Multiple sequence alignment - TraesCS2D01G142900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G142900 chr2D 100.000 3353 0 0 1 3353 84340130 84343482 0.000000e+00 6192
1 TraesCS2D01G142900 chr2B 94.310 2636 98 19 743 3347 136429324 136431938 0.000000e+00 3989
2 TraesCS2D01G142900 chr2B 83.498 303 45 5 409 709 150435307 150435606 9.160000e-71 278
3 TraesCS2D01G142900 chr2B 89.375 160 12 5 400 556 139444390 139444547 2.640000e-46 196
4 TraesCS2D01G142900 chr2A 92.193 2357 116 26 737 3081 85287580 85289880 0.000000e+00 3271
5 TraesCS2D01G142900 chr2A 92.179 179 9 4 3170 3347 85289924 85290098 7.180000e-62 248
6 TraesCS2D01G142900 chr7B 86.275 306 36 6 404 705 637198441 637198138 8.970000e-86 327
7 TraesCS2D01G142900 chr5A 84.437 302 40 6 404 701 465123684 465123386 1.180000e-74 291
8 TraesCS2D01G142900 chr5A 90.667 150 13 1 558 706 26117344 26117493 7.340000e-47 198
9 TraesCS2D01G142900 chr6A 82.686 283 42 5 404 682 430324497 430324776 9.290000e-61 244
10 TraesCS2D01G142900 chr4A 91.195 159 12 2 559 715 682754771 682754613 7.290000e-52 215
11 TraesCS2D01G142900 chrUn 90.566 159 13 2 549 705 52138893 52139051 3.390000e-50 209
12 TraesCS2D01G142900 chr4B 89.873 158 13 3 400 556 289808867 289808712 2.040000e-47 200
13 TraesCS2D01G142900 chr4B 90.604 149 12 2 409 556 536577361 536577508 2.640000e-46 196
14 TraesCS2D01G142900 chr1B 90.604 149 13 1 558 705 657167650 657167798 2.640000e-46 196
15 TraesCS2D01G142900 chr1B 88.608 158 16 2 407 563 504521515 504521359 1.230000e-44 191
16 TraesCS2D01G142900 chr6B 90.541 148 13 1 558 704 140098029 140097882 9.490000e-46 195
17 TraesCS2D01G142900 chr5B 90.066 151 13 2 407 556 529277067 529277216 9.490000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G142900 chr2D 84340130 84343482 3352 False 6192.0 6192 100.000 1 3353 1 chr2D.!!$F1 3352
1 TraesCS2D01G142900 chr2B 136429324 136431938 2614 False 3989.0 3989 94.310 743 3347 1 chr2B.!!$F1 2604
2 TraesCS2D01G142900 chr2A 85287580 85290098 2518 False 1759.5 3271 92.186 737 3347 2 chr2A.!!$F1 2610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.035739 TTAGACCCTGTTCGGCAACC 59.964 55.0 0.00 0.00 0.00 3.77 F
239 240 0.035915 GCAACCCTTCAGTCCTCCTC 60.036 60.0 0.00 0.00 0.00 3.71 F
278 279 0.037232 AGCGTTGTCTTAGCCACTCC 60.037 55.0 0.00 0.00 0.00 3.85 F
279 280 0.037232 GCGTTGTCTTAGCCACTCCT 60.037 55.0 0.00 0.00 0.00 3.69 F
303 304 0.109723 TTGTAACTGTGGGCCACTCC 59.890 55.0 34.69 18.53 35.11 3.85 F
508 509 0.178990 AGGTTTGAACTCAGGTGGGC 60.179 55.0 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1819 0.392998 TGATCGCCTCCTCTTTTGCC 60.393 55.000 0.00 0.0 0.00 4.52 R
1933 1955 1.339055 CGGTGAATCAGCCTTCTTCCA 60.339 52.381 6.88 0.0 0.00 3.53 R
1934 1956 1.373570 CGGTGAATCAGCCTTCTTCC 58.626 55.000 6.88 0.0 0.00 3.46 R
1944 1966 3.030168 ATCCGGCTGCGGTGAATCA 62.030 57.895 0.00 0.0 0.00 2.57 R
2292 2317 0.179161 AATCCTCGTCGTCTTCTGCG 60.179 55.000 0.00 0.0 0.00 5.18 R
2538 2564 7.483307 ACGTATCTACCGTAACACAAACATAT 58.517 34.615 0.00 0.0 36.65 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.852388 AAAAAGGAGCAGGAGCCC 57.148 55.556 0.00 0.00 43.56 5.19
39 40 2.168161 AAAAAGGAGCAGGAGCCCT 58.832 52.632 0.00 0.00 43.56 5.19
40 41 1.372501 AAAAAGGAGCAGGAGCCCTA 58.627 50.000 0.00 0.00 43.56 3.53
41 42 0.915364 AAAAGGAGCAGGAGCCCTAG 59.085 55.000 0.00 0.00 43.56 3.02
42 43 1.631071 AAAGGAGCAGGAGCCCTAGC 61.631 60.000 0.00 1.60 43.56 3.42
43 44 3.922640 GGAGCAGGAGCCCTAGCG 61.923 72.222 0.00 0.00 46.67 4.26
44 45 3.151022 GAGCAGGAGCCCTAGCGT 61.151 66.667 0.00 0.00 46.67 5.07
45 46 3.145422 GAGCAGGAGCCCTAGCGTC 62.145 68.421 0.00 0.00 46.67 5.19
46 47 4.577246 GCAGGAGCCCTAGCGTCG 62.577 72.222 0.00 0.00 46.67 5.12
47 48 4.577246 CAGGAGCCCTAGCGTCGC 62.577 72.222 9.80 9.80 46.67 5.19
48 49 4.824515 AGGAGCCCTAGCGTCGCT 62.825 66.667 25.08 25.08 46.67 4.93
49 50 2.905880 GGAGCCCTAGCGTCGCTA 60.906 66.667 24.60 24.60 46.67 4.26
50 51 2.487532 GGAGCCCTAGCGTCGCTAA 61.488 63.158 25.89 11.44 46.67 3.09
51 52 1.436336 GAGCCCTAGCGTCGCTAAA 59.564 57.895 25.89 8.93 46.67 1.85
52 53 0.595310 GAGCCCTAGCGTCGCTAAAG 60.595 60.000 25.89 20.17 46.67 1.85
53 54 1.141234 GCCCTAGCGTCGCTAAAGT 59.859 57.895 25.89 4.76 40.82 2.66
54 55 0.459759 GCCCTAGCGTCGCTAAAGTT 60.460 55.000 25.89 4.00 40.82 2.66
55 56 1.278238 CCCTAGCGTCGCTAAAGTTG 58.722 55.000 25.89 14.57 40.82 3.16
56 57 1.278238 CCTAGCGTCGCTAAAGTTGG 58.722 55.000 25.89 19.17 40.82 3.77
57 58 1.278238 CTAGCGTCGCTAAAGTTGGG 58.722 55.000 25.89 10.26 40.82 4.12
58 59 0.108520 TAGCGTCGCTAAAGTTGGGG 60.109 55.000 24.13 0.00 38.27 4.96
59 60 1.375013 GCGTCGCTAAAGTTGGGGA 60.375 57.895 10.68 0.00 0.00 4.81
60 61 0.743345 GCGTCGCTAAAGTTGGGGAT 60.743 55.000 10.68 0.00 33.54 3.85
61 62 1.734163 CGTCGCTAAAGTTGGGGATT 58.266 50.000 0.00 0.00 33.54 3.01
62 63 1.664151 CGTCGCTAAAGTTGGGGATTC 59.336 52.381 0.00 0.00 33.54 2.52
63 64 1.664151 GTCGCTAAAGTTGGGGATTCG 59.336 52.381 0.00 0.00 33.54 3.34
64 65 1.551430 TCGCTAAAGTTGGGGATTCGA 59.449 47.619 0.00 0.00 0.00 3.71
65 66 1.664151 CGCTAAAGTTGGGGATTCGAC 59.336 52.381 0.00 0.00 0.00 4.20
66 67 2.677037 CGCTAAAGTTGGGGATTCGACT 60.677 50.000 0.00 0.00 33.04 4.18
67 68 3.344515 GCTAAAGTTGGGGATTCGACTT 58.655 45.455 0.00 0.00 41.67 3.01
68 69 3.374367 GCTAAAGTTGGGGATTCGACTTC 59.626 47.826 0.00 0.00 39.67 3.01
69 70 2.491675 AAGTTGGGGATTCGACTTCC 57.508 50.000 5.21 5.21 36.87 3.46
70 71 1.657804 AGTTGGGGATTCGACTTCCT 58.342 50.000 12.17 0.00 33.53 3.36
71 72 1.555533 AGTTGGGGATTCGACTTCCTC 59.444 52.381 12.17 9.49 34.04 3.71
72 73 0.535335 TTGGGGATTCGACTTCCTCG 59.465 55.000 12.17 0.00 44.44 4.63
73 74 1.227292 GGGGATTCGACTTCCTCGC 60.227 63.158 12.17 1.43 42.62 5.03
74 75 1.227292 GGGATTCGACTTCCTCGCC 60.227 63.158 12.17 0.00 42.62 5.54
75 76 1.227292 GGATTCGACTTCCTCGCCC 60.227 63.158 6.37 0.00 42.62 6.13
76 77 1.227292 GATTCGACTTCCTCGCCCC 60.227 63.158 0.00 0.00 42.62 5.80
77 78 1.956629 GATTCGACTTCCTCGCCCCA 61.957 60.000 0.00 0.00 42.62 4.96
78 79 2.240162 ATTCGACTTCCTCGCCCCAC 62.240 60.000 0.00 0.00 42.62 4.61
79 80 4.796231 CGACTTCCTCGCCCCACG 62.796 72.222 0.00 0.00 45.62 4.94
80 81 4.452733 GACTTCCTCGCCCCACGG 62.453 72.222 0.00 0.00 43.89 4.94
90 91 4.743018 CCCCACGGCTTTTCTCAT 57.257 55.556 0.00 0.00 0.00 2.90
91 92 2.482326 CCCCACGGCTTTTCTCATC 58.518 57.895 0.00 0.00 0.00 2.92
92 93 1.032114 CCCCACGGCTTTTCTCATCC 61.032 60.000 0.00 0.00 0.00 3.51
93 94 1.032114 CCCACGGCTTTTCTCATCCC 61.032 60.000 0.00 0.00 0.00 3.85
94 95 0.322456 CCACGGCTTTTCTCATCCCA 60.322 55.000 0.00 0.00 0.00 4.37
95 96 1.683011 CCACGGCTTTTCTCATCCCAT 60.683 52.381 0.00 0.00 0.00 4.00
96 97 2.094675 CACGGCTTTTCTCATCCCATT 58.905 47.619 0.00 0.00 0.00 3.16
97 98 2.094675 ACGGCTTTTCTCATCCCATTG 58.905 47.619 0.00 0.00 0.00 2.82
98 99 1.406539 CGGCTTTTCTCATCCCATTGG 59.593 52.381 0.00 0.00 0.00 3.16
100 101 2.428530 GGCTTTTCTCATCCCATTGGAC 59.571 50.000 3.62 0.00 45.58 4.02
101 102 3.091545 GCTTTTCTCATCCCATTGGACA 58.908 45.455 3.62 0.00 45.58 4.02
102 103 3.119352 GCTTTTCTCATCCCATTGGACAC 60.119 47.826 3.62 0.00 45.58 3.67
103 104 4.338879 CTTTTCTCATCCCATTGGACACT 58.661 43.478 3.62 0.00 45.58 3.55
104 105 5.500234 CTTTTCTCATCCCATTGGACACTA 58.500 41.667 3.62 0.00 45.58 2.74
105 106 5.715439 TTTCTCATCCCATTGGACACTAT 57.285 39.130 3.62 0.00 45.58 2.12
106 107 4.963318 TCTCATCCCATTGGACACTATC 57.037 45.455 3.62 0.00 45.58 2.08
107 108 4.297768 TCTCATCCCATTGGACACTATCA 58.702 43.478 3.62 0.00 45.58 2.15
108 109 4.721274 TCTCATCCCATTGGACACTATCAA 59.279 41.667 3.62 0.00 45.58 2.57
109 110 5.039920 TCATCCCATTGGACACTATCAAG 57.960 43.478 3.62 0.00 45.58 3.02
110 111 4.474651 TCATCCCATTGGACACTATCAAGT 59.525 41.667 3.62 0.00 45.58 3.16
125 126 8.719478 CACTATCAAGTGTTTTGATCTCAAAC 57.281 34.615 4.89 11.93 46.76 2.93
126 127 8.344831 CACTATCAAGTGTTTTGATCTCAAACA 58.655 33.333 15.71 15.71 46.76 2.83
127 128 9.071276 ACTATCAAGTGTTTTGATCTCAAACAT 57.929 29.630 20.09 10.87 38.87 2.71
128 129 9.903682 CTATCAAGTGTTTTGATCTCAAACATT 57.096 29.630 20.09 15.58 44.56 2.71
130 131 8.633075 TCAAGTGTTTTGATCTCAAACATTTC 57.367 30.769 20.09 11.69 44.56 2.17
131 132 8.249638 TCAAGTGTTTTGATCTCAAACATTTCA 58.750 29.630 20.09 10.91 44.56 2.69
132 133 8.871862 CAAGTGTTTTGATCTCAAACATTTCAA 58.128 29.630 20.09 1.71 44.56 2.69
133 134 9.603921 AAGTGTTTTGATCTCAAACATTTCAAT 57.396 25.926 20.09 5.45 44.56 2.57
134 135 9.252962 AGTGTTTTGATCTCAAACATTTCAATC 57.747 29.630 20.09 10.21 44.56 2.67
135 136 9.252962 GTGTTTTGATCTCAAACATTTCAATCT 57.747 29.630 20.09 0.00 44.56 2.40
136 137 9.820725 TGTTTTGATCTCAAACATTTCAATCTT 57.179 25.926 15.71 0.00 44.56 2.40
138 139 9.820725 TTTTGATCTCAAACATTTCAATCTTGT 57.179 25.926 4.89 0.00 44.56 3.16
139 140 9.820725 TTTGATCTCAAACATTTCAATCTTGTT 57.179 25.926 1.28 0.00 40.55 2.83
140 141 9.467258 TTGATCTCAAACATTTCAATCTTGTTC 57.533 29.630 0.00 0.00 32.66 3.18
141 142 8.853126 TGATCTCAAACATTTCAATCTTGTTCT 58.147 29.630 0.00 0.00 32.66 3.01
142 143 9.688592 GATCTCAAACATTTCAATCTTGTTCTT 57.311 29.630 0.00 0.00 32.66 2.52
143 144 8.861033 TCTCAAACATTTCAATCTTGTTCTTG 57.139 30.769 0.00 0.00 32.66 3.02
144 145 7.922278 TCTCAAACATTTCAATCTTGTTCTTGG 59.078 33.333 0.00 0.00 32.66 3.61
145 146 7.780064 TCAAACATTTCAATCTTGTTCTTGGA 58.220 30.769 0.00 0.00 32.66 3.53
146 147 8.423349 TCAAACATTTCAATCTTGTTCTTGGAT 58.577 29.630 0.00 0.00 32.66 3.41
147 148 8.492748 CAAACATTTCAATCTTGTTCTTGGATG 58.507 33.333 0.00 0.00 32.66 3.51
148 149 7.528996 ACATTTCAATCTTGTTCTTGGATGA 57.471 32.000 0.00 0.00 0.00 2.92
149 150 7.954835 ACATTTCAATCTTGTTCTTGGATGAA 58.045 30.769 0.00 0.00 0.00 2.57
150 151 8.423349 ACATTTCAATCTTGTTCTTGGATGAAA 58.577 29.630 0.00 0.00 0.00 2.69
151 152 9.431887 CATTTCAATCTTGTTCTTGGATGAAAT 57.568 29.630 0.00 0.00 33.33 2.17
152 153 8.821147 TTTCAATCTTGTTCTTGGATGAAATG 57.179 30.769 0.00 0.00 0.00 2.32
153 154 7.528996 TCAATCTTGTTCTTGGATGAAATGT 57.471 32.000 0.00 0.00 0.00 2.71
154 155 7.372714 TCAATCTTGTTCTTGGATGAAATGTG 58.627 34.615 0.00 0.00 0.00 3.21
155 156 6.906157 ATCTTGTTCTTGGATGAAATGTGT 57.094 33.333 0.00 0.00 0.00 3.72
156 157 8.298854 CAATCTTGTTCTTGGATGAAATGTGTA 58.701 33.333 0.00 0.00 0.00 2.90
157 158 7.439157 TCTTGTTCTTGGATGAAATGTGTAG 57.561 36.000 0.00 0.00 0.00 2.74
158 159 7.223584 TCTTGTTCTTGGATGAAATGTGTAGA 58.776 34.615 0.00 0.00 0.00 2.59
159 160 7.719193 TCTTGTTCTTGGATGAAATGTGTAGAA 59.281 33.333 0.00 0.00 0.00 2.10
160 161 8.408043 TTGTTCTTGGATGAAATGTGTAGAAT 57.592 30.769 0.00 0.00 0.00 2.40
161 162 8.044060 TGTTCTTGGATGAAATGTGTAGAATC 57.956 34.615 0.00 0.00 0.00 2.52
162 163 7.121168 TGTTCTTGGATGAAATGTGTAGAATCC 59.879 37.037 0.00 0.00 35.23 3.01
163 164 6.720309 TCTTGGATGAAATGTGTAGAATCCA 58.280 36.000 0.00 0.00 41.31 3.41
164 165 7.348815 TCTTGGATGAAATGTGTAGAATCCAT 58.651 34.615 3.21 0.00 42.26 3.41
165 166 7.835682 TCTTGGATGAAATGTGTAGAATCCATT 59.164 33.333 3.21 0.00 42.26 3.16
166 167 9.123902 CTTGGATGAAATGTGTAGAATCCATTA 57.876 33.333 3.21 0.00 42.26 1.90
167 168 9.473007 TTGGATGAAATGTGTAGAATCCATTAA 57.527 29.630 3.21 0.00 42.26 1.40
168 169 9.473007 TGGATGAAATGTGTAGAATCCATTAAA 57.527 29.630 0.00 0.00 38.86 1.52
171 172 9.787532 ATGAAATGTGTAGAATCCATTAAAACG 57.212 29.630 0.00 0.00 0.00 3.60
172 173 9.004717 TGAAATGTGTAGAATCCATTAAAACGA 57.995 29.630 0.00 0.00 0.00 3.85
173 174 9.834628 GAAATGTGTAGAATCCATTAAAACGAA 57.165 29.630 0.00 0.00 0.00 3.85
174 175 9.840427 AAATGTGTAGAATCCATTAAAACGAAG 57.160 29.630 0.00 0.00 0.00 3.79
175 176 6.837992 TGTGTAGAATCCATTAAAACGAAGC 58.162 36.000 0.00 0.00 0.00 3.86
176 177 6.128117 TGTGTAGAATCCATTAAAACGAAGCC 60.128 38.462 0.00 0.00 0.00 4.35
177 178 5.941058 TGTAGAATCCATTAAAACGAAGCCA 59.059 36.000 0.00 0.00 0.00 4.75
178 179 5.310720 AGAATCCATTAAAACGAAGCCAC 57.689 39.130 0.00 0.00 0.00 5.01
179 180 4.157840 AGAATCCATTAAAACGAAGCCACC 59.842 41.667 0.00 0.00 0.00 4.61
180 181 3.149005 TCCATTAAAACGAAGCCACCT 57.851 42.857 0.00 0.00 0.00 4.00
181 182 3.492337 TCCATTAAAACGAAGCCACCTT 58.508 40.909 0.00 0.00 0.00 3.50
182 183 3.254657 TCCATTAAAACGAAGCCACCTTG 59.745 43.478 0.00 0.00 0.00 3.61
183 184 2.785713 TTAAAACGAAGCCACCTTGC 57.214 45.000 0.00 0.00 0.00 4.01
184 185 0.955905 TAAAACGAAGCCACCTTGCC 59.044 50.000 0.00 0.00 0.00 4.52
185 186 1.744320 AAAACGAAGCCACCTTGCCC 61.744 55.000 0.00 0.00 0.00 5.36
202 203 4.265282 CGCCTCCGGTTCGTTTTA 57.735 55.556 0.00 0.00 0.00 1.52
203 204 2.075761 CGCCTCCGGTTCGTTTTAG 58.924 57.895 0.00 0.00 0.00 1.85
204 205 0.668401 CGCCTCCGGTTCGTTTTAGT 60.668 55.000 0.00 0.00 0.00 2.24
205 206 1.073964 GCCTCCGGTTCGTTTTAGTC 58.926 55.000 0.00 0.00 0.00 2.59
206 207 1.337541 GCCTCCGGTTCGTTTTAGTCT 60.338 52.381 0.00 0.00 0.00 3.24
207 208 2.869237 GCCTCCGGTTCGTTTTAGTCTT 60.869 50.000 0.00 0.00 0.00 3.01
208 209 3.614870 GCCTCCGGTTCGTTTTAGTCTTA 60.615 47.826 0.00 0.00 0.00 2.10
209 210 4.171754 CCTCCGGTTCGTTTTAGTCTTAG 58.828 47.826 0.00 0.00 0.00 2.18
210 211 4.082571 CCTCCGGTTCGTTTTAGTCTTAGA 60.083 45.833 0.00 0.00 0.00 2.10
211 212 4.798574 TCCGGTTCGTTTTAGTCTTAGAC 58.201 43.478 3.85 3.85 0.00 2.59
212 213 3.922850 CCGGTTCGTTTTAGTCTTAGACC 59.077 47.826 8.96 0.00 32.18 3.85
213 214 3.922850 CGGTTCGTTTTAGTCTTAGACCC 59.077 47.826 8.96 0.00 32.18 4.46
214 215 4.321527 CGGTTCGTTTTAGTCTTAGACCCT 60.322 45.833 8.96 0.00 32.18 4.34
215 216 4.928020 GGTTCGTTTTAGTCTTAGACCCTG 59.072 45.833 8.96 0.00 32.18 4.45
216 217 5.510349 GGTTCGTTTTAGTCTTAGACCCTGT 60.510 44.000 8.96 0.00 32.18 4.00
217 218 5.796424 TCGTTTTAGTCTTAGACCCTGTT 57.204 39.130 8.96 0.00 32.18 3.16
218 219 5.776744 TCGTTTTAGTCTTAGACCCTGTTC 58.223 41.667 8.96 0.00 32.18 3.18
219 220 4.620184 CGTTTTAGTCTTAGACCCTGTTCG 59.380 45.833 8.96 4.26 32.18 3.95
220 221 4.796038 TTTAGTCTTAGACCCTGTTCGG 57.204 45.455 8.96 0.00 32.18 4.30
221 222 0.896226 AGTCTTAGACCCTGTTCGGC 59.104 55.000 8.96 0.00 32.18 5.54
222 223 0.606604 GTCTTAGACCCTGTTCGGCA 59.393 55.000 0.00 0.00 0.00 5.69
223 224 1.001633 GTCTTAGACCCTGTTCGGCAA 59.998 52.381 0.00 0.00 0.00 4.52
224 225 1.001633 TCTTAGACCCTGTTCGGCAAC 59.998 52.381 0.00 0.00 0.00 4.17
225 226 0.035739 TTAGACCCTGTTCGGCAACC 59.964 55.000 0.00 0.00 0.00 3.77
226 227 1.833787 TAGACCCTGTTCGGCAACCC 61.834 60.000 0.00 0.00 0.00 4.11
227 228 3.175710 ACCCTGTTCGGCAACCCT 61.176 61.111 0.00 0.00 0.00 4.34
228 229 2.115266 CCCTGTTCGGCAACCCTT 59.885 61.111 0.00 0.00 0.00 3.95
229 230 1.971695 CCCTGTTCGGCAACCCTTC 60.972 63.158 0.00 0.00 0.00 3.46
230 231 1.228124 CCTGTTCGGCAACCCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
231 232 1.237285 CCTGTTCGGCAACCCTTCAG 61.237 60.000 0.00 0.00 0.00 3.02
232 233 0.535102 CTGTTCGGCAACCCTTCAGT 60.535 55.000 0.00 0.00 0.00 3.41
233 234 0.534203 TGTTCGGCAACCCTTCAGTC 60.534 55.000 0.00 0.00 0.00 3.51
234 235 1.072505 TTCGGCAACCCTTCAGTCC 59.927 57.895 0.00 0.00 0.00 3.85
235 236 1.415672 TTCGGCAACCCTTCAGTCCT 61.416 55.000 0.00 0.00 0.00 3.85
236 237 1.376037 CGGCAACCCTTCAGTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
237 238 1.002011 GGCAACCCTTCAGTCCTCC 60.002 63.158 0.00 0.00 0.00 4.30
238 239 1.492993 GGCAACCCTTCAGTCCTCCT 61.493 60.000 0.00 0.00 0.00 3.69
239 240 0.035915 GCAACCCTTCAGTCCTCCTC 60.036 60.000 0.00 0.00 0.00 3.71
240 241 1.650528 CAACCCTTCAGTCCTCCTCT 58.349 55.000 0.00 0.00 0.00 3.69
241 242 2.821437 CAACCCTTCAGTCCTCCTCTA 58.179 52.381 0.00 0.00 0.00 2.43
242 243 2.498078 CAACCCTTCAGTCCTCCTCTAC 59.502 54.545 0.00 0.00 0.00 2.59
243 244 1.717077 ACCCTTCAGTCCTCCTCTACA 59.283 52.381 0.00 0.00 0.00 2.74
244 245 2.291930 ACCCTTCAGTCCTCCTCTACAG 60.292 54.545 0.00 0.00 0.00 2.74
245 246 2.024846 CCCTTCAGTCCTCCTCTACAGA 60.025 54.545 0.00 0.00 0.00 3.41
246 247 3.287222 CCTTCAGTCCTCCTCTACAGAG 58.713 54.545 0.00 0.00 41.71 3.35
247 248 3.308832 CCTTCAGTCCTCCTCTACAGAGT 60.309 52.174 5.56 0.00 40.48 3.24
248 249 3.358111 TCAGTCCTCCTCTACAGAGTG 57.642 52.381 5.56 0.00 40.48 3.51
249 250 2.025793 TCAGTCCTCCTCTACAGAGTGG 60.026 54.545 5.56 7.20 40.48 4.00
250 251 2.025793 CAGTCCTCCTCTACAGAGTGGA 60.026 54.545 11.76 11.76 41.96 4.02
253 254 3.176728 TCCTCTACAGAGTGGAGCG 57.823 57.895 5.15 0.31 39.85 5.03
254 255 1.032657 TCCTCTACAGAGTGGAGCGC 61.033 60.000 0.00 0.00 39.85 5.92
255 256 1.063327 CTCTACAGAGTGGAGCGCG 59.937 63.158 0.00 0.00 34.65 6.86
256 257 2.580867 CTACAGAGTGGAGCGCGC 60.581 66.667 26.66 26.66 0.00 6.86
257 258 3.342370 CTACAGAGTGGAGCGCGCA 62.342 63.158 35.10 10.31 0.00 6.09
258 259 2.819117 CTACAGAGTGGAGCGCGCAA 62.819 60.000 35.10 15.97 0.00 4.85
259 260 2.428960 TACAGAGTGGAGCGCGCAAA 62.429 55.000 35.10 15.55 0.00 3.68
260 261 2.740055 AGAGTGGAGCGCGCAAAG 60.740 61.111 35.10 0.00 0.00 2.77
261 262 4.451652 GAGTGGAGCGCGCAAAGC 62.452 66.667 35.10 19.84 43.95 3.51
273 274 3.384702 GCAAAGCGTTGTCTTAGCC 57.615 52.632 13.93 0.00 37.06 3.93
274 275 0.591170 GCAAAGCGTTGTCTTAGCCA 59.409 50.000 13.93 0.00 37.06 4.75
275 276 1.663161 GCAAAGCGTTGTCTTAGCCAC 60.663 52.381 13.93 0.00 37.06 5.01
276 277 1.873591 CAAAGCGTTGTCTTAGCCACT 59.126 47.619 4.01 0.00 0.00 4.00
277 278 1.797025 AAGCGTTGTCTTAGCCACTC 58.203 50.000 0.00 0.00 0.00 3.51
278 279 0.037232 AGCGTTGTCTTAGCCACTCC 60.037 55.000 0.00 0.00 0.00 3.85
279 280 0.037232 GCGTTGTCTTAGCCACTCCT 60.037 55.000 0.00 0.00 0.00 3.69
280 281 1.997669 CGTTGTCTTAGCCACTCCTC 58.002 55.000 0.00 0.00 0.00 3.71
281 282 1.272490 CGTTGTCTTAGCCACTCCTCA 59.728 52.381 0.00 0.00 0.00 3.86
282 283 2.288825 CGTTGTCTTAGCCACTCCTCAA 60.289 50.000 0.00 0.00 0.00 3.02
283 284 3.740115 GTTGTCTTAGCCACTCCTCAAA 58.260 45.455 0.00 0.00 0.00 2.69
284 285 4.327680 GTTGTCTTAGCCACTCCTCAAAT 58.672 43.478 0.00 0.00 0.00 2.32
285 286 4.640771 TGTCTTAGCCACTCCTCAAATT 57.359 40.909 0.00 0.00 0.00 1.82
286 287 4.326826 TGTCTTAGCCACTCCTCAAATTG 58.673 43.478 0.00 0.00 0.00 2.32
287 288 4.202461 TGTCTTAGCCACTCCTCAAATTGT 60.202 41.667 0.00 0.00 0.00 2.71
288 289 5.012664 TGTCTTAGCCACTCCTCAAATTGTA 59.987 40.000 0.00 0.00 0.00 2.41
289 290 5.938125 GTCTTAGCCACTCCTCAAATTGTAA 59.062 40.000 0.00 0.00 0.00 2.41
290 291 5.938125 TCTTAGCCACTCCTCAAATTGTAAC 59.062 40.000 0.00 0.00 0.00 2.50
291 292 4.373156 AGCCACTCCTCAAATTGTAACT 57.627 40.909 0.00 0.00 0.00 2.24
292 293 4.074970 AGCCACTCCTCAAATTGTAACTG 58.925 43.478 0.00 0.00 0.00 3.16
293 294 3.821033 GCCACTCCTCAAATTGTAACTGT 59.179 43.478 0.00 0.00 0.00 3.55
294 295 4.320494 GCCACTCCTCAAATTGTAACTGTG 60.320 45.833 0.00 0.00 0.00 3.66
295 296 4.216257 CCACTCCTCAAATTGTAACTGTGG 59.784 45.833 10.95 10.95 35.89 4.17
296 297 4.216257 CACTCCTCAAATTGTAACTGTGGG 59.784 45.833 0.00 0.00 0.00 4.61
297 298 3.153919 TCCTCAAATTGTAACTGTGGGC 58.846 45.455 0.00 0.00 0.00 5.36
298 299 2.231235 CCTCAAATTGTAACTGTGGGCC 59.769 50.000 0.00 0.00 0.00 5.80
299 300 2.890311 CTCAAATTGTAACTGTGGGCCA 59.110 45.455 0.00 0.00 0.00 5.36
300 301 2.625790 TCAAATTGTAACTGTGGGCCAC 59.374 45.455 29.75 29.75 34.56 5.01
301 302 2.627699 CAAATTGTAACTGTGGGCCACT 59.372 45.455 34.69 19.23 35.11 4.00
302 303 2.200373 ATTGTAACTGTGGGCCACTC 57.800 50.000 34.69 19.82 35.11 3.51
303 304 0.109723 TTGTAACTGTGGGCCACTCC 59.890 55.000 34.69 18.53 35.11 3.85
304 305 1.375523 GTAACTGTGGGCCACTCCG 60.376 63.158 34.69 24.43 35.11 4.63
305 306 3.248446 TAACTGTGGGCCACTCCGC 62.248 63.158 34.69 11.26 35.11 5.54
307 308 4.335647 CTGTGGGCCACTCCGCTT 62.336 66.667 34.69 0.00 38.11 4.68
308 309 4.329545 TGTGGGCCACTCCGCTTC 62.330 66.667 34.69 8.91 38.11 3.86
309 310 4.329545 GTGGGCCACTCCGCTTCA 62.330 66.667 29.22 0.00 34.64 3.02
310 311 4.020617 TGGGCCACTCCGCTTCAG 62.021 66.667 0.00 0.00 34.94 3.02
312 313 4.704833 GGCCACTCCGCTTCAGCA 62.705 66.667 0.00 0.00 42.21 4.41
313 314 2.437359 GCCACTCCGCTTCAGCAT 60.437 61.111 0.00 0.00 42.21 3.79
314 315 2.758089 GCCACTCCGCTTCAGCATG 61.758 63.158 0.00 0.00 42.21 4.06
330 331 3.146618 GCATGAAGTTGCTGAATGGAG 57.853 47.619 0.00 0.00 39.57 3.86
331 332 2.159282 GCATGAAGTTGCTGAATGGAGG 60.159 50.000 0.00 0.00 39.57 4.30
332 333 2.957402 TGAAGTTGCTGAATGGAGGT 57.043 45.000 0.00 0.00 0.00 3.85
333 334 2.507484 TGAAGTTGCTGAATGGAGGTG 58.493 47.619 0.00 0.00 0.00 4.00
334 335 2.158623 TGAAGTTGCTGAATGGAGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
335 336 2.191128 AGTTGCTGAATGGAGGTGTC 57.809 50.000 0.00 0.00 0.00 3.67
336 337 0.798776 GTTGCTGAATGGAGGTGTCG 59.201 55.000 0.00 0.00 0.00 4.35
337 338 0.396435 TTGCTGAATGGAGGTGTCGT 59.604 50.000 0.00 0.00 0.00 4.34
338 339 0.396435 TGCTGAATGGAGGTGTCGTT 59.604 50.000 0.00 0.00 0.00 3.85
339 340 1.621317 TGCTGAATGGAGGTGTCGTTA 59.379 47.619 0.00 0.00 0.00 3.18
340 341 2.271800 GCTGAATGGAGGTGTCGTTAG 58.728 52.381 0.00 0.00 0.00 2.34
341 342 2.893637 CTGAATGGAGGTGTCGTTAGG 58.106 52.381 0.00 0.00 0.00 2.69
342 343 2.233922 CTGAATGGAGGTGTCGTTAGGT 59.766 50.000 0.00 0.00 0.00 3.08
343 344 2.028476 TGAATGGAGGTGTCGTTAGGTG 60.028 50.000 0.00 0.00 0.00 4.00
344 345 0.902531 ATGGAGGTGTCGTTAGGTGG 59.097 55.000 0.00 0.00 0.00 4.61
345 346 0.470456 TGGAGGTGTCGTTAGGTGGT 60.470 55.000 0.00 0.00 0.00 4.16
346 347 0.683412 GGAGGTGTCGTTAGGTGGTT 59.317 55.000 0.00 0.00 0.00 3.67
347 348 1.071228 GGAGGTGTCGTTAGGTGGTTT 59.929 52.381 0.00 0.00 0.00 3.27
348 349 2.299867 GGAGGTGTCGTTAGGTGGTTTA 59.700 50.000 0.00 0.00 0.00 2.01
349 350 3.055602 GGAGGTGTCGTTAGGTGGTTTAT 60.056 47.826 0.00 0.00 0.00 1.40
350 351 4.160252 GGAGGTGTCGTTAGGTGGTTTATA 59.840 45.833 0.00 0.00 0.00 0.98
351 352 5.334724 AGGTGTCGTTAGGTGGTTTATAG 57.665 43.478 0.00 0.00 0.00 1.31
352 353 5.018809 AGGTGTCGTTAGGTGGTTTATAGA 58.981 41.667 0.00 0.00 0.00 1.98
353 354 5.659971 AGGTGTCGTTAGGTGGTTTATAGAT 59.340 40.000 0.00 0.00 0.00 1.98
354 355 5.981915 GGTGTCGTTAGGTGGTTTATAGATC 59.018 44.000 0.00 0.00 0.00 2.75
355 356 6.183360 GGTGTCGTTAGGTGGTTTATAGATCT 60.183 42.308 0.00 0.00 0.00 2.75
356 357 6.696148 GTGTCGTTAGGTGGTTTATAGATCTG 59.304 42.308 5.18 0.00 0.00 2.90
357 358 6.604396 TGTCGTTAGGTGGTTTATAGATCTGA 59.396 38.462 5.18 0.00 0.00 3.27
358 359 7.123098 TGTCGTTAGGTGGTTTATAGATCTGAA 59.877 37.037 5.18 0.00 0.00 3.02
359 360 8.142551 GTCGTTAGGTGGTTTATAGATCTGAAT 58.857 37.037 5.18 0.00 0.00 2.57
360 361 8.141909 TCGTTAGGTGGTTTATAGATCTGAATG 58.858 37.037 5.18 0.00 0.00 2.67
361 362 7.926555 CGTTAGGTGGTTTATAGATCTGAATGT 59.073 37.037 5.18 0.00 0.00 2.71
365 366 8.993424 AGGTGGTTTATAGATCTGAATGTAACT 58.007 33.333 5.18 0.00 0.00 2.24
366 367 9.614792 GGTGGTTTATAGATCTGAATGTAACTT 57.385 33.333 5.18 0.00 0.00 2.66
429 430 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
430 431 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
432 433 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
433 434 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
434 435 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
435 436 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
446 447 3.334413 GGCTAACCCTCGTTGGTTT 57.666 52.632 14.77 1.74 46.45 3.27
447 448 1.612676 GGCTAACCCTCGTTGGTTTT 58.387 50.000 14.77 2.78 46.45 2.43
448 449 1.958579 GGCTAACCCTCGTTGGTTTTT 59.041 47.619 14.77 0.00 46.45 1.94
469 470 7.499321 TTTTTGTATAGAAGAAACTCCGCAA 57.501 32.000 0.00 0.00 0.00 4.85
470 471 6.721571 TTTGTATAGAAGAAACTCCGCAAG 57.278 37.500 0.00 0.00 0.00 4.01
471 472 4.181578 TGTATAGAAGAAACTCCGCAAGC 58.818 43.478 0.00 0.00 0.00 4.01
472 473 2.831685 TAGAAGAAACTCCGCAAGCA 57.168 45.000 0.00 0.00 0.00 3.91
473 474 1.230324 AGAAGAAACTCCGCAAGCAC 58.770 50.000 0.00 0.00 0.00 4.40
474 475 0.238553 GAAGAAACTCCGCAAGCACC 59.761 55.000 0.00 0.00 0.00 5.01
475 476 1.507141 AAGAAACTCCGCAAGCACCG 61.507 55.000 0.00 0.00 0.00 4.94
476 477 3.595108 GAAACTCCGCAAGCACCGC 62.595 63.158 0.00 0.00 0.00 5.68
488 489 3.943034 CACCGCGCGTCAAAACCA 61.943 61.111 29.95 0.00 0.00 3.67
489 490 3.203412 ACCGCGCGTCAAAACCAA 61.203 55.556 29.95 0.00 0.00 3.67
490 491 2.426752 CCGCGCGTCAAAACCAAG 60.427 61.111 29.95 4.86 0.00 3.61
491 492 2.426752 CGCGCGTCAAAACCAAGG 60.427 61.111 24.19 0.00 0.00 3.61
492 493 2.719354 GCGCGTCAAAACCAAGGT 59.281 55.556 8.43 0.00 0.00 3.50
493 494 1.065109 GCGCGTCAAAACCAAGGTT 59.935 52.632 8.43 0.00 40.45 3.50
495 496 1.196200 CGCGTCAAAACCAAGGTTTG 58.804 50.000 17.27 7.22 46.22 2.93
496 497 1.202200 CGCGTCAAAACCAAGGTTTGA 60.202 47.619 17.27 9.57 46.22 2.69
497 498 2.732597 CGCGTCAAAACCAAGGTTTGAA 60.733 45.455 17.27 6.59 46.22 2.69
498 499 2.601314 GCGTCAAAACCAAGGTTTGAAC 59.399 45.455 17.27 15.82 46.22 3.18
499 500 3.674955 GCGTCAAAACCAAGGTTTGAACT 60.675 43.478 17.27 0.00 46.22 3.01
500 501 4.102649 CGTCAAAACCAAGGTTTGAACTC 58.897 43.478 17.27 6.74 46.22 3.01
501 502 4.380023 CGTCAAAACCAAGGTTTGAACTCA 60.380 41.667 17.27 0.00 46.22 3.41
502 503 5.102313 GTCAAAACCAAGGTTTGAACTCAG 58.898 41.667 17.27 3.55 46.22 3.35
503 504 4.159506 TCAAAACCAAGGTTTGAACTCAGG 59.840 41.667 17.27 2.06 46.22 3.86
504 505 3.382083 AACCAAGGTTTGAACTCAGGT 57.618 42.857 0.00 0.00 34.22 4.00
505 506 2.654863 ACCAAGGTTTGAACTCAGGTG 58.345 47.619 0.00 0.00 0.00 4.00
506 507 1.956477 CCAAGGTTTGAACTCAGGTGG 59.044 52.381 0.00 0.00 0.00 4.61
507 508 1.956477 CAAGGTTTGAACTCAGGTGGG 59.044 52.381 0.00 0.00 0.00 4.61
508 509 0.178990 AGGTTTGAACTCAGGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
509 510 0.178990 GGTTTGAACTCAGGTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
510 511 0.954452 GTTTGAACTCAGGTGGGCTG 59.046 55.000 0.00 0.00 0.00 4.85
511 512 0.178992 TTTGAACTCAGGTGGGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
512 513 2.360475 GAACTCAGGTGGGCTGGC 60.360 66.667 0.00 0.00 0.00 4.85
513 514 3.177884 AACTCAGGTGGGCTGGCA 61.178 61.111 2.88 0.00 0.00 4.92
514 515 3.201707 AACTCAGGTGGGCTGGCAG 62.202 63.158 10.94 10.94 0.00 4.85
517 518 3.720601 CAGGTGGGCTGGCAGCTA 61.721 66.667 35.73 23.43 41.99 3.32
518 519 2.935481 AGGTGGGCTGGCAGCTAA 60.935 61.111 35.73 22.68 41.99 3.09
519 520 2.751837 GGTGGGCTGGCAGCTAAC 60.752 66.667 35.73 30.43 41.99 2.34
520 521 2.751837 GTGGGCTGGCAGCTAACC 60.752 66.667 35.73 28.35 41.99 2.85
521 522 2.935481 TGGGCTGGCAGCTAACCT 60.935 61.111 35.73 0.00 41.99 3.50
522 523 2.124529 GGGCTGGCAGCTAACCTC 60.125 66.667 35.73 19.55 41.99 3.85
523 524 2.671070 GGCTGGCAGCTAACCTCA 59.329 61.111 35.73 0.00 41.99 3.86
524 525 1.451028 GGCTGGCAGCTAACCTCAG 60.451 63.158 35.73 0.00 41.99 3.35
525 526 2.111582 GCTGGCAGCTAACCTCAGC 61.112 63.158 31.37 1.84 42.89 4.26
531 532 2.671070 GCTAACCTCAGCTGCCCA 59.329 61.111 9.47 0.00 38.57 5.36
532 533 1.451028 GCTAACCTCAGCTGCCCAG 60.451 63.158 9.47 0.70 38.57 4.45
562 563 2.862738 ACGCCCCGTCCTTAAAATG 58.137 52.632 0.00 0.00 33.69 2.32
563 564 0.325602 ACGCCCCGTCCTTAAAATGA 59.674 50.000 0.00 0.00 33.69 2.57
564 565 1.014352 CGCCCCGTCCTTAAAATGAG 58.986 55.000 0.00 0.00 0.00 2.90
565 566 1.406341 CGCCCCGTCCTTAAAATGAGA 60.406 52.381 0.00 0.00 0.00 3.27
566 567 2.745152 CGCCCCGTCCTTAAAATGAGAT 60.745 50.000 0.00 0.00 0.00 2.75
567 568 2.879026 GCCCCGTCCTTAAAATGAGATC 59.121 50.000 0.00 0.00 0.00 2.75
568 569 3.684413 GCCCCGTCCTTAAAATGAGATCA 60.684 47.826 0.00 0.00 0.00 2.92
569 570 4.523083 CCCCGTCCTTAAAATGAGATCAA 58.477 43.478 0.00 0.00 0.00 2.57
570 571 4.335594 CCCCGTCCTTAAAATGAGATCAAC 59.664 45.833 0.00 0.00 0.00 3.18
571 572 4.335594 CCCGTCCTTAAAATGAGATCAACC 59.664 45.833 0.00 0.00 0.00 3.77
572 573 4.335594 CCGTCCTTAAAATGAGATCAACCC 59.664 45.833 0.00 0.00 0.00 4.11
573 574 4.941263 CGTCCTTAAAATGAGATCAACCCA 59.059 41.667 0.00 0.00 0.00 4.51
574 575 5.414454 CGTCCTTAAAATGAGATCAACCCAA 59.586 40.000 0.00 0.00 0.00 4.12
575 576 6.403636 CGTCCTTAAAATGAGATCAACCCAAG 60.404 42.308 0.00 0.00 0.00 3.61
576 577 6.659242 GTCCTTAAAATGAGATCAACCCAAGA 59.341 38.462 0.00 0.00 0.00 3.02
577 578 6.886459 TCCTTAAAATGAGATCAACCCAAGAG 59.114 38.462 0.00 0.00 0.00 2.85
578 579 6.405176 CCTTAAAATGAGATCAACCCAAGAGC 60.405 42.308 0.00 0.00 0.00 4.09
579 580 4.313020 AAATGAGATCAACCCAAGAGCT 57.687 40.909 0.00 0.00 33.87 4.09
580 581 5.441718 AAATGAGATCAACCCAAGAGCTA 57.558 39.130 0.00 0.00 30.84 3.32
581 582 5.441718 AATGAGATCAACCCAAGAGCTAA 57.558 39.130 0.00 0.00 30.84 3.09
582 583 4.207891 TGAGATCAACCCAAGAGCTAAC 57.792 45.455 0.00 0.00 30.84 2.34
583 584 3.055094 TGAGATCAACCCAAGAGCTAACC 60.055 47.826 0.00 0.00 30.84 2.85
584 585 2.239907 AGATCAACCCAAGAGCTAACCC 59.760 50.000 0.00 0.00 28.48 4.11
585 586 1.742308 TCAACCCAAGAGCTAACCCT 58.258 50.000 0.00 0.00 0.00 4.34
586 587 1.628846 TCAACCCAAGAGCTAACCCTC 59.371 52.381 0.00 0.00 0.00 4.30
587 588 0.613777 AACCCAAGAGCTAACCCTCG 59.386 55.000 0.00 0.00 36.95 4.63
588 589 0.544595 ACCCAAGAGCTAACCCTCGT 60.545 55.000 0.00 0.00 36.95 4.18
589 590 0.613777 CCCAAGAGCTAACCCTCGTT 59.386 55.000 0.00 0.00 36.95 3.85
590 591 1.676014 CCCAAGAGCTAACCCTCGTTG 60.676 57.143 0.00 0.00 36.95 4.10
591 592 1.275291 CCAAGAGCTAACCCTCGTTGA 59.725 52.381 0.00 0.00 36.95 3.18
592 593 2.289444 CCAAGAGCTAACCCTCGTTGAA 60.289 50.000 0.00 0.00 36.95 2.69
593 594 3.399330 CAAGAGCTAACCCTCGTTGAAA 58.601 45.455 0.00 0.00 36.95 2.69
594 595 3.983044 AGAGCTAACCCTCGTTGAAAT 57.017 42.857 0.00 0.00 36.95 2.17
595 596 4.287766 AGAGCTAACCCTCGTTGAAATT 57.712 40.909 0.00 0.00 36.95 1.82
596 597 4.652822 AGAGCTAACCCTCGTTGAAATTT 58.347 39.130 0.00 0.00 36.95 1.82
597 598 5.070685 AGAGCTAACCCTCGTTGAAATTTT 58.929 37.500 0.00 0.00 36.95 1.82
598 599 5.535030 AGAGCTAACCCTCGTTGAAATTTTT 59.465 36.000 0.00 0.00 36.95 1.94
617 618 4.828291 TTTTTATACGAGAAACTCCGCG 57.172 40.909 0.00 0.00 0.00 6.46
618 619 3.763097 TTTATACGAGAAACTCCGCGA 57.237 42.857 8.23 0.00 0.00 5.87
619 620 3.329743 TTATACGAGAAACTCCGCGAG 57.670 47.619 8.23 5.77 35.52 5.03
620 621 0.248539 ATACGAGAAACTCCGCGAGC 60.249 55.000 8.23 0.00 32.04 5.03
621 622 1.579964 TACGAGAAACTCCGCGAGCA 61.580 55.000 8.23 0.00 32.04 4.26
622 623 2.437343 CGAGAAACTCCGCGAGCAC 61.437 63.158 8.23 0.00 32.04 4.40
623 624 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
624 625 2.357034 GAAACTCCGCGAGCACCA 60.357 61.111 8.23 0.00 32.04 4.17
625 626 1.741770 GAAACTCCGCGAGCACCAT 60.742 57.895 8.23 0.00 32.04 3.55
626 627 1.970917 GAAACTCCGCGAGCACCATG 61.971 60.000 8.23 0.00 32.04 3.66
636 637 2.126346 GCACCATGCGTCAAAGCC 60.126 61.111 0.00 0.00 31.71 4.35
637 638 2.176546 CACCATGCGTCAAAGCCG 59.823 61.111 0.00 0.00 36.02 5.52
638 639 3.055719 ACCATGCGTCAAAGCCGG 61.056 61.111 0.00 0.00 36.02 6.13
639 640 3.814268 CCATGCGTCAAAGCCGGG 61.814 66.667 2.18 0.00 36.02 5.73
640 641 3.814268 CATGCGTCAAAGCCGGGG 61.814 66.667 2.18 0.00 36.02 5.73
652 653 4.778143 CCGGGGCTTGAACTCGGG 62.778 72.222 0.00 0.00 37.35 5.14
653 654 4.016706 CGGGGCTTGAACTCGGGT 62.017 66.667 0.00 0.00 0.00 5.28
654 655 2.359975 GGGGCTTGAACTCGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
655 656 2.359975 GGGCTTGAACTCGGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
656 657 2.359975 GGCTTGAACTCGGGTGGG 60.360 66.667 0.00 0.00 0.00 4.61
657 658 2.747686 GCTTGAACTCGGGTGGGA 59.252 61.111 0.00 0.00 0.00 4.37
658 659 1.299976 GCTTGAACTCGGGTGGGAT 59.700 57.895 0.00 0.00 0.00 3.85
659 660 1.026718 GCTTGAACTCGGGTGGGATG 61.027 60.000 0.00 0.00 0.00 3.51
660 661 0.392998 CTTGAACTCGGGTGGGATGG 60.393 60.000 0.00 0.00 0.00 3.51
661 662 2.124695 GAACTCGGGTGGGATGGC 60.125 66.667 0.00 0.00 0.00 4.40
662 663 2.933287 AACTCGGGTGGGATGGCA 60.933 61.111 0.00 0.00 0.00 4.92
663 664 2.876368 GAACTCGGGTGGGATGGCAG 62.876 65.000 0.00 0.00 0.00 4.85
664 665 4.864334 CTCGGGTGGGATGGCAGC 62.864 72.222 0.00 0.00 0.00 5.25
666 667 3.479203 CGGGTGGGATGGCAGCTA 61.479 66.667 1.50 0.00 0.00 3.32
667 668 2.822637 CGGGTGGGATGGCAGCTAT 61.823 63.158 1.50 0.00 0.00 2.97
668 669 1.073897 GGGTGGGATGGCAGCTATC 59.926 63.158 10.28 10.28 0.00 2.08
669 670 1.073897 GGTGGGATGGCAGCTATCC 59.926 63.158 26.21 26.21 42.73 2.59
705 706 3.823330 GTCGACGCCCGTCCTCAT 61.823 66.667 14.40 0.00 41.76 2.90
706 707 3.822192 TCGACGCCCGTCCTCATG 61.822 66.667 14.40 1.41 41.76 3.07
707 708 3.822192 CGACGCCCGTCCTCATGA 61.822 66.667 14.40 0.00 41.76 3.07
708 709 2.815308 GACGCCCGTCCTCATGAT 59.185 61.111 9.53 0.00 39.08 2.45
709 710 1.792118 CGACGCCCGTCCTCATGATA 61.792 60.000 14.40 0.00 41.76 2.15
710 711 0.387929 GACGCCCGTCCTCATGATAA 59.612 55.000 9.53 0.00 39.08 1.75
711 712 1.000955 GACGCCCGTCCTCATGATAAT 59.999 52.381 9.53 0.00 39.08 1.28
712 713 1.270305 ACGCCCGTCCTCATGATAATG 60.270 52.381 0.00 0.00 0.00 1.90
713 714 1.000843 CGCCCGTCCTCATGATAATGA 59.999 52.381 0.00 0.00 0.00 2.57
714 715 2.354103 CGCCCGTCCTCATGATAATGAT 60.354 50.000 0.00 0.00 0.00 2.45
715 716 3.005554 GCCCGTCCTCATGATAATGATG 58.994 50.000 0.00 0.00 0.00 3.07
716 717 3.306989 GCCCGTCCTCATGATAATGATGA 60.307 47.826 0.00 0.00 0.00 2.92
717 718 4.502016 CCCGTCCTCATGATAATGATGAG 58.498 47.826 0.00 6.49 44.43 2.90
718 719 3.931468 CCGTCCTCATGATAATGATGAGC 59.069 47.826 7.70 0.00 43.77 4.26
719 720 4.562143 CCGTCCTCATGATAATGATGAGCA 60.562 45.833 7.70 0.00 43.77 4.26
720 721 4.626172 CGTCCTCATGATAATGATGAGCAG 59.374 45.833 7.70 0.00 43.77 4.24
721 722 5.566230 CGTCCTCATGATAATGATGAGCAGA 60.566 44.000 7.70 0.00 43.77 4.26
722 723 6.408035 GTCCTCATGATAATGATGAGCAGAT 58.592 40.000 7.70 0.00 43.77 2.90
723 724 6.879993 GTCCTCATGATAATGATGAGCAGATT 59.120 38.462 7.70 0.00 43.77 2.40
724 725 6.879458 TCCTCATGATAATGATGAGCAGATTG 59.121 38.462 7.70 0.00 43.77 2.67
725 726 6.879458 CCTCATGATAATGATGAGCAGATTGA 59.121 38.462 7.70 0.00 43.77 2.57
726 727 7.390718 CCTCATGATAATGATGAGCAGATTGAA 59.609 37.037 7.70 0.00 43.77 2.69
727 728 8.685838 TCATGATAATGATGAGCAGATTGAAA 57.314 30.769 0.00 0.00 0.00 2.69
728 729 8.784043 TCATGATAATGATGAGCAGATTGAAAG 58.216 33.333 0.00 0.00 0.00 2.62
729 730 8.568794 CATGATAATGATGAGCAGATTGAAAGT 58.431 33.333 0.00 0.00 0.00 2.66
730 731 8.515695 TGATAATGATGAGCAGATTGAAAGTT 57.484 30.769 0.00 0.00 0.00 2.66
731 732 8.963725 TGATAATGATGAGCAGATTGAAAGTTT 58.036 29.630 0.00 0.00 0.00 2.66
732 733 9.798994 GATAATGATGAGCAGATTGAAAGTTTT 57.201 29.630 0.00 0.00 0.00 2.43
805 815 0.453282 CTGCAATGCACGAAACGGAG 60.453 55.000 2.72 0.00 33.79 4.63
836 851 2.233566 AGCCCAGCCAAGACATCCA 61.234 57.895 0.00 0.00 0.00 3.41
1026 1042 1.807573 CCTCTTCAACTCGCTCGCC 60.808 63.158 0.00 0.00 0.00 5.54
1176 1198 2.126307 CAGTCCGAGACCGTGCTG 60.126 66.667 1.06 0.00 32.18 4.41
1500 1522 2.668632 GATCCGGCCACCTTCACA 59.331 61.111 2.24 0.00 0.00 3.58
1671 1693 0.690762 TGTTCTGGGCCAGGTACTTC 59.309 55.000 32.23 16.13 34.60 3.01
1782 1804 1.265454 GGGAGGTGGATGACGAGGTT 61.265 60.000 0.00 0.00 0.00 3.50
1797 1819 2.726351 GGTTGAGGAGGAGGAGCCG 61.726 68.421 0.00 0.00 43.43 5.52
1824 1846 1.746615 GGAGGCGATCAAGCAAGCA 60.747 57.895 0.00 0.00 39.27 3.91
1933 1955 1.417890 CCGGTGCTCTGGATAAGGAAT 59.582 52.381 7.96 0.00 42.46 3.01
1934 1956 2.487934 CGGTGCTCTGGATAAGGAATG 58.512 52.381 0.00 0.00 0.00 2.67
1941 1963 5.062528 GCTCTGGATAAGGAATGGAAGAAG 58.937 45.833 0.00 0.00 0.00 2.85
1944 1966 3.788142 TGGATAAGGAATGGAAGAAGGCT 59.212 43.478 0.00 0.00 0.00 4.58
2004 2029 2.824341 GGTAGTCGACAAGGAGGAGAAA 59.176 50.000 19.50 0.00 0.00 2.52
2292 2317 2.478200 GCTACGTAAGAGGCTCAGTGTC 60.478 54.545 18.26 1.54 43.62 3.67
2538 2564 4.411327 GCAATGCGTCAATTTGCTAGTAA 58.589 39.130 0.00 0.00 41.86 2.24
2539 2565 5.036737 GCAATGCGTCAATTTGCTAGTAAT 58.963 37.500 0.00 0.00 41.86 1.89
2540 2566 6.198687 GCAATGCGTCAATTTGCTAGTAATA 58.801 36.000 0.00 0.00 41.86 0.98
2553 2579 9.982291 ATTTGCTAGTAATATGTTTGTGTTACG 57.018 29.630 0.00 0.00 33.46 3.18
2557 2583 8.749499 GCTAGTAATATGTTTGTGTTACGGTAG 58.251 37.037 0.00 0.00 33.46 3.18
2571 2597 5.629020 TGTTACGGTAGATACGTTGTTTCAC 59.371 40.000 0.00 0.00 42.70 3.18
2582 2608 5.164606 ACGTTGTTTCACTTGACCATTAC 57.835 39.130 0.00 0.00 0.00 1.89
2584 2610 5.204833 CGTTGTTTCACTTGACCATTACTG 58.795 41.667 0.00 0.00 0.00 2.74
2598 2624 8.518430 TGACCATTACTGCATTTAATGTACAT 57.482 30.769 19.44 1.41 35.84 2.29
2599 2625 8.404765 TGACCATTACTGCATTTAATGTACATG 58.595 33.333 9.63 0.00 35.84 3.21
2600 2626 8.292444 ACCATTACTGCATTTAATGTACATGT 57.708 30.769 9.63 2.69 35.84 3.21
2601 2627 9.402320 ACCATTACTGCATTTAATGTACATGTA 57.598 29.630 9.63 0.08 35.84 2.29
2602 2628 9.663904 CCATTACTGCATTTAATGTACATGTAC 57.336 33.333 25.99 25.99 35.84 2.90
2752 2780 7.174772 AGTCAATAATGTGCATGAGTTTGTACA 59.825 33.333 0.00 0.00 44.50 2.90
2872 2901 4.039124 TGAGACAACTGTGACAGCTCAATA 59.961 41.667 13.37 0.00 34.37 1.90
2873 2902 4.960938 AGACAACTGTGACAGCTCAATAA 58.039 39.130 13.37 0.00 34.37 1.40
2989 3020 8.426489 ACTTTAACTTGTACTCCACATTAGACA 58.574 33.333 0.00 0.00 36.90 3.41
3224 3267 8.794335 GAGGTCTGTTTATTATCAACCTCTTT 57.206 34.615 10.59 0.00 45.02 2.52
3253 3297 3.191162 GGCATGTTTTCAGCATGTCACTA 59.809 43.478 5.19 0.00 45.30 2.74
3347 3401 3.137176 TGATCCTATCCCCTGCAAAAGAG 59.863 47.826 0.00 0.00 0.00 2.85
3348 3402 2.845659 TCCTATCCCCTGCAAAAGAGA 58.154 47.619 0.00 0.00 0.00 3.10
3349 3403 3.189606 TCCTATCCCCTGCAAAAGAGAA 58.810 45.455 0.00 0.00 0.00 2.87
3350 3404 3.054361 TCCTATCCCCTGCAAAAGAGAAC 60.054 47.826 0.00 0.00 0.00 3.01
3351 3405 3.054065 CCTATCCCCTGCAAAAGAGAACT 60.054 47.826 0.00 0.00 0.00 3.01
3352 3406 2.276732 TCCCCTGCAAAAGAGAACTG 57.723 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.283321 CTAGGGCTCCTGCTCCTTTTT 59.717 52.381 4.16 0.00 41.57 1.94
22 23 0.915364 CTAGGGCTCCTGCTCCTTTT 59.085 55.000 4.16 0.00 41.57 2.27
23 24 1.631071 GCTAGGGCTCCTGCTCCTTT 61.631 60.000 4.16 0.00 41.57 3.11
24 25 2.069430 GCTAGGGCTCCTGCTCCTT 61.069 63.158 4.16 0.00 41.57 3.36
25 26 2.445654 GCTAGGGCTCCTGCTCCT 60.446 66.667 4.16 0.00 41.57 3.69
26 27 3.922640 CGCTAGGGCTCCTGCTCC 61.923 72.222 4.16 0.00 41.57 4.70
27 28 3.145422 GACGCTAGGGCTCCTGCTC 62.145 68.421 6.73 0.00 40.76 4.26
28 29 3.151022 GACGCTAGGGCTCCTGCT 61.151 66.667 6.73 0.00 39.59 4.24
29 30 4.577246 CGACGCTAGGGCTCCTGC 62.577 72.222 6.73 5.22 34.61 4.85
30 31 4.577246 GCGACGCTAGGGCTCCTG 62.577 72.222 13.73 0.00 34.61 3.86
31 32 2.905935 TTAGCGACGCTAGGGCTCCT 62.906 60.000 26.87 3.70 42.34 3.69
32 33 2.012902 TTTAGCGACGCTAGGGCTCC 62.013 60.000 26.87 0.00 42.34 4.70
33 34 0.595310 CTTTAGCGACGCTAGGGCTC 60.595 60.000 26.87 3.33 42.34 4.70
34 35 1.321074 ACTTTAGCGACGCTAGGGCT 61.321 55.000 26.87 10.41 42.34 5.19
35 36 0.459759 AACTTTAGCGACGCTAGGGC 60.460 55.000 26.87 0.00 42.34 5.19
36 37 1.278238 CAACTTTAGCGACGCTAGGG 58.722 55.000 26.87 23.66 42.34 3.53
37 38 1.278238 CCAACTTTAGCGACGCTAGG 58.722 55.000 26.87 23.96 42.34 3.02
38 39 1.278238 CCCAACTTTAGCGACGCTAG 58.722 55.000 26.87 21.43 42.34 3.42
39 40 0.108520 CCCCAACTTTAGCGACGCTA 60.109 55.000 25.04 25.04 40.44 4.26
40 41 1.375523 CCCCAACTTTAGCGACGCT 60.376 57.895 27.45 27.45 43.41 5.07
41 42 0.743345 ATCCCCAACTTTAGCGACGC 60.743 55.000 13.03 13.03 0.00 5.19
42 43 1.664151 GAATCCCCAACTTTAGCGACG 59.336 52.381 0.00 0.00 0.00 5.12
43 44 1.664151 CGAATCCCCAACTTTAGCGAC 59.336 52.381 0.00 0.00 0.00 5.19
44 45 1.551430 TCGAATCCCCAACTTTAGCGA 59.449 47.619 0.00 0.00 0.00 4.93
45 46 1.664151 GTCGAATCCCCAACTTTAGCG 59.336 52.381 0.00 0.00 0.00 4.26
46 47 2.987232 AGTCGAATCCCCAACTTTAGC 58.013 47.619 0.00 0.00 0.00 3.09
47 48 3.939592 GGAAGTCGAATCCCCAACTTTAG 59.060 47.826 7.17 0.00 32.34 1.85
48 49 3.585732 AGGAAGTCGAATCCCCAACTTTA 59.414 43.478 13.46 0.00 37.71 1.85
49 50 2.375509 AGGAAGTCGAATCCCCAACTTT 59.624 45.455 13.46 0.00 37.71 2.66
50 51 1.985895 AGGAAGTCGAATCCCCAACTT 59.014 47.619 13.46 0.00 37.71 2.66
51 52 1.555533 GAGGAAGTCGAATCCCCAACT 59.444 52.381 13.46 0.00 37.71 3.16
52 53 2.025589 GAGGAAGTCGAATCCCCAAC 57.974 55.000 13.46 1.71 37.71 3.77
63 64 4.452733 CCGTGGGGCGAGGAAGTC 62.453 72.222 0.00 0.00 44.77 3.01
73 74 1.032114 GGATGAGAAAAGCCGTGGGG 61.032 60.000 0.00 0.00 0.00 4.96
74 75 1.032114 GGGATGAGAAAAGCCGTGGG 61.032 60.000 0.00 0.00 0.00 4.61
75 76 0.322456 TGGGATGAGAAAAGCCGTGG 60.322 55.000 0.00 0.00 0.00 4.94
76 77 1.755179 ATGGGATGAGAAAAGCCGTG 58.245 50.000 0.00 0.00 0.00 4.94
77 78 2.094675 CAATGGGATGAGAAAAGCCGT 58.905 47.619 0.00 0.00 0.00 5.68
78 79 1.406539 CCAATGGGATGAGAAAAGCCG 59.593 52.381 0.00 0.00 35.59 5.52
79 80 2.738743 TCCAATGGGATGAGAAAAGCC 58.261 47.619 0.00 0.00 38.64 4.35
85 86 9.474054 CACTTGATAGTGTCCAATGGGATGAGA 62.474 44.444 0.00 0.00 45.46 3.27
86 87 7.405175 CACTTGATAGTGTCCAATGGGATGAG 61.405 46.154 0.00 0.00 45.46 2.90
87 88 5.629834 CACTTGATAGTGTCCAATGGGATGA 60.630 44.000 0.00 0.00 45.46 2.92
88 89 4.577693 CACTTGATAGTGTCCAATGGGATG 59.422 45.833 0.00 0.00 45.46 3.51
89 90 4.785301 CACTTGATAGTGTCCAATGGGAT 58.215 43.478 0.00 0.00 45.46 3.85
90 91 4.220693 CACTTGATAGTGTCCAATGGGA 57.779 45.455 0.00 0.00 45.46 4.37
100 101 8.344831 TGTTTGAGATCAAAACACTTGATAGTG 58.655 33.333 17.86 3.87 46.41 2.74
101 102 8.450578 TGTTTGAGATCAAAACACTTGATAGT 57.549 30.769 17.86 0.00 46.08 2.12
102 103 9.903682 AATGTTTGAGATCAAAACACTTGATAG 57.096 29.630 21.90 0.00 46.08 2.08
104 105 9.252962 GAAATGTTTGAGATCAAAACACTTGAT 57.747 29.630 21.90 9.03 46.08 2.57
105 106 8.249638 TGAAATGTTTGAGATCAAAACACTTGA 58.750 29.630 21.90 13.23 46.08 3.02
106 107 8.410030 TGAAATGTTTGAGATCAAAACACTTG 57.590 30.769 21.90 0.00 46.08 3.16
107 108 9.603921 ATTGAAATGTTTGAGATCAAAACACTT 57.396 25.926 21.90 18.93 46.08 3.16
108 109 9.252962 GATTGAAATGTTTGAGATCAAAACACT 57.747 29.630 21.90 13.15 46.08 3.55
109 110 9.252962 AGATTGAAATGTTTGAGATCAAAACAC 57.747 29.630 21.90 13.68 46.08 3.32
110 111 9.820725 AAGATTGAAATGTTTGAGATCAAAACA 57.179 25.926 21.78 21.78 46.08 2.83
112 113 9.820725 ACAAGATTGAAATGTTTGAGATCAAAA 57.179 25.926 9.47 2.04 46.08 2.44
113 114 9.820725 AACAAGATTGAAATGTTTGAGATCAAA 57.179 25.926 3.91 3.91 42.90 2.69
114 115 9.467258 GAACAAGATTGAAATGTTTGAGATCAA 57.533 29.630 0.00 0.00 37.41 2.57
115 116 8.853126 AGAACAAGATTGAAATGTTTGAGATCA 58.147 29.630 0.00 0.00 37.41 2.92
116 117 9.688592 AAGAACAAGATTGAAATGTTTGAGATC 57.311 29.630 0.00 0.00 37.41 2.75
117 118 9.472361 CAAGAACAAGATTGAAATGTTTGAGAT 57.528 29.630 0.00 0.00 37.41 2.75
118 119 7.922278 CCAAGAACAAGATTGAAATGTTTGAGA 59.078 33.333 0.00 0.00 37.41 3.27
119 120 7.922278 TCCAAGAACAAGATTGAAATGTTTGAG 59.078 33.333 0.00 0.00 37.41 3.02
120 121 7.780064 TCCAAGAACAAGATTGAAATGTTTGA 58.220 30.769 0.00 0.00 37.41 2.69
121 122 8.492748 CATCCAAGAACAAGATTGAAATGTTTG 58.507 33.333 0.00 0.00 37.41 2.93
122 123 8.423349 TCATCCAAGAACAAGATTGAAATGTTT 58.577 29.630 0.00 0.00 37.41 2.83
123 124 7.954835 TCATCCAAGAACAAGATTGAAATGTT 58.045 30.769 0.00 0.00 39.82 2.71
124 125 7.528996 TCATCCAAGAACAAGATTGAAATGT 57.471 32.000 0.00 0.00 0.00 2.71
125 126 8.821147 TTTCATCCAAGAACAAGATTGAAATG 57.179 30.769 0.00 0.00 0.00 2.32
126 127 9.431887 CATTTCATCCAAGAACAAGATTGAAAT 57.568 29.630 0.00 0.00 33.28 2.17
127 128 8.423349 ACATTTCATCCAAGAACAAGATTGAAA 58.577 29.630 0.00 0.00 0.00 2.69
128 129 7.868922 CACATTTCATCCAAGAACAAGATTGAA 59.131 33.333 0.00 0.00 0.00 2.69
129 130 7.014518 ACACATTTCATCCAAGAACAAGATTGA 59.985 33.333 0.00 0.00 0.00 2.57
130 131 7.149973 ACACATTTCATCCAAGAACAAGATTG 58.850 34.615 0.00 0.00 0.00 2.67
131 132 7.294017 ACACATTTCATCCAAGAACAAGATT 57.706 32.000 0.00 0.00 0.00 2.40
132 133 6.906157 ACACATTTCATCCAAGAACAAGAT 57.094 33.333 0.00 0.00 0.00 2.40
133 134 7.223584 TCTACACATTTCATCCAAGAACAAGA 58.776 34.615 0.00 0.00 0.00 3.02
134 135 7.439157 TCTACACATTTCATCCAAGAACAAG 57.561 36.000 0.00 0.00 0.00 3.16
135 136 7.815840 TTCTACACATTTCATCCAAGAACAA 57.184 32.000 0.00 0.00 0.00 2.83
136 137 7.121168 GGATTCTACACATTTCATCCAAGAACA 59.879 37.037 0.00 0.00 31.99 3.18
137 138 7.121168 TGGATTCTACACATTTCATCCAAGAAC 59.879 37.037 0.00 0.00 37.77 3.01
138 139 7.174413 TGGATTCTACACATTTCATCCAAGAA 58.826 34.615 0.00 0.00 37.77 2.52
139 140 6.720309 TGGATTCTACACATTTCATCCAAGA 58.280 36.000 0.00 0.00 37.77 3.02
140 141 7.578310 ATGGATTCTACACATTTCATCCAAG 57.422 36.000 2.91 0.00 42.64 3.61
141 142 7.959658 AATGGATTCTACACATTTCATCCAA 57.040 32.000 2.91 0.00 42.64 3.53
142 143 9.473007 TTTAATGGATTCTACACATTTCATCCA 57.527 29.630 1.28 1.28 43.34 3.41
145 146 9.787532 CGTTTTAATGGATTCTACACATTTCAT 57.212 29.630 0.00 0.00 36.36 2.57
146 147 9.004717 TCGTTTTAATGGATTCTACACATTTCA 57.995 29.630 0.00 0.00 36.36 2.69
147 148 9.834628 TTCGTTTTAATGGATTCTACACATTTC 57.165 29.630 0.00 0.00 36.36 2.17
148 149 9.840427 CTTCGTTTTAATGGATTCTACACATTT 57.160 29.630 0.00 0.00 36.36 2.32
149 150 7.968405 GCTTCGTTTTAATGGATTCTACACATT 59.032 33.333 0.00 0.00 38.31 2.71
150 151 7.415206 GGCTTCGTTTTAATGGATTCTACACAT 60.415 37.037 0.00 0.00 0.00 3.21
151 152 6.128117 GGCTTCGTTTTAATGGATTCTACACA 60.128 38.462 0.00 0.00 0.00 3.72
152 153 6.128117 TGGCTTCGTTTTAATGGATTCTACAC 60.128 38.462 0.00 0.00 0.00 2.90
153 154 5.941058 TGGCTTCGTTTTAATGGATTCTACA 59.059 36.000 0.00 0.00 0.00 2.74
154 155 6.255950 GTGGCTTCGTTTTAATGGATTCTAC 58.744 40.000 0.00 0.00 0.00 2.59
155 156 5.355910 GGTGGCTTCGTTTTAATGGATTCTA 59.644 40.000 0.00 0.00 0.00 2.10
156 157 4.157840 GGTGGCTTCGTTTTAATGGATTCT 59.842 41.667 0.00 0.00 0.00 2.40
157 158 4.157840 AGGTGGCTTCGTTTTAATGGATTC 59.842 41.667 0.00 0.00 0.00 2.52
158 159 4.086457 AGGTGGCTTCGTTTTAATGGATT 58.914 39.130 0.00 0.00 0.00 3.01
159 160 3.697166 AGGTGGCTTCGTTTTAATGGAT 58.303 40.909 0.00 0.00 0.00 3.41
160 161 3.149005 AGGTGGCTTCGTTTTAATGGA 57.851 42.857 0.00 0.00 0.00 3.41
161 162 3.574614 CAAGGTGGCTTCGTTTTAATGG 58.425 45.455 0.00 0.00 0.00 3.16
162 163 2.986479 GCAAGGTGGCTTCGTTTTAATG 59.014 45.455 0.00 0.00 0.00 1.90
163 164 2.029380 GGCAAGGTGGCTTCGTTTTAAT 60.029 45.455 0.00 0.00 40.14 1.40
164 165 1.338655 GGCAAGGTGGCTTCGTTTTAA 59.661 47.619 0.00 0.00 40.14 1.52
165 166 0.955905 GGCAAGGTGGCTTCGTTTTA 59.044 50.000 0.00 0.00 40.14 1.52
166 167 1.739667 GGCAAGGTGGCTTCGTTTT 59.260 52.632 0.00 0.00 40.14 2.43
167 168 2.200337 GGGCAAGGTGGCTTCGTTT 61.200 57.895 1.60 0.00 43.20 3.60
168 169 2.597510 GGGCAAGGTGGCTTCGTT 60.598 61.111 1.60 0.00 43.20 3.85
187 188 8.977574 GGTCTAAGACTAAAACGAACCGGAGG 62.978 50.000 9.46 0.00 43.21 4.30
188 189 4.855937 GTCTAAGACTAAAACGAACCGGAG 59.144 45.833 9.46 0.76 0.00 4.63
189 190 4.321230 GGTCTAAGACTAAAACGAACCGGA 60.321 45.833 9.46 0.00 32.47 5.14
190 191 3.922850 GGTCTAAGACTAAAACGAACCGG 59.077 47.826 0.00 0.00 32.47 5.28
191 192 3.922850 GGGTCTAAGACTAAAACGAACCG 59.077 47.826 0.00 0.00 32.47 4.44
192 193 4.928020 CAGGGTCTAAGACTAAAACGAACC 59.072 45.833 0.00 0.00 32.47 3.62
193 194 5.536260 ACAGGGTCTAAGACTAAAACGAAC 58.464 41.667 0.00 0.00 32.47 3.95
194 195 5.796424 ACAGGGTCTAAGACTAAAACGAA 57.204 39.130 0.00 0.00 32.47 3.85
195 196 5.563475 CGAACAGGGTCTAAGACTAAAACGA 60.563 44.000 0.00 0.00 32.47 3.85
196 197 4.620184 CGAACAGGGTCTAAGACTAAAACG 59.380 45.833 0.00 0.00 32.47 3.60
197 198 4.928020 CCGAACAGGGTCTAAGACTAAAAC 59.072 45.833 0.00 0.00 35.97 2.43
198 199 4.562143 GCCGAACAGGGTCTAAGACTAAAA 60.562 45.833 0.00 0.00 41.48 1.52
199 200 3.056322 GCCGAACAGGGTCTAAGACTAAA 60.056 47.826 0.00 0.00 41.48 1.85
200 201 2.494870 GCCGAACAGGGTCTAAGACTAA 59.505 50.000 0.00 0.00 41.48 2.24
201 202 2.097825 GCCGAACAGGGTCTAAGACTA 58.902 52.381 0.00 0.00 41.48 2.59
202 203 0.896226 GCCGAACAGGGTCTAAGACT 59.104 55.000 0.00 0.00 41.48 3.24
203 204 0.606604 TGCCGAACAGGGTCTAAGAC 59.393 55.000 0.00 0.00 41.48 3.01
204 205 1.001633 GTTGCCGAACAGGGTCTAAGA 59.998 52.381 0.00 0.00 41.48 2.10
205 206 1.439679 GTTGCCGAACAGGGTCTAAG 58.560 55.000 0.00 0.00 41.48 2.18
206 207 0.035739 GGTTGCCGAACAGGGTCTAA 59.964 55.000 0.00 0.00 41.48 2.10
207 208 1.675219 GGTTGCCGAACAGGGTCTA 59.325 57.895 0.00 0.00 41.48 2.59
208 209 2.430367 GGTTGCCGAACAGGGTCT 59.570 61.111 0.00 0.00 41.48 3.85
209 210 2.671963 GGGTTGCCGAACAGGGTC 60.672 66.667 0.00 0.00 41.48 4.46
210 211 2.692273 GAAGGGTTGCCGAACAGGGT 62.692 60.000 0.00 0.00 41.48 4.34
211 212 1.971695 GAAGGGTTGCCGAACAGGG 60.972 63.158 0.00 0.00 41.48 4.45
212 213 1.228124 TGAAGGGTTGCCGAACAGG 60.228 57.895 0.00 0.00 44.97 4.00
213 214 0.535102 ACTGAAGGGTTGCCGAACAG 60.535 55.000 0.00 0.00 33.27 3.16
214 215 0.534203 GACTGAAGGGTTGCCGAACA 60.534 55.000 0.00 0.00 33.27 3.18
215 216 1.235281 GGACTGAAGGGTTGCCGAAC 61.235 60.000 0.00 0.00 0.00 3.95
216 217 1.072505 GGACTGAAGGGTTGCCGAA 59.927 57.895 0.00 0.00 0.00 4.30
217 218 1.827399 GAGGACTGAAGGGTTGCCGA 61.827 60.000 0.00 0.00 0.00 5.54
218 219 1.376037 GAGGACTGAAGGGTTGCCG 60.376 63.158 0.00 0.00 0.00 5.69
219 220 1.002011 GGAGGACTGAAGGGTTGCC 60.002 63.158 0.00 0.00 0.00 4.52
220 221 0.035915 GAGGAGGACTGAAGGGTTGC 60.036 60.000 0.00 0.00 0.00 4.17
221 222 1.650528 AGAGGAGGACTGAAGGGTTG 58.349 55.000 0.00 0.00 0.00 3.77
222 223 2.111972 TGTAGAGGAGGACTGAAGGGTT 59.888 50.000 0.00 0.00 0.00 4.11
223 224 1.717077 TGTAGAGGAGGACTGAAGGGT 59.283 52.381 0.00 0.00 0.00 4.34
224 225 2.024846 TCTGTAGAGGAGGACTGAAGGG 60.025 54.545 0.00 0.00 0.00 3.95
225 226 3.287222 CTCTGTAGAGGAGGACTGAAGG 58.713 54.545 0.86 0.00 38.48 3.46
226 227 3.694072 CACTCTGTAGAGGAGGACTGAAG 59.306 52.174 13.08 0.00 46.13 3.02
227 228 3.562393 CCACTCTGTAGAGGAGGACTGAA 60.562 52.174 13.08 0.00 46.13 3.02
228 229 2.025793 CCACTCTGTAGAGGAGGACTGA 60.026 54.545 13.08 0.00 46.13 3.41
229 230 2.025793 TCCACTCTGTAGAGGAGGACTG 60.026 54.545 16.52 5.13 46.13 3.51
230 231 2.280103 TCCACTCTGTAGAGGAGGACT 58.720 52.381 16.52 0.00 46.13 3.85
231 232 2.810870 TCCACTCTGTAGAGGAGGAC 57.189 55.000 16.52 0.00 46.13 3.85
235 236 1.032657 GCGCTCCACTCTGTAGAGGA 61.033 60.000 13.08 2.33 46.13 3.71
236 237 1.435515 GCGCTCCACTCTGTAGAGG 59.564 63.158 13.08 2.86 46.13 3.69
238 239 3.052620 GCGCGCTCCACTCTGTAGA 62.053 63.158 26.67 0.00 0.00 2.59
239 240 2.580867 GCGCGCTCCACTCTGTAG 60.581 66.667 26.67 0.00 0.00 2.74
240 241 2.428960 TTTGCGCGCTCCACTCTGTA 62.429 55.000 33.29 4.14 0.00 2.74
241 242 3.807631 TTTGCGCGCTCCACTCTGT 62.808 57.895 33.29 0.00 0.00 3.41
242 243 3.020026 CTTTGCGCGCTCCACTCTG 62.020 63.158 33.29 9.56 0.00 3.35
243 244 2.740055 CTTTGCGCGCTCCACTCT 60.740 61.111 33.29 0.00 0.00 3.24
244 245 4.451652 GCTTTGCGCGCTCCACTC 62.452 66.667 33.29 12.42 0.00 3.51
255 256 0.591170 TGGCTAAGACAACGCTTTGC 59.409 50.000 2.32 0.00 42.98 3.68
256 257 1.873591 AGTGGCTAAGACAACGCTTTG 59.126 47.619 0.65 0.65 38.83 2.77
257 258 2.143925 GAGTGGCTAAGACAACGCTTT 58.856 47.619 0.00 0.00 0.00 3.51
258 259 1.608283 GGAGTGGCTAAGACAACGCTT 60.608 52.381 0.00 0.00 0.00 4.68
259 260 0.037232 GGAGTGGCTAAGACAACGCT 60.037 55.000 0.00 0.00 0.00 5.07
260 261 0.037232 AGGAGTGGCTAAGACAACGC 60.037 55.000 0.00 0.00 0.00 4.84
261 262 1.272490 TGAGGAGTGGCTAAGACAACG 59.728 52.381 0.00 0.00 0.00 4.10
262 263 3.402628 TTGAGGAGTGGCTAAGACAAC 57.597 47.619 0.00 0.00 0.00 3.32
263 264 4.640771 ATTTGAGGAGTGGCTAAGACAA 57.359 40.909 0.00 0.00 0.00 3.18
264 265 4.202461 ACAATTTGAGGAGTGGCTAAGACA 60.202 41.667 2.79 0.00 0.00 3.41
265 266 4.327680 ACAATTTGAGGAGTGGCTAAGAC 58.672 43.478 2.79 0.00 0.00 3.01
266 267 4.640771 ACAATTTGAGGAGTGGCTAAGA 57.359 40.909 2.79 0.00 0.00 2.10
267 268 5.940470 AGTTACAATTTGAGGAGTGGCTAAG 59.060 40.000 2.79 0.00 0.00 2.18
268 269 5.705441 CAGTTACAATTTGAGGAGTGGCTAA 59.295 40.000 2.79 0.00 0.00 3.09
269 270 5.221843 ACAGTTACAATTTGAGGAGTGGCTA 60.222 40.000 2.79 0.00 0.00 3.93
270 271 4.074970 CAGTTACAATTTGAGGAGTGGCT 58.925 43.478 2.79 0.00 0.00 4.75
271 272 3.821033 ACAGTTACAATTTGAGGAGTGGC 59.179 43.478 2.79 0.00 0.00 5.01
272 273 4.216257 CCACAGTTACAATTTGAGGAGTGG 59.784 45.833 2.79 10.04 37.12 4.00
273 274 4.216257 CCCACAGTTACAATTTGAGGAGTG 59.784 45.833 2.79 5.36 0.00 3.51
274 275 4.398319 CCCACAGTTACAATTTGAGGAGT 58.602 43.478 2.79 0.00 0.00 3.85
275 276 3.191371 GCCCACAGTTACAATTTGAGGAG 59.809 47.826 2.79 0.00 0.00 3.69
276 277 3.153919 GCCCACAGTTACAATTTGAGGA 58.846 45.455 2.79 0.00 0.00 3.71
277 278 2.231235 GGCCCACAGTTACAATTTGAGG 59.769 50.000 2.79 0.00 0.00 3.86
278 279 2.890311 TGGCCCACAGTTACAATTTGAG 59.110 45.455 0.00 0.00 0.00 3.02
279 280 2.625790 GTGGCCCACAGTTACAATTTGA 59.374 45.455 9.55 0.00 34.08 2.69
280 281 2.627699 AGTGGCCCACAGTTACAATTTG 59.372 45.455 17.80 0.00 36.74 2.32
281 282 2.890945 GAGTGGCCCACAGTTACAATTT 59.109 45.455 17.80 0.00 36.74 1.82
282 283 2.514803 GAGTGGCCCACAGTTACAATT 58.485 47.619 17.80 0.00 36.74 2.32
283 284 1.271926 GGAGTGGCCCACAGTTACAAT 60.272 52.381 17.80 0.00 36.74 2.71
284 285 0.109723 GGAGTGGCCCACAGTTACAA 59.890 55.000 17.80 0.00 36.74 2.41
285 286 1.758592 GGAGTGGCCCACAGTTACA 59.241 57.895 17.80 0.00 36.74 2.41
286 287 1.375523 CGGAGTGGCCCACAGTTAC 60.376 63.158 17.80 0.00 36.74 2.50
287 288 3.065306 CGGAGTGGCCCACAGTTA 58.935 61.111 17.80 0.00 36.74 2.24
288 289 4.643387 GCGGAGTGGCCCACAGTT 62.643 66.667 17.80 0.00 36.74 3.16
290 291 4.335647 AAGCGGAGTGGCCCACAG 62.336 66.667 17.80 8.13 36.74 3.66
291 292 4.329545 GAAGCGGAGTGGCCCACA 62.330 66.667 17.80 0.00 36.74 4.17
292 293 4.329545 TGAAGCGGAGTGGCCCAC 62.330 66.667 5.50 5.50 34.10 4.61
293 294 4.020617 CTGAAGCGGAGTGGCCCA 62.021 66.667 0.00 0.00 0.00 5.36
295 296 3.984193 ATGCTGAAGCGGAGTGGCC 62.984 63.158 0.00 0.00 45.83 5.36
296 297 2.437359 ATGCTGAAGCGGAGTGGC 60.437 61.111 0.00 0.00 45.83 5.01
297 298 0.674581 TTCATGCTGAAGCGGAGTGG 60.675 55.000 0.00 0.00 45.83 4.00
298 299 0.725686 CTTCATGCTGAAGCGGAGTG 59.274 55.000 11.34 0.00 46.03 3.51
299 300 3.149899 CTTCATGCTGAAGCGGAGT 57.850 52.632 11.34 0.00 46.03 3.85
310 311 2.159282 CCTCCATTCAGCAACTTCATGC 60.159 50.000 0.00 0.00 46.78 4.06
311 312 3.087031 ACCTCCATTCAGCAACTTCATG 58.913 45.455 0.00 0.00 0.00 3.07
312 313 3.087031 CACCTCCATTCAGCAACTTCAT 58.913 45.455 0.00 0.00 0.00 2.57
313 314 2.158623 ACACCTCCATTCAGCAACTTCA 60.159 45.455 0.00 0.00 0.00 3.02
314 315 2.485814 GACACCTCCATTCAGCAACTTC 59.514 50.000 0.00 0.00 0.00 3.01
315 316 2.508526 GACACCTCCATTCAGCAACTT 58.491 47.619 0.00 0.00 0.00 2.66
316 317 1.609061 CGACACCTCCATTCAGCAACT 60.609 52.381 0.00 0.00 0.00 3.16
317 318 0.798776 CGACACCTCCATTCAGCAAC 59.201 55.000 0.00 0.00 0.00 4.17
318 319 0.396435 ACGACACCTCCATTCAGCAA 59.604 50.000 0.00 0.00 0.00 3.91
319 320 0.396435 AACGACACCTCCATTCAGCA 59.604 50.000 0.00 0.00 0.00 4.41
320 321 2.271800 CTAACGACACCTCCATTCAGC 58.728 52.381 0.00 0.00 0.00 4.26
321 322 2.233922 ACCTAACGACACCTCCATTCAG 59.766 50.000 0.00 0.00 0.00 3.02
322 323 2.028476 CACCTAACGACACCTCCATTCA 60.028 50.000 0.00 0.00 0.00 2.57
323 324 2.618053 CACCTAACGACACCTCCATTC 58.382 52.381 0.00 0.00 0.00 2.67
324 325 1.278127 CCACCTAACGACACCTCCATT 59.722 52.381 0.00 0.00 0.00 3.16
325 326 0.902531 CCACCTAACGACACCTCCAT 59.097 55.000 0.00 0.00 0.00 3.41
326 327 0.470456 ACCACCTAACGACACCTCCA 60.470 55.000 0.00 0.00 0.00 3.86
327 328 0.683412 AACCACCTAACGACACCTCC 59.317 55.000 0.00 0.00 0.00 4.30
328 329 2.538512 AAACCACCTAACGACACCTC 57.461 50.000 0.00 0.00 0.00 3.85
329 330 5.018809 TCTATAAACCACCTAACGACACCT 58.981 41.667 0.00 0.00 0.00 4.00
330 331 5.329035 TCTATAAACCACCTAACGACACC 57.671 43.478 0.00 0.00 0.00 4.16
331 332 6.696148 CAGATCTATAAACCACCTAACGACAC 59.304 42.308 0.00 0.00 0.00 3.67
332 333 6.604396 TCAGATCTATAAACCACCTAACGACA 59.396 38.462 0.00 0.00 0.00 4.35
333 334 7.035840 TCAGATCTATAAACCACCTAACGAC 57.964 40.000 0.00 0.00 0.00 4.34
334 335 7.649533 TTCAGATCTATAAACCACCTAACGA 57.350 36.000 0.00 0.00 0.00 3.85
335 336 7.926555 ACATTCAGATCTATAAACCACCTAACG 59.073 37.037 0.00 0.00 0.00 3.18
339 340 8.993424 AGTTACATTCAGATCTATAAACCACCT 58.007 33.333 0.00 0.00 0.00 4.00
340 341 9.614792 AAGTTACATTCAGATCTATAAACCACC 57.385 33.333 0.00 0.00 0.00 4.61
408 409 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
409 410 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
410 411 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
411 412 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
412 413 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
413 414 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
414 415 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
415 416 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
416 417 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
417 418 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
418 419 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
445 446 7.499321 TTGCGGAGTTTCTTCTATACAAAAA 57.501 32.000 0.00 0.00 0.00 1.94
446 447 6.348213 GCTTGCGGAGTTTCTTCTATACAAAA 60.348 38.462 0.00 0.00 0.00 2.44
447 448 5.121768 GCTTGCGGAGTTTCTTCTATACAAA 59.878 40.000 0.00 0.00 0.00 2.83
448 449 4.630069 GCTTGCGGAGTTTCTTCTATACAA 59.370 41.667 0.00 0.00 0.00 2.41
449 450 4.181578 GCTTGCGGAGTTTCTTCTATACA 58.818 43.478 0.00 0.00 0.00 2.29
450 451 4.033014 GTGCTTGCGGAGTTTCTTCTATAC 59.967 45.833 0.00 0.00 0.00 1.47
451 452 4.181578 GTGCTTGCGGAGTTTCTTCTATA 58.818 43.478 0.00 0.00 0.00 1.31
452 453 3.003480 GTGCTTGCGGAGTTTCTTCTAT 58.997 45.455 0.00 0.00 0.00 1.98
453 454 2.413837 GTGCTTGCGGAGTTTCTTCTA 58.586 47.619 0.00 0.00 0.00 2.10
454 455 1.230324 GTGCTTGCGGAGTTTCTTCT 58.770 50.000 0.00 0.00 0.00 2.85
455 456 0.238553 GGTGCTTGCGGAGTTTCTTC 59.761 55.000 0.00 0.00 0.00 2.87
456 457 1.507141 CGGTGCTTGCGGAGTTTCTT 61.507 55.000 0.00 0.00 0.00 2.52
457 458 1.961277 CGGTGCTTGCGGAGTTTCT 60.961 57.895 0.00 0.00 0.00 2.52
458 459 2.556287 CGGTGCTTGCGGAGTTTC 59.444 61.111 0.00 0.00 0.00 2.78
459 460 3.660111 GCGGTGCTTGCGGAGTTT 61.660 61.111 0.00 0.00 0.00 2.66
467 468 3.798639 TTTTGACGCGCGGTGCTTG 62.799 57.895 35.22 4.42 43.27 4.01
468 469 3.578272 TTTTGACGCGCGGTGCTT 61.578 55.556 35.22 13.06 43.27 3.91
469 470 4.307908 GTTTTGACGCGCGGTGCT 62.308 61.111 35.22 13.53 43.27 4.40
471 472 3.456431 TTGGTTTTGACGCGCGGTG 62.456 57.895 35.22 7.05 0.00 4.94
472 473 3.175976 CTTGGTTTTGACGCGCGGT 62.176 57.895 35.22 19.76 0.00 5.68
473 474 2.426752 CTTGGTTTTGACGCGCGG 60.427 61.111 35.22 16.31 0.00 6.46
474 475 2.426752 CCTTGGTTTTGACGCGCG 60.427 61.111 30.96 30.96 0.00 6.86
475 476 0.526739 AAACCTTGGTTTTGACGCGC 60.527 50.000 5.73 0.00 0.00 6.86
476 477 1.196200 CAAACCTTGGTTTTGACGCG 58.804 50.000 14.41 3.53 36.24 6.01
477 478 2.570442 TCAAACCTTGGTTTTGACGC 57.430 45.000 14.41 0.00 37.91 5.19
478 479 4.102649 GAGTTCAAACCTTGGTTTTGACG 58.897 43.478 14.41 4.82 41.55 4.35
479 480 5.066968 TGAGTTCAAACCTTGGTTTTGAC 57.933 39.130 14.41 14.60 41.55 3.18
480 481 4.159506 CCTGAGTTCAAACCTTGGTTTTGA 59.840 41.667 14.41 12.31 40.42 2.69
481 482 4.081697 ACCTGAGTTCAAACCTTGGTTTTG 60.082 41.667 14.41 10.52 35.61 2.44
482 483 4.081697 CACCTGAGTTCAAACCTTGGTTTT 60.082 41.667 14.41 1.34 0.00 2.43
483 484 3.447229 CACCTGAGTTCAAACCTTGGTTT 59.553 43.478 11.60 11.60 0.00 3.27
484 485 3.023832 CACCTGAGTTCAAACCTTGGTT 58.976 45.455 0.00 0.00 0.00 3.67
485 486 2.654863 CACCTGAGTTCAAACCTTGGT 58.345 47.619 0.00 0.00 0.00 3.67
486 487 1.956477 CCACCTGAGTTCAAACCTTGG 59.044 52.381 0.00 0.00 0.00 3.61
487 488 1.956477 CCCACCTGAGTTCAAACCTTG 59.044 52.381 0.00 0.00 0.00 3.61
488 489 1.754201 GCCCACCTGAGTTCAAACCTT 60.754 52.381 0.00 0.00 0.00 3.50
489 490 0.178990 GCCCACCTGAGTTCAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
490 491 0.178990 AGCCCACCTGAGTTCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
491 492 0.954452 CAGCCCACCTGAGTTCAAAC 59.046 55.000 0.00 0.00 44.64 2.93
492 493 0.178992 CCAGCCCACCTGAGTTCAAA 60.179 55.000 0.00 0.00 44.64 2.69
493 494 1.455849 CCAGCCCACCTGAGTTCAA 59.544 57.895 0.00 0.00 44.64 2.69
494 495 3.160585 CCAGCCCACCTGAGTTCA 58.839 61.111 0.00 0.00 44.64 3.18
495 496 2.360475 GCCAGCCCACCTGAGTTC 60.360 66.667 0.00 0.00 44.64 3.01
496 497 3.177884 TGCCAGCCCACCTGAGTT 61.178 61.111 0.00 0.00 44.64 3.01
497 498 3.644606 CTGCCAGCCCACCTGAGT 61.645 66.667 0.00 0.00 44.64 3.41
500 501 3.272364 TTAGCTGCCAGCCCACCTG 62.272 63.158 14.25 0.00 43.77 4.00
501 502 2.935481 TTAGCTGCCAGCCCACCT 60.935 61.111 14.25 0.00 43.77 4.00
502 503 2.751837 GTTAGCTGCCAGCCCACC 60.752 66.667 14.25 0.00 43.77 4.61
503 504 2.751837 GGTTAGCTGCCAGCCCAC 60.752 66.667 14.25 10.20 43.77 4.61
504 505 2.935481 AGGTTAGCTGCCAGCCCA 60.935 61.111 14.25 0.00 43.77 5.36
505 506 2.124529 GAGGTTAGCTGCCAGCCC 60.125 66.667 14.25 7.78 43.77 5.19
506 507 1.451028 CTGAGGTTAGCTGCCAGCC 60.451 63.158 14.25 0.00 43.77 4.85
507 508 2.111582 GCTGAGGTTAGCTGCCAGC 61.112 63.158 9.13 9.13 42.52 4.85
508 509 4.215349 GCTGAGGTTAGCTGCCAG 57.785 61.111 11.07 0.00 40.52 4.85
514 515 1.451028 CTGGGCAGCTGAGGTTAGC 60.451 63.158 20.43 0.00 44.01 3.09
515 516 4.950479 CTGGGCAGCTGAGGTTAG 57.050 61.111 20.43 3.70 0.00 2.34
544 545 0.325602 TCATTTTAAGGACGGGGCGT 59.674 50.000 0.00 0.00 45.10 5.68
545 546 1.014352 CTCATTTTAAGGACGGGGCG 58.986 55.000 0.00 0.00 0.00 6.13
546 547 2.413310 TCTCATTTTAAGGACGGGGC 57.587 50.000 0.00 0.00 0.00 5.80
547 548 4.150897 TGATCTCATTTTAAGGACGGGG 57.849 45.455 0.00 0.00 0.00 5.73
548 549 4.335594 GGTTGATCTCATTTTAAGGACGGG 59.664 45.833 0.00 0.00 0.00 5.28
549 550 4.335594 GGGTTGATCTCATTTTAAGGACGG 59.664 45.833 0.00 0.00 0.00 4.79
550 551 4.941263 TGGGTTGATCTCATTTTAAGGACG 59.059 41.667 0.00 0.00 0.00 4.79
551 552 6.659242 TCTTGGGTTGATCTCATTTTAAGGAC 59.341 38.462 0.00 0.00 0.00 3.85
552 553 6.789268 TCTTGGGTTGATCTCATTTTAAGGA 58.211 36.000 0.00 0.00 0.00 3.36
553 554 6.405176 GCTCTTGGGTTGATCTCATTTTAAGG 60.405 42.308 0.00 0.00 0.00 2.69
554 555 6.376581 AGCTCTTGGGTTGATCTCATTTTAAG 59.623 38.462 0.00 0.00 0.00 1.85
555 556 6.248433 AGCTCTTGGGTTGATCTCATTTTAA 58.752 36.000 0.00 0.00 0.00 1.52
556 557 5.819991 AGCTCTTGGGTTGATCTCATTTTA 58.180 37.500 0.00 0.00 0.00 1.52
557 558 4.670765 AGCTCTTGGGTTGATCTCATTTT 58.329 39.130 0.00 0.00 0.00 1.82
558 559 4.313020 AGCTCTTGGGTTGATCTCATTT 57.687 40.909 0.00 0.00 0.00 2.32
559 560 5.189180 GTTAGCTCTTGGGTTGATCTCATT 58.811 41.667 0.00 0.00 0.00 2.57
560 561 4.384647 GGTTAGCTCTTGGGTTGATCTCAT 60.385 45.833 0.00 0.00 0.00 2.90
561 562 3.055094 GGTTAGCTCTTGGGTTGATCTCA 60.055 47.826 0.00 0.00 0.00 3.27
562 563 3.536570 GGTTAGCTCTTGGGTTGATCTC 58.463 50.000 0.00 0.00 0.00 2.75
563 564 2.239907 GGGTTAGCTCTTGGGTTGATCT 59.760 50.000 0.00 0.00 0.00 2.75
564 565 2.239907 AGGGTTAGCTCTTGGGTTGATC 59.760 50.000 0.00 0.00 0.00 2.92
565 566 2.239907 GAGGGTTAGCTCTTGGGTTGAT 59.760 50.000 0.00 0.00 0.00 2.57
566 567 1.628846 GAGGGTTAGCTCTTGGGTTGA 59.371 52.381 0.00 0.00 0.00 3.18
567 568 1.676014 CGAGGGTTAGCTCTTGGGTTG 60.676 57.143 0.00 0.00 0.00 3.77
568 569 0.613777 CGAGGGTTAGCTCTTGGGTT 59.386 55.000 0.00 0.00 0.00 4.11
569 570 0.544595 ACGAGGGTTAGCTCTTGGGT 60.545 55.000 0.00 0.00 30.61 4.51
570 571 0.613777 AACGAGGGTTAGCTCTTGGG 59.386 55.000 0.00 0.00 33.72 4.12
571 572 1.275291 TCAACGAGGGTTAGCTCTTGG 59.725 52.381 0.00 0.00 33.72 3.61
572 573 2.743636 TCAACGAGGGTTAGCTCTTG 57.256 50.000 0.00 0.00 33.72 3.02
573 574 3.764237 TTTCAACGAGGGTTAGCTCTT 57.236 42.857 0.00 0.00 33.72 2.85
574 575 3.983044 ATTTCAACGAGGGTTAGCTCT 57.017 42.857 0.00 0.00 33.72 4.09
575 576 5.372547 AAAATTTCAACGAGGGTTAGCTC 57.627 39.130 0.00 0.00 33.72 4.09
576 577 5.784578 AAAAATTTCAACGAGGGTTAGCT 57.215 34.783 0.00 0.00 33.72 3.32
596 597 4.484236 TCGCGGAGTTTCTCGTATAAAAA 58.516 39.130 6.13 0.00 0.00 1.94
597 598 4.095410 TCGCGGAGTTTCTCGTATAAAA 57.905 40.909 6.13 0.00 0.00 1.52
598 599 3.688272 CTCGCGGAGTTTCTCGTATAAA 58.312 45.455 6.13 0.00 0.00 1.40
599 600 2.540361 GCTCGCGGAGTTTCTCGTATAA 60.540 50.000 6.13 0.00 31.39 0.98
600 601 1.003116 GCTCGCGGAGTTTCTCGTATA 60.003 52.381 6.13 0.00 31.39 1.47
601 602 0.248539 GCTCGCGGAGTTTCTCGTAT 60.249 55.000 6.13 0.00 31.39 3.06
602 603 1.136147 GCTCGCGGAGTTTCTCGTA 59.864 57.895 6.13 0.00 31.39 3.43
603 604 2.126424 GCTCGCGGAGTTTCTCGT 60.126 61.111 6.13 0.00 31.39 4.18
604 605 2.126463 TGCTCGCGGAGTTTCTCG 60.126 61.111 6.13 0.00 31.39 4.04
605 606 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
606 607 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
607 608 1.741770 ATGGTGCTCGCGGAGTTTC 60.742 57.895 6.13 0.00 31.39 2.78
608 609 2.034879 CATGGTGCTCGCGGAGTTT 61.035 57.895 6.13 0.00 31.39 2.66
609 610 2.434884 CATGGTGCTCGCGGAGTT 60.435 61.111 6.13 0.00 31.39 3.01
615 616 2.839324 CTTTGACGCATGGTGCTCGC 62.839 60.000 0.00 0.00 42.25 5.03
616 617 1.133253 CTTTGACGCATGGTGCTCG 59.867 57.895 0.00 0.00 42.25 5.03
617 618 1.154150 GCTTTGACGCATGGTGCTC 60.154 57.895 0.00 0.00 42.25 4.26
618 619 2.629656 GGCTTTGACGCATGGTGCT 61.630 57.895 0.00 0.00 42.25 4.40
619 620 2.126346 GGCTTTGACGCATGGTGC 60.126 61.111 0.00 0.00 40.69 5.01
620 621 2.176546 CGGCTTTGACGCATGGTG 59.823 61.111 0.00 0.00 0.00 4.17
621 622 3.055719 CCGGCTTTGACGCATGGT 61.056 61.111 0.00 0.00 29.68 3.55
622 623 3.814268 CCCGGCTTTGACGCATGG 61.814 66.667 0.00 0.00 29.68 3.66
623 624 3.814268 CCCCGGCTTTGACGCATG 61.814 66.667 0.00 0.00 29.68 4.06
635 636 4.778143 CCCGAGTTCAAGCCCCGG 62.778 72.222 0.00 0.00 39.85 5.73
636 637 4.016706 ACCCGAGTTCAAGCCCCG 62.017 66.667 0.00 0.00 0.00 5.73
637 638 2.359975 CACCCGAGTTCAAGCCCC 60.360 66.667 0.00 0.00 0.00 5.80
638 639 2.359975 CCACCCGAGTTCAAGCCC 60.360 66.667 0.00 0.00 0.00 5.19
639 640 2.198304 ATCCCACCCGAGTTCAAGCC 62.198 60.000 0.00 0.00 0.00 4.35
640 641 1.026718 CATCCCACCCGAGTTCAAGC 61.027 60.000 0.00 0.00 0.00 4.01
641 642 0.392998 CCATCCCACCCGAGTTCAAG 60.393 60.000 0.00 0.00 0.00 3.02
642 643 1.682849 CCATCCCACCCGAGTTCAA 59.317 57.895 0.00 0.00 0.00 2.69
643 644 2.966732 GCCATCCCACCCGAGTTCA 61.967 63.158 0.00 0.00 0.00 3.18
644 645 2.124695 GCCATCCCACCCGAGTTC 60.125 66.667 0.00 0.00 0.00 3.01
645 646 2.933287 TGCCATCCCACCCGAGTT 60.933 61.111 0.00 0.00 0.00 3.01
646 647 3.402681 CTGCCATCCCACCCGAGT 61.403 66.667 0.00 0.00 0.00 4.18
647 648 4.864334 GCTGCCATCCCACCCGAG 62.864 72.222 0.00 0.00 0.00 4.63
648 649 3.993865 TAGCTGCCATCCCACCCGA 62.994 63.158 0.00 0.00 0.00 5.14
649 650 2.738213 GATAGCTGCCATCCCACCCG 62.738 65.000 0.00 0.00 0.00 5.28
650 651 1.073897 GATAGCTGCCATCCCACCC 59.926 63.158 0.00 0.00 0.00 4.61
651 652 1.073897 GGATAGCTGCCATCCCACC 59.926 63.158 15.16 0.00 36.69 4.61
652 653 4.809070 GGATAGCTGCCATCCCAC 57.191 61.111 15.16 0.00 36.69 4.61
688 689 3.823330 ATGAGGACGGGCGTCGAC 61.823 66.667 5.18 5.18 45.41 4.20
689 690 3.822192 CATGAGGACGGGCGTCGA 61.822 66.667 0.00 0.00 45.41 4.20
690 691 1.792118 TATCATGAGGACGGGCGTCG 61.792 60.000 0.09 0.00 45.41 5.12
691 692 0.387929 TTATCATGAGGACGGGCGTC 59.612 55.000 0.09 0.00 43.87 5.19
692 693 1.048601 ATTATCATGAGGACGGGCGT 58.951 50.000 0.09 0.00 0.00 5.68
693 694 1.000843 TCATTATCATGAGGACGGGCG 59.999 52.381 0.09 0.00 34.22 6.13
694 695 2.839486 TCATTATCATGAGGACGGGC 57.161 50.000 0.09 0.00 34.22 6.13
695 696 4.502016 CTCATCATTATCATGAGGACGGG 58.498 47.826 0.09 0.00 43.66 5.28
696 697 3.931468 GCTCATCATTATCATGAGGACGG 59.069 47.826 8.12 0.00 43.66 4.79
697 698 4.563061 TGCTCATCATTATCATGAGGACG 58.437 43.478 8.12 0.01 43.66 4.79
698 699 5.791666 TCTGCTCATCATTATCATGAGGAC 58.208 41.667 8.12 0.25 43.66 3.85
699 700 6.622427 ATCTGCTCATCATTATCATGAGGA 57.378 37.500 8.12 4.26 45.76 3.71
700 701 6.879458 TCAATCTGCTCATCATTATCATGAGG 59.121 38.462 8.12 0.00 45.18 3.86
701 702 7.907214 TCAATCTGCTCATCATTATCATGAG 57.093 36.000 1.58 1.58 46.99 2.90
702 703 8.685838 TTTCAATCTGCTCATCATTATCATGA 57.314 30.769 0.00 0.00 43.85 3.07
703 704 8.568794 ACTTTCAATCTGCTCATCATTATCATG 58.431 33.333 0.00 0.00 0.00 3.07
704 705 8.693120 ACTTTCAATCTGCTCATCATTATCAT 57.307 30.769 0.00 0.00 0.00 2.45
705 706 8.515695 AACTTTCAATCTGCTCATCATTATCA 57.484 30.769 0.00 0.00 0.00 2.15
706 707 9.798994 AAAACTTTCAATCTGCTCATCATTATC 57.201 29.630 0.00 0.00 0.00 1.75
732 733 4.752604 GCTTCGGGCTTCCATTTTTAAAAA 59.247 37.500 15.38 15.38 38.06 1.94
733 734 4.202264 TGCTTCGGGCTTCCATTTTTAAAA 60.202 37.500 0.00 0.00 42.39 1.52
734 735 3.322254 TGCTTCGGGCTTCCATTTTTAAA 59.678 39.130 3.33 0.00 42.39 1.52
735 736 2.894126 TGCTTCGGGCTTCCATTTTTAA 59.106 40.909 3.33 0.00 42.39 1.52
736 737 2.491693 CTGCTTCGGGCTTCCATTTTTA 59.508 45.455 3.33 0.00 42.39 1.52
737 738 1.273327 CTGCTTCGGGCTTCCATTTTT 59.727 47.619 3.33 0.00 42.39 1.94
738 739 0.890683 CTGCTTCGGGCTTCCATTTT 59.109 50.000 3.33 0.00 42.39 1.82
739 740 1.598701 GCTGCTTCGGGCTTCCATTT 61.599 55.000 0.00 0.00 42.39 2.32
740 741 2.048603 GCTGCTTCGGGCTTCCATT 61.049 57.895 0.00 0.00 42.39 3.16
741 742 2.439156 GCTGCTTCGGGCTTCCAT 60.439 61.111 0.00 0.00 42.39 3.41
742 743 3.952508 TGCTGCTTCGGGCTTCCA 61.953 61.111 0.00 0.00 42.39 3.53
743 744 3.435186 GTGCTGCTTCGGGCTTCC 61.435 66.667 0.00 0.00 42.39 3.46
744 745 3.793144 CGTGCTGCTTCGGGCTTC 61.793 66.667 0.00 0.00 42.39 3.86
764 765 1.227527 CTCCCGAATGGCACGCATA 60.228 57.895 0.00 0.00 0.00 3.14
790 800 1.599518 TGGCTCCGTTTCGTGCATT 60.600 52.632 0.00 0.00 0.00 3.56
805 815 4.120331 GGGCTGCACGAATGTGGC 62.120 66.667 0.50 0.00 46.51 5.01
1671 1693 1.805945 GAGCTTGTGGACGCGGTAG 60.806 63.158 12.47 0.00 0.00 3.18
1797 1819 0.392998 TGATCGCCTCCTCTTTTGCC 60.393 55.000 0.00 0.00 0.00 4.52
1824 1846 3.396260 TTCGGTTCTTCTTTGATCGGT 57.604 42.857 0.00 0.00 0.00 4.69
1933 1955 1.339055 CGGTGAATCAGCCTTCTTCCA 60.339 52.381 6.88 0.00 0.00 3.53
1934 1956 1.373570 CGGTGAATCAGCCTTCTTCC 58.626 55.000 6.88 0.00 0.00 3.46
1944 1966 3.030168 ATCCGGCTGCGGTGAATCA 62.030 57.895 0.00 0.00 0.00 2.57
1962 1984 3.369052 CCACCATAGAGCTACCGAAAACA 60.369 47.826 0.00 0.00 0.00 2.83
2004 2029 6.446781 ACATTCAATTTCGATGCATCTTCT 57.553 33.333 23.73 3.84 0.00 2.85
2292 2317 0.179161 AATCCTCGTCGTCTTCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
2538 2564 7.483307 ACGTATCTACCGTAACACAAACATAT 58.517 34.615 0.00 0.00 36.65 1.78
2539 2565 6.851609 ACGTATCTACCGTAACACAAACATA 58.148 36.000 0.00 0.00 36.65 2.29
2540 2566 5.713025 ACGTATCTACCGTAACACAAACAT 58.287 37.500 0.00 0.00 36.65 2.71
2553 2579 5.119743 GGTCAAGTGAAACAACGTATCTACC 59.880 44.000 0.00 0.00 41.43 3.18
2557 2583 5.607119 ATGGTCAAGTGAAACAACGTATC 57.393 39.130 0.00 0.00 41.43 2.24
2561 2587 5.204833 CAGTAATGGTCAAGTGAAACAACG 58.795 41.667 0.00 0.00 41.43 4.10
2571 2597 8.458052 TGTACATTAAATGCAGTAATGGTCAAG 58.542 33.333 25.37 9.46 41.35 3.02
2691 2718 5.995446 AGAGGATACAAATCAAGGAACCTC 58.005 41.667 0.00 0.00 40.83 3.85
2771 2799 8.913487 AATGCATGAAACATAGATCAGTGATA 57.087 30.769 5.38 0.00 0.00 2.15
2772 2800 7.818997 AATGCATGAAACATAGATCAGTGAT 57.181 32.000 4.98 4.98 0.00 3.06
2970 3001 5.578727 GCTCTTGTCTAATGTGGAGTACAAG 59.421 44.000 0.00 0.00 43.77 3.16
2989 3020 2.622436 GAGCATACGGAACAAGCTCTT 58.378 47.619 0.00 0.00 46.06 2.85
3000 3031 1.331756 GGCATTGTCAAGAGCATACGG 59.668 52.381 13.01 0.00 0.00 4.02
3153 3196 3.256383 TCCAATTGCCAACATGACTCAAG 59.744 43.478 0.00 0.00 0.00 3.02
3154 3197 3.229293 TCCAATTGCCAACATGACTCAA 58.771 40.909 0.00 0.00 0.00 3.02
3155 3198 2.874014 TCCAATTGCCAACATGACTCA 58.126 42.857 0.00 0.00 0.00 3.41
3156 3199 3.940209 TTCCAATTGCCAACATGACTC 57.060 42.857 0.00 0.00 0.00 3.36
3215 3258 5.213891 ACATGCCCTTTTAAAAGAGGTTG 57.786 39.130 26.11 23.35 38.28 3.77
3224 3267 4.679373 TGCTGAAAACATGCCCTTTTAA 57.321 36.364 0.00 0.00 0.00 1.52
3228 3272 2.754946 CATGCTGAAAACATGCCCTT 57.245 45.000 0.00 0.00 38.58 3.95
3293 3337 5.245075 TGATCCGCCATGTAATAGTACATCA 59.755 40.000 12.70 4.86 46.01 3.07
3294 3338 5.720202 TGATCCGCCATGTAATAGTACATC 58.280 41.667 12.70 2.83 46.01 3.06
3297 3341 5.294356 TGTTGATCCGCCATGTAATAGTAC 58.706 41.667 0.00 0.00 0.00 2.73
3298 3342 5.538849 TGTTGATCCGCCATGTAATAGTA 57.461 39.130 0.00 0.00 0.00 1.82
3300 3344 5.240891 AGATGTTGATCCGCCATGTAATAG 58.759 41.667 0.00 0.00 0.00 1.73
3309 3363 3.615849 GATCAAAGATGTTGATCCGCC 57.384 47.619 15.19 0.00 45.46 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.