.55
3213 3435 6.471233 TGAAAGTAGATGTCTCCTACCATG 57.529 41.667 0.00 0.00 37.74 3.66
3214 3436 4.946478 AAGTAGATGTCTCCTACCATGC 57.054 45.455 0.00 0.00 37.74 4.06
3215 3437 3.235200 AGTAGATGTCTCCTACCATGCC 58.765 50.000 0.00 0.00 37.74 4.40
3216 3438 1.428869 AGATGTCTCCTACCATGCCC 58.571 55.000 0.00 0.00 0.00 5.36
3217 3439 1.061812 AGATGTCTCCTACCATGCCCT 60.062 52.381 0.00 0.00 0.00 5.19
3218 3440 1.771255 GATGTCTCCTACCATGCCCTT 59.229 52.381 0.00 0.00 0.00 3.95
3219 3441 2.561209 TGTCTCCTACCATGCCCTTA 57.439 50.000 0.00 0.00 0.00 2.69
3220 3442 2.116238 TGTCTCCTACCATGCCCTTAC 58.884 52.381 0.00 0.00 0.00 2.34
3221 3443 2.116238 GTCTCCTACCATGCCCTTACA 58.884 52.381 0.00 0.00 0.00 2.41
3222 3444 2.504175 GTCTCCTACCATGCCCTTACAA 59.496 50.000 0.00 0.00 0.00 2.41
3223 3445 3.054655 GTCTCCTACCATGCCCTTACAAA 60.055 47.826 0.00 0.00 0.00 2.83
3224 3446 3.054655 TCTCCTACCATGCCCTTACAAAC 60.055 47.826 0.00 0.00 0.00 2.93
3225 3447 2.916934 TCCTACCATGCCCTTACAAACT 59.083 45.455 0.00 0.00 0.00 2.66
3226 3448 4.105577 TCCTACCATGCCCTTACAAACTA 58.894 43.478 0.00 0.00 0.00 2.24
3227 3449 4.080751 TCCTACCATGCCCTTACAAACTAC 60.081 45.833 0.00 0.00 0.00 2.73
3228 3450 4.080526 CCTACCATGCCCTTACAAACTACT 60.081 45.833 0.00 0.00 0.00 2.57
3229 3451 3.951663 ACCATGCCCTTACAAACTACTC 58.048 45.455 0.00 0.00 0.00 2.59
3230 3452 3.279434 CCATGCCCTTACAAACTACTCC 58.721 50.000 0.00 0.00 0.00 3.85
3231 3453 3.054361 CCATGCCCTTACAAACTACTCCT 60.054 47.826 0.00 0.00 0.00 3.69
3232 3454 4.567747 CCATGCCCTTACAAACTACTCCTT 60.568 45.833 0.00 0.00 0.00 3.36
3233 3455 4.281898 TGCCCTTACAAACTACTCCTTC 57.718 45.455 0.00 0.00 0.00 3.46
3234 3456 3.008704 TGCCCTTACAAACTACTCCTTCC 59.991 47.826 0.00 0.00 0.00 3.46
3235 3457 3.858247 CCCTTACAAACTACTCCTTCCG 58.142 50.000 0.00 0.00 0.00 4.30
3236 3458 3.260128 CCCTTACAAACTACTCCTTCCGT 59.740 47.826 0.00 0.00 0.00 4.69
3237 3459 4.492611 CCTTACAAACTACTCCTTCCGTC 58.507 47.826 0.00 0.00 0.00 4.79
3238 3460 2.719426 ACAAACTACTCCTTCCGTCG 57.281 50.000 0.00 0.00 0.00 5.12
3239 3461 1.336609 ACAAACTACTCCTTCCGTCGC 60.337 52.381 0.00 0.00 0.00 5.19
3245 3467 2.225068 ACTCCTTCCGTCGCATAATG 57.775 50.000 0.00 0.00 0.00 1.90
3250 3472 3.131577 TCCTTCCGTCGCATAATGTAAGT 59.868 43.478 0.00 0.00 0.00 2.24
3283 3505 3.119209 CCTTACAAACTACTCCCTCCGTC 60.119 52.174 0.00 0.00 0.00 4.79
3309 3531 9.805966 CGCATAATATAAGAGCGTTTTTGATAA 57.194 29.630 0.00 0.00 43.08 1.75
3315 3537 3.610911 AGAGCGTTTTTGATAAGGAGGG 58.389 45.455 0.00 0.00 0.00 4.30
3318 3540 4.259356 AGCGTTTTTGATAAGGAGGGTAC 58.741 43.478 0.00 0.00 0.00 3.34
3338 3560 5.050091 GGTACCAAAGTCATCATATTCGCAG 60.050 44.000 7.15 0.00 0.00 5.18
3344 3566 2.992543 GTCATCATATTCGCAGCCTCTC 59.007 50.000 0.00 0.00 0.00 3.20
3348 3570 2.074576 CATATTCGCAGCCTCTCCATG 58.925 52.381 0.00 0.00 0.00 3.66
3371 3593 3.681909 TTTTTAAGGCTGGGGCGAT 57.318 47.368 0.00 0.00 39.81 4.58
3398 3620 4.320202 GCAAACACAAGGTCGACATAATGT 60.320 41.667 18.91 14.96 0.00 2.71
3413 3635 8.869897 TCGACATAATGTGTTCTTCATAACTTC 58.130 33.333 0.00 0.00 42.36 3.01
3579 4001 2.435059 GTTGTCCGGGAGCAGAGC 60.435 66.667 0.00 0.00 0.00 4.09
3650 4095 1.353103 CGCATCCAGGAATGTTCGC 59.647 57.895 0.00 0.00 0.00 4.70
3677 4122 5.643777 CGCCAAGATTTAGGTGGATATAAGG 59.356 44.000 0.00 0.00 34.05 2.69
3678 4123 6.520061 CGCCAAGATTTAGGTGGATATAAGGA 60.520 42.308 0.00 0.00 34.05 3.36
3679 4124 7.231467 GCCAAGATTTAGGTGGATATAAGGAA 58.769 38.462 0.00 0.00 34.05 3.36
3680 4125 7.724061 GCCAAGATTTAGGTGGATATAAGGAAA 59.276 37.037 0.00 0.00 34.05 3.13
3681 4126 9.289782 CCAAGATTTAGGTGGATATAAGGAAAG 57.710 37.037 0.00 0.00 34.05 2.62
3732 4177 2.405191 GCTTGCGGGCTCGATTTC 59.595 61.111 12.03 0.00 39.00 2.17
3747 4192 5.873179 TCGATTTCGAGTTGCCTAAAAAT 57.127 34.783 0.00 0.00 44.22 1.82
3748 4193 6.971527 TCGATTTCGAGTTGCCTAAAAATA 57.028 33.333 0.00 0.00 44.22 1.40
3749 4194 7.548196 TCGATTTCGAGTTGCCTAAAAATAT 57.452 32.000 0.00 0.00 44.22 1.28
3750 4195 7.406553 TCGATTTCGAGTTGCCTAAAAATATG 58.593 34.615 0.00 0.00 44.22 1.78
3752 4197 4.893424 TCGAGTTGCCTAAAAATATGGC 57.107 40.909 0.00 0.00 46.26 4.40
3759 4204 4.425577 GCCTAAAAATATGGCGATGGAG 57.574 45.455 0.00 0.00 37.11 3.86
3760 4205 3.366374 GCCTAAAAATATGGCGATGGAGC 60.366 47.826 0.00 0.00 37.11 4.70
3761 4206 3.120199 CCTAAAAATATGGCGATGGAGCG 60.120 47.826 0.00 0.00 38.18 5.03
3769 4214 4.348857 CGATGGAGCGCATGATGA 57.651 55.556 11.47 0.00 0.00 2.92
3770 4215 2.836944 CGATGGAGCGCATGATGAT 58.163 52.632 11.47 0.00 0.00 2.45
3771 4216 1.154197 CGATGGAGCGCATGATGATT 58.846 50.000 11.47 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.840005 GGGGGAAAGCCTCGCGAG 62.840 72.222 29.06 29.06 37.88 5.03
3 4 3.978571 GACAGGGGGAAAGCCTCGC 62.979 68.421 0.00 0.00 34.47 5.03
4 5 0.976073 TAGACAGGGGGAAAGCCTCG 60.976 60.000 0.00 0.00 34.47 4.63
5 6 0.833949 CTAGACAGGGGGAAAGCCTC 59.166 60.000 0.00 0.00 0.00 4.70
6 7 1.275421 GCTAGACAGGGGGAAAGCCT 61.275 60.000 0.00 0.00 0.00 4.58
7 8 1.224870 GCTAGACAGGGGGAAAGCC 59.775 63.158 0.00 0.00 0.00 4.35
8 9 1.224870 GGCTAGACAGGGGGAAAGC 59.775 63.158 0.00 0.00 0.00 3.51
9 10 1.636769 GGGGCTAGACAGGGGGAAAG 61.637 65.000 0.00 0.00 0.00 2.62
10 11 1.618447 GGGGCTAGACAGGGGGAAA 60.618 63.158 0.00 0.00 0.00 3.13
11 12 2.042261 GGGGCTAGACAGGGGGAA 59.958 66.667 0.00 0.00 0.00 3.97
12 13 4.475444 CGGGGCTAGACAGGGGGA 62.475 72.222 0.00 0.00 0.00 4.81
13 14 4.798682 ACGGGGCTAGACAGGGGG 62.799 72.222 0.00 0.00 0.00 5.40
14 15 0.979187 TAAACGGGGCTAGACAGGGG 60.979 60.000 0.00 0.00 0.00 4.79
15 16 0.464452 CTAAACGGGGCTAGACAGGG 59.536 60.000 0.00 0.00 0.00 4.45
16 17 0.179081 GCTAAACGGGGCTAGACAGG 60.179 60.000 0.00 0.00 0.00 4.00
17 18 0.527817 CGCTAAACGGGGCTAGACAG 60.528 60.000 0.00 0.00 38.44 3.51
18 19 1.514087 CGCTAAACGGGGCTAGACA 59.486 57.895 0.00 0.00 38.44 3.41
19 20 1.881709 GCGCTAAACGGGGCTAGAC 60.882 63.158 0.00 0.00 43.93 2.59
20 21 2.292794 CTGCGCTAAACGGGGCTAGA 62.293 60.000 9.73 0.00 43.97 2.43
21 22 1.883084 CTGCGCTAAACGGGGCTAG 60.883 63.158 9.73 0.00 43.97 3.42
22 23 2.185867 CTGCGCTAAACGGGGCTA 59.814 61.111 9.73 0.00 43.97 3.93
23 24 4.778143 CCTGCGCTAAACGGGGCT 62.778 66.667 9.73 0.00 43.97 5.19
127 128 2.904866 CGGAGAGGAGAGGCGAGG 60.905 72.222 0.00 0.00 0.00 4.63
128 129 2.124487 ACGGAGAGGAGAGGCGAG 60.124 66.667 0.00 0.00 0.00 5.03
129 130 2.124653 GACGGAGAGGAGAGGCGA 60.125 66.667 0.00 0.00 0.00 5.54
130 131 2.124487 AGACGGAGAGGAGAGGCG 60.124 66.667 0.00 0.00 0.00 5.52
131 132 0.395173 AAGAGACGGAGAGGAGAGGC 60.395 60.000 0.00 0.00 0.00 4.70
285 295 2.202756 GACGCACCTGTCCGATCC 60.203 66.667 0.00 0.00 32.61 3.36
312 322 2.871427 GCTGTTAGATTCGCCCGCG 61.871 63.158 0.00 0.00 41.35 6.46
392 551 2.237643 AGTCACCACTACCACAAACACA 59.762 45.455 0.00 0.00 0.00 3.72
402 561 6.674760 GCGGAATAATTTTCAGTCACCACTAC 60.675 42.308 0.00 0.00 0.00 2.73
404 563 4.156008 GCGGAATAATTTTCAGTCACCACT 59.844 41.667 0.00 0.00 0.00 4.00
449 608 1.734465 CAGCAATTCCACGAGTTCTCC 59.266 52.381 0.00 0.00 0.00 3.71
450 609 2.688507 TCAGCAATTCCACGAGTTCTC 58.311 47.619 0.00 0.00 0.00 2.87
545 706 5.591099 CATGGTATAATTTCAGTTGGTGGC 58.409 41.667 0.00 0.00 0.00 5.01
563 724 8.739972 CCTTCTTTTTACTAGTAATTGCATGGT 58.260 33.333 15.92 0.00 0.00 3.55
620 784 9.872721 CCAAAAAGTAACCAAGGTAAGTTAAAA 57.127 29.630 0.00 0.00 30.64 1.52
621 785 9.033711 ACCAAAAAGTAACCAAGGTAAGTTAAA 57.966 29.630 0.00 0.00 30.64 1.52
622 786 8.592529 ACCAAAAAGTAACCAAGGTAAGTTAA 57.407 30.769 0.00 0.00 30.64 2.01
623 787 7.833183 TGACCAAAAAGTAACCAAGGTAAGTTA 59.167 33.333 0.00 0.00 0.00 2.24
624 788 6.664384 TGACCAAAAAGTAACCAAGGTAAGTT 59.336 34.615 0.00 0.00 0.00 2.66
625 789 6.189133 TGACCAAAAAGTAACCAAGGTAAGT 58.811 36.000 0.00 0.00 0.00 2.24
626 790 6.702716 TGACCAAAAAGTAACCAAGGTAAG 57.297 37.500 0.00 0.00 0.00 2.34
627 791 8.943594 ATATGACCAAAAAGTAACCAAGGTAA 57.056 30.769 0.00 0.00 0.00 2.85
628 792 8.943594 AATATGACCAAAAAGTAACCAAGGTA 57.056 30.769 0.00 0.00 0.00 3.08
629 793 7.849322 AATATGACCAAAAAGTAACCAAGGT 57.151 32.000 0.00 0.00 0.00 3.50
630 794 8.798402 TGTAATATGACCAAAAAGTAACCAAGG 58.202 33.333 0.00 0.00 0.00 3.61
668 832 8.421784 TCGTATCCTTTTCTCAGCTTATTGTAT 58.578 33.333 0.00 0.00 0.00 2.29
669 833 7.778083 TCGTATCCTTTTCTCAGCTTATTGTA 58.222 34.615 0.00 0.00 0.00 2.41
670 834 6.640518 TCGTATCCTTTTCTCAGCTTATTGT 58.359 36.000 0.00 0.00 0.00 2.71
671 835 7.539712 TTCGTATCCTTTTCTCAGCTTATTG 57.460 36.000 0.00 0.00 0.00 1.90
682 860 5.060940 GCATGCAAGTTTTCGTATCCTTTTC 59.939 40.000 14.21 0.00 0.00 2.29
693 871 6.810182 AGATGTTATTGAGCATGCAAGTTTTC 59.190 34.615 21.98 7.99 0.00 2.29
699 877 6.602803 TCCTTAAGATGTTATTGAGCATGCAA 59.397 34.615 21.98 6.70 0.00 4.08
763 941 4.685169 AACACACTGGCTATTTCAATCG 57.315 40.909 0.00 0.00 0.00 3.34
900 1081 6.316140 AGCATAAGATTTGCGTCTTAACATCA 59.684 34.615 9.24 0.00 44.82 3.07
948 1129 3.765505 AAAAAGAAACTACTCGACGCG 57.234 42.857 3.53 3.53 0.00 6.01
965 1146 3.058085 GCGTTCCACCCTTTATCGAAAAA 60.058 43.478 0.00 0.00 0.00 1.94
966 1147 2.485038 GCGTTCCACCCTTTATCGAAAA 59.515 45.455 0.00 0.00 0.00 2.29
967 1148 2.078392 GCGTTCCACCCTTTATCGAAA 58.922 47.619 0.00 0.00 0.00 3.46
968 1149 1.729284 GCGTTCCACCCTTTATCGAA 58.271 50.000 0.00 0.00 0.00 3.71
969 1150 0.458889 CGCGTTCCACCCTTTATCGA 60.459 55.000 0.00 0.00 0.00 3.59
970 1151 0.738412 ACGCGTTCCACCCTTTATCG 60.738 55.000 5.58 0.00 0.00 2.92
971 1152 1.004595 GACGCGTTCCACCCTTTATC 58.995 55.000 15.53 0.00 0.00 1.75
972 1153 0.738412 CGACGCGTTCCACCCTTTAT 60.738 55.000 15.53 0.00 0.00 1.40
973 1154 1.373246 CGACGCGTTCCACCCTTTA 60.373 57.895 15.53 0.00 0.00 1.85
974 1155 2.663852 CGACGCGTTCCACCCTTT 60.664 61.111 15.53 0.00 0.00 3.11
975 1156 3.569049 CTCGACGCGTTCCACCCTT 62.569 63.158 15.53 0.00 0.00 3.95
976 1157 4.052229 CTCGACGCGTTCCACCCT 62.052 66.667 15.53 0.00 0.00 4.34
977 1158 2.862347 CTACTCGACGCGTTCCACCC 62.862 65.000 15.53 0.00 0.00 4.61
978 1159 1.513586 CTACTCGACGCGTTCCACC 60.514 63.158 15.53 0.00 0.00 4.61
979 1160 1.063951 CACTACTCGACGCGTTCCAC 61.064 60.000 15.53 0.00 0.00 4.02
980 1161 1.208358 CACTACTCGACGCGTTCCA 59.792 57.895 15.53 0.00 0.00 3.53
981 1162 0.110056 TTCACTACTCGACGCGTTCC 60.110 55.000 15.53 0.00 0.00 3.62
982 1163 1.136141 TCTTCACTACTCGACGCGTTC 60.136 52.381 15.53 5.86 0.00 3.95
983 1164 0.870393 TCTTCACTACTCGACGCGTT 59.130 50.000 15.53 0.00 0.00 4.84
984 1165 1.085091 ATCTTCACTACTCGACGCGT 58.915 50.000 13.85 13.85 0.00 6.01
1031 1214 3.711190 TGCCTAGAATCATCAGCCAAGTA 59.289 43.478 0.00 0.00 0.00 2.24
1032 1215 2.507058 TGCCTAGAATCATCAGCCAAGT 59.493 45.455 0.00 0.00 0.00 3.16
1058 1241 1.481363 CAAGCCTGCATCAGAGAGAGA 59.519 52.381 0.00 0.00 32.44 3.10
1059 1242 1.942677 CAAGCCTGCATCAGAGAGAG 58.057 55.000 0.00 0.00 32.44 3.20
1279 1462 7.178983 TGGAAAATGCTTTCTCCAATGACTAAT 59.821 33.333 4.96 0.00 40.76 1.73
1285 1468 4.885413 TGTGGAAAATGCTTTCTCCAATG 58.115 39.130 8.85 0.00 40.76 2.82
1288 1471 3.822735 CTCTGTGGAAAATGCTTTCTCCA 59.177 43.478 3.33 3.33 40.76 3.86
1291 1474 3.160269 CCCTCTGTGGAAAATGCTTTCT 58.840 45.455 0.00 0.00 40.76 2.52
1294 1477 2.978156 TCCCTCTGTGGAAAATGCTT 57.022 45.000 0.00 0.00 38.35 3.91
1295 1478 2.978156 TTCCCTCTGTGGAAAATGCT 57.022 45.000 0.00 0.00 41.40 3.79
1296 1479 5.859205 ATAATTCCCTCTGTGGAAAATGC 57.141 39.130 0.00 0.00 46.99 3.56
1322 1513 8.420222 CCAAATCAAATTGTACCATGCCTAATA 58.580 33.333 0.00 0.00 0.00 0.98
1323 1514 7.274447 CCAAATCAAATTGTACCATGCCTAAT 58.726 34.615 0.00 0.00 0.00 1.73
1324 1515 6.351711 CCCAAATCAAATTGTACCATGCCTAA 60.352 38.462 0.00 0.00 0.00 2.69
1348 1539 9.445878 AAGTAAAATCACTAAACTAAGGCTACC 57.554 33.333 0.00 0.00 0.00 3.18
1369 1560 8.092068 TGGTGTCTTTGATCTCGAAATAAGTAA 58.908 33.333 0.00 0.00 0.00 2.24
1370 1561 7.608153 TGGTGTCTTTGATCTCGAAATAAGTA 58.392 34.615 0.00 0.00 0.00 2.24
1371 1562 6.464222 TGGTGTCTTTGATCTCGAAATAAGT 58.536 36.000 0.00 0.00 0.00 2.24
1372 1563 6.968131 TGGTGTCTTTGATCTCGAAATAAG 57.032 37.500 0.00 0.00 0.00 1.73
1380 1571 4.260170 AGCTGAATGGTGTCTTTGATCTC 58.740 43.478 0.00 0.00 0.00 2.75
1390 1581 2.969821 TGGGTTAAGCTGAATGGTGT 57.030 45.000 4.41 0.00 0.00 4.16
1505 1696 1.668419 ACATCAAGCCAAGCGATACC 58.332 50.000 0.00 0.00 0.00 2.73
1511 1702 2.035066 AGTGTCAAACATCAAGCCAAGC 59.965 45.455 0.00 0.00 0.00 4.01
1713 1904 6.876257 GGAGAATGATGACCTTATGATGTACC 59.124 42.308 0.00 0.00 0.00 3.34
1724 1915 2.437281 AGCGATTGGAGAATGATGACCT 59.563 45.455 0.00 0.00 0.00 3.85
1743 1934 7.878408 GTTTTGTAAAACATATCTCGCTAGC 57.122 36.000 4.06 4.06 45.72 3.42
1817 2008 2.226437 CGGTGAAGGAAATGAACCACAG 59.774 50.000 0.00 0.00 0.00 3.66
1944 2136 2.945008 CTGTAACCACCATGGCATAGTG 59.055 50.000 17.60 17.60 42.67 2.74
2029 2221 8.526147 AGAATTACAAATCACCATCCTTTTCAG 58.474 33.333 0.00 0.00 0.00 3.02
2062 2260 5.007385 ACAAACGACAGAACAAGTAGAGT 57.993 39.130 0.00 0.00 0.00 3.24
2065 2263 4.116961 TGGACAAACGACAGAACAAGTAG 58.883 43.478 0.00 0.00 0.00 2.57
2070 2268 2.869801 GTCATGGACAAACGACAGAACA 59.130 45.455 0.00 0.00 32.09 3.18
2096 2294 3.740044 TGAAAAACGCAGCAGCTATAC 57.260 42.857 0.00 0.00 39.10 1.47
2129 2327 3.363970 CGAAAGGAAACGGAATGTCACAG 60.364 47.826 0.00 0.00 0.00 3.66
2133 2331 1.135774 GGCGAAAGGAAACGGAATGTC 60.136 52.381 0.00 0.00 0.00 3.06
2151 2349 1.009389 CCTCGAACTCGTTGTCTGGC 61.009 60.000 0.00 0.00 40.80 4.85
2701 2899 1.080974 GCGAGCAAGCAAGCAACAT 60.081 52.632 3.19 0.00 36.85 2.71
2702 2900 2.121564 GAGCGAGCAAGCAAGCAACA 62.122 55.000 12.73 0.00 40.15 3.33
2703 2901 1.441682 GAGCGAGCAAGCAAGCAAC 60.442 57.895 12.73 4.62 40.15 4.17
2704 2902 0.320683 TAGAGCGAGCAAGCAAGCAA 60.321 50.000 12.73 0.00 40.15 3.91
2705 2903 0.738762 CTAGAGCGAGCAAGCAAGCA 60.739 55.000 12.73 0.00 40.15 3.91
2706 2904 2.005220 CTAGAGCGAGCAAGCAAGC 58.995 57.895 6.21 4.06 40.15 4.01
2707 2905 1.427592 GGCTAGAGCGAGCAAGCAAG 61.428 60.000 15.35 2.12 44.76 4.01
2717 2918 1.904287 ACATCCTAGAGGCTAGAGCG 58.096 55.000 0.00 0.00 43.26 5.03
2732 2933 1.264020 TCACACAAGCGAGCAAACATC 59.736 47.619 0.00 0.00 0.00 3.06
2733 2934 1.308047 TCACACAAGCGAGCAAACAT 58.692 45.000 0.00 0.00 0.00 2.71
2735 2936 2.046313 CAATCACACAAGCGAGCAAAC 58.954 47.619 0.00 0.00 0.00 2.93
2857 3071 0.546267 AGGTCAGAGCACCAGGACAT 60.546 55.000 1.66 0.00 39.16 3.06
2914 3128 3.310860 AACGGATCTCGCCACCCAC 62.311 63.158 3.85 0.00 43.89 4.61
3024 3246 1.278637 CCGCAAACAGACCGACAAC 59.721 57.895 0.00 0.00 0.00 3.32
3077 3299 2.766970 TAAACAGCAACGGCAAGAAC 57.233 45.000 0.00 0.00 44.61 3.01
3123 3345 0.877071 AAAATGCACGCTCCAGAGTG 59.123 50.000 6.67 6.67 46.42 3.51
3207 3429 4.080751 GGAGTAGTTTGTAAGGGCATGGTA 60.081 45.833 0.00 0.00 0.00 3.25
3208 3430 3.308188 GGAGTAGTTTGTAAGGGCATGGT 60.308 47.826 0.00 0.00 0.00 3.55
3209 3431 3.054361 AGGAGTAGTTTGTAAGGGCATGG 60.054 47.826 0.00 0.00 0.00 3.66
3210 3432 4.222124 AGGAGTAGTTTGTAAGGGCATG 57.778 45.455 0.00 0.00 0.00 4.06
3211 3433 4.324331 GGAAGGAGTAGTTTGTAAGGGCAT 60.324 45.833 0.00 0.00 0.00 4.40
3212 3434 3.008704 GGAAGGAGTAGTTTGTAAGGGCA 59.991 47.826 0.00 0.00 0.00 5.36
3213 3435 3.607741 GGAAGGAGTAGTTTGTAAGGGC 58.392 50.000 0.00 0.00 0.00 5.19
3214 3436 3.260128 ACGGAAGGAGTAGTTTGTAAGGG 59.740 47.826 0.00 0.00 0.00 3.95
3215 3437 4.492611 GACGGAAGGAGTAGTTTGTAAGG 58.507 47.826 0.00 0.00 0.00 2.69
3216 3438 4.164294 CGACGGAAGGAGTAGTTTGTAAG 58.836 47.826 0.00 0.00 0.00 2.34
3217 3439 3.612479 GCGACGGAAGGAGTAGTTTGTAA 60.612 47.826 0.00 0.00 0.00 2.41
3218 3440 2.095059 GCGACGGAAGGAGTAGTTTGTA 60.095 50.000 0.00 0.00 0.00 2.41
3219 3441 1.336609 GCGACGGAAGGAGTAGTTTGT 60.337 52.381 0.00 0.00 0.00 2.83
3220 3442 1.336517 TGCGACGGAAGGAGTAGTTTG 60.337 52.381 0.00 0.00 0.00 2.93
3221 3443 0.963962 TGCGACGGAAGGAGTAGTTT 59.036 50.000 0.00 0.00 0.00 2.66
3222 3444 1.183549 ATGCGACGGAAGGAGTAGTT 58.816 50.000 0.00 0.00 0.00 2.24
3223 3445 2.048444 TATGCGACGGAAGGAGTAGT 57.952 50.000 0.00 0.00 0.00 2.73
3224 3446 3.243434 ACATTATGCGACGGAAGGAGTAG 60.243 47.826 0.00 0.00 0.00 2.57
3225 3447 2.691526 ACATTATGCGACGGAAGGAGTA 59.308 45.455 0.00 0.00 0.00 2.59
3226 3448 1.480954 ACATTATGCGACGGAAGGAGT 59.519 47.619 0.00 0.00 0.00 3.85
3227 3449 2.225068 ACATTATGCGACGGAAGGAG 57.775 50.000 0.00 0.00 0.00 3.69
3228 3450 3.131577 ACTTACATTATGCGACGGAAGGA 59.868 43.478 0.00 0.00 0.00 3.36
3229 3451 3.245284 CACTTACATTATGCGACGGAAGG 59.755 47.826 0.00 0.00 0.00 3.46
3230 3452 3.302480 GCACTTACATTATGCGACGGAAG 60.302 47.826 0.00 0.00 0.00 3.46
3231 3453 2.605818 GCACTTACATTATGCGACGGAA 59.394 45.455 0.00 0.00 0.00 4.30
3232 3454 2.198406 GCACTTACATTATGCGACGGA 58.802 47.619 0.00 0.00 0.00 4.69
3233 3455 2.645628 GCACTTACATTATGCGACGG 57.354 50.000 0.00 0.00 0.00 4.79
3238 3460 3.849645 GCATGGTCGCACTTACATTATGC 60.850 47.826 0.00 0.00 35.96 3.14
3239 3461 3.303990 GGCATGGTCGCACTTACATTATG 60.304 47.826 0.00 0.00 0.00 1.90
3245 3467 1.078426 AGGGCATGGTCGCACTTAC 60.078 57.895 0.00 0.00 45.69 2.34
3250 3472 0.250945 TTTGTAAGGGCATGGTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
3253 3475 3.939592 GAGTAGTTTGTAAGGGCATGGTC 59.060 47.826 0.00 0.00 0.00 4.02
3307 3529 4.431378 TGATGACTTTGGTACCCTCCTTA 58.569 43.478 10.07 0.00 0.00 2.69
3309 3531 2.915869 TGATGACTTTGGTACCCTCCT 58.084 47.619 10.07 0.00 0.00 3.69
3310 3532 3.933861 ATGATGACTTTGGTACCCTCC 57.066 47.619 10.07 0.00 0.00 4.30
3315 3537 5.559035 GCTGCGAATATGATGACTTTGGTAC 60.559 44.000 0.00 0.00 0.00 3.34
3318 3540 3.304257 GGCTGCGAATATGATGACTTTGG 60.304 47.826 0.00 0.00 0.00 3.28
3355 3577 1.319614 GCAATCGCCCCAGCCTTAAA 61.320 55.000 0.00 0.00 34.57 1.52
3356 3578 1.752694 GCAATCGCCCCAGCCTTAA 60.753 57.895 0.00 0.00 34.57 1.85
3357 3579 2.124320 GCAATCGCCCCAGCCTTA 60.124 61.111 0.00 0.00 34.57 2.69
3368 3590 0.317770 ACCTTGTGTTTGCGCAATCG 60.318 50.000 25.64 12.02 43.20 3.34
3369 3591 1.408422 GACCTTGTGTTTGCGCAATC 58.592 50.000 25.64 23.28 43.20 2.67
3370 3592 0.317770 CGACCTTGTGTTTGCGCAAT 60.318 50.000 25.64 5.90 43.20 3.56
3371 3593 1.063327 CGACCTTGTGTTTGCGCAA 59.937 52.632 21.02 21.02 42.14 4.85
3382 3604 5.408299 TGAAGAACACATTATGTCGACCTTG 59.592 40.000 14.12 7.75 42.31 3.61
3384 3606 5.147330 TGAAGAACACATTATGTCGACCT 57.853 39.130 14.12 5.73 42.31 3.85
3398 3620 8.433421 ACGAAAAAGAGAAGTTATGAAGAACA 57.567 30.769 0.00 0.00 0.00 3.18
3449 3671 6.573664 TTGTGGGACTGTTTGATCTAAATG 57.426 37.500 0.00 0.00 0.00 2.32
3492 3714 8.189119 TGGCTCAACCATTCTTTATTTTAGTT 57.811 30.769 0.00 0.00 46.36 2.24
3558 3980 4.308458 TGCTCCCGGACAACCACG 62.308 66.667 0.73 0.00 35.59 4.94
3600 4022 3.443045 GTGGCCCACATCCTTGCG 61.443 66.667 9.55 0.00 34.08 4.85
3601 4023 1.907807 TTGTGGCCCACATCCTTGC 60.908 57.895 19.05 0.00 44.16 4.01
3602 4024 1.865788 CGTTGTGGCCCACATCCTTG 61.866 60.000 19.05 2.22 44.16 3.61
3604 4026 2.034066 CGTTGTGGCCCACATCCT 59.966 61.111 19.05 0.00 44.16 3.24
3605 4027 3.061848 CCGTTGTGGCCCACATCC 61.062 66.667 19.05 10.57 44.16 3.51
3650 4095 1.714899 CCACCTAAATCTTGGCGCCG 61.715 60.000 23.90 8.74 0.00 6.46
3681 4126 1.300931 TTGAGCGAGGCGATATGGC 60.301 57.895 0.27 0.27 45.27 4.40
3752 4197 1.154197 AATCATCATGCGCTCCATCG 58.846 50.000 9.73 0.00 29.71 3.84



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.