Multiple sequence alignment - TraesCS2D01G144300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G144300 chr2D 100.000 3236 0 0 1 3236 85759823 85756588 0.000000e+00 5976.0
1 TraesCS2D01G144300 chr2D 88.506 261 26 3 2743 3003 337373347 337373091 2.420000e-81 313.0
2 TraesCS2D01G144300 chr2D 87.097 279 27 4 2742 3011 186284567 186284289 1.130000e-79 307.0
3 TraesCS2D01G144300 chr2D 93.878 49 1 2 3190 3236 175607561 175607513 4.480000e-09 73.1
4 TraesCS2D01G144300 chr2D 90.909 55 3 2 3184 3236 513099672 513099726 4.480000e-09 73.1
5 TraesCS2D01G144300 chr2A 93.399 2030 98 17 685 2689 86271954 86269936 0.000000e+00 2974.0
6 TraesCS2D01G144300 chr2A 96.324 136 5 0 643 778 86273033 86272898 1.170000e-54 224.0
7 TraesCS2D01G144300 chr2A 96.212 132 5 0 647 778 86273986 86273855 1.960000e-52 217.0
8 TraesCS2D01G144300 chr2A 89.143 175 10 3 647 812 86272052 86271878 3.270000e-50 209.0
9 TraesCS2D01G144300 chr2A 84.375 128 18 1 128 253 14449370 14449243 1.220000e-24 124.0
10 TraesCS2D01G144300 chr2A 95.833 48 1 1 3190 3236 764330399 764330446 3.460000e-10 76.8
11 TraesCS2D01G144300 chr2B 93.287 2011 86 17 745 2736 137856647 137854667 0.000000e+00 2920.0
12 TraesCS2D01G144300 chr2B 92.523 107 8 0 3087 3193 137854352 137854246 1.550000e-33 154.0
13 TraesCS2D01G144300 chr2B 92.523 107 6 2 647 751 137856686 137856580 5.590000e-33 152.0
14 TraesCS2D01G144300 chr3B 87.715 2035 171 38 745 2743 167864005 167862014 0.000000e+00 2300.0
15 TraesCS2D01G144300 chr3B 92.553 188 10 2 3007 3193 167862018 167861834 1.910000e-67 267.0
16 TraesCS2D01G144300 chr3B 88.889 90 9 1 649 737 167864041 167863952 3.410000e-20 110.0
17 TraesCS2D01G144300 chr3D 86.550 2052 151 44 745 2743 112960640 112962619 0.000000e+00 2145.0
18 TraesCS2D01G144300 chr3D 86.979 192 11 4 3007 3193 112962615 112962797 1.520000e-48 204.0
19 TraesCS2D01G144300 chr3A 82.993 1911 161 63 752 2589 108729491 108731310 0.000000e+00 1578.0
20 TraesCS2D01G144300 chr3A 89.299 271 25 3 2740 3010 732740919 732740653 1.440000e-88 337.0
21 TraesCS2D01G144300 chr3A 83.478 115 7 6 3090 3193 108731945 108732058 2.660000e-16 97.1
22 TraesCS2D01G144300 chr5D 96.353 658 14 3 1 648 515105373 515104716 0.000000e+00 1074.0
23 TraesCS2D01G144300 chr5D 96.177 654 17 1 1 646 50817591 50816938 0.000000e+00 1062.0
24 TraesCS2D01G144300 chr5D 95.745 47 1 1 3191 3236 561619827 561619873 1.250000e-09 75.0
25 TraesCS2D01G144300 chr1B 85.352 355 28 7 1 353 399001344 399001676 2.390000e-91 346.0
26 TraesCS2D01G144300 chr1B 88.000 275 24 1 2742 3007 470484049 470484323 1.870000e-82 316.0
27 TraesCS2D01G144300 chr1D 88.603 272 26 2 2740 3007 334469080 334469350 3.110000e-85 326.0
28 TraesCS2D01G144300 chr1D 95.652 46 2 0 3191 3236 221298603 221298648 1.250000e-09 75.0
29 TraesCS2D01G144300 chr4B 88.087 277 24 2 2740 3007 148062325 148062601 1.450000e-83 320.0
30 TraesCS2D01G144300 chr5A 88.550 262 26 3 2742 3003 454709171 454709428 6.740000e-82 315.0
31 TraesCS2D01G144300 chr4D 87.868 272 27 4 2742 3007 235277531 235277260 6.740000e-82 315.0
32 TraesCS2D01G144300 chr4D 83.000 300 44 5 39 333 477025173 477025470 6.880000e-67 265.0
33 TraesCS2D01G144300 chr7D 87.319 276 28 5 2740 3014 608864756 608864487 3.140000e-80 309.0
34 TraesCS2D01G144300 chr5B 83.113 302 45 5 37 333 555955954 555955654 1.480000e-68 270.0
35 TraesCS2D01G144300 chr5B 94.000 50 1 2 3189 3236 657404056 657404007 1.250000e-09 75.0
36 TraesCS2D01G144300 chr6A 83.803 284 39 5 39 318 224249489 224249209 2.480000e-66 263.0
37 TraesCS2D01G144300 chr6A 95.833 48 1 1 3190 3236 536912381 536912334 3.460000e-10 76.8
38 TraesCS2D01G144300 chr7A 83.392 283 42 3 39 318 686230932 686231212 1.150000e-64 257.0
39 TraesCS2D01G144300 chr7A 95.833 48 1 1 3190 3236 12074754 12074801 3.460000e-10 76.8
40 TraesCS2D01G144300 chr1A 81.126 302 46 8 39 333 360402766 360403063 6.980000e-57 231.0
41 TraesCS2D01G144300 chr1A 95.745 47 1 1 3191 3236 12375235 12375189 1.250000e-09 75.0
42 TraesCS2D01G144300 chr6B 90.909 143 12 1 211 353 642383877 642383736 1.180000e-44 191.0
43 TraesCS2D01G144300 chr6B 86.826 167 14 7 6 170 642383995 642383835 2.570000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G144300 chr2D 85756588 85759823 3235 True 5976.000000 5976 100.000000 1 3236 1 chr2D.!!$R1 3235
1 TraesCS2D01G144300 chr2A 86269936 86273986 4050 True 906.000000 2974 93.769500 643 2689 4 chr2A.!!$R2 2046
2 TraesCS2D01G144300 chr2B 137854246 137856686 2440 True 1075.333333 2920 92.777667 647 3193 3 chr2B.!!$R1 2546
3 TraesCS2D01G144300 chr3B 167861834 167864041 2207 True 892.333333 2300 89.719000 649 3193 3 chr3B.!!$R1 2544
4 TraesCS2D01G144300 chr3D 112960640 112962797 2157 False 1174.500000 2145 86.764500 745 3193 2 chr3D.!!$F1 2448
5 TraesCS2D01G144300 chr3A 108729491 108732058 2567 False 837.550000 1578 83.235500 752 3193 2 chr3A.!!$F1 2441
6 TraesCS2D01G144300 chr5D 515104716 515105373 657 True 1074.000000 1074 96.353000 1 648 1 chr5D.!!$R2 647
7 TraesCS2D01G144300 chr5D 50816938 50817591 653 True 1062.000000 1062 96.177000 1 646 1 chr5D.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 2178 1.181786 GGATTCGCCCATTGTTTCCA 58.818 50.0 0.0 0.0 0.00 3.53 F
2058 3488 0.439985 CCTCTGTGCGTGAACGAATG 59.560 55.0 7.1 0.0 43.02 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 3556 0.036010 GTTCCTAAGGCTCTGCTGCA 60.036 55.0 0.88 0.88 34.04 4.41 R
3004 4604 0.169672 CCTTGCATGTTCGCTTCAGG 59.830 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.017049 GCGATGCTTCATTGTAACCCT 58.983 47.619 0.08 0.00 0.00 4.34
121 122 4.375569 GTGCTTCACTGCAGCTCT 57.624 55.556 15.27 0.00 44.20 4.09
229 230 3.982316 CTCCATTGCAGCTCCGCCA 62.982 63.158 0.00 0.00 0.00 5.69
324 325 2.126618 CGCAGCACCGAGTTCGTA 60.127 61.111 0.48 0.00 37.74 3.43
566 577 3.060020 GCAGACGCGGTAGTAGGCA 62.060 63.158 12.47 0.00 0.00 4.75
723 1036 1.668151 GTGTCGAGCTTCACCCCAC 60.668 63.158 0.00 0.00 0.00 4.61
734 2024 1.682005 CACCCCACGCCATCCATTT 60.682 57.895 0.00 0.00 0.00 2.32
817 2178 1.181786 GGATTCGCCCATTGTTTCCA 58.818 50.000 0.00 0.00 0.00 3.53
1284 2660 1.138883 CATCGCCTTCCTCGACGAA 59.861 57.895 0.00 0.00 38.88 3.85
1296 2672 2.870372 GACGAAAGCAATGCCGCT 59.130 55.556 0.00 0.00 46.67 5.52
1769 3168 1.667154 GATTTCCCCGCCTCCAAAGC 61.667 60.000 0.00 0.00 0.00 3.51
1796 3197 2.289694 ACTCCGTGAATTTGACCTGGAG 60.290 50.000 0.00 7.90 45.45 3.86
2018 3444 1.405105 CCGAATGCCGAAACAATCCAT 59.595 47.619 0.00 0.00 41.76 3.41
2036 3466 5.333299 TCCATCGCTTTGCTAACTAACTA 57.667 39.130 0.00 0.00 0.00 2.24
2037 3467 5.726397 TCCATCGCTTTGCTAACTAACTAA 58.274 37.500 0.00 0.00 0.00 2.24
2038 3468 5.579511 TCCATCGCTTTGCTAACTAACTAAC 59.420 40.000 0.00 0.00 0.00 2.34
2039 3469 5.220605 CCATCGCTTTGCTAACTAACTAACC 60.221 44.000 0.00 0.00 0.00 2.85
2058 3488 0.439985 CCTCTGTGCGTGAACGAATG 59.560 55.000 7.10 0.00 43.02 2.67
2106 3536 4.357325 AGGCACTGAAGAAGGAGATAGAA 58.643 43.478 0.00 0.00 37.18 2.10
2126 3556 1.589414 AGGCTGAGGCAAATCTACCT 58.411 50.000 9.23 0.00 40.87 3.08
2158 3591 1.322538 TAGGAACGTAGAACCCCCGC 61.323 60.000 0.00 0.00 0.00 6.13
2367 3851 4.134563 GGGGTGTGATGATGTATGTAACC 58.865 47.826 0.00 0.00 0.00 2.85
2452 3940 7.366226 TCCTGATTATTCTTCTCTACTTCCCT 58.634 38.462 0.00 0.00 0.00 4.20
2560 4053 0.597377 GCTTGGCGGGTTTTGTTCTG 60.597 55.000 0.00 0.00 0.00 3.02
2589 4087 6.053650 TGGTCAATCAAATGCAATGTTTTCA 58.946 32.000 0.00 0.00 0.00 2.69
2667 4257 4.939509 AACATGTAAGGTTCATGCGTAC 57.060 40.909 0.00 0.00 34.75 3.67
2670 4266 3.029320 TGTAAGGTTCATGCGTACGTT 57.971 42.857 17.90 1.76 0.00 3.99
2677 4273 2.508439 ATGCGTACGTTCCTGCCG 60.508 61.111 17.90 0.00 0.00 5.69
2689 4285 0.037590 TCCTGCCGGCTTTACATTGT 59.962 50.000 29.70 0.00 0.00 2.71
2717 4317 5.064707 GCAGATTTATTACGGTGTCACATGT 59.935 40.000 5.12 5.37 0.00 3.21
2733 4333 0.911769 ATGTAGGGCAGCTGCAACTA 59.088 50.000 37.63 32.25 44.36 2.24
2740 4340 1.066858 GGCAGCTGCAACTAGAGTGTA 60.067 52.381 37.63 0.00 44.36 2.90
2742 4342 2.670414 GCAGCTGCAACTAGAGTGTAAG 59.330 50.000 33.36 0.00 41.59 2.34
2745 4345 2.354203 GCTGCAACTAGAGTGTAAGGCT 60.354 50.000 0.00 0.00 0.00 4.58
2746 4346 3.257393 CTGCAACTAGAGTGTAAGGCTG 58.743 50.000 0.00 0.00 0.00 4.85
2747 4347 2.028112 TGCAACTAGAGTGTAAGGCTGG 60.028 50.000 0.00 0.00 0.00 4.85
2748 4348 2.028020 GCAACTAGAGTGTAAGGCTGGT 60.028 50.000 0.00 0.00 0.00 4.00
2749 4349 3.851098 CAACTAGAGTGTAAGGCTGGTC 58.149 50.000 0.00 0.00 0.00 4.02
2750 4350 2.093106 ACTAGAGTGTAAGGCTGGTCG 58.907 52.381 0.00 0.00 0.00 4.79
2751 4351 2.093106 CTAGAGTGTAAGGCTGGTCGT 58.907 52.381 0.00 0.00 0.00 4.34
2752 4352 2.211250 AGAGTGTAAGGCTGGTCGTA 57.789 50.000 0.00 0.00 0.00 3.43
2753 4353 2.522185 AGAGTGTAAGGCTGGTCGTAA 58.478 47.619 0.00 0.00 0.00 3.18
2754 4354 2.230750 AGAGTGTAAGGCTGGTCGTAAC 59.769 50.000 0.00 0.00 0.00 2.50
2755 4355 1.068055 AGTGTAAGGCTGGTCGTAACG 60.068 52.381 0.00 0.00 0.00 3.18
2756 4356 1.068333 GTGTAAGGCTGGTCGTAACGA 60.068 52.381 0.00 0.00 0.00 3.85
2757 4357 1.200716 TGTAAGGCTGGTCGTAACGAG 59.799 52.381 0.00 0.00 36.23 4.18
2758 4358 1.470098 GTAAGGCTGGTCGTAACGAGA 59.530 52.381 0.00 0.00 36.23 4.04
2759 4359 0.526662 AAGGCTGGTCGTAACGAGAG 59.473 55.000 0.00 0.00 36.23 3.20
2776 4376 6.149129 ACGAGAGTATCATAAACAGCATCA 57.851 37.500 0.00 0.00 46.88 3.07
2777 4377 6.753180 ACGAGAGTATCATAAACAGCATCAT 58.247 36.000 0.00 0.00 46.88 2.45
2778 4378 6.644181 ACGAGAGTATCATAAACAGCATCATG 59.356 38.462 0.00 0.00 46.88 3.07
2779 4379 6.400834 CGAGAGTATCATAAACAGCATCATGC 60.401 42.308 0.00 0.00 40.48 4.06
2780 4380 6.293698 AGAGTATCATAAACAGCATCATGCA 58.706 36.000 13.38 0.00 42.16 3.96
2781 4381 6.940867 AGAGTATCATAAACAGCATCATGCAT 59.059 34.615 13.38 0.00 42.16 3.96
2782 4382 7.447545 AGAGTATCATAAACAGCATCATGCATT 59.552 33.333 13.38 6.49 42.16 3.56
2783 4383 8.080417 GAGTATCATAAACAGCATCATGCATTT 58.920 33.333 13.38 13.99 40.04 2.32
2827 4427 6.951062 TGTGACACACAATTAAATGAGGAA 57.049 33.333 3.56 0.00 41.69 3.36
2828 4428 7.340122 TGTGACACACAATTAAATGAGGAAA 57.660 32.000 3.56 0.00 41.69 3.13
2829 4429 7.424803 TGTGACACACAATTAAATGAGGAAAG 58.575 34.615 3.56 0.00 41.69 2.62
2830 4430 7.284261 TGTGACACACAATTAAATGAGGAAAGA 59.716 33.333 3.56 0.00 41.69 2.52
2831 4431 7.805071 GTGACACACAATTAAATGAGGAAAGAG 59.195 37.037 0.00 0.00 34.08 2.85
2832 4432 7.040478 TGACACACAATTAAATGAGGAAAGAGG 60.040 37.037 0.00 0.00 0.00 3.69
2833 4433 6.209391 ACACACAATTAAATGAGGAAAGAGGG 59.791 38.462 0.00 0.00 0.00 4.30
2834 4434 5.716703 ACACAATTAAATGAGGAAAGAGGGG 59.283 40.000 0.00 0.00 0.00 4.79
2835 4435 5.127682 CACAATTAAATGAGGAAAGAGGGGG 59.872 44.000 0.00 0.00 0.00 5.40
2836 4436 5.222547 ACAATTAAATGAGGAAAGAGGGGGT 60.223 40.000 0.00 0.00 0.00 4.95
2837 4437 2.907458 AAATGAGGAAAGAGGGGGTG 57.093 50.000 0.00 0.00 0.00 4.61
2838 4438 1.760405 AATGAGGAAAGAGGGGGTGT 58.240 50.000 0.00 0.00 0.00 4.16
2839 4439 0.995024 ATGAGGAAAGAGGGGGTGTG 59.005 55.000 0.00 0.00 0.00 3.82
2840 4440 1.133809 TGAGGAAAGAGGGGGTGTGG 61.134 60.000 0.00 0.00 0.00 4.17
2841 4441 1.072930 AGGAAAGAGGGGGTGTGGT 60.073 57.895 0.00 0.00 0.00 4.16
2842 4442 0.195096 AGGAAAGAGGGGGTGTGGTA 59.805 55.000 0.00 0.00 0.00 3.25
2843 4443 1.203570 AGGAAAGAGGGGGTGTGGTAT 60.204 52.381 0.00 0.00 0.00 2.73
2844 4444 1.212195 GGAAAGAGGGGGTGTGGTATC 59.788 57.143 0.00 0.00 0.00 2.24
2845 4445 1.913419 GAAAGAGGGGGTGTGGTATCA 59.087 52.381 0.00 0.00 0.00 2.15
2846 4446 2.286935 AAGAGGGGGTGTGGTATCAT 57.713 50.000 0.00 0.00 0.00 2.45
2847 4447 3.431411 AAGAGGGGGTGTGGTATCATA 57.569 47.619 0.00 0.00 0.00 2.15
2848 4448 3.655972 AGAGGGGGTGTGGTATCATAT 57.344 47.619 0.00 0.00 0.00 1.78
2849 4449 3.521727 AGAGGGGGTGTGGTATCATATC 58.478 50.000 0.00 0.00 0.00 1.63
2850 4450 3.116356 AGAGGGGGTGTGGTATCATATCA 60.116 47.826 0.00 0.00 0.00 2.15
2851 4451 3.846588 GAGGGGGTGTGGTATCATATCAT 59.153 47.826 0.00 0.00 0.00 2.45
2852 4452 3.588842 AGGGGGTGTGGTATCATATCATG 59.411 47.826 0.00 0.00 0.00 3.07
2853 4453 3.587061 GGGGGTGTGGTATCATATCATGA 59.413 47.826 0.00 0.00 44.55 3.07
2893 4493 5.666969 TGTTGTACTACTTTGTGTCATGC 57.333 39.130 8.88 0.00 0.00 4.06
2894 4494 5.119694 TGTTGTACTACTTTGTGTCATGCA 58.880 37.500 8.88 0.00 0.00 3.96
2895 4495 5.762711 TGTTGTACTACTTTGTGTCATGCAT 59.237 36.000 8.88 0.00 0.00 3.96
2896 4496 5.861222 TGTACTACTTTGTGTCATGCATG 57.139 39.130 21.07 21.07 0.00 4.06
2897 4497 5.546526 TGTACTACTTTGTGTCATGCATGA 58.453 37.500 25.42 25.42 0.00 3.07
2914 4514 9.571810 TCATGCATGACAATTAATAAGACAAAC 57.428 29.630 25.42 0.00 0.00 2.93
2915 4515 9.577110 CATGCATGACAATTAATAAGACAAACT 57.423 29.630 22.59 0.00 0.00 2.66
2947 4547 8.512956 ACTAACTTATGATACTATGCACTACGG 58.487 37.037 0.00 0.00 0.00 4.02
2948 4548 7.520451 AACTTATGATACTATGCACTACGGA 57.480 36.000 0.00 0.00 0.00 4.69
2949 4549 7.704578 ACTTATGATACTATGCACTACGGAT 57.295 36.000 0.00 0.00 0.00 4.18
2950 4550 7.539436 ACTTATGATACTATGCACTACGGATG 58.461 38.462 0.00 0.00 0.00 3.51
2951 4551 5.984695 ATGATACTATGCACTACGGATGT 57.015 39.130 0.00 0.00 0.00 3.06
2952 4552 8.570068 TTATGATACTATGCACTACGGATGTA 57.430 34.615 0.00 0.00 0.00 2.29
3001 4601 8.147244 AGTATATGATACTCCCCATTACAACC 57.853 38.462 0.00 0.00 0.00 3.77
3002 4602 7.737607 AGTATATGATACTCCCCATTACAACCA 59.262 37.037 0.00 0.00 0.00 3.67
3003 4603 4.771114 TGATACTCCCCATTACAACCAG 57.229 45.455 0.00 0.00 0.00 4.00
3004 4604 3.118038 TGATACTCCCCATTACAACCAGC 60.118 47.826 0.00 0.00 0.00 4.85
3005 4605 0.331616 ACTCCCCATTACAACCAGCC 59.668 55.000 0.00 0.00 0.00 4.85
3024 4634 0.877071 CTGAAGCGAACATGCAAGGT 59.123 50.000 0.00 0.00 37.31 3.50
3026 4636 0.109597 GAAGCGAACATGCAAGGTGG 60.110 55.000 0.00 0.00 37.31 4.61
3027 4637 0.537143 AAGCGAACATGCAAGGTGGA 60.537 50.000 0.00 0.00 37.31 4.02
3120 5309 2.802719 TCCTTTTGGTGCAAGGGATAC 58.197 47.619 1.57 0.00 41.25 2.24
3179 5373 1.748493 GGTTGTACCCGTACGTATCCA 59.252 52.381 15.21 2.74 38.85 3.41
3193 5387 2.277084 GTATCCACCGGTGCAAGTTAG 58.723 52.381 29.75 13.63 0.00 2.34
3194 5388 0.981183 ATCCACCGGTGCAAGTTAGA 59.019 50.000 29.75 18.65 0.00 2.10
3195 5389 0.320374 TCCACCGGTGCAAGTTAGAG 59.680 55.000 29.75 12.09 0.00 2.43
3196 5390 1.298859 CCACCGGTGCAAGTTAGAGC 61.299 60.000 29.75 0.00 0.00 4.09
3197 5391 0.602638 CACCGGTGCAAGTTAGAGCA 60.603 55.000 24.02 0.00 38.65 4.26
3198 5392 0.324943 ACCGGTGCAAGTTAGAGCAT 59.675 50.000 6.12 0.00 43.44 3.79
3199 5393 1.009829 CCGGTGCAAGTTAGAGCATC 58.990 55.000 0.00 0.00 43.44 3.91
3210 5404 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
3211 5405 1.219124 GAGCATCTCCAGCCGTTGA 59.781 57.895 0.00 0.00 0.00 3.18
3212 5406 0.809241 GAGCATCTCCAGCCGTTGAG 60.809 60.000 0.00 0.00 0.00 3.02
3213 5407 2.467826 GCATCTCCAGCCGTTGAGC 61.468 63.158 0.00 0.00 0.00 4.26
3214 5408 1.817099 CATCTCCAGCCGTTGAGCC 60.817 63.158 0.00 0.00 0.00 4.70
3215 5409 3.036429 ATCTCCAGCCGTTGAGCCC 62.036 63.158 0.00 0.00 0.00 5.19
3216 5410 4.785453 CTCCAGCCGTTGAGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
3222 5416 3.646715 CCGTTGAGCCCCCAGGAA 61.647 66.667 0.00 0.00 33.47 3.36
3223 5417 2.045926 CGTTGAGCCCCCAGGAAG 60.046 66.667 0.00 0.00 33.47 3.46
3224 5418 2.361737 GTTGAGCCCCCAGGAAGC 60.362 66.667 0.00 0.00 33.47 3.86
3225 5419 2.858476 TTGAGCCCCCAGGAAGCA 60.858 61.111 3.73 0.00 33.47 3.91
3226 5420 2.240918 TTGAGCCCCCAGGAAGCAT 61.241 57.895 3.73 0.00 33.47 3.79
3227 5421 1.803453 TTGAGCCCCCAGGAAGCATT 61.803 55.000 3.73 0.00 33.47 3.56
3228 5422 1.000866 GAGCCCCCAGGAAGCATTT 59.999 57.895 3.73 0.00 33.47 2.32
3229 5423 0.615827 GAGCCCCCAGGAAGCATTTT 60.616 55.000 3.73 0.00 33.47 1.82
3230 5424 0.178894 AGCCCCCAGGAAGCATTTTT 60.179 50.000 3.73 0.00 33.47 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.009723 CGTCAGGGTTACAATGAAGCAT 58.990 45.455 0.00 0.00 0.00 3.79
121 122 0.107993 AGCTGCAATGAAGCGAGCTA 60.108 50.000 7.70 0.00 45.59 3.32
229 230 2.048503 GTGCTGTAAGTCGCCGGT 60.049 61.111 1.90 0.00 35.30 5.28
473 484 7.224753 CGCCTCTTACATTTTGTATCTACATGT 59.775 37.037 2.69 2.69 35.89 3.21
723 1036 1.406180 TGAATCTGCAAATGGATGGCG 59.594 47.619 0.00 0.00 0.00 5.69
734 2024 0.971959 GGGCAATGGGTGAATCTGCA 60.972 55.000 0.00 0.00 34.66 4.41
855 2216 1.339631 CCAGAAATTGTACGGCCCTCA 60.340 52.381 0.00 0.00 0.00 3.86
1011 2381 3.728373 GTGGGGATCTTGGGCGGT 61.728 66.667 0.00 0.00 0.00 5.68
1296 2672 3.562779 GAACTCGTTCGCCCCGACA 62.563 63.158 0.00 0.00 34.89 4.35
1595 2985 3.492656 CGCTGAGAAATCGGGGAATTCTA 60.493 47.826 5.23 0.00 32.71 2.10
1777 3176 1.974957 TCTCCAGGTCAAATTCACGGA 59.025 47.619 0.00 0.00 0.00 4.69
1846 3255 2.315386 GCGTTGGTGGTCGAGGAAC 61.315 63.158 0.00 0.00 0.00 3.62
1958 3367 2.875087 TCGAAATAAATCGCGAGGGA 57.125 45.000 16.66 1.41 42.44 4.20
1997 3410 0.100503 GGATTGTTTCGGCATTCGGG 59.899 55.000 0.00 0.00 39.77 5.14
2004 3417 0.451783 AAGCGATGGATTGTTTCGGC 59.548 50.000 0.00 0.00 33.62 5.54
2018 3444 4.020839 AGGGTTAGTTAGTTAGCAAAGCGA 60.021 41.667 0.00 0.00 0.00 4.93
2036 3466 1.594293 CGTTCACGCACAGAGGGTT 60.594 57.895 0.00 0.00 42.14 4.11
2037 3467 2.023414 TTCGTTCACGCACAGAGGGT 62.023 55.000 0.00 0.00 45.35 4.34
2038 3468 0.670546 ATTCGTTCACGCACAGAGGG 60.671 55.000 0.00 0.00 39.60 4.30
2039 3469 0.439985 CATTCGTTCACGCACAGAGG 59.560 55.000 0.00 0.00 39.60 3.69
2058 3488 2.051882 GCTGAGCACGCACAACAC 60.052 61.111 0.00 0.00 0.00 3.32
2106 3536 1.918957 AGGTAGATTTGCCTCAGCCTT 59.081 47.619 0.00 0.00 33.69 4.35
2126 3556 0.036010 GTTCCTAAGGCTCTGCTGCA 60.036 55.000 0.88 0.88 34.04 4.41
2158 3591 4.712425 GGGACCGTCGTCGTGTGG 62.712 72.222 0.71 0.00 40.17 4.17
2255 3702 3.190738 TTGGTTGTCCTGAGGCCGG 62.191 63.158 0.00 0.00 34.23 6.13
2256 3703 1.672356 CTTGGTTGTCCTGAGGCCG 60.672 63.158 0.00 0.00 34.23 6.13
2257 3704 0.890996 CACTTGGTTGTCCTGAGGCC 60.891 60.000 0.00 0.00 34.23 5.19
2367 3851 1.269448 CCACCGGAATGAACAAACTGG 59.731 52.381 9.46 0.00 35.21 4.00
2560 4053 5.697633 ACATTGCATTTGATTGACCAGAAAC 59.302 36.000 4.32 0.00 0.00 2.78
2589 4087 3.695830 AATGTATGAACAGTGGACGGT 57.304 42.857 0.00 0.00 39.49 4.83
2622 4121 0.037975 CAAGTTTGGTCATGGCTGCC 60.038 55.000 12.87 12.87 0.00 4.85
2667 4257 1.024579 ATGTAAAGCCGGCAGGAACG 61.025 55.000 31.54 0.00 41.02 3.95
2670 4266 0.037590 ACAATGTAAAGCCGGCAGGA 59.962 50.000 31.54 10.01 41.02 3.86
2677 4273 9.586435 AATAAATCTGCTTAACAATGTAAAGCC 57.414 29.630 4.04 0.00 43.93 4.35
2689 4285 6.874664 TGTGACACCGTAATAAATCTGCTTAA 59.125 34.615 2.45 0.00 0.00 1.85
2717 4317 0.826715 CTCTAGTTGCAGCTGCCCTA 59.173 55.000 34.64 29.01 41.18 3.53
2733 4333 2.211250 TACGACCAGCCTTACACTCT 57.789 50.000 0.00 0.00 0.00 3.24
2740 4340 0.526662 CTCTCGTTACGACCAGCCTT 59.473 55.000 2.33 0.00 0.00 4.35
2742 4342 1.089920 TACTCTCGTTACGACCAGCC 58.910 55.000 2.33 0.00 0.00 4.85
2745 4345 6.093909 TGTTTATGATACTCTCGTTACGACCA 59.906 38.462 2.33 0.00 0.00 4.02
2746 4346 6.489675 TGTTTATGATACTCTCGTTACGACC 58.510 40.000 2.33 0.00 0.00 4.79
2747 4347 6.140422 GCTGTTTATGATACTCTCGTTACGAC 59.860 42.308 2.33 0.00 0.00 4.34
2748 4348 6.183360 TGCTGTTTATGATACTCTCGTTACGA 60.183 38.462 7.39 7.39 0.00 3.43
2749 4349 5.969435 TGCTGTTTATGATACTCTCGTTACG 59.031 40.000 0.00 0.00 0.00 3.18
2750 4350 7.648112 TGATGCTGTTTATGATACTCTCGTTAC 59.352 37.037 0.00 0.00 0.00 2.50
2751 4351 7.712797 TGATGCTGTTTATGATACTCTCGTTA 58.287 34.615 0.00 0.00 0.00 3.18
2752 4352 6.573434 TGATGCTGTTTATGATACTCTCGTT 58.427 36.000 0.00 0.00 0.00 3.85
2753 4353 6.149129 TGATGCTGTTTATGATACTCTCGT 57.851 37.500 0.00 0.00 0.00 4.18
2754 4354 6.400834 GCATGATGCTGTTTATGATACTCTCG 60.401 42.308 10.72 0.00 40.96 4.04
2755 4355 6.426025 TGCATGATGCTGTTTATGATACTCTC 59.574 38.462 19.19 0.00 45.31 3.20
2756 4356 6.293698 TGCATGATGCTGTTTATGATACTCT 58.706 36.000 19.19 0.00 45.31 3.24
2757 4357 6.549912 TGCATGATGCTGTTTATGATACTC 57.450 37.500 19.19 0.00 45.31 2.59
2758 4358 7.520451 AATGCATGATGCTGTTTATGATACT 57.480 32.000 19.19 0.00 45.31 2.12
2759 4359 8.583810 AAAATGCATGATGCTGTTTATGATAC 57.416 30.769 19.19 0.00 45.31 2.24
2761 4361 9.037737 GTTAAAATGCATGATGCTGTTTATGAT 57.962 29.630 19.19 7.31 45.31 2.45
2762 4362 8.252417 AGTTAAAATGCATGATGCTGTTTATGA 58.748 29.630 19.19 6.39 45.31 2.15
2763 4363 8.415192 AGTTAAAATGCATGATGCTGTTTATG 57.585 30.769 19.19 0.00 45.31 1.90
2764 4364 9.740239 CTAGTTAAAATGCATGATGCTGTTTAT 57.260 29.630 19.19 10.56 45.31 1.40
2765 4365 8.955388 TCTAGTTAAAATGCATGATGCTGTTTA 58.045 29.630 19.19 17.62 45.31 2.01
2766 4366 7.829725 TCTAGTTAAAATGCATGATGCTGTTT 58.170 30.769 19.19 18.54 45.31 2.83
2767 4367 7.395190 TCTAGTTAAAATGCATGATGCTGTT 57.605 32.000 19.19 10.53 45.31 3.16
2768 4368 7.578310 ATCTAGTTAAAATGCATGATGCTGT 57.422 32.000 19.19 4.50 45.31 4.40
2769 4369 8.867112 AAATCTAGTTAAAATGCATGATGCTG 57.133 30.769 19.19 0.00 45.31 4.41
2770 4370 9.880157 AAAAATCTAGTTAAAATGCATGATGCT 57.120 25.926 19.19 0.12 45.31 3.79
2797 4397 9.447157 TCATTTAATTGTGTGTCACATCATCTA 57.553 29.630 9.31 0.00 44.16 1.98
2798 4398 8.339344 TCATTTAATTGTGTGTCACATCATCT 57.661 30.769 9.31 2.97 44.16 2.90
2799 4399 7.699391 CCTCATTTAATTGTGTGTCACATCATC 59.301 37.037 9.31 0.00 44.16 2.92
2800 4400 7.394077 TCCTCATTTAATTGTGTGTCACATCAT 59.606 33.333 9.31 1.54 44.16 2.45
2801 4401 6.714356 TCCTCATTTAATTGTGTGTCACATCA 59.286 34.615 9.31 6.55 44.16 3.07
2802 4402 7.144722 TCCTCATTTAATTGTGTGTCACATC 57.855 36.000 9.31 3.94 44.16 3.06
2803 4403 7.523293 TTCCTCATTTAATTGTGTGTCACAT 57.477 32.000 9.31 0.00 44.16 3.21
2804 4404 6.951062 TTCCTCATTTAATTGTGTGTCACA 57.049 33.333 0.18 0.18 43.02 3.58
2805 4405 7.648142 TCTTTCCTCATTTAATTGTGTGTCAC 58.352 34.615 0.00 0.00 34.56 3.67
2806 4406 7.040478 CCTCTTTCCTCATTTAATTGTGTGTCA 60.040 37.037 0.00 0.00 0.00 3.58
2807 4407 7.308435 CCTCTTTCCTCATTTAATTGTGTGTC 58.692 38.462 0.00 0.00 0.00 3.67
2808 4408 6.209391 CCCTCTTTCCTCATTTAATTGTGTGT 59.791 38.462 0.00 0.00 0.00 3.72
2809 4409 6.350445 CCCCTCTTTCCTCATTTAATTGTGTG 60.350 42.308 0.00 0.00 0.00 3.82
2810 4410 5.716703 CCCCTCTTTCCTCATTTAATTGTGT 59.283 40.000 0.00 0.00 0.00 3.72
2811 4411 5.127682 CCCCCTCTTTCCTCATTTAATTGTG 59.872 44.000 0.00 0.00 0.00 3.33
2812 4412 5.222547 ACCCCCTCTTTCCTCATTTAATTGT 60.223 40.000 0.00 0.00 0.00 2.71
2813 4413 5.127682 CACCCCCTCTTTCCTCATTTAATTG 59.872 44.000 0.00 0.00 0.00 2.32
2814 4414 5.222547 ACACCCCCTCTTTCCTCATTTAATT 60.223 40.000 0.00 0.00 0.00 1.40
2815 4415 4.294970 ACACCCCCTCTTTCCTCATTTAAT 59.705 41.667 0.00 0.00 0.00 1.40
2816 4416 3.660669 ACACCCCCTCTTTCCTCATTTAA 59.339 43.478 0.00 0.00 0.00 1.52
2817 4417 3.010138 CACACCCCCTCTTTCCTCATTTA 59.990 47.826 0.00 0.00 0.00 1.40
2818 4418 2.073776 ACACCCCCTCTTTCCTCATTT 58.926 47.619 0.00 0.00 0.00 2.32
2819 4419 1.355720 CACACCCCCTCTTTCCTCATT 59.644 52.381 0.00 0.00 0.00 2.57
2820 4420 0.995024 CACACCCCCTCTTTCCTCAT 59.005 55.000 0.00 0.00 0.00 2.90
2821 4421 1.133809 CCACACCCCCTCTTTCCTCA 61.134 60.000 0.00 0.00 0.00 3.86
2822 4422 1.134438 ACCACACCCCCTCTTTCCTC 61.134 60.000 0.00 0.00 0.00 3.71
2823 4423 0.195096 TACCACACCCCCTCTTTCCT 59.805 55.000 0.00 0.00 0.00 3.36
2824 4424 1.212195 GATACCACACCCCCTCTTTCC 59.788 57.143 0.00 0.00 0.00 3.13
2825 4425 1.913419 TGATACCACACCCCCTCTTTC 59.087 52.381 0.00 0.00 0.00 2.62
2826 4426 2.053747 TGATACCACACCCCCTCTTT 57.946 50.000 0.00 0.00 0.00 2.52
2827 4427 2.286935 ATGATACCACACCCCCTCTT 57.713 50.000 0.00 0.00 0.00 2.85
2828 4428 3.116356 TGATATGATACCACACCCCCTCT 60.116 47.826 0.00 0.00 0.00 3.69
2829 4429 3.248024 TGATATGATACCACACCCCCTC 58.752 50.000 0.00 0.00 0.00 4.30
2830 4430 3.360740 TGATATGATACCACACCCCCT 57.639 47.619 0.00 0.00 0.00 4.79
2831 4431 3.587061 TCATGATATGATACCACACCCCC 59.413 47.826 0.00 0.00 33.59 5.40
2832 4432 4.908601 TCATGATATGATACCACACCCC 57.091 45.455 0.00 0.00 33.59 4.95
2867 4467 8.286800 GCATGACACAAAGTAGTACAACATTTA 58.713 33.333 2.52 0.00 0.00 1.40
2868 4468 7.138736 GCATGACACAAAGTAGTACAACATTT 58.861 34.615 2.52 0.00 0.00 2.32
2869 4469 6.262049 TGCATGACACAAAGTAGTACAACATT 59.738 34.615 2.52 0.00 0.00 2.71
2870 4470 5.762711 TGCATGACACAAAGTAGTACAACAT 59.237 36.000 2.52 0.00 0.00 2.71
2871 4471 5.119694 TGCATGACACAAAGTAGTACAACA 58.880 37.500 2.52 0.00 0.00 3.33
2872 4472 5.666969 TGCATGACACAAAGTAGTACAAC 57.333 39.130 2.52 0.00 0.00 3.32
2873 4473 5.994668 TCATGCATGACACAAAGTAGTACAA 59.005 36.000 25.42 0.00 0.00 2.41
2874 4474 5.546526 TCATGCATGACACAAAGTAGTACA 58.453 37.500 25.42 0.00 0.00 2.90
2888 4488 9.571810 GTTTGTCTTATTAATTGTCATGCATGA 57.428 29.630 25.42 25.42 0.00 3.07
2889 4489 9.577110 AGTTTGTCTTATTAATTGTCATGCATG 57.423 29.630 21.07 21.07 0.00 4.06
2921 4521 8.512956 CCGTAGTGCATAGTATCATAAGTTAGT 58.487 37.037 0.00 0.00 0.00 2.24
2922 4522 8.727910 TCCGTAGTGCATAGTATCATAAGTTAG 58.272 37.037 0.00 0.00 0.00 2.34
2923 4523 8.625786 TCCGTAGTGCATAGTATCATAAGTTA 57.374 34.615 0.00 0.00 0.00 2.24
2924 4524 7.520451 TCCGTAGTGCATAGTATCATAAGTT 57.480 36.000 0.00 0.00 0.00 2.66
2925 4525 7.176865 ACATCCGTAGTGCATAGTATCATAAGT 59.823 37.037 0.00 0.00 0.00 2.24
2926 4526 7.539436 ACATCCGTAGTGCATAGTATCATAAG 58.461 38.462 0.00 0.00 0.00 1.73
2927 4527 7.462571 ACATCCGTAGTGCATAGTATCATAA 57.537 36.000 0.00 0.00 0.00 1.90
2928 4528 8.209917 CTACATCCGTAGTGCATAGTATCATA 57.790 38.462 0.00 0.00 40.33 2.15
2929 4529 5.984695 ACATCCGTAGTGCATAGTATCAT 57.015 39.130 0.00 0.00 0.00 2.45
2930 4530 6.496338 CTACATCCGTAGTGCATAGTATCA 57.504 41.667 0.00 0.00 40.33 2.15
2975 4575 9.263446 GGTTGTAATGGGGAGTATCATATACTA 57.737 37.037 0.00 0.00 36.25 1.82
2976 4576 7.737607 TGGTTGTAATGGGGAGTATCATATACT 59.262 37.037 0.00 0.00 36.25 2.12
2977 4577 7.913789 TGGTTGTAATGGGGAGTATCATATAC 58.086 38.462 0.00 0.00 36.25 1.47
2978 4578 7.311046 GCTGGTTGTAATGGGGAGTATCATATA 60.311 40.741 0.00 0.00 36.25 0.86
2979 4579 6.522459 GCTGGTTGTAATGGGGAGTATCATAT 60.522 42.308 0.00 0.00 36.25 1.78
2980 4580 5.221843 GCTGGTTGTAATGGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
2981 4581 4.446311 GCTGGTTGTAATGGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
2982 4582 3.118038 GCTGGTTGTAATGGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
2983 4583 3.477530 GCTGGTTGTAATGGGGAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
2984 4584 2.174854 GGCTGGTTGTAATGGGGAGTAT 59.825 50.000 0.00 0.00 0.00 2.12
2985 4585 1.562475 GGCTGGTTGTAATGGGGAGTA 59.438 52.381 0.00 0.00 0.00 2.59
2986 4586 0.331616 GGCTGGTTGTAATGGGGAGT 59.668 55.000 0.00 0.00 0.00 3.85
2987 4587 0.625849 AGGCTGGTTGTAATGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
2988 4588 0.331278 CAGGCTGGTTGTAATGGGGA 59.669 55.000 6.61 0.00 0.00 4.81
2989 4589 0.331278 TCAGGCTGGTTGTAATGGGG 59.669 55.000 15.73 0.00 0.00 4.96
2990 4590 2.094675 CTTCAGGCTGGTTGTAATGGG 58.905 52.381 15.73 0.00 0.00 4.00
2991 4591 1.474077 GCTTCAGGCTGGTTGTAATGG 59.526 52.381 15.73 0.00 38.06 3.16
2992 4592 1.131126 CGCTTCAGGCTGGTTGTAATG 59.869 52.381 15.73 0.00 39.13 1.90
2993 4593 1.003118 TCGCTTCAGGCTGGTTGTAAT 59.997 47.619 15.73 0.00 39.13 1.89
2994 4594 0.394938 TCGCTTCAGGCTGGTTGTAA 59.605 50.000 15.73 0.00 39.13 2.41
2995 4595 0.394938 TTCGCTTCAGGCTGGTTGTA 59.605 50.000 15.73 0.00 39.13 2.41
2996 4596 1.148273 TTCGCTTCAGGCTGGTTGT 59.852 52.632 15.73 0.00 39.13 3.32
2997 4597 1.165907 TGTTCGCTTCAGGCTGGTTG 61.166 55.000 15.73 6.32 39.13 3.77
2998 4598 0.250901 ATGTTCGCTTCAGGCTGGTT 60.251 50.000 15.73 0.00 39.13 3.67
2999 4599 0.957395 CATGTTCGCTTCAGGCTGGT 60.957 55.000 15.73 0.00 39.13 4.00
3000 4600 1.798735 CATGTTCGCTTCAGGCTGG 59.201 57.895 15.73 0.00 39.13 4.85
3001 4601 1.136147 GCATGTTCGCTTCAGGCTG 59.864 57.895 8.58 8.58 39.12 4.85
3002 4602 0.890542 TTGCATGTTCGCTTCAGGCT 60.891 50.000 10.79 0.00 42.03 4.58
3003 4603 0.455633 CTTGCATGTTCGCTTCAGGC 60.456 55.000 0.00 0.00 41.90 4.85
3004 4604 0.169672 CCTTGCATGTTCGCTTCAGG 59.830 55.000 0.00 0.00 0.00 3.86
3005 4605 0.877071 ACCTTGCATGTTCGCTTCAG 59.123 50.000 0.00 0.00 0.00 3.02
3026 4636 8.627208 TTATGGAATAGCAAGGAATGAGATTC 57.373 34.615 0.00 0.00 38.55 2.52
3066 5034 1.367471 CCCTCTCGTTGTCACTGCA 59.633 57.895 0.00 0.00 0.00 4.41
3120 5309 1.721664 CCCAGAGGAACATGCATGCG 61.722 60.000 26.53 4.36 33.47 4.73
3161 5350 1.748493 GGTGGATACGTACGGGTACAA 59.252 52.381 21.06 0.00 42.51 2.41
3179 5373 0.324943 ATGCTCTAACTTGCACCGGT 59.675 50.000 0.00 0.00 42.26 5.28
3193 5387 0.809241 CTCAACGGCTGGAGATGCTC 60.809 60.000 0.00 0.00 32.87 4.26
3194 5388 1.220206 CTCAACGGCTGGAGATGCT 59.780 57.895 0.00 0.00 32.87 3.79
3195 5389 2.467826 GCTCAACGGCTGGAGATGC 61.468 63.158 0.00 0.00 32.87 3.91
3196 5390 1.817099 GGCTCAACGGCTGGAGATG 60.817 63.158 0.00 0.00 32.87 2.90
3197 5391 2.586792 GGCTCAACGGCTGGAGAT 59.413 61.111 0.00 0.00 32.87 2.75
3198 5392 3.706373 GGGCTCAACGGCTGGAGA 61.706 66.667 0.00 0.00 38.46 3.71
3199 5393 4.785453 GGGGCTCAACGGCTGGAG 62.785 72.222 0.00 0.00 38.46 3.86
3205 5399 3.628646 CTTCCTGGGGGCTCAACGG 62.629 68.421 0.00 0.00 0.00 4.44
3206 5400 2.045926 CTTCCTGGGGGCTCAACG 60.046 66.667 0.00 0.00 0.00 4.10
3207 5401 2.361737 GCTTCCTGGGGGCTCAAC 60.362 66.667 0.00 0.00 0.00 3.18
3208 5402 1.803453 AATGCTTCCTGGGGGCTCAA 61.803 55.000 11.64 0.00 0.00 3.02
3209 5403 1.803453 AAATGCTTCCTGGGGGCTCA 61.803 55.000 11.64 0.00 0.00 4.26
3210 5404 0.615827 AAAATGCTTCCTGGGGGCTC 60.616 55.000 11.64 0.00 0.00 4.70
3211 5405 0.178894 AAAAATGCTTCCTGGGGGCT 60.179 50.000 11.64 0.00 0.00 5.19
3212 5406 2.376063 AAAAATGCTTCCTGGGGGC 58.624 52.632 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.