Multiple sequence alignment - TraesCS2D01G146000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G146000
chr2D
100.000
2220
0
0
1
2220
87749390
87747171
0.000000e+00
4100.0
1
TraesCS2D01G146000
chr2D
100.000
1071
0
0
2702
3772
87746689
87745619
0.000000e+00
1978.0
2
TraesCS2D01G146000
chr2D
100.000
29
0
0
956
984
644995303
644995331
2.000000e-03
54.7
3
TraesCS2D01G146000
chr2B
91.580
1247
80
16
984
2220
140787722
140786491
0.000000e+00
1698.0
4
TraesCS2D01G146000
chr2B
90.205
929
51
18
38
961
140788601
140787708
0.000000e+00
1175.0
5
TraesCS2D01G146000
chr2B
92.767
553
22
12
2705
3254
140786406
140785869
0.000000e+00
784.0
6
TraesCS2D01G146000
chr2B
90.823
316
23
6
3236
3551
140785932
140785623
5.830000e-113
418.0
7
TraesCS2D01G146000
chr2B
86.364
242
12
11
3536
3757
140785436
140785196
1.050000e-60
244.0
8
TraesCS2D01G146000
chr2B
93.023
43
3
0
3263
3305
50286152
50286194
3.150000e-06
63.9
9
TraesCS2D01G146000
chr2A
90.815
1252
90
18
984
2220
87892463
87891222
0.000000e+00
1652.0
10
TraesCS2D01G146000
chr2A
88.712
629
50
15
342
961
87893065
87892449
0.000000e+00
749.0
11
TraesCS2D01G146000
chr2A
89.885
524
21
11
2702
3207
87891154
87890645
0.000000e+00
645.0
12
TraesCS2D01G146000
chr2A
94.500
200
6
3
25
220
87893534
87893336
1.700000e-78
303.0
13
TraesCS2D01G146000
chr2A
97.297
37
1
0
3270
3306
757639532
757639568
3.150000e-06
63.9
14
TraesCS2D01G146000
chr7D
100.000
36
0
0
3268
3303
148147620
148147655
2.430000e-07
67.6
15
TraesCS2D01G146000
chr3B
97.436
39
1
0
3269
3307
814550203
814550241
2.430000e-07
67.6
16
TraesCS2D01G146000
chr1D
97.436
39
1
0
3271
3309
486746278
486746316
2.430000e-07
67.6
17
TraesCS2D01G146000
chr3A
95.000
40
2
0
3270
3309
514095776
514095815
3.150000e-06
63.9
18
TraesCS2D01G146000
chr5B
97.222
36
1
0
3272
3307
114907077
114907042
1.130000e-05
62.1
19
TraesCS2D01G146000
chr7A
89.130
46
5
0
3264
3309
655373763
655373808
1.460000e-04
58.4
20
TraesCS2D01G146000
chr5A
100.000
28
0
0
46
73
37933725
37933698
7.000000e-03
52.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G146000
chr2D
87745619
87749390
3771
True
3039.00
4100
100.0000
1
3772
2
chr2D.!!$R1
3771
1
TraesCS2D01G146000
chr2B
140785196
140788601
3405
True
863.80
1698
90.3478
38
3757
5
chr2B.!!$R1
3719
2
TraesCS2D01G146000
chr2A
87890645
87893534
2889
True
837.25
1652
90.9780
25
3207
4
chr2A.!!$R1
3182
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
36
37
0.527817
CTGTCTAGCCCCGTTTAGCG
60.528
60.000
0.00
0.0
40.95
4.26
F
964
1145
1.002033
ACAACGCGTCGAGTAGTTTCT
60.002
47.619
14.44
0.0
0.00
2.52
F
965
1146
2.049228
CAACGCGTCGAGTAGTTTCTT
58.951
47.619
14.44
0.0
0.00
2.52
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1058
1241
1.481363
CAAGCCTGCATCAGAGAGAGA
59.519
52.381
0.00
0.0
32.44
3.10
R
2704
2902
0.320683
TAGAGCGAGCAAGCAAGCAA
60.321
50.000
12.73
0.0
40.15
3.91
R
2857
3071
0.546267
AGGTCAGAGCACCAGGACAT
60.546
55.000
1.66
0.0
39.16
3.06
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
4.840005
CTCGCGAGGCTTTCCCCC
62.840
72.222
28.40
0.00
0.00
5.40
20
21
4.035102
GCGAGGCTTTCCCCCTGT
62.035
66.667
0.00
0.00
31.41
4.00
21
22
2.269241
CGAGGCTTTCCCCCTGTC
59.731
66.667
0.00
0.00
31.41
3.51
22
23
2.294078
CGAGGCTTTCCCCCTGTCT
61.294
63.158
0.00
0.00
31.41
3.41
23
24
0.976073
CGAGGCTTTCCCCCTGTCTA
60.976
60.000
0.00
0.00
31.41
2.59
28
29
1.618447
TTTCCCCCTGTCTAGCCCC
60.618
63.158
0.00
0.00
0.00
5.80
36
37
0.527817
CTGTCTAGCCCCGTTTAGCG
60.528
60.000
0.00
0.00
40.95
4.26
131
132
4.813526
CAGCGACGACCGTCCTCG
62.814
72.222
15.74
13.59
41.76
4.63
194
200
3.799755
GCCACGCAACGATCCACC
61.800
66.667
0.00
0.00
0.00
4.61
195
201
3.487202
CCACGCAACGATCCACCG
61.487
66.667
0.00
0.00
0.00
4.94
392
551
4.279326
GGGGACGAGGCATCTAGT
57.721
61.111
0.00
0.00
0.00
2.57
402
561
2.744202
GAGGCATCTAGTGTGTTTGTGG
59.256
50.000
0.00
0.00
0.00
4.17
404
563
3.326588
AGGCATCTAGTGTGTTTGTGGTA
59.673
43.478
0.00
0.00
0.00
3.25
545
706
1.679032
GGGAATCAGTCCTTTCCACCG
60.679
57.143
0.00
0.00
46.92
4.94
563
724
3.692101
CACCGCCACCAACTGAAATTATA
59.308
43.478
0.00
0.00
0.00
0.98
569
730
5.591099
CCACCAACTGAAATTATACCATGC
58.409
41.667
0.00
0.00
0.00
4.06
607
771
1.212935
AGGTGTTCATCCTGGCATACC
59.787
52.381
0.00
0.00
33.62
2.73
608
772
1.212935
GGTGTTCATCCTGGCATACCT
59.787
52.381
0.00
0.00
36.63
3.08
609
773
2.357154
GGTGTTCATCCTGGCATACCTT
60.357
50.000
0.00
0.00
36.63
3.50
610
774
3.356290
GTGTTCATCCTGGCATACCTTT
58.644
45.455
0.00
0.00
36.63
3.11
611
775
3.129287
GTGTTCATCCTGGCATACCTTTG
59.871
47.826
0.00
0.00
36.63
2.77
612
776
3.245229
TGTTCATCCTGGCATACCTTTGT
60.245
43.478
0.00
0.00
36.63
2.83
613
777
3.737559
TCATCCTGGCATACCTTTGTT
57.262
42.857
0.00
0.00
36.63
2.83
614
778
4.853468
TCATCCTGGCATACCTTTGTTA
57.147
40.909
0.00
0.00
36.63
2.41
615
779
4.523083
TCATCCTGGCATACCTTTGTTAC
58.477
43.478
0.00
0.00
36.63
2.50
616
780
4.227300
TCATCCTGGCATACCTTTGTTACT
59.773
41.667
0.00
0.00
36.63
2.24
617
781
4.650972
TCCTGGCATACCTTTGTTACTT
57.349
40.909
0.00
0.00
36.63
2.24
618
782
4.993028
TCCTGGCATACCTTTGTTACTTT
58.007
39.130
0.00
0.00
36.63
2.66
619
783
5.390387
TCCTGGCATACCTTTGTTACTTTT
58.610
37.500
0.00
0.00
36.63
2.27
620
784
5.836358
TCCTGGCATACCTTTGTTACTTTTT
59.164
36.000
0.00
0.00
36.63
1.94
655
819
8.799367
ACCTTGGTTACTTTTTGGTCATATTAC
58.201
33.333
0.00
0.00
0.00
1.89
693
871
6.910536
ACAATAAGCTGAGAAAAGGATACG
57.089
37.500
0.00
0.00
46.39
3.06
699
877
5.552178
AGCTGAGAAAAGGATACGAAAACT
58.448
37.500
0.00
0.00
46.39
2.66
787
968
5.351465
CGATTGAAATAGCCAGTGTGTTAGT
59.649
40.000
0.00
0.00
0.00
2.24
948
1129
7.148356
TGCTTGACAAGATAATGATCTGACAAC
60.148
37.037
19.51
0.00
41.87
3.32
949
1130
6.892310
TGACAAGATAATGATCTGACAACG
57.108
37.500
0.00
0.00
41.87
4.10
950
1131
5.291858
TGACAAGATAATGATCTGACAACGC
59.708
40.000
0.00
0.00
41.87
4.84
951
1132
4.268644
ACAAGATAATGATCTGACAACGCG
59.731
41.667
3.53
3.53
41.87
6.01
952
1133
4.046938
AGATAATGATCTGACAACGCGT
57.953
40.909
5.58
5.58
41.12
6.01
953
1134
4.045104
AGATAATGATCTGACAACGCGTC
58.955
43.478
14.44
0.00
41.12
5.19
960
1141
4.834828
GACAACGCGTCGAGTAGT
57.165
55.556
14.44
4.57
34.19
2.73
961
1142
3.083213
GACAACGCGTCGAGTAGTT
57.917
52.632
14.44
0.00
34.19
2.24
962
1143
1.402511
GACAACGCGTCGAGTAGTTT
58.597
50.000
14.44
0.00
34.19
2.66
963
1144
1.381429
GACAACGCGTCGAGTAGTTTC
59.619
52.381
14.44
0.00
34.19
2.78
964
1145
1.002033
ACAACGCGTCGAGTAGTTTCT
60.002
47.619
14.44
0.00
0.00
2.52
965
1146
2.049228
CAACGCGTCGAGTAGTTTCTT
58.951
47.619
14.44
0.00
0.00
2.52
966
1147
2.412421
ACGCGTCGAGTAGTTTCTTT
57.588
45.000
5.58
0.00
0.00
2.52
967
1148
2.735823
ACGCGTCGAGTAGTTTCTTTT
58.264
42.857
5.58
0.00
0.00
2.27
968
1149
3.118542
ACGCGTCGAGTAGTTTCTTTTT
58.881
40.909
5.58
0.00
0.00
1.94
1031
1214
7.618019
TTGAGATAGGTAAGCATGTTATCCT
57.382
36.000
9.58
9.58
0.00
3.24
1032
1215
8.721133
TTGAGATAGGTAAGCATGTTATCCTA
57.279
34.615
12.47
12.47
33.10
2.94
1058
1241
4.781621
TGGCTGATGATTCTAGGCATATCT
59.218
41.667
0.00
0.00
41.33
1.98
1059
1242
5.105023
TGGCTGATGATTCTAGGCATATCTC
60.105
44.000
0.00
0.00
41.33
2.75
1060
1243
5.129155
GGCTGATGATTCTAGGCATATCTCT
59.871
44.000
0.00
0.00
37.02
3.10
1061
1244
6.275335
GCTGATGATTCTAGGCATATCTCTC
58.725
44.000
0.00
0.00
0.00
3.20
1279
1462
8.664992
TGGCTGATCAAAAGGTACCAATATATA
58.335
33.333
15.94
0.00
0.00
0.86
1312
1503
3.160269
AGAAAGCATTTTCCACAGAGGG
58.840
45.455
0.00
0.00
42.99
4.30
1319
1510
6.672593
AGCATTTTCCACAGAGGGAATTATA
58.327
36.000
0.00
0.00
45.90
0.98
1322
1513
8.424133
GCATTTTCCACAGAGGGAATTATATTT
58.576
33.333
0.00
0.00
45.90
1.40
1363
1554
7.696992
TTTGATTTGGGTAGCCTTAGTTTAG
57.303
36.000
13.11
0.00
0.00
1.85
1365
1556
6.177610
TGATTTGGGTAGCCTTAGTTTAGTG
58.822
40.000
13.11
0.00
0.00
2.74
1369
1560
6.382919
TGGGTAGCCTTAGTTTAGTGATTT
57.617
37.500
13.11
0.00
0.00
2.17
1370
1561
6.786122
TGGGTAGCCTTAGTTTAGTGATTTT
58.214
36.000
13.11
0.00
0.00
1.82
1371
1562
7.920227
TGGGTAGCCTTAGTTTAGTGATTTTA
58.080
34.615
13.11
0.00
0.00
1.52
1372
1563
7.825761
TGGGTAGCCTTAGTTTAGTGATTTTAC
59.174
37.037
13.11
0.00
0.00
2.01
1413
1604
4.592778
ACACCATTCAGCTTAACCCATTTT
59.407
37.500
0.00
0.00
0.00
1.82
1505
1696
5.218139
GCATTGAGAAAAGGTTCTGTTCTG
58.782
41.667
5.19
0.00
44.42
3.02
1511
1702
5.238583
AGAAAAGGTTCTGTTCTGGTATCG
58.761
41.667
0.00
0.00
42.73
2.92
1676
1867
6.183360
CCAACTGCTTCTTTTGTAGAAAGTGA
60.183
38.462
0.00
0.00
42.19
3.41
1743
1934
6.226052
TCATAAGGTCATCATTCTCCAATCG
58.774
40.000
0.00
0.00
0.00
3.34
1837
2028
2.558359
CCTGTGGTTCATTTCCTTCACC
59.442
50.000
0.00
0.00
0.00
4.02
1998
2190
5.047847
CCTAGACTCGTGTTCTCTCTAGAG
58.952
50.000
13.98
13.98
43.36
2.43
2062
2260
8.527810
GGATGGTGATTTGTAATTCTAACCAAA
58.472
33.333
0.00
0.00
39.71
3.28
2065
2263
8.573035
TGGTGATTTGTAATTCTAACCAAACTC
58.427
33.333
0.00
0.00
33.67
3.01
2096
2294
2.069273
GTCGTTTGTCCATGACTCCTG
58.931
52.381
0.00
0.00
33.15
3.86
2129
2327
3.240631
GCGTTTTTCAAACTTGCTGACTC
59.759
43.478
0.00
0.00
0.00
3.36
2133
2331
4.621068
TTTCAAACTTGCTGACTCTGTG
57.379
40.909
0.00
0.00
0.00
3.66
2151
2349
2.546368
TGTGACATTCCGTTTCCTTTCG
59.454
45.455
0.00
0.00
0.00
3.46
2732
2933
0.536233
TGCTCGCTCTAGCCTCTAGG
60.536
60.000
0.00
0.00
42.05
3.02
2733
2934
0.250553
GCTCGCTCTAGCCTCTAGGA
60.251
60.000
0.00
0.00
36.45
2.94
2735
2936
2.083774
CTCGCTCTAGCCTCTAGGATG
58.916
57.143
0.00
0.00
37.91
3.51
3024
3246
1.831106
TGGTGTGTGCTAGGGACTATG
59.169
52.381
0.00
0.00
41.70
2.23
3077
3299
4.143179
GGTTCGTGTCGAAGGTTATTCTTG
60.143
45.833
4.84
0.00
46.54
3.02
3123
3345
4.201990
GGATCTGAGATGGTTTTCATGTGC
60.202
45.833
0.00
0.00
35.97
4.57
3146
3368
1.159285
CTGGAGCGTGCATTTTCTGA
58.841
50.000
0.00
0.00
0.00
3.27
3207
3429
4.100189
CCGGATTGAAAGTAGATGTCTCCT
59.900
45.833
0.00
0.00
0.00
3.69
3208
3430
5.302059
CCGGATTGAAAGTAGATGTCTCCTA
59.698
44.000
0.00
0.00
0.00
2.94
3209
3431
6.210078
CGGATTGAAAGTAGATGTCTCCTAC
58.790
44.000
0.00
0.00
37.38
3.18
3210
3432
6.517605
GGATTGAAAGTAGATGTCTCCTACC
58.482
44.000
0.00
0.00
37.74
3.18
3211
3433
6.098409
GGATTGAAAGTAGATGTCTCCTACCA
59.902
42.308
0.00
0.00
37.74
3.25
3212
3434
7.202047
GGATTGAAAGTAGATGTCTCCTACCAT
60.202
40.741
0.00
0.00
37.74
3.55
3213
3435
6.471233
TGAAAGTAGATGTCTCCTACCATG
57.529
41.667
0.00
0.00
37.74
3.66
3214
3436
4.946478
AAGTAGATGTCTCCTACCATGC
57.054
45.455
0.00
0.00
37.74
4.06
3215
3437
3.235200
AGTAGATGTCTCCTACCATGCC
58.765
50.000
0.00
0.00
37.74
4.40
3216
3438
1.428869
AGATGTCTCCTACCATGCCC
58.571
55.000
0.00
0.00
0.00
5.36
3217
3439
1.061812
AGATGTCTCCTACCATGCCCT
60.062
52.381
0.00
0.00
0.00
5.19
3218
3440
1.771255
GATGTCTCCTACCATGCCCTT
59.229
52.381
0.00
0.00
0.00
3.95
3219
3441
2.561209
TGTCTCCTACCATGCCCTTA
57.439
50.000
0.00
0.00
0.00
2.69
3220
3442
2.116238
TGTCTCCTACCATGCCCTTAC
58.884
52.381
0.00
0.00
0.00
2.34
3221
3443
2.116238
GTCTCCTACCATGCCCTTACA
58.884
52.381
0.00
0.00
0.00
2.41
3222
3444
2.504175
GTCTCCTACCATGCCCTTACAA
59.496
50.000
0.00
0.00
0.00
2.41
3223
3445
3.054655
GTCTCCTACCATGCCCTTACAAA
60.055
47.826
0.00
0.00
0.00
2.83
3224
3446
3.054655
TCTCCTACCATGCCCTTACAAAC
60.055
47.826
0.00
0.00
0.00
2.93
3225
3447
2.916934
TCCTACCATGCCCTTACAAACT
59.083
45.455
0.00
0.00
0.00
2.66
3226
3448
4.105577
TCCTACCATGCCCTTACAAACTA
58.894
43.478
0.00
0.00
0.00
2.24
3227
3449
4.080751
TCCTACCATGCCCTTACAAACTAC
60.081
45.833
0.00
0.00
0.00
2.73
3228
3450
4.080526
CCTACCATGCCCTTACAAACTACT
60.081
45.833
0.00
0.00
0.00
2.57
3229
3451
3.951663
ACCATGCCCTTACAAACTACTC
58.048
45.455
0.00
0.00
0.00
2.59
3230
3452
3.279434
CCATGCCCTTACAAACTACTCC
58.721
50.000
0.00
0.00
0.00
3.85
3231
3453
3.054361
CCATGCCCTTACAAACTACTCCT
60.054
47.826
0.00
0.00
0.00
3.69
3232
3454
4.567747
CCATGCCCTTACAAACTACTCCTT
60.568
45.833
0.00
0.00
0.00
3.36
3233
3455
4.281898
TGCCCTTACAAACTACTCCTTC
57.718
45.455
0.00
0.00
0.00
3.46
3234
3456
3.008704
TGCCCTTACAAACTACTCCTTCC
59.991
47.826
0.00
0.00
0.00
3.46
3235
3457
3.858247
CCCTTACAAACTACTCCTTCCG
58.142
50.000
0.00
0.00
0.00
4.30
3236
3458
3.260128
CCCTTACAAACTACTCCTTCCGT
59.740
47.826
0.00
0.00
0.00
4.69
3237
3459
4.492611
CCTTACAAACTACTCCTTCCGTC
58.507
47.826
0.00
0.00
0.00
4.79
3238
3460
2.719426
ACAAACTACTCCTTCCGTCG
57.281
50.000
0.00
0.00
0.00
5.12
3239
3461
1.336609
ACAAACTACTCCTTCCGTCGC
60.337
52.381
0.00
0.00
0.00
5.19
3245
3467
2.225068
ACTCCTTCCGTCGCATAATG
57.775
50.000
0.00
0.00
0.00
1.90
3250
3472
3.131577
TCCTTCCGTCGCATAATGTAAGT
59.868
43.478
0.00
0.00
0.00
2.24
3283
3505
3.119209
CCTTACAAACTACTCCCTCCGTC
60.119
52.174
0.00
0.00
0.00
4.79
3309
3531
9.805966
CGCATAATATAAGAGCGTTTTTGATAA
57.194
29.630
0.00
0.00
43.08
1.75
3315
3537
3.610911
AGAGCGTTTTTGATAAGGAGGG
58.389
45.455
0.00
0.00
0.00
4.30
3318
3540
4.259356
AGCGTTTTTGATAAGGAGGGTAC
58.741
43.478
0.00
0.00
0.00
3.34
3338
3560
5.050091
GGTACCAAAGTCATCATATTCGCAG
60.050
44.000
7.15
0.00
0.00
5.18
3344
3566
2.992543
GTCATCATATTCGCAGCCTCTC
59.007
50.000
0.00
0.00
0.00
3.20
3348
3570
2.074576
CATATTCGCAGCCTCTCCATG
58.925
52.381
0.00
0.00
0.00
3.66
3371
3593
3.681909
TTTTTAAGGCTGGGGCGAT
57.318
47.368
0.00
0.00
39.81
4.58
3398
3620
4.320202
GCAAACACAAGGTCGACATAATGT
60.320
41.667
18.91
14.96
0.00
2.71
3413
3635
8.869897
TCGACATAATGTGTTCTTCATAACTTC
58.130
33.333
0.00
0.00
42.36
3.01
3579
4001
2.435059
GTTGTCCGGGAGCAGAGC
60.435
66.667
0.00
0.00
0.00
4.09
3650
4095
1.353103
CGCATCCAGGAATGTTCGC
59.647
57.895
0.00
0.00
0.00
4.70
3677
4122
5.643777
CGCCAAGATTTAGGTGGATATAAGG
59.356
44.000
0.00
0.00
34.05
2.69
3678
4123
6.520061
CGCCAAGATTTAGGTGGATATAAGGA
60.520
42.308
0.00
0.00
34.05
3.36
3679
4124
7.231467
GCCAAGATTTAGGTGGATATAAGGAA
58.769
38.462
0.00
0.00
34.05
3.36
3680
4125
7.724061
GCCAAGATTTAGGTGGATATAAGGAAA
59.276
37.037
0.00
0.00
34.05
3.13
3681
4126
9.289782
CCAAGATTTAGGTGGATATAAGGAAAG
57.710
37.037
0.00
0.00
34.05
2.62
3732
4177
2.405191
GCTTGCGGGCTCGATTTC
59.595
61.111
12.03
0.00
39.00
2.17
3747
4192
5.873179
TCGATTTCGAGTTGCCTAAAAAT
57.127
34.783
0.00
0.00
44.22
1.82
3748
4193
6.971527
TCGATTTCGAGTTGCCTAAAAATA
57.028
33.333
0.00
0.00
44.22
1.40
3749
4194
7.548196
TCGATTTCGAGTTGCCTAAAAATAT
57.452
32.000
0.00
0.00
44.22
1.28
3750
4195
7.406553
TCGATTTCGAGTTGCCTAAAAATATG
58.593
34.615
0.00
0.00
44.22
1.78
3752
4197
4.893424
TCGAGTTGCCTAAAAATATGGC
57.107
40.909
0.00
0.00
46.26
4.40
3759
4204
4.425577
GCCTAAAAATATGGCGATGGAG
57.574
45.455
0.00
0.00
37.11
3.86
3760
4205
3.366374
GCCTAAAAATATGGCGATGGAGC
60.366
47.826
0.00
0.00
37.11
4.70
3761
4206
3.120199
CCTAAAAATATGGCGATGGAGCG
60.120
47.826
0.00
0.00
38.18
5.03
3769
4214
4.348857
CGATGGAGCGCATGATGA
57.651
55.556
11.47
0.00
0.00
2.92
3770
4215
2.836944
CGATGGAGCGCATGATGAT
58.163
52.632
11.47
0.00
0.00
2.45
3771
4216
1.154197
CGATGGAGCGCATGATGATT
58.846
50.000
11.47
0.00
0.00
2.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.840005
GGGGGAAAGCCTCGCGAG
62.840
72.222
29.06
29.06
37.88
5.03
3
4
3.978571
GACAGGGGGAAAGCCTCGC
62.979
68.421
0.00
0.00
34.47
5.03
4
5
0.976073
TAGACAGGGGGAAAGCCTCG
60.976
60.000
0.00
0.00
34.47
4.63
5
6
0.833949
CTAGACAGGGGGAAAGCCTC
59.166
60.000
0.00
0.00
0.00
4.70
6
7
1.275421
GCTAGACAGGGGGAAAGCCT
61.275
60.000
0.00
0.00
0.00
4.58
7
8
1.224870
GCTAGACAGGGGGAAAGCC
59.775
63.158
0.00
0.00
0.00
4.35
8
9
1.224870
GGCTAGACAGGGGGAAAGC
59.775
63.158
0.00
0.00
0.00
3.51
9
10
1.636769
GGGGCTAGACAGGGGGAAAG
61.637
65.000
0.00
0.00
0.00
2.62
10
11
1.618447
GGGGCTAGACAGGGGGAAA
60.618
63.158
0.00
0.00
0.00
3.13
11
12
2.042261
GGGGCTAGACAGGGGGAA
59.958
66.667
0.00
0.00
0.00
3.97
12
13
4.475444
CGGGGCTAGACAGGGGGA
62.475
72.222
0.00
0.00
0.00
4.81
13
14
4.798682
ACGGGGCTAGACAGGGGG
62.799
72.222
0.00
0.00
0.00
5.40
14
15
0.979187
TAAACGGGGCTAGACAGGGG
60.979
60.000
0.00
0.00
0.00
4.79
15
16
0.464452
CTAAACGGGGCTAGACAGGG
59.536
60.000
0.00
0.00
0.00
4.45
16
17
0.179081
GCTAAACGGGGCTAGACAGG
60.179
60.000
0.00
0.00
0.00
4.00
17
18
0.527817
CGCTAAACGGGGCTAGACAG
60.528
60.000
0.00
0.00
38.44
3.51
18
19
1.514087
CGCTAAACGGGGCTAGACA
59.486
57.895
0.00
0.00
38.44
3.41
19
20
1.881709
GCGCTAAACGGGGCTAGAC
60.882
63.158
0.00
0.00
43.93
2.59
20
21
2.292794
CTGCGCTAAACGGGGCTAGA
62.293
60.000
9.73
0.00
43.97
2.43
21
22
1.883084
CTGCGCTAAACGGGGCTAG
60.883
63.158
9.73
0.00
43.97
3.42
22
23
2.185867
CTGCGCTAAACGGGGCTA
59.814
61.111
9.73
0.00
43.97
3.93
23
24
4.778143
CCTGCGCTAAACGGGGCT
62.778
66.667
9.73
0.00
43.97
5.19
127
128
2.904866
CGGAGAGGAGAGGCGAGG
60.905
72.222
0.00
0.00
0.00
4.63
128
129
2.124487
ACGGAGAGGAGAGGCGAG
60.124
66.667
0.00
0.00
0.00
5.03
129
130
2.124653
GACGGAGAGGAGAGGCGA
60.125
66.667
0.00
0.00
0.00
5.54
130
131
2.124487
AGACGGAGAGGAGAGGCG
60.124
66.667
0.00
0.00
0.00
5.52
131
132
0.395173
AAGAGACGGAGAGGAGAGGC
60.395
60.000
0.00
0.00
0.00
4.70
285
295
2.202756
GACGCACCTGTCCGATCC
60.203
66.667
0.00
0.00
32.61
3.36
312
322
2.871427
GCTGTTAGATTCGCCCGCG
61.871
63.158
0.00
0.00
41.35
6.46
392
551
2.237643
AGTCACCACTACCACAAACACA
59.762
45.455
0.00
0.00
0.00
3.72
402
561
6.674760
GCGGAATAATTTTCAGTCACCACTAC
60.675
42.308
0.00
0.00
0.00
2.73
404
563
4.156008
GCGGAATAATTTTCAGTCACCACT
59.844
41.667
0.00
0.00
0.00
4.00
449
608
1.734465
CAGCAATTCCACGAGTTCTCC
59.266
52.381
0.00
0.00
0.00
3.71
450
609
2.688507
TCAGCAATTCCACGAGTTCTC
58.311
47.619
0.00
0.00
0.00
2.87
545
706
5.591099
CATGGTATAATTTCAGTTGGTGGC
58.409
41.667
0.00
0.00
0.00
5.01
563
724
8.739972
CCTTCTTTTTACTAGTAATTGCATGGT
58.260
33.333
15.92
0.00
0.00
3.55
620
784
9.872721
CCAAAAAGTAACCAAGGTAAGTTAAAA
57.127
29.630
0.00
0.00
30.64
1.52
621
785
9.033711
ACCAAAAAGTAACCAAGGTAAGTTAAA
57.966
29.630
0.00
0.00
30.64
1.52
622
786
8.592529
ACCAAAAAGTAACCAAGGTAAGTTAA
57.407
30.769
0.00
0.00
30.64
2.01
623
787
7.833183
TGACCAAAAAGTAACCAAGGTAAGTTA
59.167
33.333
0.00
0.00
0.00
2.24
624
788
6.664384
TGACCAAAAAGTAACCAAGGTAAGTT
59.336
34.615
0.00
0.00
0.00
2.66
625
789
6.189133
TGACCAAAAAGTAACCAAGGTAAGT
58.811
36.000
0.00
0.00
0.00
2.24
626
790
6.702716
TGACCAAAAAGTAACCAAGGTAAG
57.297
37.500
0.00
0.00
0.00
2.34
627
791
8.943594
ATATGACCAAAAAGTAACCAAGGTAA
57.056
30.769
0.00
0.00
0.00
2.85
628
792
8.943594
AATATGACCAAAAAGTAACCAAGGTA
57.056
30.769
0.00
0.00
0.00
3.08
629
793
7.849322
AATATGACCAAAAAGTAACCAAGGT
57.151
32.000
0.00
0.00
0.00
3.50
630
794
8.798402
TGTAATATGACCAAAAAGTAACCAAGG
58.202
33.333
0.00
0.00
0.00
3.61
668
832
8.421784
TCGTATCCTTTTCTCAGCTTATTGTAT
58.578
33.333
0.00
0.00
0.00
2.29
669
833
7.778083
TCGTATCCTTTTCTCAGCTTATTGTA
58.222
34.615
0.00
0.00
0.00
2.41
670
834
6.640518
TCGTATCCTTTTCTCAGCTTATTGT
58.359
36.000
0.00
0.00
0.00
2.71
671
835
7.539712
TTCGTATCCTTTTCTCAGCTTATTG
57.460
36.000
0.00
0.00
0.00
1.90
682
860
5.060940
GCATGCAAGTTTTCGTATCCTTTTC
59.939
40.000
14.21
0.00
0.00
2.29
693
871
6.810182
AGATGTTATTGAGCATGCAAGTTTTC
59.190
34.615
21.98
7.99
0.00
2.29
699
877
6.602803
TCCTTAAGATGTTATTGAGCATGCAA
59.397
34.615
21.98
6.70
0.00
4.08
763
941
4.685169
AACACACTGGCTATTTCAATCG
57.315
40.909
0.00
0.00
0.00
3.34
900
1081
6.316140
AGCATAAGATTTGCGTCTTAACATCA
59.684
34.615
9.24
0.00
44.82
3.07
948
1129
3.765505
AAAAAGAAACTACTCGACGCG
57.234
42.857
3.53
3.53
0.00
6.01
965
1146
3.058085
GCGTTCCACCCTTTATCGAAAAA
60.058
43.478
0.00
0.00
0.00
1.94
966
1147
2.485038
GCGTTCCACCCTTTATCGAAAA
59.515
45.455
0.00
0.00
0.00
2.29
967
1148
2.078392
GCGTTCCACCCTTTATCGAAA
58.922
47.619
0.00
0.00
0.00
3.46
968
1149
1.729284
GCGTTCCACCCTTTATCGAA
58.271
50.000
0.00
0.00
0.00
3.71
969
1150
0.458889
CGCGTTCCACCCTTTATCGA
60.459
55.000
0.00
0.00
0.00
3.59
970
1151
0.738412
ACGCGTTCCACCCTTTATCG
60.738
55.000
5.58
0.00
0.00
2.92
971
1152
1.004595
GACGCGTTCCACCCTTTATC
58.995
55.000
15.53
0.00
0.00
1.75
972
1153
0.738412
CGACGCGTTCCACCCTTTAT
60.738
55.000
15.53
0.00
0.00
1.40
973
1154
1.373246
CGACGCGTTCCACCCTTTA
60.373
57.895
15.53
0.00
0.00
1.85
974
1155
2.663852
CGACGCGTTCCACCCTTT
60.664
61.111
15.53
0.00
0.00
3.11
975
1156
3.569049
CTCGACGCGTTCCACCCTT
62.569
63.158
15.53
0.00
0.00
3.95
976
1157
4.052229
CTCGACGCGTTCCACCCT
62.052
66.667
15.53
0.00
0.00
4.34
977
1158
2.862347
CTACTCGACGCGTTCCACCC
62.862
65.000
15.53
0.00
0.00
4.61
978
1159
1.513586
CTACTCGACGCGTTCCACC
60.514
63.158
15.53
0.00
0.00
4.61
979
1160
1.063951
CACTACTCGACGCGTTCCAC
61.064
60.000
15.53
0.00
0.00
4.02
980
1161
1.208358
CACTACTCGACGCGTTCCA
59.792
57.895
15.53
0.00
0.00
3.53
981
1162
0.110056
TTCACTACTCGACGCGTTCC
60.110
55.000
15.53
0.00
0.00
3.62
982
1163
1.136141
TCTTCACTACTCGACGCGTTC
60.136
52.381
15.53
5.86
0.00
3.95
983
1164
0.870393
TCTTCACTACTCGACGCGTT
59.130
50.000
15.53
0.00
0.00
4.84
984
1165
1.085091
ATCTTCACTACTCGACGCGT
58.915
50.000
13.85
13.85
0.00
6.01
1031
1214
3.711190
TGCCTAGAATCATCAGCCAAGTA
59.289
43.478
0.00
0.00
0.00
2.24
1032
1215
2.507058
TGCCTAGAATCATCAGCCAAGT
59.493
45.455
0.00
0.00
0.00
3.16
1058
1241
1.481363
CAAGCCTGCATCAGAGAGAGA
59.519
52.381
0.00
0.00
32.44
3.10
1059
1242
1.942677
CAAGCCTGCATCAGAGAGAG
58.057
55.000
0.00
0.00
32.44
3.20
1279
1462
7.178983
TGGAAAATGCTTTCTCCAATGACTAAT
59.821
33.333
4.96
0.00
40.76
1.73
1285
1468
4.885413
TGTGGAAAATGCTTTCTCCAATG
58.115
39.130
8.85
0.00
40.76
2.82
1288
1471
3.822735
CTCTGTGGAAAATGCTTTCTCCA
59.177
43.478
3.33
3.33
40.76
3.86
1291
1474
3.160269
CCCTCTGTGGAAAATGCTTTCT
58.840
45.455
0.00
0.00
40.76
2.52
1294
1477
2.978156
TCCCTCTGTGGAAAATGCTT
57.022
45.000
0.00
0.00
38.35
3.91
1295
1478
2.978156
TTCCCTCTGTGGAAAATGCT
57.022
45.000
0.00
0.00
41.40
3.79
1296
1479
5.859205
ATAATTCCCTCTGTGGAAAATGC
57.141
39.130
0.00
0.00
46.99
3.56
1322
1513
8.420222
CCAAATCAAATTGTACCATGCCTAATA
58.580
33.333
0.00
0.00
0.00
0.98
1323
1514
7.274447
CCAAATCAAATTGTACCATGCCTAAT
58.726
34.615
0.00
0.00
0.00
1.73
1324
1515
6.351711
CCCAAATCAAATTGTACCATGCCTAA
60.352
38.462
0.00
0.00
0.00
2.69
1348
1539
9.445878
AAGTAAAATCACTAAACTAAGGCTACC
57.554
33.333
0.00
0.00
0.00
3.18
1369
1560
8.092068
TGGTGTCTTTGATCTCGAAATAAGTAA
58.908
33.333
0.00
0.00
0.00
2.24
1370
1561
7.608153
TGGTGTCTTTGATCTCGAAATAAGTA
58.392
34.615
0.00
0.00
0.00
2.24
1371
1562
6.464222
TGGTGTCTTTGATCTCGAAATAAGT
58.536
36.000
0.00
0.00
0.00
2.24
1372
1563
6.968131
TGGTGTCTTTGATCTCGAAATAAG
57.032
37.500
0.00
0.00
0.00
1.73
1380
1571
4.260170
AGCTGAATGGTGTCTTTGATCTC
58.740
43.478
0.00
0.00
0.00
2.75
1390
1581
2.969821
TGGGTTAAGCTGAATGGTGT
57.030
45.000
4.41
0.00
0.00
4.16
1505
1696
1.668419
ACATCAAGCCAAGCGATACC
58.332
50.000
0.00
0.00
0.00
2.73
1511
1702
2.035066
AGTGTCAAACATCAAGCCAAGC
59.965
45.455
0.00
0.00
0.00
4.01
1713
1904
6.876257
GGAGAATGATGACCTTATGATGTACC
59.124
42.308
0.00
0.00
0.00
3.34
1724
1915
2.437281
AGCGATTGGAGAATGATGACCT
59.563
45.455
0.00
0.00
0.00
3.85
1743
1934
7.878408
GTTTTGTAAAACATATCTCGCTAGC
57.122
36.000
4.06
4.06
45.72
3.42
1817
2008
2.226437
CGGTGAAGGAAATGAACCACAG
59.774
50.000
0.00
0.00
0.00
3.66
1944
2136
2.945008
CTGTAACCACCATGGCATAGTG
59.055
50.000
17.60
17.60
42.67
2.74
2029
2221
8.526147
AGAATTACAAATCACCATCCTTTTCAG
58.474
33.333
0.00
0.00
0.00
3.02
2062
2260
5.007385
ACAAACGACAGAACAAGTAGAGT
57.993
39.130
0.00
0.00
0.00
3.24
2065
2263
4.116961
TGGACAAACGACAGAACAAGTAG
58.883
43.478
0.00
0.00
0.00
2.57
2070
2268
2.869801
GTCATGGACAAACGACAGAACA
59.130
45.455
0.00
0.00
32.09
3.18
2096
2294
3.740044
TGAAAAACGCAGCAGCTATAC
57.260
42.857
0.00
0.00
39.10
1.47
2129
2327
3.363970
CGAAAGGAAACGGAATGTCACAG
60.364
47.826
0.00
0.00
0.00
3.66
2133
2331
1.135774
GGCGAAAGGAAACGGAATGTC
60.136
52.381
0.00
0.00
0.00
3.06
2151
2349
1.009389
CCTCGAACTCGTTGTCTGGC
61.009
60.000
0.00
0.00
40.80
4.85
2701
2899
1.080974
GCGAGCAAGCAAGCAACAT
60.081
52.632
3.19
0.00
36.85
2.71
2702
2900
2.121564
GAGCGAGCAAGCAAGCAACA
62.122
55.000
12.73
0.00
40.15
3.33
2703
2901
1.441682
GAGCGAGCAAGCAAGCAAC
60.442
57.895
12.73
4.62
40.15
4.17
2704
2902
0.320683
TAGAGCGAGCAAGCAAGCAA
60.321
50.000
12.73
0.00
40.15
3.91
2705
2903
0.738762
CTAGAGCGAGCAAGCAAGCA
60.739
55.000
12.73
0.00
40.15
3.91
2706
2904
2.005220
CTAGAGCGAGCAAGCAAGC
58.995
57.895
6.21
4.06
40.15
4.01
2707
2905
1.427592
GGCTAGAGCGAGCAAGCAAG
61.428
60.000
15.35
2.12
44.76
4.01
2717
2918
1.904287
ACATCCTAGAGGCTAGAGCG
58.096
55.000
0.00
0.00
43.26
5.03
2732
2933
1.264020
TCACACAAGCGAGCAAACATC
59.736
47.619
0.00
0.00
0.00
3.06
2733
2934
1.308047
TCACACAAGCGAGCAAACAT
58.692
45.000
0.00
0.00
0.00
2.71
2735
2936
2.046313
CAATCACACAAGCGAGCAAAC
58.954
47.619
0.00
0.00
0.00
2.93
2857
3071
0.546267
AGGTCAGAGCACCAGGACAT
60.546
55.000
1.66
0.00
39.16
3.06
2914
3128
3.310860
AACGGATCTCGCCACCCAC
62.311
63.158
3.85
0.00
43.89
4.61
3024
3246
1.278637
CCGCAAACAGACCGACAAC
59.721
57.895
0.00
0.00
0.00
3.32
3077
3299
2.766970
TAAACAGCAACGGCAAGAAC
57.233
45.000
0.00
0.00
44.61
3.01
3123
3345
0.877071
AAAATGCACGCTCCAGAGTG
59.123
50.000
6.67
6.67
46.42
3.51
3207
3429
4.080751
GGAGTAGTTTGTAAGGGCATGGTA
60.081
45.833
0.00
0.00
0.00
3.25
3208
3430
3.308188
GGAGTAGTTTGTAAGGGCATGGT
60.308
47.826
0.00
0.00
0.00
3.55
3209
3431
3.054361
AGGAGTAGTTTGTAAGGGCATGG
60.054
47.826
0.00
0.00
0.00
3.66
3210
3432
4.222124
AGGAGTAGTTTGTAAGGGCATG
57.778
45.455
0.00
0.00
0.00
4.06
3211
3433
4.324331
GGAAGGAGTAGTTTGTAAGGGCAT
60.324
45.833
0.00
0.00
0.00
4.40
3212
3434
3.008704
GGAAGGAGTAGTTTGTAAGGGCA
59.991
47.826
0.00
0.00
0.00
5.36
3213
3435
3.607741
GGAAGGAGTAGTTTGTAAGGGC
58.392
50.000
0.00
0.00
0.00
5.19
3214
3436
3.260128
ACGGAAGGAGTAGTTTGTAAGGG
59.740
47.826
0.00
0.00
0.00
3.95
3215
3437
4.492611
GACGGAAGGAGTAGTTTGTAAGG
58.507
47.826
0.00
0.00
0.00
2.69
3216
3438
4.164294
CGACGGAAGGAGTAGTTTGTAAG
58.836
47.826
0.00
0.00
0.00
2.34
3217
3439
3.612479
GCGACGGAAGGAGTAGTTTGTAA
60.612
47.826
0.00
0.00
0.00
2.41
3218
3440
2.095059
GCGACGGAAGGAGTAGTTTGTA
60.095
50.000
0.00
0.00
0.00
2.41
3219
3441
1.336609
GCGACGGAAGGAGTAGTTTGT
60.337
52.381
0.00
0.00
0.00
2.83
3220
3442
1.336517
TGCGACGGAAGGAGTAGTTTG
60.337
52.381
0.00
0.00
0.00
2.93
3221
3443
0.963962
TGCGACGGAAGGAGTAGTTT
59.036
50.000
0.00
0.00
0.00
2.66
3222
3444
1.183549
ATGCGACGGAAGGAGTAGTT
58.816
50.000
0.00
0.00
0.00
2.24
3223
3445
2.048444
TATGCGACGGAAGGAGTAGT
57.952
50.000
0.00
0.00
0.00
2.73
3224
3446
3.243434
ACATTATGCGACGGAAGGAGTAG
60.243
47.826
0.00
0.00
0.00
2.57
3225
3447
2.691526
ACATTATGCGACGGAAGGAGTA
59.308
45.455
0.00
0.00
0.00
2.59
3226
3448
1.480954
ACATTATGCGACGGAAGGAGT
59.519
47.619
0.00
0.00
0.00
3.85
3227
3449
2.225068
ACATTATGCGACGGAAGGAG
57.775
50.000
0.00
0.00
0.00
3.69
3228
3450
3.131577
ACTTACATTATGCGACGGAAGGA
59.868
43.478
0.00
0.00
0.00
3.36
3229
3451
3.245284
CACTTACATTATGCGACGGAAGG
59.755
47.826
0.00
0.00
0.00
3.46
3230
3452
3.302480
GCACTTACATTATGCGACGGAAG
60.302
47.826
0.00
0.00
0.00
3.46
3231
3453
2.605818
GCACTTACATTATGCGACGGAA
59.394
45.455
0.00
0.00
0.00
4.30
3232
3454
2.198406
GCACTTACATTATGCGACGGA
58.802
47.619
0.00
0.00
0.00
4.69
3233
3455
2.645628
GCACTTACATTATGCGACGG
57.354
50.000
0.00
0.00
0.00
4.79
3238
3460
3.849645
GCATGGTCGCACTTACATTATGC
60.850
47.826
0.00
0.00
35.96
3.14
3239
3461
3.303990
GGCATGGTCGCACTTACATTATG
60.304
47.826
0.00
0.00
0.00
1.90
3245
3467
1.078426
AGGGCATGGTCGCACTTAC
60.078
57.895
0.00
0.00
45.69
2.34
3250
3472
0.250945
TTTGTAAGGGCATGGTCGCA
60.251
50.000
0.00
0.00
0.00
5.10
3253
3475
3.939592
GAGTAGTTTGTAAGGGCATGGTC
59.060
47.826
0.00
0.00
0.00
4.02
3307
3529
4.431378
TGATGACTTTGGTACCCTCCTTA
58.569
43.478
10.07
0.00
0.00
2.69
3309
3531
2.915869
TGATGACTTTGGTACCCTCCT
58.084
47.619
10.07
0.00
0.00
3.69
3310
3532
3.933861
ATGATGACTTTGGTACCCTCC
57.066
47.619
10.07
0.00
0.00
4.30
3315
3537
5.559035
GCTGCGAATATGATGACTTTGGTAC
60.559
44.000
0.00
0.00
0.00
3.34
3318
3540
3.304257
GGCTGCGAATATGATGACTTTGG
60.304
47.826
0.00
0.00
0.00
3.28
3355
3577
1.319614
GCAATCGCCCCAGCCTTAAA
61.320
55.000
0.00
0.00
34.57
1.52
3356
3578
1.752694
GCAATCGCCCCAGCCTTAA
60.753
57.895
0.00
0.00
34.57
1.85
3357
3579
2.124320
GCAATCGCCCCAGCCTTA
60.124
61.111
0.00
0.00
34.57
2.69
3368
3590
0.317770
ACCTTGTGTTTGCGCAATCG
60.318
50.000
25.64
12.02
43.20
3.34
3369
3591
1.408422
GACCTTGTGTTTGCGCAATC
58.592
50.000
25.64
23.28
43.20
2.67
3370
3592
0.317770
CGACCTTGTGTTTGCGCAAT
60.318
50.000
25.64
5.90
43.20
3.56
3371
3593
1.063327
CGACCTTGTGTTTGCGCAA
59.937
52.632
21.02
21.02
42.14
4.85
3382
3604
5.408299
TGAAGAACACATTATGTCGACCTTG
59.592
40.000
14.12
7.75
42.31
3.61
3384
3606
5.147330
TGAAGAACACATTATGTCGACCT
57.853
39.130
14.12
5.73
42.31
3.85
3398
3620
8.433421
ACGAAAAAGAGAAGTTATGAAGAACA
57.567
30.769
0.00
0.00
0.00
3.18
3449
3671
6.573664
TTGTGGGACTGTTTGATCTAAATG
57.426
37.500
0.00
0.00
0.00
2.32
3492
3714
8.189119
TGGCTCAACCATTCTTTATTTTAGTT
57.811
30.769
0.00
0.00
46.36
2.24
3558
3980
4.308458
TGCTCCCGGACAACCACG
62.308
66.667
0.73
0.00
35.59
4.94
3600
4022
3.443045
GTGGCCCACATCCTTGCG
61.443
66.667
9.55
0.00
34.08
4.85
3601
4023
1.907807
TTGTGGCCCACATCCTTGC
60.908
57.895
19.05
0.00
44.16
4.01
3602
4024
1.865788
CGTTGTGGCCCACATCCTTG
61.866
60.000
19.05
2.22
44.16
3.61
3604
4026
2.034066
CGTTGTGGCCCACATCCT
59.966
61.111
19.05
0.00
44.16
3.24
3605
4027
3.061848
CCGTTGTGGCCCACATCC
61.062
66.667
19.05
10.57
44.16
3.51
3650
4095
1.714899
CCACCTAAATCTTGGCGCCG
61.715
60.000
23.90
8.74
0.00
6.46
3681
4126
1.300931
TTGAGCGAGGCGATATGGC
60.301
57.895
0.27
0.27
45.27
4.40
3752
4197
1.154197
AATCATCATGCGCTCCATCG
58.846
50.000
9.73
0.00
29.71
3.84
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.