Multiple sequence alignment - TraesCS2D01G143600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G143600 chr2D 100.000 4322 0 0 1 4322 84914800 84919121 0.000000e+00 7982.0
1 TraesCS2D01G143600 chr2D 93.647 2062 106 10 1513 3563 85673291 85675338 0.000000e+00 3059.0
2 TraesCS2D01G143600 chr2D 92.750 1862 116 13 1513 3359 85388874 85390731 0.000000e+00 2673.0
3 TraesCS2D01G143600 chr2D 86.983 991 54 31 547 1530 85672349 85673271 0.000000e+00 1046.0
4 TraesCS2D01G143600 chr2D 88.430 847 64 19 1 835 85387358 85388182 0.000000e+00 990.0
5 TraesCS2D01G143600 chr2D 89.969 648 37 10 892 1530 85388196 85388824 0.000000e+00 811.0
6 TraesCS2D01G143600 chr2D 91.382 557 43 2 5 560 85671782 85672334 0.000000e+00 758.0
7 TraesCS2D01G143600 chr2D 86.585 164 22 0 4137 4300 94447640 94447803 9.550000e-42 182.0
8 TraesCS2D01G143600 chr2B 91.833 2351 143 26 1234 3563 137188104 137190426 0.000000e+00 3232.0
9 TraesCS2D01G143600 chr2B 91.787 2143 136 11 1238 3359 137607846 137609969 0.000000e+00 2946.0
10 TraesCS2D01G143600 chr2B 92.792 1859 105 7 1513 3359 136805998 136807839 0.000000e+00 2663.0
11 TraesCS2D01G143600 chr2B 92.999 1714 105 5 1658 3359 136951179 136952889 0.000000e+00 2486.0
12 TraesCS2D01G143600 chr2B 87.992 1549 117 28 1 1530 136804480 136805978 0.000000e+00 1766.0
13 TraesCS2D01G143600 chr2B 92.714 1194 70 7 19 1209 136949465 136950644 0.000000e+00 1707.0
14 TraesCS2D01G143600 chr2B 87.518 689 69 11 1 680 137606775 137607455 0.000000e+00 780.0
15 TraesCS2D01G143600 chr2B 86.067 445 35 12 775 1209 137187681 137188108 1.830000e-123 453.0
16 TraesCS2D01G143600 chr2B 95.088 285 13 1 892 1176 137607566 137607849 8.530000e-122 448.0
17 TraesCS2D01G143600 chr2B 91.860 258 20 1 1 257 137144555 137144812 4.110000e-95 359.0
18 TraesCS2D01G143600 chr2B 91.473 258 21 1 1 257 137717429 137717686 1.910000e-93 353.0
19 TraesCS2D01G143600 chr2B 88.158 228 19 7 430 651 137185829 137186054 9.220000e-67 265.0
20 TraesCS2D01G143600 chr2B 91.892 185 15 0 1346 1530 136950886 136951070 4.290000e-65 259.0
21 TraesCS2D01G143600 chr2B 93.750 112 7 0 1234 1345 136950640 136950751 7.430000e-38 169.0
22 TraesCS2D01G143600 chr2B 95.604 91 4 0 1513 1603 136951090 136951180 3.480000e-31 147.0
23 TraesCS2D01G143600 chr2B 92.857 84 6 0 752 835 137607469 137607552 5.870000e-24 122.0
24 TraesCS2D01G143600 chr2B 96.000 50 2 0 699 748 137187631 137187680 9.960000e-12 82.4
25 TraesCS2D01G143600 chr2A 90.464 1531 129 13 1844 3365 84154116 84152594 0.000000e+00 2002.0
26 TraesCS2D01G143600 chr2A 83.242 364 37 16 3738 4093 84152438 84152091 3.240000e-81 313.0
27 TraesCS2D01G143600 chr2A 91.781 73 6 0 3491 3563 84152527 84152455 7.650000e-18 102.0
28 TraesCS2D01G143600 chr3B 76.372 1312 252 36 2082 3369 824391358 824392635 0.000000e+00 652.0
29 TraesCS2D01G143600 chr7D 76.267 1243 258 28 2120 3342 45706492 45705267 1.020000e-175 627.0
30 TraesCS2D01G143600 chr7D 76.653 711 137 21 2518 3209 16709135 16709835 2.460000e-97 366.0
31 TraesCS2D01G143600 chr7D 94.118 187 10 1 4137 4322 269699299 269699485 2.540000e-72 283.0
32 TraesCS2D01G143600 chr7D 79.878 164 22 7 1402 1554 472791072 472790909 4.570000e-20 110.0
33 TraesCS2D01G143600 chr7D 92.727 55 4 0 4038 4092 32252882 32252936 3.580000e-11 80.5
34 TraesCS2D01G143600 chr7D 100.000 30 0 0 588 617 613966034 613966005 6.040000e-04 56.5
35 TraesCS2D01G143600 chr7A 74.851 1340 262 52 2083 3387 32413303 32414602 4.920000e-149 538.0
36 TraesCS2D01G143600 chr7A 73.872 1263 254 51 2119 3348 15695271 15696490 6.640000e-118 435.0
37 TraesCS2D01G143600 chr7A 95.858 169 7 0 3573 3741 443397630 443397798 1.530000e-69 274.0
38 TraesCS2D01G143600 chr7A 80.147 136 21 5 1655 1784 522982769 522982904 3.560000e-16 97.1
39 TraesCS2D01G143600 chr7A 82.569 109 14 5 1502 1607 269271888 269271994 1.660000e-14 91.6
40 TraesCS2D01G143600 chr7A 88.571 70 8 0 4038 4107 32415218 32415287 7.700000e-13 86.1
41 TraesCS2D01G143600 chr5D 97.253 182 5 0 4141 4322 168228536 168228717 4.200000e-80 309.0
42 TraesCS2D01G143600 chr5D 93.750 176 11 0 3567 3742 445106660 445106485 9.220000e-67 265.0
43 TraesCS2D01G143600 chr5D 91.579 190 12 3 3555 3742 491000757 491000570 4.290000e-65 259.0
44 TraesCS2D01G143600 chr5D 84.000 75 10 1 1419 1493 222433475 222433547 2.160000e-08 71.3
45 TraesCS2D01G143600 chr5D 91.304 46 4 0 1513 1558 46603885 46603840 3.610000e-06 63.9
46 TraesCS2D01G143600 chr4D 95.604 182 4 1 4141 4322 477902619 477902796 5.470000e-74 289.0
47 TraesCS2D01G143600 chr1D 95.055 182 8 1 4141 4322 188989782 188989602 7.070000e-73 285.0
48 TraesCS2D01G143600 chr1D 96.364 165 6 0 3575 3739 362598056 362597892 5.510000e-69 272.0
49 TraesCS2D01G143600 chr3D 97.531 162 4 0 3569 3730 550509426 550509587 1.180000e-70 278.0
50 TraesCS2D01G143600 chr5A 93.956 182 11 0 4141 4322 635478377 635478196 4.260000e-70 276.0
51 TraesCS2D01G143600 chr5A 85.217 115 14 3 1475 1589 613462755 613462866 9.820000e-22 115.0
52 TraesCS2D01G143600 chr6D 94.767 172 8 1 3560 3730 203458920 203459091 2.560000e-67 267.0
53 TraesCS2D01G143600 chr6D 86.957 161 20 1 4141 4300 9461270 9461430 3.430000e-41 180.0
54 TraesCS2D01G143600 chr6A 92.935 184 12 1 3560 3743 458217888 458217706 2.560000e-67 267.0
55 TraesCS2D01G143600 chr3A 95.238 168 8 0 3572 3739 64291111 64290944 2.560000e-67 267.0
56 TraesCS2D01G143600 chrUn 92.021 188 10 5 3575 3759 112299381 112299196 4.290000e-65 259.0
57 TraesCS2D01G143600 chrUn 88.235 51 6 0 1725 1775 355953758 355953808 1.300000e-05 62.1
58 TraesCS2D01G143600 chr7B 89.840 187 18 1 4137 4322 183004010 183004196 5.590000e-59 239.0
59 TraesCS2D01G143600 chr1B 88.050 159 19 0 4141 4299 174594759 174594917 5.710000e-44 189.0
60 TraesCS2D01G143600 chr1A 92.683 41 3 0 1529 1569 543652843 543652803 4.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G143600 chr2D 84914800 84919121 4321 False 7982.000000 7982 100.000000 1 4322 1 chr2D.!!$F1 4321
1 TraesCS2D01G143600 chr2D 85671782 85675338 3556 False 1621.000000 3059 90.670667 5 3563 3 chr2D.!!$F4 3558
2 TraesCS2D01G143600 chr2D 85387358 85390731 3373 False 1491.333333 2673 90.383000 1 3359 3 chr2D.!!$F3 3358
3 TraesCS2D01G143600 chr2B 136804480 136807839 3359 False 2214.500000 2663 90.392000 1 3359 2 chr2B.!!$F3 3358
4 TraesCS2D01G143600 chr2B 137606775 137609969 3194 False 1074.000000 2946 91.812500 1 3359 4 chr2B.!!$F6 3358
5 TraesCS2D01G143600 chr2B 137185829 137190426 4597 False 1008.100000 3232 90.514500 430 3563 4 chr2B.!!$F5 3133
6 TraesCS2D01G143600 chr2B 136949465 136952889 3424 False 953.600000 2486 93.391800 19 3359 5 chr2B.!!$F4 3340
7 TraesCS2D01G143600 chr2A 84152091 84154116 2025 True 805.666667 2002 88.495667 1844 4093 3 chr2A.!!$R1 2249
8 TraesCS2D01G143600 chr3B 824391358 824392635 1277 False 652.000000 652 76.372000 2082 3369 1 chr3B.!!$F1 1287
9 TraesCS2D01G143600 chr7D 45705267 45706492 1225 True 627.000000 627 76.267000 2120 3342 1 chr7D.!!$R1 1222
10 TraesCS2D01G143600 chr7D 16709135 16709835 700 False 366.000000 366 76.653000 2518 3209 1 chr7D.!!$F1 691
11 TraesCS2D01G143600 chr7A 15695271 15696490 1219 False 435.000000 435 73.872000 2119 3348 1 chr7A.!!$F1 1229
12 TraesCS2D01G143600 chr7A 32413303 32415287 1984 False 312.050000 538 81.711000 2083 4107 2 chr7A.!!$F5 2024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 2290 0.254178 GCTTCTCCAGCCATCCAGAA 59.746 55.0 0.00 0.0 43.65 3.02 F
1179 2787 0.101759 TATTGGTCAGTAGCCGTCGC 59.898 55.0 0.00 0.0 0.00 5.19 F
2729 4613 0.392863 TCATCCATGTTCCAGTGGCG 60.393 55.0 3.51 0.0 35.43 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2390 4265 0.320697 ATCCCGATTAGCCTTACGCC 59.679 55.0 0.0 0.0 38.78 5.68 R
2827 4717 0.467290 ATGGTTTTGAGCGTGTGGGT 60.467 50.0 0.0 0.0 0.00 4.51 R
4116 6239 0.169672 GACACGCTGCTTAGGTCGTA 59.830 55.0 0.0 0.0 33.51 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.766970 CCTCGGTCTGGATGATGC 57.233 61.111 0.00 0.00 0.00 3.91
24 25 2.219458 GGTCTGGATGATGCTGACATG 58.781 52.381 21.39 0.00 38.15 3.21
177 182 4.891566 GACTGTGGTAGTCGGCTG 57.108 61.111 0.00 0.00 45.77 4.85
178 183 2.264124 GACTGTGGTAGTCGGCTGA 58.736 57.895 0.00 0.00 45.77 4.26
226 233 4.062991 GTGGTAGTTTGTTGTAGTGGAGG 58.937 47.826 0.00 0.00 0.00 4.30
269 278 4.072088 GCAACGACGACAAGCGGG 62.072 66.667 0.00 0.00 46.49 6.13
295 304 2.224378 GGCCCATCTCGATGATTCTTCA 60.224 50.000 8.42 0.00 41.20 3.02
319 329 1.750193 GCCAACCTTGCATAGTGCTA 58.250 50.000 3.41 0.00 45.31 3.49
382 393 2.116366 GGCGTGTGTGTTGTTCATTTC 58.884 47.619 0.00 0.00 0.00 2.17
418 429 2.357517 CCGCTTCTGCCACTTCGT 60.358 61.111 0.00 0.00 35.36 3.85
441 453 2.484264 GTGTACTCAGTCATTGGTTGCC 59.516 50.000 0.00 0.00 0.00 4.52
469 481 1.227704 TCAAAACGCTTGCTCGGGA 60.228 52.632 0.00 0.00 0.00 5.14
486 498 2.711542 GGGAAGAATTGGTGACGATGT 58.288 47.619 0.00 0.00 33.59 3.06
635 689 7.894708 TCTTAATCATTGAAAATGAGGTTGCA 58.105 30.769 8.50 0.00 0.00 4.08
636 690 8.030692 TCTTAATCATTGAAAATGAGGTTGCAG 58.969 33.333 8.50 1.93 0.00 4.41
681 2280 5.979517 AGAAAATTTTGTTTCGCTTCTCCAG 59.020 36.000 8.47 0.00 41.49 3.86
682 2281 2.774439 TTTTGTTTCGCTTCTCCAGC 57.226 45.000 0.00 0.00 46.31 4.85
689 2288 4.555610 GCTTCTCCAGCCATCCAG 57.444 61.111 0.00 0.00 43.65 3.86
690 2289 1.910722 GCTTCTCCAGCCATCCAGA 59.089 57.895 0.00 0.00 43.65 3.86
691 2290 0.254178 GCTTCTCCAGCCATCCAGAA 59.746 55.000 0.00 0.00 43.65 3.02
692 2291 1.340405 GCTTCTCCAGCCATCCAGAAA 60.340 52.381 0.00 0.00 43.65 2.52
693 2292 2.881403 GCTTCTCCAGCCATCCAGAAAA 60.881 50.000 0.00 0.00 43.65 2.29
694 2293 3.629087 CTTCTCCAGCCATCCAGAAAAT 58.371 45.455 0.00 0.00 0.00 1.82
695 2294 3.744940 TCTCCAGCCATCCAGAAAATT 57.255 42.857 0.00 0.00 0.00 1.82
696 2295 4.051661 TCTCCAGCCATCCAGAAAATTT 57.948 40.909 0.00 0.00 0.00 1.82
778 2377 1.668919 GCAAGGAACGATCGTCTGACA 60.669 52.381 22.98 0.00 0.00 3.58
1056 2664 1.613630 CCCTAGGTCTGCACACCCT 60.614 63.158 7.63 3.48 37.09 4.34
1088 2696 1.154434 TCCCTCTCTTTTCCCCTCCTT 59.846 52.381 0.00 0.00 0.00 3.36
1151 2759 2.479566 TCAGCCAAGAACACATCTCC 57.520 50.000 0.00 0.00 37.42 3.71
1158 2766 0.396435 AGAACACATCTCCACGGCAA 59.604 50.000 0.00 0.00 30.46 4.52
1179 2787 0.101759 TATTGGTCAGTAGCCGTCGC 59.898 55.000 0.00 0.00 0.00 5.19
1276 2886 1.342174 CCTGAGCAATGCTTTGGTTGT 59.658 47.619 9.91 0.00 43.35 3.32
1283 2893 3.059166 CAATGCTTTGGTTGTGTAAGGC 58.941 45.455 4.44 0.00 0.00 4.35
1304 2914 2.301505 GCGTACTGCGAGATTGCAT 58.698 52.632 0.00 0.00 45.26 3.96
1360 3104 3.689161 CGAGATTGGTGGCACTTGATTTA 59.311 43.478 18.45 0.00 0.00 1.40
1397 3141 9.903682 TGAGTATACTCTACAAAGTACAAACAC 57.096 33.333 28.53 2.18 43.25 3.32
1413 3157 3.849563 AACACCACCAGTTTAGCTACA 57.150 42.857 0.00 0.00 0.00 2.74
1454 3199 8.568676 TTATAATTTGGGTCAGTCGAATTTCA 57.431 30.769 0.00 0.00 32.36 2.69
1469 3214 4.610680 CGAATTTCACGTGAAGGAAGGAAC 60.611 45.833 28.21 14.61 35.21 3.62
1472 3217 0.868406 CACGTGAAGGAAGGAACAGC 59.132 55.000 10.90 0.00 0.00 4.40
1525 3354 3.582164 CCTCTGGGTCTATCTTAGGCTT 58.418 50.000 0.00 0.00 0.00 4.35
1603 3432 2.406002 AAAACTGGTCATCGCCGGGT 62.406 55.000 2.18 0.00 39.19 5.28
1713 3557 5.501156 GGTGAGGGAAGAGAAACAATACAT 58.499 41.667 0.00 0.00 0.00 2.29
1838 3693 0.474184 CCGCTCCCAAATATCACCCT 59.526 55.000 0.00 0.00 0.00 4.34
1966 3826 9.722056 CTTATTTTAATTGTAGTGTGCCATCTC 57.278 33.333 0.00 0.00 0.00 2.75
1984 3844 9.847224 TGCCATCTCGATATACATCTTACTATA 57.153 33.333 0.00 0.00 0.00 1.31
2304 4179 2.508526 CTCCTTGCTTTTACTGGCACT 58.491 47.619 0.00 0.00 38.23 4.40
2387 4262 1.065564 ACCTCTCCATCTCAAAGCAGC 60.066 52.381 0.00 0.00 0.00 5.25
2390 4265 2.678836 CTCTCCATCTCAAAGCAGCTTG 59.321 50.000 8.88 3.34 0.00 4.01
2706 4590 2.558795 CTCGTGTCTCCTCCTTTTCTCA 59.441 50.000 0.00 0.00 0.00 3.27
2729 4613 0.392863 TCATCCATGTTCCAGTGGCG 60.393 55.000 3.51 0.00 35.43 5.69
2822 4712 0.819582 GGTCAGATGTTTGCCATGGG 59.180 55.000 15.13 0.00 32.56 4.00
2902 4795 1.375326 GTTGTGTGGGGAGAGGACC 59.625 63.158 0.00 0.00 0.00 4.46
3009 4914 3.645884 CAATGGCACCTTTCAAGTCTTG 58.354 45.455 6.21 6.21 0.00 3.02
3011 4916 1.032014 GGCACCTTTCAAGTCTTGCA 58.968 50.000 7.78 0.00 0.00 4.08
3102 5007 1.056700 GCCTTGATAGGAGGAGCCCA 61.057 60.000 0.00 0.00 45.05 5.36
3189 5097 3.703001 TCCAAAGACTCTGATGAACCC 57.297 47.619 0.00 0.00 0.00 4.11
3265 5173 1.137872 ACATTCTAGGAGGCAGAAGCG 59.862 52.381 0.00 0.00 43.41 4.68
3323 5237 2.086869 CTATGGTGTTGGCCAGTGAAG 58.913 52.381 5.11 0.00 42.47 3.02
3399 5381 9.869844 GACTGCTGCTTTTACAAGTATATTATG 57.130 33.333 0.00 0.00 31.86 1.90
3461 5498 8.975410 ATTTTATGGACGATTATTCATGCATG 57.025 30.769 21.07 21.07 28.75 4.06
3481 5518 2.815503 TGTGTGTTCCTTGATCTGCATG 59.184 45.455 0.00 0.00 0.00 4.06
3498 5581 0.395311 ATGCCATGTGCCTCTCCTTG 60.395 55.000 4.07 0.00 40.16 3.61
3511 5594 3.549794 CTCTCCTTGGCTTTAATGGAGG 58.450 50.000 0.00 0.00 43.14 4.30
3563 5663 1.278985 TGCACCTACTGTTAGCATGCT 59.721 47.619 25.99 25.99 37.06 3.79
3564 5664 2.499693 TGCACCTACTGTTAGCATGCTA 59.500 45.455 23.52 23.52 37.06 3.49
3565 5665 3.055458 TGCACCTACTGTTAGCATGCTAA 60.055 43.478 31.53 31.53 37.06 3.09
3567 5667 4.576463 GCACCTACTGTTAGCATGCTAAAT 59.424 41.667 35.41 26.13 39.82 1.40
3568 5668 5.504665 GCACCTACTGTTAGCATGCTAAATG 60.505 44.000 35.41 30.12 39.82 2.32
3583 5683 4.068599 GCTAAATGCAATCTACTCCCTCC 58.931 47.826 0.00 0.00 42.31 4.30
3584 5684 2.918712 AATGCAATCTACTCCCTCCG 57.081 50.000 0.00 0.00 0.00 4.63
3585 5685 1.794714 ATGCAATCTACTCCCTCCGT 58.205 50.000 0.00 0.00 0.00 4.69
3586 5686 1.568504 TGCAATCTACTCCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
3587 5687 1.480954 TGCAATCTACTCCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
3588 5688 1.202545 GCAATCTACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
3589 5689 2.389715 CAATCTACTCCCTCCGTTCCT 58.610 52.381 0.00 0.00 0.00 3.36
3590 5690 3.563223 CAATCTACTCCCTCCGTTCCTA 58.437 50.000 0.00 0.00 0.00 2.94
3591 5691 3.958798 CAATCTACTCCCTCCGTTCCTAA 59.041 47.826 0.00 0.00 0.00 2.69
3592 5692 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3593 5693 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3594 5694 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3595 5695 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3596 5696 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3597 5697 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3598 5698 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3599 5699 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3600 5700 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3601 5701 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3602 5702 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3603 5703 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3604 5704 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3605 5705 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3621 5721 8.924511 AAGTCTTTTTAGACATTTCAGATGGA 57.075 30.769 7.92 0.00 41.02 3.41
3622 5722 8.329203 AGTCTTTTTAGACATTTCAGATGGAC 57.671 34.615 7.92 0.00 41.02 4.02
3623 5723 8.160106 AGTCTTTTTAGACATTTCAGATGGACT 58.840 33.333 7.92 0.00 41.02 3.85
3624 5724 9.436957 GTCTTTTTAGACATTTCAGATGGACTA 57.563 33.333 0.00 0.00 38.59 2.59
3632 5732 9.988815 AGACATTTCAGATGGACTATAACATAC 57.011 33.333 0.00 0.00 0.00 2.39
3633 5733 8.818141 ACATTTCAGATGGACTATAACATACG 57.182 34.615 0.00 0.00 0.00 3.06
3634 5734 7.872993 ACATTTCAGATGGACTATAACATACGG 59.127 37.037 0.00 0.00 0.00 4.02
3635 5735 7.591421 TTTCAGATGGACTATAACATACGGA 57.409 36.000 0.00 0.00 0.00 4.69
3636 5736 7.776618 TTCAGATGGACTATAACATACGGAT 57.223 36.000 0.00 0.00 0.00 4.18
3637 5737 7.158099 TCAGATGGACTATAACATACGGATG 57.842 40.000 5.94 5.94 39.16 3.51
3639 5739 7.886446 TCAGATGGACTATAACATACGGATGTA 59.114 37.037 15.10 3.00 45.93 2.29
3640 5740 8.687242 CAGATGGACTATAACATACGGATGTAT 58.313 37.037 15.10 10.34 45.93 2.29
3679 5779 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3680 5780 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3681 5781 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3682 5782 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3683 5783 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3684 5784 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3685 5785 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3686 5786 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3687 5787 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3688 5788 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3689 5789 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3690 5790 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3691 5791 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3692 5792 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3693 5793 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3694 5794 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3695 5795 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3696 5796 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3697 5797 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3698 5798 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3699 5799 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3700 5800 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3701 5801 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3702 5802 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3703 5803 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3704 5804 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3705 5805 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3706 5806 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3707 5807 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3709 5809 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
3710 5810 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
3713 5813 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
3714 5814 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
3715 5815 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
3745 5845 5.388408 AGGAACGAAGAAAGTACTACTGG 57.612 43.478 0.00 0.00 0.00 4.00
3750 5850 5.707931 ACGAAGAAAGTACTACTGGTTAGC 58.292 41.667 0.00 0.00 0.00 3.09
3753 5853 5.074584 AGAAAGTACTACTGGTTAGCAGC 57.925 43.478 11.64 0.00 0.00 5.25
3760 5860 0.326264 ACTGGTTAGCAGCCCTCTTG 59.674 55.000 11.64 0.00 0.00 3.02
3769 5869 1.683011 GCAGCCCTCTTGGATTGCTTA 60.683 52.381 0.00 0.00 38.54 3.09
3775 5875 6.716628 CAGCCCTCTTGGATTGCTTATTAATA 59.283 38.462 0.00 0.00 35.39 0.98
3778 5878 7.867909 GCCCTCTTGGATTGCTTATTAATAAAC 59.132 37.037 9.15 5.62 35.39 2.01
3805 5911 4.102524 ACACTGGGTTCTACTTTCATGTCA 59.897 41.667 0.00 0.00 0.00 3.58
3817 5923 4.510340 ACTTTCATGTCACGACAAGGTAAC 59.490 41.667 3.61 0.00 45.41 2.50
3855 5962 3.243501 TGTTTCTTTTGATCTGCAGGCAC 60.244 43.478 15.13 6.33 0.00 5.01
3869 5976 1.329292 CAGGCACGAGTTTGACGAAAA 59.671 47.619 0.00 0.00 34.70 2.29
3870 5977 2.032030 CAGGCACGAGTTTGACGAAAAT 60.032 45.455 0.00 0.00 34.70 1.82
3883 5990 7.382218 AGTTTGACGAAAATTTGCCTAAGAATG 59.618 33.333 0.00 0.00 0.00 2.67
3898 6005 7.497925 CCTAAGAATGTTAGGCTGGTATTTC 57.502 40.000 3.13 0.00 35.60 2.17
3920 6027 4.855298 CCCCCAAACCTTTAGAGTGATA 57.145 45.455 0.00 0.00 0.00 2.15
3924 6031 6.096846 CCCCCAAACCTTTAGAGTGATATTTG 59.903 42.308 0.00 0.00 0.00 2.32
3961 6068 6.808008 TCAAGGATGAAAGAGATGTTTGTC 57.192 37.500 0.00 0.00 30.99 3.18
3962 6069 5.707298 TCAAGGATGAAAGAGATGTTTGTCC 59.293 40.000 0.00 0.00 30.99 4.02
3963 6070 5.511386 AGGATGAAAGAGATGTTTGTCCT 57.489 39.130 0.00 0.00 31.15 3.85
3964 6071 6.627087 AGGATGAAAGAGATGTTTGTCCTA 57.373 37.500 4.92 0.00 32.91 2.94
3966 6073 6.881602 AGGATGAAAGAGATGTTTGTCCTAAC 59.118 38.462 4.92 0.00 32.91 2.34
3967 6074 6.183360 GGATGAAAGAGATGTTTGTCCTAACG 60.183 42.308 0.00 0.00 0.00 3.18
3971 6078 7.711772 TGAAAGAGATGTTTGTCCTAACGTTTA 59.288 33.333 5.91 0.00 0.00 2.01
3973 6080 6.164176 AGAGATGTTTGTCCTAACGTTTAGG 58.836 40.000 5.91 11.46 36.06 2.69
3974 6081 5.243207 AGATGTTTGTCCTAACGTTTAGGG 58.757 41.667 5.91 7.20 35.45 3.53
3975 6082 4.686191 TGTTTGTCCTAACGTTTAGGGA 57.314 40.909 5.91 9.59 35.45 4.20
3976 6083 4.379652 TGTTTGTCCTAACGTTTAGGGAC 58.620 43.478 26.52 26.52 45.86 4.46
3981 6088 4.686972 GTCCTAACGTTTAGGGACATACC 58.313 47.826 27.44 11.67 45.23 2.73
3990 6097 4.819105 TTAGGGACATACCAACTCACAG 57.181 45.455 0.00 0.00 41.20 3.66
3996 6103 5.010282 GGACATACCAACTCACAGGAAAAT 58.990 41.667 0.00 0.00 38.79 1.82
4001 6108 4.792068 ACCAACTCACAGGAAAATCTCAA 58.208 39.130 0.00 0.00 0.00 3.02
4013 6121 7.015001 ACAGGAAAATCTCAAAAAGATGAAGCT 59.985 33.333 0.00 0.00 44.26 3.74
4021 6134 9.732130 ATCTCAAAAAGATGAAGCTTTACTAGT 57.268 29.630 0.00 0.00 43.35 2.57
4096 6219 6.360681 GCTTATTGCGATTGAAATGTACCATC 59.639 38.462 0.00 0.00 0.00 3.51
4097 6220 4.630894 TTGCGATTGAAATGTACCATCC 57.369 40.909 0.00 0.00 0.00 3.51
4098 6221 3.884895 TGCGATTGAAATGTACCATCCT 58.115 40.909 0.00 0.00 0.00 3.24
4120 6243 4.877378 TTTTTCTCCCTTGCTACTACGA 57.123 40.909 0.00 0.00 0.00 3.43
4121 6244 3.863142 TTTCTCCCTTGCTACTACGAC 57.137 47.619 0.00 0.00 0.00 4.34
4122 6245 1.760192 TCTCCCTTGCTACTACGACC 58.240 55.000 0.00 0.00 0.00 4.79
4123 6246 1.284198 TCTCCCTTGCTACTACGACCT 59.716 52.381 0.00 0.00 0.00 3.85
4124 6247 2.507058 TCTCCCTTGCTACTACGACCTA 59.493 50.000 0.00 0.00 0.00 3.08
4125 6248 3.054139 TCTCCCTTGCTACTACGACCTAA 60.054 47.826 0.00 0.00 0.00 2.69
4126 6249 3.285484 TCCCTTGCTACTACGACCTAAG 58.715 50.000 0.00 0.00 0.00 2.18
4127 6250 2.223758 CCCTTGCTACTACGACCTAAGC 60.224 54.545 0.00 0.00 0.00 3.09
4128 6251 2.426024 CCTTGCTACTACGACCTAAGCA 59.574 50.000 0.00 0.00 41.19 3.91
4129 6252 3.489398 CCTTGCTACTACGACCTAAGCAG 60.489 52.174 0.00 0.00 43.47 4.24
4130 6253 1.404391 TGCTACTACGACCTAAGCAGC 59.596 52.381 0.00 0.00 38.22 5.25
4131 6254 1.597445 GCTACTACGACCTAAGCAGCG 60.597 57.143 0.00 0.00 33.38 5.18
4132 6255 1.669779 CTACTACGACCTAAGCAGCGT 59.330 52.381 0.00 0.00 40.42 5.07
4133 6256 0.170561 ACTACGACCTAAGCAGCGTG 59.829 55.000 0.00 0.00 37.56 5.34
4134 6257 0.170561 CTACGACCTAAGCAGCGTGT 59.829 55.000 0.00 0.00 37.56 4.49
4135 6258 0.169672 TACGACCTAAGCAGCGTGTC 59.830 55.000 0.00 0.00 37.56 3.67
4136 6259 1.080772 CGACCTAAGCAGCGTGTCA 60.081 57.895 0.00 0.00 0.00 3.58
4137 6260 0.458543 CGACCTAAGCAGCGTGTCAT 60.459 55.000 0.00 0.00 0.00 3.06
4138 6261 1.726853 GACCTAAGCAGCGTGTCATT 58.273 50.000 0.00 0.00 0.00 2.57
4139 6262 2.076863 GACCTAAGCAGCGTGTCATTT 58.923 47.619 0.00 0.00 0.00 2.32
4140 6263 1.806542 ACCTAAGCAGCGTGTCATTTG 59.193 47.619 0.00 0.00 0.00 2.32
4141 6264 2.076100 CCTAAGCAGCGTGTCATTTGA 58.924 47.619 0.00 0.00 0.00 2.69
4142 6265 2.094894 CCTAAGCAGCGTGTCATTTGAG 59.905 50.000 0.00 0.00 0.00 3.02
4143 6266 1.597742 AAGCAGCGTGTCATTTGAGT 58.402 45.000 0.00 0.00 0.00 3.41
4144 6267 2.455674 AGCAGCGTGTCATTTGAGTA 57.544 45.000 0.00 0.00 0.00 2.59
4145 6268 2.766313 AGCAGCGTGTCATTTGAGTAA 58.234 42.857 0.00 0.00 0.00 2.24
4146 6269 3.138304 AGCAGCGTGTCATTTGAGTAAA 58.862 40.909 0.00 0.00 0.00 2.01
4147 6270 3.563808 AGCAGCGTGTCATTTGAGTAAAA 59.436 39.130 0.00 0.00 0.00 1.52
4148 6271 4.216257 AGCAGCGTGTCATTTGAGTAAAAT 59.784 37.500 0.00 0.00 39.13 1.82
4158 6281 6.411630 CATTTGAGTAAAATGCATTGGTGG 57.588 37.500 13.82 0.00 46.43 4.61
4159 6282 5.543507 TTTGAGTAAAATGCATTGGTGGT 57.456 34.783 13.82 0.00 0.00 4.16
4160 6283 4.782019 TGAGTAAAATGCATTGGTGGTC 57.218 40.909 13.82 7.33 0.00 4.02
4161 6284 4.148079 TGAGTAAAATGCATTGGTGGTCA 58.852 39.130 13.82 9.79 0.00 4.02
4162 6285 4.022416 TGAGTAAAATGCATTGGTGGTCAC 60.022 41.667 13.82 3.79 0.00 3.67
4163 6286 4.151883 AGTAAAATGCATTGGTGGTCACT 58.848 39.130 13.82 5.93 0.00 3.41
4164 6287 5.321102 AGTAAAATGCATTGGTGGTCACTA 58.679 37.500 13.82 0.00 0.00 2.74
4165 6288 4.789012 AAAATGCATTGGTGGTCACTAG 57.211 40.909 13.82 0.00 0.00 2.57
4166 6289 3.719268 AATGCATTGGTGGTCACTAGA 57.281 42.857 12.09 0.00 0.00 2.43
4167 6290 2.472695 TGCATTGGTGGTCACTAGAC 57.527 50.000 0.00 0.00 44.21 2.59
4168 6291 1.977854 TGCATTGGTGGTCACTAGACT 59.022 47.619 0.00 0.00 44.36 3.24
4169 6292 2.371841 TGCATTGGTGGTCACTAGACTT 59.628 45.455 0.00 0.00 44.36 3.01
4170 6293 2.744202 GCATTGGTGGTCACTAGACTTG 59.256 50.000 0.00 0.00 44.36 3.16
4171 6294 3.807209 GCATTGGTGGTCACTAGACTTGT 60.807 47.826 0.00 0.00 44.36 3.16
4172 6295 3.746045 TTGGTGGTCACTAGACTTGTC 57.254 47.619 0.00 0.00 44.36 3.18
4173 6296 1.611977 TGGTGGTCACTAGACTTGTCG 59.388 52.381 0.00 0.00 44.36 4.35
4174 6297 1.612463 GGTGGTCACTAGACTTGTCGT 59.388 52.381 0.00 0.00 44.36 4.34
4175 6298 2.607282 GGTGGTCACTAGACTTGTCGTG 60.607 54.545 0.00 3.49 44.36 4.35
4176 6299 2.034305 GTGGTCACTAGACTTGTCGTGT 59.966 50.000 0.00 3.43 44.36 4.49
4177 6300 2.292569 TGGTCACTAGACTTGTCGTGTC 59.707 50.000 0.00 0.00 44.36 3.67
4178 6301 2.351544 GGTCACTAGACTTGTCGTGTCC 60.352 54.545 0.00 8.34 44.36 4.02
4179 6302 1.534163 TCACTAGACTTGTCGTGTCCG 59.466 52.381 0.00 0.00 35.21 4.79
4180 6303 1.266175 CACTAGACTTGTCGTGTCCGT 59.734 52.381 0.00 0.00 35.21 4.69
4181 6304 1.952296 ACTAGACTTGTCGTGTCCGTT 59.048 47.619 0.00 0.00 35.21 4.44
4182 6305 2.031333 ACTAGACTTGTCGTGTCCGTTC 60.031 50.000 0.00 0.00 35.21 3.95
4183 6306 0.742505 AGACTTGTCGTGTCCGTTCA 59.257 50.000 0.00 0.00 35.21 3.18
4184 6307 1.129326 GACTTGTCGTGTCCGTTCAG 58.871 55.000 0.00 0.00 35.01 3.02
4185 6308 0.458669 ACTTGTCGTGTCCGTTCAGT 59.541 50.000 0.00 0.00 35.01 3.41
4186 6309 1.134907 ACTTGTCGTGTCCGTTCAGTT 60.135 47.619 0.00 0.00 35.01 3.16
4187 6310 1.931172 CTTGTCGTGTCCGTTCAGTTT 59.069 47.619 0.00 0.00 35.01 2.66
4188 6311 1.282817 TGTCGTGTCCGTTCAGTTTG 58.717 50.000 0.00 0.00 35.01 2.93
4189 6312 0.580104 GTCGTGTCCGTTCAGTTTGG 59.420 55.000 0.00 0.00 35.01 3.28
4190 6313 0.176219 TCGTGTCCGTTCAGTTTGGT 59.824 50.000 0.00 0.00 35.01 3.67
4191 6314 0.580104 CGTGTCCGTTCAGTTTGGTC 59.420 55.000 0.00 0.00 0.00 4.02
4192 6315 1.658994 GTGTCCGTTCAGTTTGGTCA 58.341 50.000 0.00 0.00 0.00 4.02
4193 6316 1.329599 GTGTCCGTTCAGTTTGGTCAC 59.670 52.381 0.00 0.00 35.34 3.67
4194 6317 1.208535 TGTCCGTTCAGTTTGGTCACT 59.791 47.619 0.00 0.00 0.00 3.41
4195 6318 1.597663 GTCCGTTCAGTTTGGTCACTG 59.402 52.381 0.00 0.00 44.96 3.66
4196 6319 1.208535 TCCGTTCAGTTTGGTCACTGT 59.791 47.619 0.97 0.00 44.10 3.55
4197 6320 2.431419 TCCGTTCAGTTTGGTCACTGTA 59.569 45.455 0.97 0.00 44.10 2.74
4198 6321 2.542595 CCGTTCAGTTTGGTCACTGTAC 59.457 50.000 0.97 1.33 44.10 2.90
4199 6322 3.454375 CGTTCAGTTTGGTCACTGTACT 58.546 45.455 8.40 0.00 44.10 2.73
4200 6323 3.489785 CGTTCAGTTTGGTCACTGTACTC 59.510 47.826 8.40 0.00 44.10 2.59
4201 6324 4.439057 GTTCAGTTTGGTCACTGTACTCA 58.561 43.478 0.00 0.00 44.10 3.41
4202 6325 4.746535 TCAGTTTGGTCACTGTACTCAA 57.253 40.909 0.00 0.00 44.10 3.02
4203 6326 5.092554 TCAGTTTGGTCACTGTACTCAAA 57.907 39.130 0.00 0.00 44.10 2.69
4204 6327 5.492895 TCAGTTTGGTCACTGTACTCAAAA 58.507 37.500 0.00 0.00 44.10 2.44
4205 6328 5.941058 TCAGTTTGGTCACTGTACTCAAAAA 59.059 36.000 0.00 0.00 44.10 1.94
4206 6329 6.601613 TCAGTTTGGTCACTGTACTCAAAAAT 59.398 34.615 0.00 0.00 44.10 1.82
4207 6330 7.771361 TCAGTTTGGTCACTGTACTCAAAAATA 59.229 33.333 0.00 0.00 44.10 1.40
4208 6331 7.855904 CAGTTTGGTCACTGTACTCAAAAATAC 59.144 37.037 0.00 0.00 39.59 1.89
4209 6332 7.554835 AGTTTGGTCACTGTACTCAAAAATACA 59.445 33.333 0.00 0.00 0.00 2.29
4233 6356 9.745880 ACAGTTAATATGGTCACTAAATACGAG 57.254 33.333 0.00 0.00 0.00 4.18
4234 6357 9.745880 CAGTTAATATGGTCACTAAATACGAGT 57.254 33.333 0.00 0.00 0.00 4.18
4238 6361 8.420374 AATATGGTCACTAAATACGAGTTGTG 57.580 34.615 0.00 0.00 0.00 3.33
4239 6362 4.562082 TGGTCACTAAATACGAGTTGTGG 58.438 43.478 0.00 0.00 0.00 4.17
4240 6363 4.039488 TGGTCACTAAATACGAGTTGTGGT 59.961 41.667 0.00 0.00 0.00 4.16
4241 6364 4.387862 GGTCACTAAATACGAGTTGTGGTG 59.612 45.833 0.00 0.00 0.00 4.17
4242 6365 5.224888 GTCACTAAATACGAGTTGTGGTGA 58.775 41.667 0.00 0.00 0.00 4.02
4243 6366 5.867716 GTCACTAAATACGAGTTGTGGTGAT 59.132 40.000 0.00 0.00 34.49 3.06
4244 6367 6.367969 GTCACTAAATACGAGTTGTGGTGATT 59.632 38.462 0.00 0.00 34.49 2.57
4245 6368 7.543172 GTCACTAAATACGAGTTGTGGTGATTA 59.457 37.037 0.00 0.00 34.49 1.75
4246 6369 8.255206 TCACTAAATACGAGTTGTGGTGATTAT 58.745 33.333 0.00 0.00 0.00 1.28
4247 6370 9.524106 CACTAAATACGAGTTGTGGTGATTATA 57.476 33.333 0.00 0.00 0.00 0.98
4248 6371 9.525409 ACTAAATACGAGTTGTGGTGATTATAC 57.475 33.333 0.00 0.00 0.00 1.47
4249 6372 7.459394 AAATACGAGTTGTGGTGATTATACG 57.541 36.000 0.00 0.00 0.00 3.06
4250 6373 3.777478 ACGAGTTGTGGTGATTATACGG 58.223 45.455 0.00 0.00 0.00 4.02
4251 6374 3.194116 ACGAGTTGTGGTGATTATACGGT 59.806 43.478 0.00 0.00 0.00 4.83
4252 6375 3.795101 CGAGTTGTGGTGATTATACGGTC 59.205 47.826 0.00 0.00 0.00 4.79
4253 6376 4.675933 CGAGTTGTGGTGATTATACGGTCA 60.676 45.833 0.00 0.00 0.00 4.02
4254 6377 4.501071 AGTTGTGGTGATTATACGGTCAC 58.499 43.478 0.00 0.00 43.02 3.67
4255 6378 4.222145 AGTTGTGGTGATTATACGGTCACT 59.778 41.667 10.30 0.00 43.23 3.41
4256 6379 4.118093 TGTGGTGATTATACGGTCACTG 57.882 45.455 10.30 0.00 43.23 3.66
4257 6380 3.512329 TGTGGTGATTATACGGTCACTGT 59.488 43.478 0.00 0.00 43.23 3.55
4258 6381 4.110482 GTGGTGATTATACGGTCACTGTC 58.890 47.826 0.00 0.00 43.23 3.51
4259 6382 3.764972 TGGTGATTATACGGTCACTGTCA 59.235 43.478 0.00 0.00 43.23 3.58
4260 6383 4.110482 GGTGATTATACGGTCACTGTCAC 58.890 47.826 0.00 0.00 43.23 3.67
4261 6384 4.381185 GGTGATTATACGGTCACTGTCACA 60.381 45.833 0.00 0.00 43.23 3.58
4262 6385 5.348986 GTGATTATACGGTCACTGTCACAT 58.651 41.667 0.00 0.00 41.10 3.21
4263 6386 5.459107 GTGATTATACGGTCACTGTCACATC 59.541 44.000 0.00 0.00 41.10 3.06
4264 6387 2.561733 ATACGGTCACTGTCACATCG 57.438 50.000 0.00 0.00 0.00 3.84
4265 6388 1.241165 TACGGTCACTGTCACATCGT 58.759 50.000 0.00 0.00 0.00 3.73
4266 6389 1.241165 ACGGTCACTGTCACATCGTA 58.759 50.000 0.00 0.00 0.00 3.43
4267 6390 1.816835 ACGGTCACTGTCACATCGTAT 59.183 47.619 0.00 0.00 0.00 3.06
4268 6391 3.011818 ACGGTCACTGTCACATCGTATA 58.988 45.455 0.00 0.00 0.00 1.47
4269 6392 3.630769 ACGGTCACTGTCACATCGTATAT 59.369 43.478 0.00 0.00 0.00 0.86
4270 6393 4.219802 CGGTCACTGTCACATCGTATATC 58.780 47.826 0.00 0.00 0.00 1.63
4271 6394 4.023963 CGGTCACTGTCACATCGTATATCT 60.024 45.833 0.00 0.00 0.00 1.98
4272 6395 5.505819 CGGTCACTGTCACATCGTATATCTT 60.506 44.000 0.00 0.00 0.00 2.40
4273 6396 5.915758 GGTCACTGTCACATCGTATATCTTC 59.084 44.000 0.00 0.00 0.00 2.87
4274 6397 5.621634 GTCACTGTCACATCGTATATCTTCG 59.378 44.000 0.00 0.00 0.00 3.79
4275 6398 5.296035 TCACTGTCACATCGTATATCTTCGT 59.704 40.000 0.00 0.00 0.00 3.85
4276 6399 6.480981 TCACTGTCACATCGTATATCTTCGTA 59.519 38.462 0.00 0.00 0.00 3.43
4277 6400 7.172703 TCACTGTCACATCGTATATCTTCGTAT 59.827 37.037 0.00 0.00 0.00 3.06
4278 6401 7.803659 CACTGTCACATCGTATATCTTCGTATT 59.196 37.037 0.00 0.00 0.00 1.89
4279 6402 8.350722 ACTGTCACATCGTATATCTTCGTATTT 58.649 33.333 0.00 0.00 0.00 1.40
4280 6403 9.181805 CTGTCACATCGTATATCTTCGTATTTT 57.818 33.333 0.00 0.00 0.00 1.82
4281 6404 8.964150 TGTCACATCGTATATCTTCGTATTTTG 58.036 33.333 0.00 0.00 0.00 2.44
4282 6405 8.965172 GTCACATCGTATATCTTCGTATTTTGT 58.035 33.333 0.00 0.00 0.00 2.83
4283 6406 9.524106 TCACATCGTATATCTTCGTATTTTGTT 57.476 29.630 0.00 0.00 0.00 2.83
4284 6407 9.567917 CACATCGTATATCTTCGTATTTTGTTG 57.432 33.333 0.00 0.00 0.00 3.33
4285 6408 9.524106 ACATCGTATATCTTCGTATTTTGTTGA 57.476 29.630 0.00 0.00 0.00 3.18
4286 6409 9.995379 CATCGTATATCTTCGTATTTTGTTGAG 57.005 33.333 0.00 0.00 0.00 3.02
4287 6410 9.745880 ATCGTATATCTTCGTATTTTGTTGAGT 57.254 29.630 0.00 0.00 0.00 3.41
4288 6411 9.577110 TCGTATATCTTCGTATTTTGTTGAGTT 57.423 29.630 0.00 0.00 0.00 3.01
4289 6412 9.619727 CGTATATCTTCGTATTTTGTTGAGTTG 57.380 33.333 0.00 0.00 0.00 3.16
4292 6415 7.730364 ATCTTCGTATTTTGTTGAGTTGACT 57.270 32.000 0.00 0.00 0.00 3.41
4293 6416 8.827177 ATCTTCGTATTTTGTTGAGTTGACTA 57.173 30.769 0.00 0.00 0.00 2.59
4294 6417 8.294341 TCTTCGTATTTTGTTGAGTTGACTAG 57.706 34.615 0.00 0.00 0.00 2.57
4295 6418 7.924412 TCTTCGTATTTTGTTGAGTTGACTAGT 59.076 33.333 0.00 0.00 0.00 2.57
4296 6419 7.633361 TCGTATTTTGTTGAGTTGACTAGTC 57.367 36.000 16.32 16.32 0.00 2.59
4297 6420 7.204604 TCGTATTTTGTTGAGTTGACTAGTCA 58.795 34.615 21.74 21.74 37.91 3.41
4298 6421 7.707464 TCGTATTTTGTTGAGTTGACTAGTCAA 59.293 33.333 30.07 30.07 46.27 3.18
4317 6440 5.125100 TCAAACAGTTTGAATGATGCCTC 57.875 39.130 23.82 0.00 45.94 4.70
4318 6441 4.022068 TCAAACAGTTTGAATGATGCCTCC 60.022 41.667 23.82 0.00 45.94 4.30
4319 6442 3.446442 ACAGTTTGAATGATGCCTCCT 57.554 42.857 0.00 0.00 0.00 3.69
4320 6443 3.350833 ACAGTTTGAATGATGCCTCCTC 58.649 45.455 0.00 0.00 0.00 3.71
4321 6444 3.245016 ACAGTTTGAATGATGCCTCCTCA 60.245 43.478 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.693042 TCATACATGTCAGCATCATCCA 57.307 40.909 0.00 0.00 31.99 3.41
12 13 4.053295 CGACATCATACATGTCAGCATCA 58.947 43.478 0.00 0.00 46.38 3.07
17 18 4.864247 TGAACACGACATCATACATGTCAG 59.136 41.667 0.00 8.46 46.38 3.51
24 25 4.327357 CCAAGAGTGAACACGACATCATAC 59.673 45.833 0.00 0.00 36.20 2.39
177 182 1.096416 CCACGGACACCTAGAGAGTC 58.904 60.000 0.00 0.00 0.00 3.36
178 183 0.323542 CCCACGGACACCTAGAGAGT 60.324 60.000 0.00 0.00 0.00 3.24
226 233 0.668535 GACCCTCCACACAGTTTTGC 59.331 55.000 0.00 0.00 0.00 3.68
295 304 1.303236 TATGCAAGGTTGGCGCTGT 60.303 52.632 7.64 0.00 0.00 4.40
319 329 1.567504 CGGGAATAAACGAGCGACAT 58.432 50.000 0.00 0.00 0.00 3.06
382 393 0.379669 GCCACATGAAGATCCAAGCG 59.620 55.000 0.00 0.00 0.00 4.68
418 429 3.563808 GCAACCAATGACTGAGTACACAA 59.436 43.478 0.00 0.00 0.00 3.33
441 453 3.975035 GCAAGCGTTTTGACTTAAAGGAG 59.025 43.478 6.06 0.00 0.00 3.69
469 481 1.732259 GCGACATCGTCACCAATTCTT 59.268 47.619 2.85 0.00 42.22 2.52
486 498 2.553602 TGACGAGTTTGTACCTTAGCGA 59.446 45.455 0.00 0.00 0.00 4.93
681 2280 7.492344 CCATAAGTACAAAATTTTCTGGATGGC 59.508 37.037 0.00 0.00 0.00 4.40
682 2281 8.531146 ACCATAAGTACAAAATTTTCTGGATGG 58.469 33.333 19.00 19.00 34.95 3.51
694 2293 9.199982 CGTCTTTCTTCTACCATAAGTACAAAA 57.800 33.333 0.00 0.00 0.00 2.44
695 2294 8.579006 TCGTCTTTCTTCTACCATAAGTACAAA 58.421 33.333 0.00 0.00 0.00 2.83
696 2295 8.114331 TCGTCTTTCTTCTACCATAAGTACAA 57.886 34.615 0.00 0.00 0.00 2.41
778 2377 4.018609 CGATCAATCGCCTCGCTT 57.981 55.556 0.00 0.00 43.84 4.68
835 2434 1.071019 AGCTCGTCGTATGCGTGTTG 61.071 55.000 2.37 0.00 39.49 3.33
1056 2664 0.336737 GAGAGGGAGGGAGAGGTCAA 59.663 60.000 0.00 0.00 0.00 3.18
1088 2696 4.407296 ACCCAACAAATTTGCACTAGGAAA 59.593 37.500 18.12 0.00 39.46 3.13
1151 2759 1.808411 ACTGACCAATAGTTGCCGTG 58.192 50.000 0.00 0.00 0.00 4.94
1158 2766 1.404391 CGACGGCTACTGACCAATAGT 59.596 52.381 0.00 0.00 0.00 2.12
1179 2787 5.235305 ACTAGCAAAATTACCAAGATGCG 57.765 39.130 0.00 0.00 38.74 4.73
1276 2886 1.153901 GCAGTACGCTCGCCTTACA 60.154 57.895 2.99 0.00 37.77 2.41
1283 2893 1.802300 GCAATCTCGCAGTACGCTCG 61.802 60.000 7.82 3.72 43.23 5.03
1304 2914 5.413213 CACCTGTTTATCCGGACAACATTTA 59.587 40.000 24.53 3.32 30.18 1.40
1375 3119 8.090214 GGTGGTGTTTGTACTTTGTAGAGTATA 58.910 37.037 0.00 0.00 34.84 1.47
1397 3141 3.009723 CCACATGTAGCTAAACTGGTGG 58.990 50.000 13.83 13.83 37.67 4.61
1413 3157 7.769970 CCAAATTATAAATTCAGGCAACCACAT 59.230 33.333 0.00 0.00 37.17 3.21
1454 3199 0.759346 AGCTGTTCCTTCCTTCACGT 59.241 50.000 0.00 0.00 0.00 4.49
1469 3214 0.911525 TCCTTCCTTCCCTCCAGCTG 60.912 60.000 6.78 6.78 0.00 4.24
1472 3217 0.620121 AGCTCCTTCCTTCCCTCCAG 60.620 60.000 0.00 0.00 0.00 3.86
1525 3354 1.123077 AGATAATGAGGTCGCCTGCA 58.877 50.000 2.98 0.00 31.76 4.41
1713 3557 2.435069 TCTTCAACCTCAAACCGGTACA 59.565 45.455 8.00 0.00 33.53 2.90
1838 3693 2.433662 TCCGAATCATGCATTTGGGA 57.566 45.000 9.97 9.97 44.12 4.37
2304 4179 1.146041 AGCACGCCAAGAGTGACAA 59.854 52.632 2.50 0.00 41.83 3.18
2387 4262 1.217882 CCGATTAGCCTTACGCCAAG 58.782 55.000 0.00 0.00 38.78 3.61
2390 4265 0.320697 ATCCCGATTAGCCTTACGCC 59.679 55.000 0.00 0.00 38.78 5.68
2706 4590 3.196254 GCCACTGGAACATGGATGATTTT 59.804 43.478 0.00 0.00 38.62 1.82
2729 4613 2.299013 GTCCAGGAATTTGTTCCAACCC 59.701 50.000 9.63 0.00 43.54 4.11
2778 4668 9.101655 CCTTTGAACAAAACAATCTGAAGAAAT 57.898 29.630 1.76 0.00 0.00 2.17
2782 4672 7.035004 TGACCTTTGAACAAAACAATCTGAAG 58.965 34.615 1.76 0.00 0.00 3.02
2826 4716 1.098712 TGGTTTTGAGCGTGTGGGTC 61.099 55.000 0.00 0.00 43.52 4.46
2827 4717 0.467290 ATGGTTTTGAGCGTGTGGGT 60.467 50.000 0.00 0.00 0.00 4.51
2868 4758 1.202639 ACAACATCGACTTCCTGCACA 60.203 47.619 0.00 0.00 0.00 4.57
2902 4795 5.295431 TCATAATTCAAGCCAACAACGAG 57.705 39.130 0.00 0.00 0.00 4.18
3009 4914 1.806542 TCGGCTGAAGAATCAAAGTGC 59.193 47.619 0.00 0.00 34.49 4.40
3011 4916 2.814336 GGTTCGGCTGAAGAATCAAAGT 59.186 45.455 8.61 0.00 34.49 2.66
3102 5007 4.344679 TCAGGGTTCATGCAAGAAAATGTT 59.655 37.500 5.85 0.00 0.00 2.71
3399 5381 0.035630 ATCACTGGCTGGAGCTCAAC 60.036 55.000 17.19 3.55 41.70 3.18
3446 5483 4.971830 GGAACACACATGCATGAATAATCG 59.028 41.667 32.75 14.74 0.00 3.34
3461 5498 2.415090 GCATGCAGATCAAGGAACACAC 60.415 50.000 14.21 0.00 0.00 3.82
3481 5518 1.751927 CCAAGGAGAGGCACATGGC 60.752 63.158 0.00 0.00 43.74 4.40
3498 5581 3.229697 ACTATGCCCTCCATTAAAGCC 57.770 47.619 0.00 0.00 35.34 4.35
3511 5594 5.899299 AGCATCATTTTTCTGAACTATGCC 58.101 37.500 13.45 4.43 31.05 4.40
3563 5663 3.709653 ACGGAGGGAGTAGATTGCATTTA 59.290 43.478 0.00 0.00 0.00 1.40
3564 5664 2.505819 ACGGAGGGAGTAGATTGCATTT 59.494 45.455 0.00 0.00 0.00 2.32
3565 5665 2.119495 ACGGAGGGAGTAGATTGCATT 58.881 47.619 0.00 0.00 0.00 3.56
3567 5667 1.480954 GAACGGAGGGAGTAGATTGCA 59.519 52.381 0.00 0.00 0.00 4.08
3568 5668 1.202545 GGAACGGAGGGAGTAGATTGC 60.203 57.143 0.00 0.00 0.00 3.56
3573 5673 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
3574 5674 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3576 5676 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3579 5679 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3596 5696 8.787852 GTCCATCTGAAATGTCTAAAAAGACTT 58.212 33.333 7.04 0.00 39.41 3.01
3597 5697 8.160106 AGTCCATCTGAAATGTCTAAAAAGACT 58.840 33.333 7.04 0.00 39.41 3.24
3598 5698 8.329203 AGTCCATCTGAAATGTCTAAAAAGAC 57.671 34.615 0.00 0.00 39.15 3.01
3606 5706 9.988815 GTATGTTATAGTCCATCTGAAATGTCT 57.011 33.333 0.00 0.00 0.00 3.41
3607 5707 8.916654 CGTATGTTATAGTCCATCTGAAATGTC 58.083 37.037 0.00 0.00 0.00 3.06
3608 5708 7.872993 CCGTATGTTATAGTCCATCTGAAATGT 59.127 37.037 0.00 0.00 0.00 2.71
3609 5709 8.088365 TCCGTATGTTATAGTCCATCTGAAATG 58.912 37.037 0.00 0.00 0.00 2.32
3610 5710 8.190326 TCCGTATGTTATAGTCCATCTGAAAT 57.810 34.615 0.00 0.00 0.00 2.17
3611 5711 7.591421 TCCGTATGTTATAGTCCATCTGAAA 57.409 36.000 0.00 0.00 0.00 2.69
3612 5712 7.232737 ACATCCGTATGTTATAGTCCATCTGAA 59.767 37.037 0.00 0.00 44.07 3.02
3613 5713 6.719829 ACATCCGTATGTTATAGTCCATCTGA 59.280 38.462 0.00 0.00 44.07 3.27
3614 5714 6.925211 ACATCCGTATGTTATAGTCCATCTG 58.075 40.000 0.00 0.00 44.07 2.90
3615 5715 8.687242 CATACATCCGTATGTTATAGTCCATCT 58.313 37.037 0.00 0.00 46.70 2.90
3616 5716 8.858003 CATACATCCGTATGTTATAGTCCATC 57.142 38.462 0.00 0.00 46.70 3.51
3657 5757 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3658 5758 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3659 5759 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3660 5760 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3661 5761 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3662 5762 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3663 5763 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3664 5764 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3665 5765 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3666 5766 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3667 5767 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3668 5768 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3669 5769 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3670 5770 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3671 5771 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3672 5772 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3673 5773 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3674 5774 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3675 5775 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3676 5776 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3677 5777 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3678 5778 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3679 5779 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3680 5780 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3681 5781 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3683 5783 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
3684 5784 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
3687 5787 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
3688 5788 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
3689 5789 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
3719 5819 8.033626 CCAGTAGTACTTTCTTCGTTCCTAAAT 58.966 37.037 0.00 0.00 0.00 1.40
3720 5820 7.014615 ACCAGTAGTACTTTCTTCGTTCCTAAA 59.985 37.037 0.00 0.00 0.00 1.85
3721 5821 6.491403 ACCAGTAGTACTTTCTTCGTTCCTAA 59.509 38.462 0.00 0.00 0.00 2.69
3722 5822 6.006449 ACCAGTAGTACTTTCTTCGTTCCTA 58.994 40.000 0.00 0.00 0.00 2.94
3723 5823 4.831710 ACCAGTAGTACTTTCTTCGTTCCT 59.168 41.667 0.00 0.00 0.00 3.36
3724 5824 5.131594 ACCAGTAGTACTTTCTTCGTTCC 57.868 43.478 0.00 0.00 0.00 3.62
3725 5825 6.307558 GCTAACCAGTAGTACTTTCTTCGTTC 59.692 42.308 0.00 0.00 31.78 3.95
3726 5826 6.155136 GCTAACCAGTAGTACTTTCTTCGTT 58.845 40.000 0.00 7.68 31.78 3.85
3727 5827 5.242393 TGCTAACCAGTAGTACTTTCTTCGT 59.758 40.000 0.00 0.00 31.78 3.85
3728 5828 5.706916 TGCTAACCAGTAGTACTTTCTTCG 58.293 41.667 0.00 0.00 31.78 3.79
3729 5829 5.577554 GCTGCTAACCAGTAGTACTTTCTTC 59.422 44.000 0.00 0.00 43.71 2.87
3730 5830 5.480205 GCTGCTAACCAGTAGTACTTTCTT 58.520 41.667 0.00 0.00 43.71 2.52
3731 5831 4.081586 GGCTGCTAACCAGTAGTACTTTCT 60.082 45.833 0.00 0.00 43.71 2.52
3732 5832 4.182339 GGCTGCTAACCAGTAGTACTTTC 58.818 47.826 0.00 0.00 43.71 2.62
3733 5833 3.055312 GGGCTGCTAACCAGTAGTACTTT 60.055 47.826 0.00 0.00 43.71 2.66
3734 5834 2.500504 GGGCTGCTAACCAGTAGTACTT 59.499 50.000 0.00 0.00 43.71 2.24
3735 5835 2.108970 GGGCTGCTAACCAGTAGTACT 58.891 52.381 0.00 0.00 43.71 2.73
3736 5836 2.101082 GAGGGCTGCTAACCAGTAGTAC 59.899 54.545 0.00 0.00 43.71 2.73
3745 5845 2.019984 CAATCCAAGAGGGCTGCTAAC 58.980 52.381 0.00 0.00 36.21 2.34
3750 5850 2.425143 TAAGCAATCCAAGAGGGCTG 57.575 50.000 0.00 0.00 34.56 4.85
3753 5853 8.912988 TGTTTATTAATAAGCAATCCAAGAGGG 58.087 33.333 18.92 0.00 31.86 4.30
3775 5875 7.057894 TGAAAGTAGAACCCAGTGTATTGTTT 58.942 34.615 0.00 0.00 0.00 2.83
3778 5878 6.655003 ACATGAAAGTAGAACCCAGTGTATTG 59.345 38.462 0.00 0.00 0.00 1.90
3781 5881 5.305902 TGACATGAAAGTAGAACCCAGTGTA 59.694 40.000 0.00 0.00 0.00 2.90
3783 5883 4.452455 GTGACATGAAAGTAGAACCCAGTG 59.548 45.833 0.00 0.00 0.00 3.66
3784 5884 4.642429 GTGACATGAAAGTAGAACCCAGT 58.358 43.478 0.00 0.00 0.00 4.00
3785 5885 3.679980 CGTGACATGAAAGTAGAACCCAG 59.320 47.826 0.00 0.00 0.00 4.45
3786 5886 3.322541 TCGTGACATGAAAGTAGAACCCA 59.677 43.478 0.00 0.00 0.00 4.51
3787 5887 3.678548 GTCGTGACATGAAAGTAGAACCC 59.321 47.826 0.00 0.00 0.00 4.11
3788 5894 4.304110 TGTCGTGACATGAAAGTAGAACC 58.696 43.478 0.00 0.00 36.21 3.62
3796 5902 4.699637 AGTTACCTTGTCGTGACATGAAA 58.300 39.130 15.20 7.96 41.52 2.69
3805 5911 6.380095 TGCAAATTTAAGTTACCTTGTCGT 57.620 33.333 0.00 0.00 31.89 4.34
3817 5923 8.949953 CAAAAGAAACAATGCTGCAAATTTAAG 58.050 29.630 6.36 0.00 0.00 1.85
3818 5924 8.671921 TCAAAAGAAACAATGCTGCAAATTTAA 58.328 25.926 6.36 0.00 0.00 1.52
3855 5962 3.628017 AGGCAAATTTTCGTCAAACTCG 58.372 40.909 0.00 0.00 0.00 4.18
3883 5990 2.359981 GGGGGAAATACCAGCCTAAC 57.640 55.000 0.00 0.00 41.20 2.34
3920 6027 9.865321 CATCCTTGATGACAAAAGATTACAAAT 57.135 29.630 0.00 0.00 42.09 2.32
3924 6031 9.565213 CTTTCATCCTTGATGACAAAAGATTAC 57.435 33.333 6.28 0.00 46.87 1.89
3933 6040 6.058553 ACATCTCTTTCATCCTTGATGACA 57.941 37.500 6.28 0.01 46.87 3.58
3941 6048 5.511386 AGGACAAACATCTCTTTCATCCT 57.489 39.130 0.00 0.00 0.00 3.24
3961 6068 4.741321 TGGTATGTCCCTAAACGTTAGG 57.259 45.455 0.00 8.89 34.77 2.69
3962 6069 5.727434 AGTTGGTATGTCCCTAAACGTTAG 58.273 41.667 0.00 0.00 34.77 2.34
3963 6070 5.245751 TGAGTTGGTATGTCCCTAAACGTTA 59.754 40.000 0.00 0.00 34.77 3.18
3964 6071 4.040706 TGAGTTGGTATGTCCCTAAACGTT 59.959 41.667 0.00 0.00 34.77 3.99
3966 6073 3.930848 GTGAGTTGGTATGTCCCTAAACG 59.069 47.826 0.00 0.00 34.77 3.60
3967 6074 4.901868 TGTGAGTTGGTATGTCCCTAAAC 58.098 43.478 0.00 0.00 34.77 2.01
3971 6078 1.909302 CCTGTGAGTTGGTATGTCCCT 59.091 52.381 0.00 0.00 34.77 4.20
3973 6080 3.695830 TTCCTGTGAGTTGGTATGTCC 57.304 47.619 0.00 0.00 0.00 4.02
3974 6081 5.940470 AGATTTTCCTGTGAGTTGGTATGTC 59.060 40.000 0.00 0.00 0.00 3.06
3975 6082 5.880901 AGATTTTCCTGTGAGTTGGTATGT 58.119 37.500 0.00 0.00 0.00 2.29
3976 6083 5.939883 TGAGATTTTCCTGTGAGTTGGTATG 59.060 40.000 0.00 0.00 0.00 2.39
3977 6084 6.126863 TGAGATTTTCCTGTGAGTTGGTAT 57.873 37.500 0.00 0.00 0.00 2.73
3978 6085 5.560722 TGAGATTTTCCTGTGAGTTGGTA 57.439 39.130 0.00 0.00 0.00 3.25
3979 6086 4.437682 TGAGATTTTCCTGTGAGTTGGT 57.562 40.909 0.00 0.00 0.00 3.67
3980 6087 5.772825 TTTGAGATTTTCCTGTGAGTTGG 57.227 39.130 0.00 0.00 0.00 3.77
3981 6088 7.483307 TCTTTTTGAGATTTTCCTGTGAGTTG 58.517 34.615 0.00 0.00 0.00 3.16
3990 6097 8.599055 AAAGCTTCATCTTTTTGAGATTTTCC 57.401 30.769 0.00 0.00 42.55 3.13
3996 6103 9.561069 AACTAGTAAAGCTTCATCTTTTTGAGA 57.439 29.630 0.00 0.00 37.46 3.27
4039 6162 9.450807 CAAAACTAACACCTTGATTTTCTGTAG 57.549 33.333 0.00 0.00 0.00 2.74
4107 6230 2.426024 TGCTTAGGTCGTAGTAGCAAGG 59.574 50.000 0.00 0.00 38.76 3.61
4108 6231 3.696898 CTGCTTAGGTCGTAGTAGCAAG 58.303 50.000 0.00 0.00 40.90 4.01
4109 6232 2.159282 GCTGCTTAGGTCGTAGTAGCAA 60.159 50.000 7.21 0.00 45.68 3.91
4110 6233 1.404391 GCTGCTTAGGTCGTAGTAGCA 59.596 52.381 7.21 0.00 45.68 3.49
4111 6234 1.597445 CGCTGCTTAGGTCGTAGTAGC 60.597 57.143 0.00 0.00 43.79 3.58
4112 6235 1.669779 ACGCTGCTTAGGTCGTAGTAG 59.330 52.381 0.00 0.00 33.02 2.57
4113 6236 1.399440 CACGCTGCTTAGGTCGTAGTA 59.601 52.381 0.00 0.00 33.51 1.82
4114 6237 0.170561 CACGCTGCTTAGGTCGTAGT 59.829 55.000 0.00 0.00 33.51 2.73
4115 6238 0.170561 ACACGCTGCTTAGGTCGTAG 59.829 55.000 0.00 0.00 33.51 3.51
4116 6239 0.169672 GACACGCTGCTTAGGTCGTA 59.830 55.000 0.00 0.00 33.51 3.43
4117 6240 1.080705 GACACGCTGCTTAGGTCGT 60.081 57.895 0.00 0.00 35.35 4.34
4118 6241 0.458543 ATGACACGCTGCTTAGGTCG 60.459 55.000 0.00 0.00 0.00 4.79
4119 6242 1.726853 AATGACACGCTGCTTAGGTC 58.273 50.000 0.00 0.78 0.00 3.85
4120 6243 1.806542 CAAATGACACGCTGCTTAGGT 59.193 47.619 0.00 0.00 0.00 3.08
4121 6244 2.076100 TCAAATGACACGCTGCTTAGG 58.924 47.619 0.00 0.00 0.00 2.69
4122 6245 2.738846 ACTCAAATGACACGCTGCTTAG 59.261 45.455 0.00 0.00 0.00 2.18
4123 6246 2.766313 ACTCAAATGACACGCTGCTTA 58.234 42.857 0.00 0.00 0.00 3.09
4124 6247 1.597742 ACTCAAATGACACGCTGCTT 58.402 45.000 0.00 0.00 0.00 3.91
4125 6248 2.455674 TACTCAAATGACACGCTGCT 57.544 45.000 0.00 0.00 0.00 4.24
4126 6249 3.536158 TTTACTCAAATGACACGCTGC 57.464 42.857 0.00 0.00 0.00 5.25
4136 6259 6.112927 ACCACCAATGCATTTTACTCAAAT 57.887 33.333 9.83 0.00 35.24 2.32
4137 6260 5.069648 TGACCACCAATGCATTTTACTCAAA 59.930 36.000 9.83 0.00 0.00 2.69
4138 6261 4.586421 TGACCACCAATGCATTTTACTCAA 59.414 37.500 9.83 0.00 0.00 3.02
4139 6262 4.022416 GTGACCACCAATGCATTTTACTCA 60.022 41.667 9.83 4.50 0.00 3.41
4140 6263 4.218417 AGTGACCACCAATGCATTTTACTC 59.782 41.667 9.83 1.88 0.00 2.59
4141 6264 4.151883 AGTGACCACCAATGCATTTTACT 58.848 39.130 9.83 4.46 0.00 2.24
4142 6265 4.519540 AGTGACCACCAATGCATTTTAC 57.480 40.909 9.83 1.99 0.00 2.01
4143 6266 5.414454 GTCTAGTGACCACCAATGCATTTTA 59.586 40.000 9.83 0.00 37.24 1.52
4144 6267 4.218417 GTCTAGTGACCACCAATGCATTTT 59.782 41.667 9.83 0.00 37.24 1.82
4145 6268 3.758554 GTCTAGTGACCACCAATGCATTT 59.241 43.478 9.83 0.00 37.24 2.32
4146 6269 3.009473 AGTCTAGTGACCACCAATGCATT 59.991 43.478 5.99 5.99 43.91 3.56
4147 6270 2.573462 AGTCTAGTGACCACCAATGCAT 59.427 45.455 0.00 0.00 43.91 3.96
4148 6271 1.977854 AGTCTAGTGACCACCAATGCA 59.022 47.619 0.00 0.00 43.91 3.96
4149 6272 2.744202 CAAGTCTAGTGACCACCAATGC 59.256 50.000 0.00 0.00 43.91 3.56
4150 6273 3.997021 GACAAGTCTAGTGACCACCAATG 59.003 47.826 0.00 0.00 43.91 2.82
4151 6274 3.306088 CGACAAGTCTAGTGACCACCAAT 60.306 47.826 0.00 0.00 43.91 3.16
4152 6275 2.035449 CGACAAGTCTAGTGACCACCAA 59.965 50.000 0.00 0.00 43.91 3.67
4153 6276 1.611977 CGACAAGTCTAGTGACCACCA 59.388 52.381 0.00 0.00 43.91 4.17
4154 6277 1.612463 ACGACAAGTCTAGTGACCACC 59.388 52.381 0.00 0.00 43.91 4.61
4155 6278 2.034305 ACACGACAAGTCTAGTGACCAC 59.966 50.000 12.93 0.00 43.91 4.16
4156 6279 2.292569 GACACGACAAGTCTAGTGACCA 59.707 50.000 12.93 0.00 43.91 4.02
4157 6280 2.351544 GGACACGACAAGTCTAGTGACC 60.352 54.545 12.93 12.13 43.91 4.02
4158 6281 2.664971 CGGACACGACAAGTCTAGTGAC 60.665 54.545 12.93 8.10 44.60 3.67
4159 6282 1.534163 CGGACACGACAAGTCTAGTGA 59.466 52.381 12.93 0.00 44.60 3.41
4160 6283 1.266175 ACGGACACGACAAGTCTAGTG 59.734 52.381 0.00 6.67 44.60 2.74
4161 6284 1.602311 ACGGACACGACAAGTCTAGT 58.398 50.000 0.00 0.00 44.60 2.57
4162 6285 2.031420 TGAACGGACACGACAAGTCTAG 60.031 50.000 0.00 0.00 44.60 2.43
4163 6286 1.948834 TGAACGGACACGACAAGTCTA 59.051 47.619 0.00 0.00 44.60 2.59
4164 6287 0.742505 TGAACGGACACGACAAGTCT 59.257 50.000 0.00 0.00 44.60 3.24
4165 6288 1.129326 CTGAACGGACACGACAAGTC 58.871 55.000 0.00 0.00 44.60 3.01
4166 6289 0.458669 ACTGAACGGACACGACAAGT 59.541 50.000 0.00 0.00 44.60 3.16
4167 6290 1.567504 AACTGAACGGACACGACAAG 58.432 50.000 0.00 0.00 44.60 3.16
4168 6291 1.661617 CAAACTGAACGGACACGACAA 59.338 47.619 0.00 0.00 44.60 3.18
4169 6292 1.282817 CAAACTGAACGGACACGACA 58.717 50.000 0.00 0.00 44.60 4.35
4170 6293 0.580104 CCAAACTGAACGGACACGAC 59.420 55.000 0.00 0.00 44.60 4.34
4171 6294 0.176219 ACCAAACTGAACGGACACGA 59.824 50.000 0.00 0.00 44.60 4.35
4173 6296 1.329599 GTGACCAAACTGAACGGACAC 59.670 52.381 0.00 0.00 38.07 3.67
4174 6297 1.208535 AGTGACCAAACTGAACGGACA 59.791 47.619 0.00 0.00 0.00 4.02
4175 6298 1.949465 AGTGACCAAACTGAACGGAC 58.051 50.000 0.00 0.00 0.00 4.79
4183 6306 7.554835 TGTATTTTTGAGTACAGTGACCAAACT 59.445 33.333 0.00 0.00 0.00 2.66
4184 6307 7.699566 TGTATTTTTGAGTACAGTGACCAAAC 58.300 34.615 0.00 0.00 0.00 2.93
4185 6308 7.867305 TGTATTTTTGAGTACAGTGACCAAA 57.133 32.000 0.00 0.00 0.00 3.28
4186 6309 7.490962 CTGTATTTTTGAGTACAGTGACCAA 57.509 36.000 0.00 0.00 41.67 3.67
4207 6330 9.745880 CTCGTATTTAGTGACCATATTAACTGT 57.254 33.333 0.00 0.00 0.00 3.55
4208 6331 9.745880 ACTCGTATTTAGTGACCATATTAACTG 57.254 33.333 0.00 0.00 0.00 3.16
4212 6335 9.524106 CACAACTCGTATTTAGTGACCATATTA 57.476 33.333 0.00 0.00 0.00 0.98
4213 6336 7.494625 CCACAACTCGTATTTAGTGACCATATT 59.505 37.037 0.00 0.00 0.00 1.28
4214 6337 6.984474 CCACAACTCGTATTTAGTGACCATAT 59.016 38.462 0.00 0.00 0.00 1.78
4215 6338 6.071221 ACCACAACTCGTATTTAGTGACCATA 60.071 38.462 0.00 0.00 0.00 2.74
4216 6339 5.175859 CCACAACTCGTATTTAGTGACCAT 58.824 41.667 0.00 0.00 0.00 3.55
4217 6340 4.039488 ACCACAACTCGTATTTAGTGACCA 59.961 41.667 0.00 0.00 0.00 4.02
4218 6341 4.387862 CACCACAACTCGTATTTAGTGACC 59.612 45.833 0.00 0.00 0.00 4.02
4219 6342 5.224888 TCACCACAACTCGTATTTAGTGAC 58.775 41.667 0.00 0.00 0.00 3.67
4220 6343 5.456548 TCACCACAACTCGTATTTAGTGA 57.543 39.130 0.00 0.00 0.00 3.41
4221 6344 6.721571 AATCACCACAACTCGTATTTAGTG 57.278 37.500 0.00 0.00 0.00 2.74
4222 6345 9.525409 GTATAATCACCACAACTCGTATTTAGT 57.475 33.333 0.00 0.00 0.00 2.24
4223 6346 8.688184 CGTATAATCACCACAACTCGTATTTAG 58.312 37.037 0.00 0.00 0.00 1.85
4224 6347 7.648908 CCGTATAATCACCACAACTCGTATTTA 59.351 37.037 0.00 0.00 0.00 1.40
4225 6348 6.477688 CCGTATAATCACCACAACTCGTATTT 59.522 38.462 0.00 0.00 0.00 1.40
4226 6349 5.981315 CCGTATAATCACCACAACTCGTATT 59.019 40.000 0.00 0.00 0.00 1.89
4227 6350 5.068198 ACCGTATAATCACCACAACTCGTAT 59.932 40.000 0.00 0.00 0.00 3.06
4228 6351 4.398988 ACCGTATAATCACCACAACTCGTA 59.601 41.667 0.00 0.00 0.00 3.43
4229 6352 3.194116 ACCGTATAATCACCACAACTCGT 59.806 43.478 0.00 0.00 0.00 4.18
4230 6353 3.777478 ACCGTATAATCACCACAACTCG 58.223 45.455 0.00 0.00 0.00 4.18
4231 6354 4.565564 GTGACCGTATAATCACCACAACTC 59.434 45.833 0.00 0.00 39.49 3.01
4232 6355 4.222145 AGTGACCGTATAATCACCACAACT 59.778 41.667 8.65 0.00 45.28 3.16
4233 6356 4.328983 CAGTGACCGTATAATCACCACAAC 59.671 45.833 8.65 0.00 45.28 3.32
4234 6357 4.020928 ACAGTGACCGTATAATCACCACAA 60.021 41.667 0.00 0.00 45.28 3.33
4235 6358 3.512329 ACAGTGACCGTATAATCACCACA 59.488 43.478 0.00 0.00 45.28 4.17
4236 6359 4.110482 GACAGTGACCGTATAATCACCAC 58.890 47.826 0.00 0.00 45.28 4.16
4237 6360 3.764972 TGACAGTGACCGTATAATCACCA 59.235 43.478 0.00 0.47 45.28 4.17
4238 6361 4.110482 GTGACAGTGACCGTATAATCACC 58.890 47.826 0.00 0.00 45.28 4.02
4239 6362 4.740268 TGTGACAGTGACCGTATAATCAC 58.260 43.478 0.00 0.00 44.64 3.06
4240 6363 5.588240 GATGTGACAGTGACCGTATAATCA 58.412 41.667 0.00 0.00 0.00 2.57
4241 6364 4.675565 CGATGTGACAGTGACCGTATAATC 59.324 45.833 0.00 0.00 0.00 1.75
4242 6365 4.097437 ACGATGTGACAGTGACCGTATAAT 59.903 41.667 0.00 0.00 0.00 1.28
4243 6366 3.441222 ACGATGTGACAGTGACCGTATAA 59.559 43.478 0.00 0.00 0.00 0.98
4244 6367 3.011818 ACGATGTGACAGTGACCGTATA 58.988 45.455 0.00 0.00 0.00 1.47
4245 6368 1.816835 ACGATGTGACAGTGACCGTAT 59.183 47.619 0.00 0.00 0.00 3.06
4246 6369 1.241165 ACGATGTGACAGTGACCGTA 58.759 50.000 0.00 0.00 0.00 4.02
4247 6370 1.241165 TACGATGTGACAGTGACCGT 58.759 50.000 0.00 0.00 0.00 4.83
4248 6371 2.561733 ATACGATGTGACAGTGACCG 57.438 50.000 0.00 0.00 0.00 4.79
4249 6372 5.440234 AGATATACGATGTGACAGTGACC 57.560 43.478 0.00 0.00 0.00 4.02
4250 6373 5.621634 CGAAGATATACGATGTGACAGTGAC 59.378 44.000 0.00 0.00 0.00 3.67
4251 6374 5.296035 ACGAAGATATACGATGTGACAGTGA 59.704 40.000 0.00 0.00 0.00 3.41
4252 6375 5.511571 ACGAAGATATACGATGTGACAGTG 58.488 41.667 0.00 0.00 0.00 3.66
4253 6376 5.752892 ACGAAGATATACGATGTGACAGT 57.247 39.130 0.00 0.00 0.00 3.55
4254 6377 8.729529 AAATACGAAGATATACGATGTGACAG 57.270 34.615 0.00 0.00 0.00 3.51
4255 6378 8.964150 CAAAATACGAAGATATACGATGTGACA 58.036 33.333 0.00 0.00 0.00 3.58
4256 6379 8.965172 ACAAAATACGAAGATATACGATGTGAC 58.035 33.333 0.00 0.00 0.00 3.67
4257 6380 9.524106 AACAAAATACGAAGATATACGATGTGA 57.476 29.630 0.00 0.00 0.00 3.58
4258 6381 9.567917 CAACAAAATACGAAGATATACGATGTG 57.432 33.333 0.00 0.00 0.00 3.21
4259 6382 9.524106 TCAACAAAATACGAAGATATACGATGT 57.476 29.630 0.00 0.00 0.00 3.06
4260 6383 9.995379 CTCAACAAAATACGAAGATATACGATG 57.005 33.333 0.00 0.00 0.00 3.84
4261 6384 9.745880 ACTCAACAAAATACGAAGATATACGAT 57.254 29.630 0.00 0.00 0.00 3.73
4262 6385 9.577110 AACTCAACAAAATACGAAGATATACGA 57.423 29.630 0.00 0.00 0.00 3.43
4263 6386 9.619727 CAACTCAACAAAATACGAAGATATACG 57.380 33.333 0.00 0.00 0.00 3.06
4266 6389 9.436957 AGTCAACTCAACAAAATACGAAGATAT 57.563 29.630 0.00 0.00 0.00 1.63
4267 6390 8.827177 AGTCAACTCAACAAAATACGAAGATA 57.173 30.769 0.00 0.00 0.00 1.98
4268 6391 7.730364 AGTCAACTCAACAAAATACGAAGAT 57.270 32.000 0.00 0.00 0.00 2.40
4269 6392 7.924412 ACTAGTCAACTCAACAAAATACGAAGA 59.076 33.333 0.00 0.00 0.00 2.87
4270 6393 8.073355 ACTAGTCAACTCAACAAAATACGAAG 57.927 34.615 0.00 0.00 0.00 3.79
4271 6394 7.707464 TGACTAGTCAACTCAACAAAATACGAA 59.293 33.333 23.24 0.00 36.53 3.85
4272 6395 7.204604 TGACTAGTCAACTCAACAAAATACGA 58.795 34.615 23.24 0.00 36.53 3.43
4273 6396 7.402811 TGACTAGTCAACTCAACAAAATACG 57.597 36.000 23.24 0.00 36.53 3.06
4296 6419 4.021719 AGGAGGCATCATTCAAACTGTTTG 60.022 41.667 23.72 23.72 41.96 2.93
4297 6420 4.154942 AGGAGGCATCATTCAAACTGTTT 58.845 39.130 0.00 0.00 0.00 2.83
4298 6421 3.760684 GAGGAGGCATCATTCAAACTGTT 59.239 43.478 0.00 0.00 0.00 3.16
4299 6422 3.245016 TGAGGAGGCATCATTCAAACTGT 60.245 43.478 0.00 0.00 0.00 3.55
4300 6423 3.349927 TGAGGAGGCATCATTCAAACTG 58.650 45.455 0.00 0.00 0.00 3.16
4301 6424 3.726557 TGAGGAGGCATCATTCAAACT 57.273 42.857 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.