Multiple sequence alignment - TraesCS2D01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G145900 chr2D 100.000 5432 0 0 1 5432 87743968 87738537 0.000000e+00 10032.0
1 TraesCS2D01G145900 chr2D 90.385 104 4 1 1679 1776 87742188 87742085 1.230000e-26 132.0
2 TraesCS2D01G145900 chr2D 90.385 104 4 1 1781 1884 87742290 87742193 1.230000e-26 132.0
3 TraesCS2D01G145900 chr2A 92.709 2647 127 27 1725 4370 87884878 87882297 0.000000e+00 3759.0
4 TraesCS2D01G145900 chr2A 95.749 541 19 3 4893 5432 87882092 87881555 0.000000e+00 869.0
5 TraesCS2D01G145900 chr2A 82.155 919 65 39 944 1820 87885596 87884735 0.000000e+00 697.0
6 TraesCS2D01G145900 chr2A 86.257 342 22 11 374 707 87886289 87885965 1.120000e-91 348.0
7 TraesCS2D01G145900 chr2A 90.667 150 9 4 156 304 87886684 87886539 1.540000e-45 195.0
8 TraesCS2D01G145900 chr2A 89.908 109 8 2 4405 4510 87882324 87882216 2.640000e-28 137.0
9 TraesCS2D01G145900 chr2A 94.000 50 3 0 4565 4614 87882195 87882146 5.830000e-10 76.8
10 TraesCS2D01G145900 chr2B 93.420 2295 120 18 1730 4003 140777395 140775111 0.000000e+00 3373.0
11 TraesCS2D01G145900 chr2B 95.254 611 22 4 4825 5432 140773299 140772693 0.000000e+00 961.0
12 TraesCS2D01G145900 chr2B 86.970 637 37 12 1211 1820 140777871 140777254 0.000000e+00 675.0
13 TraesCS2D01G145900 chr2B 94.087 389 17 4 3985 4370 140775078 140774693 2.180000e-163 586.0
14 TraesCS2D01G145900 chr2B 91.451 386 16 9 32 410 140779191 140778816 1.040000e-141 514.0
15 TraesCS2D01G145900 chr2B 83.665 502 42 20 750 1223 140778427 140777938 2.320000e-118 436.0
16 TraesCS2D01G145900 chr2B 88.208 212 12 11 4405 4614 140774720 140774520 1.960000e-59 241.0
17 TraesCS2D01G145900 chr2B 88.068 176 7 5 449 622 140778818 140778655 4.290000e-46 196.0
18 TraesCS2D01G145900 chr2B 85.135 148 15 4 485 627 655810931 655811076 1.580000e-30 145.0
19 TraesCS2D01G145900 chr2B 87.850 107 7 3 1676 1776 140777351 140777245 2.660000e-23 121.0
20 TraesCS2D01G145900 chr2B 89.247 93 4 1 1783 1875 140777395 140777309 1.600000e-20 111.0
21 TraesCS2D01G145900 chr4A 86.755 151 12 5 485 630 713057532 713057679 1.570000e-35 161.0
22 TraesCS2D01G145900 chr6B 84.106 151 17 4 485 630 632224085 632223937 7.340000e-29 139.0
23 TraesCS2D01G145900 chr6B 84.270 89 13 1 2943 3031 173830042 173829955 9.690000e-13 86.1
24 TraesCS2D01G145900 chr5A 79.605 152 18 3 4670 4820 682608218 682608357 4.480000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G145900 chr2D 87738537 87743968 5431 True 3432.000000 10032 93.590000 1 5432 3 chr2D.!!$R1 5431
1 TraesCS2D01G145900 chr2A 87881555 87886684 5129 True 868.828571 3759 90.206429 156 5432 7 chr2A.!!$R1 5276
2 TraesCS2D01G145900 chr2B 140772693 140779191 6498 True 721.400000 3373 89.822000 32 5432 10 chr2B.!!$R1 5400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.036858 GGCTGCTAGTAGCTATGGCC 60.037 60.0 28.53 22.48 42.97 5.36 F
836 1162 0.267960 TCCTACTCCATTCCCTCCCC 59.732 60.0 0.00 0.00 0.00 4.81 F
988 1388 0.391597 TCCTTTTTCGCGTGGTCTCT 59.608 50.0 5.77 0.00 0.00 3.10 F
2030 2567 0.183014 AGGATGGAGAGCAAGCATGG 59.817 55.0 0.00 0.00 0.00 3.66 F
2106 2643 0.835941 CAAGTGAGGAGCTGCCCTAT 59.164 55.0 0.00 0.00 36.49 2.57 F
3674 4232 1.024271 GCTTGGACAGCTTCAACACA 58.976 50.0 0.00 0.00 46.27 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1790 0.041833 AGAACCCTAGGCTGAGCTGA 59.958 55.0 3.72 0.0 0.00 4.26 R
2030 2567 0.038166 TTGTGCACCATTCTCCTCCC 59.962 55.0 15.69 0.0 0.00 4.30 R
2274 2811 0.865769 ACACGATCACAAAGAACCGC 59.134 50.0 0.00 0.0 0.00 5.68 R
3790 4348 0.312416 ACACACAGAGACAGAGACGC 59.688 55.0 0.00 0.0 0.00 5.19 R
3930 4488 0.888619 CTGTCCCGTTGAGTCTGCTA 59.111 55.0 0.00 0.0 0.00 3.49 R
4818 5485 0.035739 GGACCCTGTTTAACTGGCGA 59.964 55.0 14.42 0.0 36.06 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.160679 AGTTTGGATTTGGCTGCTAGT 57.839 42.857 0.00 0.00 0.00 2.57
21 22 4.301072 AGTTTGGATTTGGCTGCTAGTA 57.699 40.909 0.00 0.00 0.00 1.82
22 23 4.265073 AGTTTGGATTTGGCTGCTAGTAG 58.735 43.478 3.05 3.05 0.00 2.57
23 24 2.332063 TGGATTTGGCTGCTAGTAGC 57.668 50.000 23.17 23.17 42.82 3.58
24 25 1.839994 TGGATTTGGCTGCTAGTAGCT 59.160 47.619 28.53 11.97 42.97 3.32
25 26 3.038280 TGGATTTGGCTGCTAGTAGCTA 58.962 45.455 28.53 22.24 42.97 3.32
26 27 3.648067 TGGATTTGGCTGCTAGTAGCTAT 59.352 43.478 28.53 19.75 42.97 2.97
27 28 3.999663 GGATTTGGCTGCTAGTAGCTATG 59.000 47.826 28.53 13.33 42.97 2.23
28 29 3.475566 TTTGGCTGCTAGTAGCTATGG 57.524 47.619 28.53 11.08 42.97 2.74
29 30 0.681733 TGGCTGCTAGTAGCTATGGC 59.318 55.000 28.53 21.45 42.97 4.40
30 31 0.036858 GGCTGCTAGTAGCTATGGCC 60.037 60.000 28.53 22.48 42.97 5.36
31 32 0.972883 GCTGCTAGTAGCTATGGCCT 59.027 55.000 23.83 0.00 42.97 5.19
32 33 2.171840 GCTGCTAGTAGCTATGGCCTA 58.828 52.381 23.83 0.00 42.97 3.93
33 34 2.763448 GCTGCTAGTAGCTATGGCCTAT 59.237 50.000 23.83 0.00 42.97 2.57
34 35 3.430098 GCTGCTAGTAGCTATGGCCTATG 60.430 52.174 23.83 0.00 42.97 2.23
35 36 3.099905 TGCTAGTAGCTATGGCCTATGG 58.900 50.000 22.34 0.00 42.97 2.74
36 37 2.432510 GCTAGTAGCTATGGCCTATGGG 59.567 54.545 15.16 0.00 38.45 4.00
67 69 2.262915 GGCTGGACTCAGACGTGG 59.737 66.667 0.00 0.00 43.49 4.94
74 76 0.455295 GACTCAGACGTGGAGCTTCG 60.455 60.000 12.46 0.00 35.79 3.79
84 86 4.742201 GAGCTTCGAGGCGTGGCA 62.742 66.667 14.34 0.00 37.29 4.92
87 89 2.507992 CTTCGAGGCGTGGCAGAG 60.508 66.667 0.00 0.00 0.00 3.35
126 128 0.658897 TCGTTTGCGTGGTTTTCTCC 59.341 50.000 0.00 0.00 39.49 3.71
200 202 4.740695 CGCCAAATCCTTTTCGTGTAAAAA 59.259 37.500 0.00 0.00 36.64 1.94
301 308 4.097741 TCTTTGACAATTGGGTGAACACAG 59.902 41.667 10.83 3.40 0.00 3.66
381 568 4.156008 GGTGCGAGAAGTTTGGTAAATCAT 59.844 41.667 0.00 0.00 0.00 2.45
383 570 6.456988 GGTGCGAGAAGTTTGGTAAATCATAG 60.457 42.308 0.00 0.00 0.00 2.23
416 603 4.735132 GCTGGTGCGCGTGGACTA 62.735 66.667 20.19 13.62 36.55 2.59
420 607 2.257371 GTGCGCGTGGACTAGTCA 59.743 61.111 23.91 7.95 32.98 3.41
427 614 3.302968 GTGGACTAGTCACGTACGC 57.697 57.895 23.91 9.25 0.00 4.42
428 615 0.519999 GTGGACTAGTCACGTACGCG 60.520 60.000 23.91 3.53 44.93 6.01
429 616 1.061570 GGACTAGTCACGTACGCGG 59.938 63.158 23.91 8.28 43.45 6.46
430 617 1.639298 GGACTAGTCACGTACGCGGT 61.639 60.000 23.91 5.19 43.45 5.68
431 618 0.519999 GACTAGTCACGTACGCGGTG 60.520 60.000 18.20 9.57 43.45 4.94
476 666 6.715718 ACATTTGGAGAAGGATGATGATGATC 59.284 38.462 0.00 0.00 0.00 2.92
574 764 1.000274 GCCTGATGAAACCGCTTTGTT 60.000 47.619 0.00 0.00 0.00 2.83
577 769 3.057315 CCTGATGAAACCGCTTTGTTCAT 60.057 43.478 0.00 0.00 0.00 2.57
582 774 6.980978 TGATGAAACCGCTTTGTTCATAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
635 827 2.313317 CATCATCCATCCCCTTTGGTG 58.687 52.381 0.00 0.00 35.64 4.17
637 829 1.005805 TCATCCATCCCCTTTGGTGTG 59.994 52.381 0.00 0.00 35.64 3.82
640 832 1.219213 TCCATCCCCTTTGGTGTGTTT 59.781 47.619 0.00 0.00 35.64 2.83
642 834 2.437651 CCATCCCCTTTGGTGTGTTTTT 59.562 45.455 0.00 0.00 34.77 1.94
677 869 2.734755 TGATTGACATCACCCATCCC 57.265 50.000 0.00 0.00 34.22 3.85
696 891 3.010808 TCCCCTTGGTTTAATCGATGGTT 59.989 43.478 0.00 0.00 0.00 3.67
712 907 3.374042 TGGTTCACCAAGACCTCAAAA 57.626 42.857 0.00 0.00 44.35 2.44
741 1029 2.447244 AGATCGAATTCCTCCGCATC 57.553 50.000 0.00 0.00 0.00 3.91
747 1035 2.797156 CGAATTCCTCCGCATCAACTAG 59.203 50.000 0.00 0.00 0.00 2.57
755 1077 3.596214 TCCGCATCAACTAGTTTCTTCC 58.404 45.455 5.07 0.00 0.00 3.46
761 1083 5.352846 GCATCAACTAGTTTCTTCCTCTTCC 59.647 44.000 5.07 0.00 0.00 3.46
775 1101 2.524887 TTCCTCCCCGTCGTTGGT 60.525 61.111 0.00 0.00 0.00 3.67
807 1133 7.393234 CACACCCTTTCCAATAATCAAACTCTA 59.607 37.037 0.00 0.00 0.00 2.43
808 1134 8.116026 ACACCCTTTCCAATAATCAAACTCTAT 58.884 33.333 0.00 0.00 0.00 1.98
833 1159 1.413077 CCGTTCCTACTCCATTCCCTC 59.587 57.143 0.00 0.00 0.00 4.30
836 1162 0.267960 TCCTACTCCATTCCCTCCCC 59.732 60.000 0.00 0.00 0.00 4.81
837 1163 0.768609 CCTACTCCATTCCCTCCCCC 60.769 65.000 0.00 0.00 0.00 5.40
857 1183 6.259346 CCCCCATTCTTTCTTCTCTCTTAT 57.741 41.667 0.00 0.00 0.00 1.73
880 1206 1.658994 AAACAAACCGAGCTCGTTCA 58.341 45.000 32.41 0.00 37.74 3.18
905 1287 3.188873 CGTACTCCATTATCTCCCTCGTC 59.811 52.174 0.00 0.00 0.00 4.20
927 1309 3.248029 CTGACGCACCAGCTGTTC 58.752 61.111 13.81 0.00 39.10 3.18
928 1310 2.280797 TGACGCACCAGCTGTTCC 60.281 61.111 13.81 0.00 39.10 3.62
929 1311 2.031163 GACGCACCAGCTGTTCCT 59.969 61.111 13.81 0.00 39.10 3.36
931 1313 1.569479 GACGCACCAGCTGTTCCTTC 61.569 60.000 13.81 0.00 39.10 3.46
933 1315 1.598130 GCACCAGCTGTTCCTTCGT 60.598 57.895 13.81 0.00 37.91 3.85
935 1317 1.598130 ACCAGCTGTTCCTTCGTGC 60.598 57.895 13.81 0.00 0.00 5.34
988 1388 0.391597 TCCTTTTTCGCGTGGTCTCT 59.608 50.000 5.77 0.00 0.00 3.10
1060 1489 3.608759 TTCCTCCTCCGCCTCAGCT 62.609 63.158 0.00 0.00 36.60 4.24
1062 1491 4.527583 CTCCTCCGCCTCAGCTGC 62.528 72.222 9.47 0.00 36.60 5.25
1087 1516 1.104577 TTTGGGTTCTTCGCCGCTTT 61.105 50.000 0.00 0.00 0.00 3.51
1095 1524 3.529341 TTCGCCGCTTTGGAGCTCA 62.529 57.895 17.19 0.00 46.96 4.26
1123 1552 2.791927 GCGGGTTCCTGATTTCGC 59.208 61.111 1.37 0.00 36.51 4.70
1165 1594 3.107104 GATTCGCGCCGGCATTTCA 62.107 57.895 28.98 5.96 39.92 2.69
1205 1658 6.267492 TCTCTCTCTCTCTCTCTCTCTCTA 57.733 45.833 0.00 0.00 0.00 2.43
1213 1666 8.815565 TCTCTCTCTCTCTCTCTATCTCTATC 57.184 42.308 0.00 0.00 0.00 2.08
1220 1673 9.647918 TCTCTCTCTCTATCTCTATCTATCTCC 57.352 40.741 0.00 0.00 0.00 3.71
1224 1737 8.351414 TCTCTCTATCTCTATCTATCTCCTCCA 58.649 40.741 0.00 0.00 0.00 3.86
1261 1774 1.208165 ATCCTGCTCCGGGGTTTCTT 61.208 55.000 1.62 0.00 0.00 2.52
1267 1780 0.404426 CTCCGGGGTTTCTTTCCCTT 59.596 55.000 0.00 0.00 44.07 3.95
1270 1783 1.613520 CCGGGGTTTCTTTCCCTTCTC 60.614 57.143 0.00 0.00 44.07 2.87
1272 1785 1.272536 GGGGTTTCTTTCCCTTCTCCC 60.273 57.143 0.96 0.00 44.07 4.30
1348 1861 5.654497 CAGAGTCTTGGTGCTTTTCTTTTT 58.346 37.500 0.00 0.00 0.00 1.94
1382 1898 2.236395 AGTCTTGGTGCTGGTATGTACC 59.764 50.000 2.18 2.18 46.62 3.34
1387 1903 3.389866 TGGTGCTGGTATGTACCCTTAT 58.610 45.455 6.74 0.00 45.87 1.73
1393 1909 5.190925 TGCTGGTATGTACCCTTATGAGTTT 59.809 40.000 6.74 0.00 45.87 2.66
1485 2016 2.233676 AGGATGCGCGGTGATTCATATA 59.766 45.455 8.83 0.00 0.00 0.86
1491 2022 2.598637 CGCGGTGATTCATATACATCCG 59.401 50.000 0.00 5.52 39.71 4.18
1492 2023 3.585862 GCGGTGATTCATATACATCCGT 58.414 45.455 10.21 0.00 39.07 4.69
1503 2034 2.232298 TACATCCGTCGCACATGGCA 62.232 55.000 0.00 0.00 45.17 4.92
1735 2272 6.707161 CCATGGATTTGGTGCTATTTATTTGG 59.293 38.462 5.56 0.00 31.74 3.28
1758 2295 6.379988 TGGTCAGTATTAGCAACTGTATCTCA 59.620 38.462 3.40 0.00 43.88 3.27
1759 2296 6.697892 GGTCAGTATTAGCAACTGTATCTCAC 59.302 42.308 3.40 0.00 43.88 3.51
1760 2297 6.697892 GTCAGTATTAGCAACTGTATCTCACC 59.302 42.308 3.40 0.00 43.88 4.02
1761 2298 6.379988 TCAGTATTAGCAACTGTATCTCACCA 59.620 38.462 3.40 0.00 43.88 4.17
1762 2299 7.069950 TCAGTATTAGCAACTGTATCTCACCAT 59.930 37.037 3.40 0.00 43.88 3.55
1763 2300 7.170489 CAGTATTAGCAACTGTATCTCACCATG 59.830 40.741 0.00 0.00 39.61 3.66
1764 2301 2.636830 AGCAACTGTATCTCACCATGC 58.363 47.619 0.00 0.00 0.00 4.06
1765 2302 2.026915 AGCAACTGTATCTCACCATGCA 60.027 45.455 0.00 0.00 35.11 3.96
1766 2303 2.947652 GCAACTGTATCTCACCATGCAT 59.052 45.455 0.00 0.00 33.00 3.96
1767 2304 3.242969 GCAACTGTATCTCACCATGCATG 60.243 47.826 20.19 20.19 33.00 4.06
1779 2316 1.934589 CATGCATGGATTTGGTGCTG 58.065 50.000 19.40 0.00 39.52 4.41
1780 2317 1.206132 CATGCATGGATTTGGTGCTGT 59.794 47.619 19.40 0.00 39.52 4.40
1781 2318 1.340088 TGCATGGATTTGGTGCTGTT 58.660 45.000 0.00 0.00 39.52 3.16
1782 2319 1.693062 TGCATGGATTTGGTGCTGTTT 59.307 42.857 0.00 0.00 39.52 2.83
1783 2320 2.896044 TGCATGGATTTGGTGCTGTTTA 59.104 40.909 0.00 0.00 39.52 2.01
1784 2321 3.514706 TGCATGGATTTGGTGCTGTTTAT 59.485 39.130 0.00 0.00 39.52 1.40
1785 2322 4.020396 TGCATGGATTTGGTGCTGTTTATT 60.020 37.500 0.00 0.00 39.52 1.40
1786 2323 4.937015 GCATGGATTTGGTGCTGTTTATTT 59.063 37.500 0.00 0.00 36.02 1.40
1787 2324 5.163834 GCATGGATTTGGTGCTGTTTATTTG 60.164 40.000 0.00 0.00 36.02 2.32
1788 2325 4.892433 TGGATTTGGTGCTGTTTATTTGG 58.108 39.130 0.00 0.00 0.00 3.28
1789 2326 4.346418 TGGATTTGGTGCTGTTTATTTGGT 59.654 37.500 0.00 0.00 0.00 3.67
1790 2327 4.929211 GGATTTGGTGCTGTTTATTTGGTC 59.071 41.667 0.00 0.00 0.00 4.02
1791 2328 5.510520 GGATTTGGTGCTGTTTATTTGGTCA 60.511 40.000 0.00 0.00 0.00 4.02
1792 2329 5.543507 TTTGGTGCTGTTTATTTGGTCAT 57.456 34.783 0.00 0.00 0.00 3.06
1793 2330 5.543507 TTGGTGCTGTTTATTTGGTCATT 57.456 34.783 0.00 0.00 0.00 2.57
1794 2331 6.656632 TTGGTGCTGTTTATTTGGTCATTA 57.343 33.333 0.00 0.00 0.00 1.90
1795 2332 6.019779 TGGTGCTGTTTATTTGGTCATTAC 57.980 37.500 0.00 0.00 0.00 1.89
1796 2333 5.772672 TGGTGCTGTTTATTTGGTCATTACT 59.227 36.000 0.00 0.00 0.00 2.24
1797 2334 6.943146 TGGTGCTGTTTATTTGGTCATTACTA 59.057 34.615 0.00 0.00 0.00 1.82
1798 2335 7.120579 TGGTGCTGTTTATTTGGTCATTACTAG 59.879 37.037 0.00 0.00 0.00 2.57
1799 2336 7.120726 GGTGCTGTTTATTTGGTCATTACTAGT 59.879 37.037 0.00 0.00 0.00 2.57
1800 2337 9.158233 GTGCTGTTTATTTGGTCATTACTAGTA 57.842 33.333 0.00 0.00 0.00 1.82
1801 2338 9.727859 TGCTGTTTATTTGGTCATTACTAGTAA 57.272 29.630 17.41 17.41 0.00 2.24
1802 2339 9.983804 GCTGTTTATTTGGTCATTACTAGTAAC 57.016 33.333 17.45 6.10 0.00 2.50
1809 2346 8.426569 TTTGGTCATTACTAGTAACAGTACCT 57.573 34.615 23.97 7.56 30.76 3.08
1810 2347 7.636150 TGGTCATTACTAGTAACAGTACCTC 57.364 40.000 23.97 10.94 30.76 3.85
1851 2388 9.780186 GCTATTTATTTGGTCAGTAGGAGTATT 57.220 33.333 0.00 0.00 0.00 1.89
1858 2395 5.269991 TGGTCAGTAGGAGTATTAGCAACT 58.730 41.667 0.00 0.00 0.00 3.16
1872 2409 2.636830 AGCAACTGTATCTCACCATGC 58.363 47.619 0.00 0.00 0.00 4.06
1986 2523 0.454600 CGCTCTTTGGCCTCTACGTA 59.545 55.000 3.32 0.00 0.00 3.57
2030 2567 0.183014 AGGATGGAGAGCAAGCATGG 59.817 55.000 0.00 0.00 0.00 3.66
2054 2591 1.541588 GGAGAATGGTGCACAAGAACC 59.458 52.381 20.43 10.46 44.61 3.62
2106 2643 0.835941 CAAGTGAGGAGCTGCCCTAT 59.164 55.000 0.00 0.00 36.49 2.57
2119 2656 1.032114 GCCCTATGTGCACTTCCCAC 61.032 60.000 19.41 0.00 0.00 4.61
2165 2702 2.478872 TCCTCTTAGGACAGGATGGG 57.521 55.000 0.00 0.00 40.06 4.00
2170 2707 4.473559 CCTCTTAGGACAGGATGGGTAAAA 59.526 45.833 0.00 0.00 43.62 1.52
2208 2745 2.883026 TCCCCCTTTTGTGTATGTTGG 58.117 47.619 0.00 0.00 0.00 3.77
2221 2758 4.967575 GTGTATGTTGGTTTTTCTGACACG 59.032 41.667 0.00 0.00 0.00 4.49
2274 2811 2.609459 GGAATGCTCGTGTAATCCTGTG 59.391 50.000 2.81 0.00 0.00 3.66
2322 2859 1.916181 AGATCGGGAAGTGGATGGTTT 59.084 47.619 0.00 0.00 0.00 3.27
2553 3090 8.821686 TTTCTTGGTCCATGTGATATATTTGT 57.178 30.769 4.76 0.00 0.00 2.83
2646 3203 4.381932 GCTGTGCCTTGCCATAGTTATTTT 60.382 41.667 0.00 0.00 0.00 1.82
2831 3388 7.382488 GCTATGTCATGTCACGTTAATGATACT 59.618 37.037 0.58 0.93 33.19 2.12
2832 3389 9.249457 CTATGTCATGTCACGTTAATGATACTT 57.751 33.333 0.58 0.00 33.19 2.24
2862 3419 1.247567 AAAGCCAGGTTGGTCAATCG 58.752 50.000 0.00 0.00 40.46 3.34
2900 3457 7.793927 TGATGTTTGTATTGTTCAGTGTACA 57.206 32.000 0.00 0.00 0.00 2.90
2916 3473 7.812648 TCAGTGTACAATTAGCATTAACAACC 58.187 34.615 0.00 0.00 0.00 3.77
2974 3532 4.857871 TGTCATTAACTGCTATCGTTGC 57.142 40.909 0.00 0.00 0.00 4.17
3148 3706 1.804748 GGAACCCACAAATCTCACGTC 59.195 52.381 0.00 0.00 0.00 4.34
3201 3759 9.162764 GCACAGAGAATTCCAGTAAATTTACTA 57.837 33.333 26.38 14.53 41.82 1.82
3226 3784 2.373169 TGACTTTGCTCTGTTCCCTCAT 59.627 45.455 0.00 0.00 0.00 2.90
3362 3920 7.420184 AACTTTGAACTTTTGGTGAAACTTG 57.580 32.000 0.00 0.00 36.74 3.16
3406 3964 6.569179 AAGAAATATTGTAACGCCAGTGTT 57.431 33.333 1.77 1.77 35.86 3.32
3431 3989 7.392418 TGATAATATCTGGAAGGAGCAGAATG 58.608 38.462 1.66 0.00 40.87 2.67
3444 4002 7.530426 AGGAGCAGAATGAAATGTTAAAACT 57.470 32.000 0.00 0.00 39.69 2.66
3526 4084 2.185004 ACCTGTTGGTCATACTGTGC 57.815 50.000 0.00 0.00 44.78 4.57
3527 4085 1.271379 ACCTGTTGGTCATACTGTGCC 60.271 52.381 0.00 0.00 44.78 5.01
3674 4232 1.024271 GCTTGGACAGCTTCAACACA 58.976 50.000 0.00 0.00 46.27 3.72
3753 4311 2.731572 AGAACTCATTTGGATGCCCTG 58.268 47.619 0.00 0.00 33.14 4.45
3790 4348 8.976986 ATAGATTACGGTTTACCTTAATAGCG 57.023 34.615 9.78 0.00 39.60 4.26
3888 4446 3.877559 CAGGCAGGTGAAGATTCATACA 58.122 45.455 0.00 0.00 39.73 2.29
3930 4488 2.566746 AGGAACTGGGAGGATGTGAAT 58.433 47.619 0.00 0.00 37.18 2.57
3997 4555 3.994392 AGATTACGTGAAGTGATGCGTTT 59.006 39.130 0.00 0.00 38.56 3.60
4044 4654 4.460382 TCATTTGCAAGGGATTCTTCAGAC 59.540 41.667 0.00 0.00 32.41 3.51
4045 4655 2.496899 TGCAAGGGATTCTTCAGACC 57.503 50.000 0.00 0.00 32.41 3.85
4059 4669 1.427753 TCAGACCCCACAGAGTAGTGA 59.572 52.381 0.00 0.00 42.05 3.41
4143 4753 5.344665 GTGCATGAAGCTTAGAGATCGATAC 59.655 44.000 0.00 0.00 45.94 2.24
4297 4910 4.589908 TCAGCTACATTTCTTCCCCTTTC 58.410 43.478 0.00 0.00 0.00 2.62
4314 4927 5.414765 CCCCTTTCTTTTATGCTTTCTACGT 59.585 40.000 0.00 0.00 0.00 3.57
4315 4928 6.314784 CCCTTTCTTTTATGCTTTCTACGTG 58.685 40.000 0.00 0.00 0.00 4.49
4350 4963 6.331061 AGCTACGAAGTAACTCACTATTTGG 58.669 40.000 0.00 0.00 45.13 3.28
4358 4971 9.827411 GAAGTAACTCACTATTTGGATTCAAAC 57.173 33.333 0.00 0.00 40.05 2.93
4372 4985 9.527157 TTTGGATTCAAACTTGGATAATACTCA 57.473 29.630 0.00 0.00 37.89 3.41
4373 4986 9.699410 TTGGATTCAAACTTGGATAATACTCAT 57.301 29.630 0.00 0.00 0.00 2.90
4405 5018 9.545105 TTGGATTCAAATTTGGATAATGCATAC 57.455 29.630 19.12 4.71 29.75 2.39
4406 5019 8.926374 TGGATTCAAATTTGGATAATGCATACT 58.074 29.630 17.90 0.00 0.00 2.12
4417 5030 9.585369 TTGGATAATGCATACTATTTGGATTCA 57.415 29.630 0.00 0.00 36.64 2.57
4418 5031 9.585369 TGGATAATGCATACTATTTGGATTCAA 57.415 29.630 0.00 0.00 36.64 2.69
4494 5109 2.038557 AGTACAAAGGCTAGGGTGTGTG 59.961 50.000 0.00 0.00 0.00 3.82
4512 5127 3.100671 TGTGTGGTTTTAAGCCCAAGTT 58.899 40.909 0.00 0.00 31.17 2.66
4517 5132 2.158885 GGTTTTAAGCCCAAGTTTGCCA 60.159 45.455 0.00 0.00 0.00 4.92
4520 5135 2.300956 TAAGCCCAAGTTTGCCATCA 57.699 45.000 0.00 0.00 0.00 3.07
4523 5138 1.974543 CCCAAGTTTGCCATCACCC 59.025 57.895 0.00 0.00 0.00 4.61
4558 5174 9.366216 GAAAAGAACAAGTTTGTCTTACCAAAT 57.634 29.630 0.00 0.00 41.31 2.32
4561 5177 8.166422 AGAACAAGTTTGTCTTACCAAATAGG 57.834 34.615 0.00 0.00 41.31 2.57
4562 5178 7.996644 AGAACAAGTTTGTCTTACCAAATAGGA 59.003 33.333 0.00 0.00 41.31 2.94
4563 5179 7.745620 ACAAGTTTGTCTTACCAAATAGGAG 57.254 36.000 0.00 0.00 36.60 3.69
4637 5270 3.736100 TGGCAAGCGAACGCATGG 61.736 61.111 21.87 11.91 44.88 3.66
4650 5283 1.953686 ACGCATGGCAGTTTTAGTTGT 59.046 42.857 0.00 0.00 0.00 3.32
4651 5284 2.031157 ACGCATGGCAGTTTTAGTTGTC 60.031 45.455 0.00 0.00 0.00 3.18
4654 5287 3.612479 GCATGGCAGTTTTAGTTGTCAGG 60.612 47.826 0.00 0.00 34.18 3.86
4657 5290 3.630312 TGGCAGTTTTAGTTGTCAGGAAC 59.370 43.478 0.00 0.00 0.00 3.62
4658 5291 3.630312 GGCAGTTTTAGTTGTCAGGAACA 59.370 43.478 0.00 0.00 35.59 3.18
4659 5292 4.497507 GGCAGTTTTAGTTGTCAGGAACAC 60.498 45.833 0.00 0.00 37.70 3.32
4660 5293 4.095782 GCAGTTTTAGTTGTCAGGAACACA 59.904 41.667 0.00 0.00 37.70 3.72
4661 5294 5.221048 GCAGTTTTAGTTGTCAGGAACACAT 60.221 40.000 0.00 0.00 37.70 3.21
4662 5295 6.201517 CAGTTTTAGTTGTCAGGAACACATG 58.798 40.000 0.00 0.00 37.70 3.21
4663 5296 5.299279 AGTTTTAGTTGTCAGGAACACATGG 59.701 40.000 0.00 0.00 37.70 3.66
4664 5297 1.609208 AGTTGTCAGGAACACATGGC 58.391 50.000 0.00 0.00 37.70 4.40
4665 5298 1.133823 AGTTGTCAGGAACACATGGCA 60.134 47.619 0.00 0.00 37.70 4.92
4667 5300 0.473755 TGTCAGGAACACATGGCAGT 59.526 50.000 0.00 0.00 31.20 4.40
4668 5301 1.133823 TGTCAGGAACACATGGCAGTT 60.134 47.619 0.00 0.00 31.20 3.16
4684 5348 4.819630 TGGCAGTTAGTTTTAGTTGTGAGG 59.180 41.667 0.00 0.00 0.00 3.86
4696 5360 7.873719 TTTAGTTGTGAGGAAAGATCAAACA 57.126 32.000 0.00 0.00 0.00 2.83
4698 5362 6.136541 AGTTGTGAGGAAAGATCAAACAAC 57.863 37.500 7.50 7.50 40.85 3.32
4703 5367 2.554032 AGGAAAGATCAAACAACGGCAG 59.446 45.455 0.00 0.00 0.00 4.85
4716 5383 6.541111 AACAACGGCAGTTTTAAAACAAAA 57.459 29.167 28.03 0.00 41.30 2.44
4734 5401 9.612066 AAAACAAAAATGCCTTCTATGAAGAAA 57.388 25.926 8.69 0.00 41.19 2.52
4736 5403 7.725251 ACAAAAATGCCTTCTATGAAGAAACA 58.275 30.769 8.69 4.95 41.19 2.83
4737 5404 8.370182 ACAAAAATGCCTTCTATGAAGAAACAT 58.630 29.630 8.69 6.72 41.19 2.71
4738 5405 9.859427 CAAAAATGCCTTCTATGAAGAAACATA 57.141 29.630 8.69 0.00 41.19 2.29
4741 5408 9.860898 AAATGCCTTCTATGAAGAAACATAAAC 57.139 29.630 8.69 0.00 41.19 2.01
4742 5409 8.814038 ATGCCTTCTATGAAGAAACATAAACT 57.186 30.769 8.69 0.00 41.19 2.66
4743 5410 8.044060 TGCCTTCTATGAAGAAACATAAACTG 57.956 34.615 8.69 0.00 41.19 3.16
4744 5411 7.665559 TGCCTTCTATGAAGAAACATAAACTGT 59.334 33.333 8.69 0.00 41.19 3.55
4782 5449 0.679002 CTGCCATCCCCTCACAACTG 60.679 60.000 0.00 0.00 0.00 3.16
4789 5456 2.238521 TCCCCTCACAACTGAAAATGC 58.761 47.619 0.00 0.00 0.00 3.56
4792 5459 2.364970 CCCTCACAACTGAAAATGCCAA 59.635 45.455 0.00 0.00 0.00 4.52
4814 5481 3.987220 ACTAAAACATTCGCAAATGCCAC 59.013 39.130 0.00 0.00 45.16 5.01
4816 5483 0.388391 AACATTCGCAAATGCCACCG 60.388 50.000 0.00 0.00 45.16 4.94
4818 5485 0.388391 CATTCGCAAATGCCACCGTT 60.388 50.000 0.00 0.00 36.15 4.44
4820 5487 2.450960 TTCGCAAATGCCACCGTTCG 62.451 55.000 0.00 0.00 37.91 3.95
4821 5488 2.804931 GCAAATGCCACCGTTCGC 60.805 61.111 0.00 0.00 34.31 4.70
4822 5489 2.126502 CAAATGCCACCGTTCGCC 60.127 61.111 0.00 0.00 0.00 5.54
4823 5490 2.596046 AAATGCCACCGTTCGCCA 60.596 55.556 0.00 0.00 0.00 5.69
4827 6487 2.357760 GCCACCGTTCGCCAGTTA 60.358 61.111 0.00 0.00 0.00 2.24
4833 6493 0.515564 CCGTTCGCCAGTTAAACAGG 59.484 55.000 0.00 0.00 0.00 4.00
4841 6501 3.344515 GCCAGTTAAACAGGGTCCTTAG 58.655 50.000 0.00 0.00 0.00 2.18
4842 6502 3.344515 CCAGTTAAACAGGGTCCTTAGC 58.655 50.000 0.00 0.00 0.00 3.09
4862 6522 2.029110 GCTTTTGGCTGCCAATGAGTTA 60.029 45.455 32.62 15.55 43.55 2.24
4910 6570 7.801716 ACTAAAGTGCACAAAGAGTTATTGA 57.198 32.000 21.04 0.00 0.00 2.57
4946 6606 4.381932 CCATGACTCAAAATTTGGTAGGGC 60.382 45.833 5.83 0.00 0.00 5.19
5083 6743 2.741985 CGCTGCGGATCAACACCA 60.742 61.111 15.40 0.00 0.00 4.17
5191 6852 4.617875 GACAGGTAATGGCGTGCT 57.382 55.556 0.00 0.00 0.00 4.40
5192 6853 2.854522 GACAGGTAATGGCGTGCTT 58.145 52.632 0.00 0.00 0.00 3.91
5193 6854 0.447801 GACAGGTAATGGCGTGCTTG 59.552 55.000 0.00 0.00 0.00 4.01
5194 6855 0.960364 ACAGGTAATGGCGTGCTTGG 60.960 55.000 0.00 0.00 0.00 3.61
5195 6856 0.676466 CAGGTAATGGCGTGCTTGGA 60.676 55.000 0.00 0.00 0.00 3.53
5196 6857 0.255890 AGGTAATGGCGTGCTTGGAT 59.744 50.000 0.00 0.00 0.00 3.41
5197 6858 0.663153 GGTAATGGCGTGCTTGGATC 59.337 55.000 0.00 0.00 0.00 3.36
5198 6859 1.378531 GTAATGGCGTGCTTGGATCA 58.621 50.000 0.00 0.00 0.00 2.92
5279 6940 2.473816 TCGTTGTTCTCTTGAGCACTG 58.526 47.619 2.56 0.00 33.21 3.66
5387 7048 1.720694 CCTCCTCGTCGCTCTCTTCC 61.721 65.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.160679 ACTAGCAGCCAAATCCAAACT 57.839 42.857 0.00 0.00 0.00 2.66
1 2 3.181496 GCTACTAGCAGCCAAATCCAAAC 60.181 47.826 3.30 0.00 41.89 2.93
3 4 2.239654 AGCTACTAGCAGCCAAATCCAA 59.760 45.455 11.50 0.00 45.56 3.53
4 5 1.839994 AGCTACTAGCAGCCAAATCCA 59.160 47.619 11.50 0.00 45.56 3.41
5 6 2.629336 AGCTACTAGCAGCCAAATCC 57.371 50.000 11.50 0.00 45.56 3.01
6 7 3.999663 CCATAGCTACTAGCAGCCAAATC 59.000 47.826 11.50 0.00 45.56 2.17
7 8 3.808618 GCCATAGCTACTAGCAGCCAAAT 60.809 47.826 11.50 0.68 45.56 2.32
8 9 2.485479 GCCATAGCTACTAGCAGCCAAA 60.485 50.000 11.50 0.00 45.56 3.28
9 10 1.070758 GCCATAGCTACTAGCAGCCAA 59.929 52.381 11.50 0.70 45.56 4.52
10 11 0.681733 GCCATAGCTACTAGCAGCCA 59.318 55.000 11.50 0.00 45.56 4.75
11 12 0.036858 GGCCATAGCTACTAGCAGCC 60.037 60.000 11.50 11.94 45.56 4.85
12 13 0.972883 AGGCCATAGCTACTAGCAGC 59.027 55.000 5.01 6.87 45.56 5.25
13 14 3.131933 CCATAGGCCATAGCTACTAGCAG 59.868 52.174 5.01 0.25 45.56 4.24
14 15 3.099905 CCATAGGCCATAGCTACTAGCA 58.900 50.000 5.01 0.00 45.56 3.49
15 16 2.432510 CCCATAGGCCATAGCTACTAGC 59.567 54.545 5.01 0.00 42.84 3.42
16 17 3.034635 CCCCATAGGCCATAGCTACTAG 58.965 54.545 5.01 0.00 39.73 2.57
17 18 2.385765 ACCCCATAGGCCATAGCTACTA 59.614 50.000 5.01 0.00 40.58 1.82
18 19 1.152271 ACCCCATAGGCCATAGCTACT 59.848 52.381 5.01 0.00 40.58 2.57
19 20 1.555533 GACCCCATAGGCCATAGCTAC 59.444 57.143 5.01 0.00 40.58 3.58
20 21 1.895422 CGACCCCATAGGCCATAGCTA 60.895 57.143 5.01 0.00 40.58 3.32
21 22 1.194781 CGACCCCATAGGCCATAGCT 61.195 60.000 5.01 0.00 40.58 3.32
22 23 1.192146 TCGACCCCATAGGCCATAGC 61.192 60.000 5.01 0.00 40.58 2.97
23 24 1.573108 ATCGACCCCATAGGCCATAG 58.427 55.000 5.01 0.00 40.58 2.23
24 25 2.038863 AATCGACCCCATAGGCCATA 57.961 50.000 5.01 0.00 40.58 2.74
25 26 1.149101 AAATCGACCCCATAGGCCAT 58.851 50.000 5.01 0.00 40.58 4.40
26 27 0.923358 AAAATCGACCCCATAGGCCA 59.077 50.000 5.01 0.00 40.58 5.36
27 28 1.681264 CAAAAATCGACCCCATAGGCC 59.319 52.381 0.00 0.00 40.58 5.19
28 29 2.099098 CACAAAAATCGACCCCATAGGC 59.901 50.000 0.00 0.00 40.58 3.93
29 30 2.687935 CCACAAAAATCGACCCCATAGG 59.312 50.000 0.00 0.00 43.78 2.57
30 31 2.687935 CCCACAAAAATCGACCCCATAG 59.312 50.000 0.00 0.00 0.00 2.23
31 32 2.729194 CCCACAAAAATCGACCCCATA 58.271 47.619 0.00 0.00 0.00 2.74
32 33 1.555967 CCCACAAAAATCGACCCCAT 58.444 50.000 0.00 0.00 0.00 4.00
33 34 1.182385 GCCCACAAAAATCGACCCCA 61.182 55.000 0.00 0.00 0.00 4.96
34 35 0.898326 AGCCCACAAAAATCGACCCC 60.898 55.000 0.00 0.00 0.00 4.95
35 36 0.243636 CAGCCCACAAAAATCGACCC 59.756 55.000 0.00 0.00 0.00 4.46
36 37 0.243636 CCAGCCCACAAAAATCGACC 59.756 55.000 0.00 0.00 0.00 4.79
63 65 4.421479 ACGCCTCGAAGCTCCACG 62.421 66.667 4.21 0.00 0.00 4.94
67 69 4.742201 TGCCACGCCTCGAAGCTC 62.742 66.667 4.21 0.00 32.08 4.09
84 86 1.271379 TCGTCAACGTAATGTGCCTCT 59.729 47.619 2.09 0.00 40.80 3.69
87 89 3.413558 GAAATCGTCAACGTAATGTGCC 58.586 45.455 2.09 0.00 40.80 5.01
118 120 4.655762 ACCAAGAAGCAAAGGAGAAAAC 57.344 40.909 0.00 0.00 0.00 2.43
126 128 3.501950 GGCGAATTACCAAGAAGCAAAG 58.498 45.455 0.00 0.00 0.00 2.77
200 202 0.107165 GCCCGCCCTCTGATAAACTT 60.107 55.000 0.00 0.00 0.00 2.66
202 204 0.393808 TTGCCCGCCCTCTGATAAAC 60.394 55.000 0.00 0.00 0.00 2.01
204 206 0.393808 GTTTGCCCGCCCTCTGATAA 60.394 55.000 0.00 0.00 0.00 1.75
206 208 2.044946 GTTTGCCCGCCCTCTGAT 60.045 61.111 0.00 0.00 0.00 2.90
301 308 4.453819 GCAATTACCAGATCATAGCAGGAC 59.546 45.833 0.00 0.00 0.00 3.85
381 568 2.369860 CAGCTGTTCCATGGATAGGCTA 59.630 50.000 25.16 6.51 0.00 3.93
383 570 1.602311 CAGCTGTTCCATGGATAGGC 58.398 55.000 17.06 18.48 0.00 3.93
399 586 4.735132 TAGTCCACGCGCACCAGC 62.735 66.667 5.73 0.00 37.42 4.85
409 596 0.519999 CGCGTACGTGACTAGTCCAC 60.520 60.000 23.95 15.76 33.53 4.02
444 631 1.003839 TTCTCCAAATGTCGCCGCT 60.004 52.632 0.00 0.00 0.00 5.52
548 738 2.159085 AGCGGTTTCATCAGGCTAGTAC 60.159 50.000 0.00 0.00 31.03 2.73
550 740 0.905357 AGCGGTTTCATCAGGCTAGT 59.095 50.000 0.00 0.00 31.03 2.57
551 741 2.029838 AAGCGGTTTCATCAGGCTAG 57.970 50.000 0.00 0.00 32.82 3.42
677 869 4.142469 GGTGAACCATCGATTAAACCAAGG 60.142 45.833 0.00 0.00 35.64 3.61
718 913 3.343617 TGCGGAGGAATTCGATCTTTTT 58.656 40.909 0.00 0.00 0.00 1.94
719 914 2.985896 TGCGGAGGAATTCGATCTTTT 58.014 42.857 0.00 0.00 0.00 2.27
722 917 1.688735 TGATGCGGAGGAATTCGATCT 59.311 47.619 0.00 0.00 0.00 2.75
723 918 2.154854 TGATGCGGAGGAATTCGATC 57.845 50.000 0.00 0.08 0.00 3.69
724 919 2.158900 AGTTGATGCGGAGGAATTCGAT 60.159 45.455 0.00 0.00 0.00 3.59
725 920 1.207089 AGTTGATGCGGAGGAATTCGA 59.793 47.619 0.00 0.00 0.00 3.71
726 921 1.656652 AGTTGATGCGGAGGAATTCG 58.343 50.000 0.00 0.00 0.00 3.34
741 1029 5.483811 GGAGGAAGAGGAAGAAACTAGTTG 58.516 45.833 9.34 0.00 0.00 3.16
747 1035 1.066071 CGGGGAGGAAGAGGAAGAAAC 60.066 57.143 0.00 0.00 0.00 2.78
755 1077 1.215647 CAACGACGGGGAGGAAGAG 59.784 63.158 0.00 0.00 0.00 2.85
761 1083 2.358247 CCAACCAACGACGGGGAG 60.358 66.667 13.87 6.48 0.00 4.30
775 1101 2.534042 TTGGAAAGGGTGTGAACCAA 57.466 45.000 0.00 0.00 35.48 3.67
807 1133 4.141551 GGAATGGAGTAGGAACGGGTTTAT 60.142 45.833 0.00 0.00 0.00 1.40
808 1134 3.198417 GGAATGGAGTAGGAACGGGTTTA 59.802 47.826 0.00 0.00 0.00 2.01
863 1189 1.798813 GAATGAACGAGCTCGGTTTGT 59.201 47.619 36.93 20.93 40.66 2.83
865 1191 1.068474 CGAATGAACGAGCTCGGTTT 58.932 50.000 36.93 24.60 40.66 3.27
866 1192 0.038526 ACGAATGAACGAGCTCGGTT 60.039 50.000 36.93 27.32 40.66 4.44
868 1194 1.189403 GTACGAATGAACGAGCTCGG 58.811 55.000 36.93 20.87 44.95 4.63
870 1196 2.159421 TGGAGTACGAATGAACGAGCTC 60.159 50.000 2.73 2.73 37.12 4.09
871 1197 1.816835 TGGAGTACGAATGAACGAGCT 59.183 47.619 0.00 0.00 37.03 4.09
872 1198 2.273370 TGGAGTACGAATGAACGAGC 57.727 50.000 0.00 0.00 37.03 5.03
873 1199 6.439599 AGATAATGGAGTACGAATGAACGAG 58.560 40.000 0.00 0.00 37.03 4.18
874 1200 6.387041 AGATAATGGAGTACGAATGAACGA 57.613 37.500 0.00 0.00 37.03 3.85
875 1201 5.629849 GGAGATAATGGAGTACGAATGAACG 59.370 44.000 0.00 0.00 39.31 3.95
876 1202 5.927115 GGGAGATAATGGAGTACGAATGAAC 59.073 44.000 0.00 0.00 0.00 3.18
877 1203 5.839063 AGGGAGATAATGGAGTACGAATGAA 59.161 40.000 0.00 0.00 0.00 2.57
880 1206 4.459685 CGAGGGAGATAATGGAGTACGAAT 59.540 45.833 0.00 0.00 0.00 3.34
925 1307 0.959553 AGAAGAGTCGCACGAAGGAA 59.040 50.000 0.00 0.00 0.00 3.36
926 1308 0.522180 GAGAAGAGTCGCACGAAGGA 59.478 55.000 0.00 0.00 0.00 3.36
927 1309 0.523966 AGAGAAGAGTCGCACGAAGG 59.476 55.000 0.00 0.00 0.00 3.46
928 1310 2.246789 GAAGAGAAGAGTCGCACGAAG 58.753 52.381 0.00 0.00 0.00 3.79
929 1311 1.068472 GGAAGAGAAGAGTCGCACGAA 60.068 52.381 0.00 0.00 0.00 3.85
931 1313 0.794981 CGGAAGAGAAGAGTCGCACG 60.795 60.000 0.00 0.00 0.00 5.34
933 1315 0.959553 AACGGAAGAGAAGAGTCGCA 59.040 50.000 0.00 0.00 0.00 5.10
935 1317 2.265647 GGAACGGAAGAGAAGAGTCG 57.734 55.000 0.00 0.00 0.00 4.18
988 1388 0.541530 AGACAGACAGGCAGCTGAGA 60.542 55.000 20.43 0.00 36.07 3.27
1060 1489 0.827507 GAAGAACCCAAAGGCAGGCA 60.828 55.000 0.00 0.00 36.11 4.75
1062 1491 1.866853 GCGAAGAACCCAAAGGCAGG 61.867 60.000 0.00 0.00 36.11 4.85
1064 1493 1.901464 GGCGAAGAACCCAAAGGCA 60.901 57.895 0.00 0.00 36.11 4.75
1066 1495 2.978018 GCGGCGAAGAACCCAAAGG 61.978 63.158 12.98 0.00 40.04 3.11
1087 1516 2.272146 GGCCGGATTTGAGCTCCA 59.728 61.111 12.15 0.00 32.72 3.86
1135 1564 4.951963 CGAATCTCCCGCCGAGGC 62.952 72.222 3.59 3.59 39.30 4.70
1165 1594 1.733399 GAAAGAGAGCGCGTTCCGT 60.733 57.895 19.83 3.95 39.71 4.69
1174 1603 4.775236 AGAGAGAGAGAGAGAAAGAGAGC 58.225 47.826 0.00 0.00 0.00 4.09
1181 1634 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
1205 1658 6.672946 ATGGTGGAGGAGATAGATAGAGAT 57.327 41.667 0.00 0.00 0.00 2.75
1213 1666 3.006323 CCGAGAAATGGTGGAGGAGATAG 59.994 52.174 0.00 0.00 0.00 2.08
1217 1670 0.462759 GCCGAGAAATGGTGGAGGAG 60.463 60.000 0.00 0.00 0.00 3.69
1219 1672 1.815421 CGCCGAGAAATGGTGGAGG 60.815 63.158 0.00 0.00 33.29 4.30
1220 1673 2.464459 GCGCCGAGAAATGGTGGAG 61.464 63.158 0.00 0.00 37.47 3.86
1224 1737 0.965363 ATTTGGCGCCGAGAAATGGT 60.965 50.000 23.90 0.00 0.00 3.55
1272 1785 1.694133 CCTAGGCTGAGCTGAAGGGG 61.694 65.000 3.72 0.00 0.00 4.79
1277 1790 0.041833 AGAACCCTAGGCTGAGCTGA 59.958 55.000 3.72 0.00 0.00 4.26
1279 1792 0.689412 GGAGAACCCTAGGCTGAGCT 60.689 60.000 3.72 0.00 0.00 4.09
1280 1793 0.689412 AGGAGAACCCTAGGCTGAGC 60.689 60.000 2.05 0.00 45.48 4.26
1348 1861 4.380531 CACCAAGACTGCTAGTTTCAGAA 58.619 43.478 3.21 0.00 35.61 3.02
1350 1863 2.481952 GCACCAAGACTGCTAGTTTCAG 59.518 50.000 0.00 0.00 37.56 3.02
1356 1869 0.322975 ACCAGCACCAAGACTGCTAG 59.677 55.000 0.00 0.00 43.34 3.42
1382 1898 9.920826 GCAAAAAGAAAAGAAAAACTCATAAGG 57.079 29.630 0.00 0.00 0.00 2.69
1387 1903 5.350091 CCCGCAAAAAGAAAAGAAAAACTCA 59.650 36.000 0.00 0.00 0.00 3.41
1393 1909 4.081917 ACACTCCCGCAAAAAGAAAAGAAA 60.082 37.500 0.00 0.00 0.00 2.52
1456 1987 2.586079 CGCGCATCCTGGTAGGTG 60.586 66.667 8.75 0.00 36.53 4.00
1485 2016 2.819595 GCCATGTGCGACGGATGT 60.820 61.111 0.00 0.00 0.00 3.06
1491 2022 2.177531 CAGCTTGCCATGTGCGAC 59.822 61.111 0.00 0.00 45.60 5.19
1492 2023 3.740397 GCAGCTTGCCATGTGCGA 61.740 61.111 0.00 0.00 45.60 5.10
1536 2070 0.460987 AGCAGAGTAACATGCCGAGC 60.461 55.000 0.00 0.00 43.60 5.03
1573 2107 4.323477 TGGGCCGGTTTCTGGTCG 62.323 66.667 1.90 0.00 29.54 4.79
1595 2129 7.095695 AGTCTGTAGCAGAAGAAGATTCTAC 57.904 40.000 0.00 0.00 42.46 2.59
1735 2272 6.697892 GGTGAGATACAGTTGCTAATACTGAC 59.302 42.308 9.74 2.06 44.52 3.51
1760 2297 1.206132 ACAGCACCAAATCCATGCATG 59.794 47.619 20.19 20.19 41.97 4.06
1761 2298 1.563924 ACAGCACCAAATCCATGCAT 58.436 45.000 0.00 0.00 41.97 3.96
1762 2299 1.340088 AACAGCACCAAATCCATGCA 58.660 45.000 0.00 0.00 41.97 3.96
1763 2300 2.460757 AAACAGCACCAAATCCATGC 57.539 45.000 0.00 0.00 39.74 4.06
1764 2301 5.352016 CCAAATAAACAGCACCAAATCCATG 59.648 40.000 0.00 0.00 0.00 3.66
1765 2302 5.012975 ACCAAATAAACAGCACCAAATCCAT 59.987 36.000 0.00 0.00 0.00 3.41
1766 2303 4.346418 ACCAAATAAACAGCACCAAATCCA 59.654 37.500 0.00 0.00 0.00 3.41
1767 2304 4.893608 ACCAAATAAACAGCACCAAATCC 58.106 39.130 0.00 0.00 0.00 3.01
1768 2305 5.537188 TGACCAAATAAACAGCACCAAATC 58.463 37.500 0.00 0.00 0.00 2.17
1769 2306 5.543507 TGACCAAATAAACAGCACCAAAT 57.456 34.783 0.00 0.00 0.00 2.32
1770 2307 5.543507 ATGACCAAATAAACAGCACCAAA 57.456 34.783 0.00 0.00 0.00 3.28
1771 2308 5.543507 AATGACCAAATAAACAGCACCAA 57.456 34.783 0.00 0.00 0.00 3.67
1772 2309 5.772672 AGTAATGACCAAATAAACAGCACCA 59.227 36.000 0.00 0.00 0.00 4.17
1773 2310 6.267496 AGTAATGACCAAATAAACAGCACC 57.733 37.500 0.00 0.00 0.00 5.01
1774 2311 8.040716 ACTAGTAATGACCAAATAAACAGCAC 57.959 34.615 0.00 0.00 0.00 4.40
1775 2312 9.727859 TTACTAGTAATGACCAAATAAACAGCA 57.272 29.630 11.38 0.00 0.00 4.41
1776 2313 9.983804 GTTACTAGTAATGACCAAATAAACAGC 57.016 33.333 18.03 0.00 0.00 4.40
1783 2320 9.043548 AGGTACTGTTACTAGTAATGACCAAAT 57.956 33.333 24.84 12.57 37.18 2.32
1784 2321 8.426569 AGGTACTGTTACTAGTAATGACCAAA 57.573 34.615 24.84 9.46 37.18 3.28
1785 2322 7.670979 TGAGGTACTGTTACTAGTAATGACCAA 59.329 37.037 24.84 16.61 41.55 3.67
1786 2323 7.121759 GTGAGGTACTGTTACTAGTAATGACCA 59.878 40.741 24.84 16.38 41.55 4.02
1787 2324 7.416101 GGTGAGGTACTGTTACTAGTAATGACC 60.416 44.444 18.03 19.31 41.55 4.02
1788 2325 7.121759 TGGTGAGGTACTGTTACTAGTAATGAC 59.878 40.741 18.03 12.70 41.55 3.06
1789 2326 7.177184 TGGTGAGGTACTGTTACTAGTAATGA 58.823 38.462 18.03 7.70 41.55 2.57
1790 2327 7.400599 TGGTGAGGTACTGTTACTAGTAATG 57.599 40.000 18.03 15.42 41.55 1.90
1791 2328 7.069578 CCATGGTGAGGTACTGTTACTAGTAAT 59.930 40.741 18.03 5.62 41.55 1.89
1792 2329 6.379133 CCATGGTGAGGTACTGTTACTAGTAA 59.621 42.308 11.38 11.38 41.55 2.24
1793 2330 5.889853 CCATGGTGAGGTACTGTTACTAGTA 59.110 44.000 2.57 0.00 41.55 1.82
1794 2331 4.710375 CCATGGTGAGGTACTGTTACTAGT 59.290 45.833 2.57 0.00 41.55 2.57
1795 2332 4.954202 TCCATGGTGAGGTACTGTTACTAG 59.046 45.833 12.58 0.00 41.55 2.57
1796 2333 4.938028 TCCATGGTGAGGTACTGTTACTA 58.062 43.478 12.58 0.00 41.55 1.82
1797 2334 3.786553 TCCATGGTGAGGTACTGTTACT 58.213 45.455 12.58 0.00 41.55 2.24
1798 2335 4.755266 ATCCATGGTGAGGTACTGTTAC 57.245 45.455 12.58 0.00 41.55 2.50
1799 2336 5.496556 CAAATCCATGGTGAGGTACTGTTA 58.503 41.667 12.58 0.00 41.55 2.41
1800 2337 4.335416 CAAATCCATGGTGAGGTACTGTT 58.665 43.478 12.58 0.00 41.55 3.16
1801 2338 3.308402 CCAAATCCATGGTGAGGTACTGT 60.308 47.826 12.58 0.00 35.25 3.55
1802 2339 3.282021 CCAAATCCATGGTGAGGTACTG 58.718 50.000 12.58 0.00 35.25 2.74
1803 2340 3.652057 CCAAATCCATGGTGAGGTACT 57.348 47.619 12.58 0.00 37.19 2.73
1851 2388 3.197549 TGCATGGTGAGATACAGTTGCTA 59.802 43.478 0.00 0.00 33.14 3.49
1872 2409 6.256321 GCTGCAAAGTTATTACCAAATCCATG 59.744 38.462 0.00 0.00 0.00 3.66
1892 2429 2.203195 GCGGATATGGGTGCTGCA 60.203 61.111 0.00 0.00 0.00 4.41
1986 2523 4.293494 TCTGATTGAAGGAGAGGTAGCAT 58.707 43.478 0.00 0.00 0.00 3.79
2030 2567 0.038166 TTGTGCACCATTCTCCTCCC 59.962 55.000 15.69 0.00 0.00 4.30
2054 2591 1.684142 TGCGCAAACATGTTCATTCG 58.316 45.000 8.16 13.21 0.00 3.34
2076 2613 3.878778 CTCCTCACTTGGAACATAAGGG 58.121 50.000 0.00 0.00 39.30 3.95
2106 2643 2.203337 GGCTGTGGGAAGTGCACA 60.203 61.111 21.04 0.00 0.00 4.57
2119 2656 0.883833 CTGCTGTAACCCTTTGGCTG 59.116 55.000 0.00 0.00 33.59 4.85
2165 2702 6.424812 GGATGCCATGCCAATAAAGATTTTAC 59.575 38.462 0.00 0.00 0.00 2.01
2170 2707 2.901839 GGGATGCCATGCCAATAAAGAT 59.098 45.455 10.75 0.00 40.99 2.40
2208 2745 2.348218 CCGCTACACGTGTCAGAAAAAC 60.348 50.000 27.16 0.33 41.42 2.43
2221 2758 3.022607 AGAAGTACAACACCGCTACAC 57.977 47.619 0.00 0.00 0.00 2.90
2274 2811 0.865769 ACACGATCACAAAGAACCGC 59.134 50.000 0.00 0.00 0.00 5.68
2545 3082 8.826710 CGAAGAAATGCTGAACCTACAAATATA 58.173 33.333 0.00 0.00 0.00 0.86
2553 3090 3.695830 ACCGAAGAAATGCTGAACCTA 57.304 42.857 0.00 0.00 0.00 3.08
2610 3167 3.490348 AGGCACAGCTTCAAAGTGTAAT 58.510 40.909 3.40 0.00 35.75 1.89
2611 3168 2.930950 AGGCACAGCTTCAAAGTGTAA 58.069 42.857 3.40 0.00 35.75 2.41
2672 3229 8.223330 ACCAATTTGCTCTCCATATTTCTATCT 58.777 33.333 0.00 0.00 0.00 1.98
2694 3251 4.922206 AGCAAACCAGATCATAAGACCAA 58.078 39.130 0.00 0.00 0.00 3.67
2831 3388 6.381707 ACCAACCTGGCTTTTAGAAAAGTTAA 59.618 34.615 14.53 2.61 45.48 2.01
2832 3389 5.894964 ACCAACCTGGCTTTTAGAAAAGTTA 59.105 36.000 14.53 5.23 45.48 2.24
2900 3457 7.660030 AGGCATAAGGTTGTTAATGCTAATT 57.340 32.000 6.16 0.00 35.57 1.40
2974 3532 3.057104 GGTCCATAAAACCCTGGAAAACG 60.057 47.826 0.00 0.00 42.99 3.60
3068 3626 2.099921 ACACAGAGATAAGCCTGCGTAG 59.900 50.000 0.00 0.00 33.90 3.51
3148 3706 2.033550 CGATACCTCTTCTTCCGAGTGG 59.966 54.545 0.00 0.00 34.70 4.00
3201 3759 2.565841 GGAACAGAGCAAAGTCACTGT 58.434 47.619 0.00 0.00 43.92 3.55
3281 3839 3.126000 CAGCAAAGAGGTAGTTTAGCTGC 59.874 47.826 0.00 0.00 41.22 5.25
3362 3920 8.524870 TTCTTAAATGCAAAAGCAGAAGATTC 57.475 30.769 10.85 0.00 0.00 2.52
3406 3964 7.236225 TCATTCTGCTCCTTCCAGATATTATCA 59.764 37.037 6.46 0.00 38.95 2.15
3431 3989 6.033341 TCAGTGTGCACAGTTTTAACATTTC 58.967 36.000 24.56 5.80 0.00 2.17
3460 4018 5.505780 TGGTTGTTCAAAAGAGAGAGGAAA 58.494 37.500 0.00 0.00 0.00 3.13
3524 4082 2.290450 TGATCAGATGAAAGCACTGGCA 60.290 45.455 0.00 0.00 44.61 4.92
3525 4083 2.355132 CTGATCAGATGAAAGCACTGGC 59.645 50.000 18.34 0.00 41.61 4.85
3526 4084 3.607741 ACTGATCAGATGAAAGCACTGG 58.392 45.455 29.27 0.00 33.19 4.00
3527 4085 4.505808 AGACTGATCAGATGAAAGCACTG 58.494 43.478 29.27 0.00 0.00 3.66
3674 4232 1.815421 GAGGATCATGCGCCGTGTT 60.815 57.895 4.18 0.00 33.17 3.32
3728 4286 6.814631 AGGGCATCCAAATGAGTTCTACTCA 61.815 44.000 11.53 11.53 46.62 3.41
3753 4311 6.163159 ACCGTAATCTATCGATACTTCGTC 57.837 41.667 0.00 0.00 45.65 4.20
3790 4348 0.312416 ACACACAGAGACAGAGACGC 59.688 55.000 0.00 0.00 0.00 5.19
3930 4488 0.888619 CTGTCCCGTTGAGTCTGCTA 59.111 55.000 0.00 0.00 0.00 3.49
3997 4555 6.373005 TCTTGAACCTACATCAGAATTCCA 57.627 37.500 0.65 0.00 0.00 3.53
4044 4654 2.900546 AGACTTTCACTACTCTGTGGGG 59.099 50.000 0.00 0.00 38.40 4.96
4045 4655 3.322254 ACAGACTTTCACTACTCTGTGGG 59.678 47.826 0.00 0.00 41.44 4.61
4143 4753 6.469782 ACAGTTTGCCCTATTATTTCCATG 57.530 37.500 0.00 0.00 0.00 3.66
4174 4785 6.292381 GCTGAAAATATGTTGACGTAGCCTAG 60.292 42.308 0.00 0.00 0.00 3.02
4182 4793 3.740044 ACGGCTGAAAATATGTTGACG 57.260 42.857 0.00 0.00 0.00 4.35
4297 4910 7.007725 CAGATTTGCACGTAGAAAGCATAAAAG 59.992 37.037 8.80 0.00 38.19 2.27
4314 4927 2.741759 TCGTAGCTCACAGATTTGCA 57.258 45.000 0.00 0.00 0.00 4.08
4315 4928 2.996621 ACTTCGTAGCTCACAGATTTGC 59.003 45.455 0.00 0.00 0.00 3.68
4379 4992 9.545105 GTATGCATTATCCAAATTTGAATCCAA 57.455 29.630 19.86 6.46 0.00 3.53
4380 4993 8.926374 AGTATGCATTATCCAAATTTGAATCCA 58.074 29.630 19.86 8.26 0.00 3.41
4391 5004 9.585369 TGAATCCAAATAGTATGCATTATCCAA 57.415 29.630 3.54 0.00 0.00 3.53
4392 5005 9.585369 TTGAATCCAAATAGTATGCATTATCCA 57.415 29.630 3.54 0.00 0.00 3.41
4429 5042 9.959749 GTTTCCAATAACTCTTTTCAATGTGTA 57.040 29.630 0.00 0.00 0.00 2.90
4430 5043 8.474025 TGTTTCCAATAACTCTTTTCAATGTGT 58.526 29.630 0.00 0.00 0.00 3.72
4431 5044 8.870160 TGTTTCCAATAACTCTTTTCAATGTG 57.130 30.769 0.00 0.00 0.00 3.21
4432 5045 9.883142 TTTGTTTCCAATAACTCTTTTCAATGT 57.117 25.926 0.00 0.00 0.00 2.71
4494 5109 2.869801 GCAAACTTGGGCTTAAAACCAC 59.130 45.455 0.00 0.00 36.27 4.16
4512 5127 2.127839 TTTTTGCGGGTGATGGCAA 58.872 47.368 0.00 0.00 46.52 4.52
4532 5147 8.751302 TTTGGTAAGACAAACTTGTTCTTTTC 57.249 30.769 10.46 6.75 42.43 2.29
4537 5152 8.161699 TCCTATTTGGTAAGACAAACTTGTTC 57.838 34.615 0.00 0.00 42.51 3.18
4632 5259 3.568538 CTGACAACTAAAACTGCCATGC 58.431 45.455 0.00 0.00 0.00 4.06
4633 5260 3.820467 TCCTGACAACTAAAACTGCCATG 59.180 43.478 0.00 0.00 0.00 3.66
4637 5270 4.095782 TGTGTTCCTGACAACTAAAACTGC 59.904 41.667 0.00 0.00 40.65 4.40
4638 5271 5.811399 TGTGTTCCTGACAACTAAAACTG 57.189 39.130 0.00 0.00 40.65 3.16
4650 5283 2.371841 ACTAACTGCCATGTGTTCCTGA 59.628 45.455 0.00 0.00 0.00 3.86
4651 5284 2.783135 ACTAACTGCCATGTGTTCCTG 58.217 47.619 0.00 0.00 0.00 3.86
4654 5287 6.313744 ACTAAAACTAACTGCCATGTGTTC 57.686 37.500 0.00 0.00 0.00 3.18
4657 5290 5.914635 CACAACTAAAACTAACTGCCATGTG 59.085 40.000 0.00 0.00 0.00 3.21
4658 5291 5.825679 TCACAACTAAAACTAACTGCCATGT 59.174 36.000 0.00 0.00 0.00 3.21
4659 5292 6.312399 TCACAACTAAAACTAACTGCCATG 57.688 37.500 0.00 0.00 0.00 3.66
4660 5293 5.473504 CCTCACAACTAAAACTAACTGCCAT 59.526 40.000 0.00 0.00 0.00 4.40
4661 5294 4.819630 CCTCACAACTAAAACTAACTGCCA 59.180 41.667 0.00 0.00 0.00 4.92
4662 5295 5.061179 TCCTCACAACTAAAACTAACTGCC 58.939 41.667 0.00 0.00 0.00 4.85
4663 5296 6.613755 TTCCTCACAACTAAAACTAACTGC 57.386 37.500 0.00 0.00 0.00 4.40
4664 5297 8.433421 TCTTTCCTCACAACTAAAACTAACTG 57.567 34.615 0.00 0.00 0.00 3.16
4665 5298 9.274206 GATCTTTCCTCACAACTAAAACTAACT 57.726 33.333 0.00 0.00 0.00 2.24
4667 5300 9.621629 TTGATCTTTCCTCACAACTAAAACTAA 57.378 29.630 0.00 0.00 0.00 2.24
4668 5301 9.621629 TTTGATCTTTCCTCACAACTAAAACTA 57.378 29.630 0.00 0.00 0.00 2.24
4684 5348 3.626028 ACTGCCGTTGTTTGATCTTTC 57.374 42.857 0.00 0.00 0.00 2.62
4696 5360 6.024664 GCATTTTTGTTTTAAAACTGCCGTT 58.975 32.000 26.76 9.12 39.59 4.44
4698 5362 4.966970 GGCATTTTTGTTTTAAAACTGCCG 59.033 37.500 29.93 17.21 39.25 5.69
4716 5383 9.247861 AGTTTATGTTTCTTCATAGAAGGCATT 57.752 29.630 6.89 0.00 41.25 3.56
4758 5425 1.133199 TGTGAGGGGATGGCAGTTTTT 60.133 47.619 0.00 0.00 0.00 1.94
4759 5426 0.482446 TGTGAGGGGATGGCAGTTTT 59.518 50.000 0.00 0.00 0.00 2.43
4760 5427 0.482446 TTGTGAGGGGATGGCAGTTT 59.518 50.000 0.00 0.00 0.00 2.66
4761 5428 0.251341 GTTGTGAGGGGATGGCAGTT 60.251 55.000 0.00 0.00 0.00 3.16
4762 5429 1.136329 AGTTGTGAGGGGATGGCAGT 61.136 55.000 0.00 0.00 0.00 4.40
4763 5430 0.679002 CAGTTGTGAGGGGATGGCAG 60.679 60.000 0.00 0.00 0.00 4.85
4764 5431 1.133181 TCAGTTGTGAGGGGATGGCA 61.133 55.000 0.00 0.00 0.00 4.92
4765 5432 0.038166 TTCAGTTGTGAGGGGATGGC 59.962 55.000 0.00 0.00 32.98 4.40
4766 5433 2.584835 TTTCAGTTGTGAGGGGATGG 57.415 50.000 0.00 0.00 32.98 3.51
4767 5434 3.367703 GCATTTTCAGTTGTGAGGGGATG 60.368 47.826 0.00 0.00 32.98 3.51
4768 5435 2.827921 GCATTTTCAGTTGTGAGGGGAT 59.172 45.455 0.00 0.00 32.98 3.85
4769 5436 2.238521 GCATTTTCAGTTGTGAGGGGA 58.761 47.619 0.00 0.00 32.98 4.81
4770 5437 1.273327 GGCATTTTCAGTTGTGAGGGG 59.727 52.381 0.00 0.00 32.98 4.79
4771 5438 1.962807 TGGCATTTTCAGTTGTGAGGG 59.037 47.619 0.00 0.00 32.98 4.30
4776 5443 6.402222 TGTTTTAGTTGGCATTTTCAGTTGT 58.598 32.000 0.00 0.00 0.00 3.32
4782 5449 5.176590 TGCGAATGTTTTAGTTGGCATTTTC 59.823 36.000 0.00 0.00 34.78 2.29
4789 5456 4.143137 GGCATTTGCGAATGTTTTAGTTGG 60.143 41.667 24.39 0.00 43.67 3.77
4792 5459 3.987220 GTGGCATTTGCGAATGTTTTAGT 59.013 39.130 24.39 0.00 43.67 2.24
4814 5481 0.515564 CCTGTTTAACTGGCGAACGG 59.484 55.000 8.04 0.00 30.42 4.44
4816 5483 1.534163 GACCCTGTTTAACTGGCGAAC 59.466 52.381 14.42 3.33 36.06 3.95
4818 5485 0.035739 GGACCCTGTTTAACTGGCGA 59.964 55.000 14.42 0.00 36.06 5.54
4820 5487 2.287977 AAGGACCCTGTTTAACTGGC 57.712 50.000 14.42 3.35 36.06 4.85
4821 5488 3.009143 AGCTAAGGACCCTGTTTAACTGG 59.991 47.826 13.15 13.15 37.01 4.00
4822 5489 4.287766 AGCTAAGGACCCTGTTTAACTG 57.712 45.455 0.00 0.00 0.00 3.16
4823 5490 4.995624 AAGCTAAGGACCCTGTTTAACT 57.004 40.909 0.00 0.00 0.00 2.24
4827 6487 3.230976 CCAAAAGCTAAGGACCCTGTTT 58.769 45.455 0.00 0.00 0.00 2.83
4877 6537 8.183830 TCTTTGTGCACTTTAGTTCATTTTTG 57.816 30.769 19.41 0.00 0.00 2.44
4923 6583 4.381932 GCCCTACCAAATTTTGAGTCATGG 60.382 45.833 10.72 7.96 0.00 3.66
4946 6606 1.362355 GGACGGTGGCCAAAGTTTG 59.638 57.895 7.24 8.73 0.00 2.93
4961 6621 0.746659 ACTGGCAGCTTTGTTTGGAC 59.253 50.000 15.89 0.00 0.00 4.02
5083 6743 6.012745 ACAAGGATTTTGCAGGAGTTAATCT 58.987 36.000 0.00 0.00 0.00 2.40
5190 6851 4.082571 GGGTCAAAGATTGTGTGATCCAAG 60.083 45.833 0.00 0.00 41.45 3.61
5191 6852 3.826157 GGGTCAAAGATTGTGTGATCCAA 59.174 43.478 0.00 0.00 41.45 3.53
5192 6853 3.074390 AGGGTCAAAGATTGTGTGATCCA 59.926 43.478 6.09 0.00 43.82 3.41
5193 6854 3.690460 AGGGTCAAAGATTGTGTGATCC 58.310 45.455 0.00 0.00 42.03 3.36
5194 6855 6.599244 TCAATAGGGTCAAAGATTGTGTGATC 59.401 38.462 0.00 0.00 32.33 2.92
5195 6856 6.375455 GTCAATAGGGTCAAAGATTGTGTGAT 59.625 38.462 0.00 0.00 32.33 3.06
5196 6857 5.705441 GTCAATAGGGTCAAAGATTGTGTGA 59.295 40.000 0.00 0.00 32.33 3.58
5197 6858 5.390885 CGTCAATAGGGTCAAAGATTGTGTG 60.391 44.000 0.00 0.00 32.33 3.82
5198 6859 4.695455 CGTCAATAGGGTCAAAGATTGTGT 59.305 41.667 0.00 0.00 32.33 3.72
5279 6940 1.223211 GAGCAGGGAGGAAAGCTCC 59.777 63.158 0.00 0.00 45.79 4.70
5387 7048 2.279120 GACATCGAGCTGCCCGAG 60.279 66.667 12.62 6.90 39.55 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.