Multiple sequence alignment - TraesCS2D01G142600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G142600 chr2D 100.000 5025 0 0 1 5025 83936623 83931599 0.000000e+00 9280.0
1 TraesCS2D01G142600 chr2D 95.038 524 26 0 1 524 113920170 113920693 0.000000e+00 824.0
2 TraesCS2D01G142600 chr2A 93.530 3184 128 31 1894 5025 84943619 84940462 0.000000e+00 4667.0
3 TraesCS2D01G142600 chr2A 89.368 696 34 17 753 1413 84944845 84944155 0.000000e+00 839.0
4 TraesCS2D01G142600 chr2A 93.363 226 9 6 1589 1811 84943906 84943684 3.750000e-86 329.0
5 TraesCS2D01G142600 chr2A 92.857 42 1 2 641 681 2612202 2612162 5.430000e-05 60.2
6 TraesCS2D01G142600 chr2B 95.174 2528 77 20 2522 5025 136156656 136154150 0.000000e+00 3951.0
7 TraesCS2D01G142600 chr2B 83.664 1059 67 53 1449 2432 136157778 136156751 0.000000e+00 900.0
8 TraesCS2D01G142600 chr2B 94.261 575 20 3 835 1397 136158372 136157799 0.000000e+00 867.0
9 TraesCS2D01G142600 chr2B 94.095 525 31 0 1 525 95792467 95792991 0.000000e+00 798.0
10 TraesCS2D01G142600 chr1B 94.275 524 30 0 1 524 57805153 57805676 0.000000e+00 802.0
11 TraesCS2D01G142600 chr1B 77.372 137 27 4 3204 3338 1472246 1472380 1.500000e-10 78.7
12 TraesCS2D01G142600 chr1B 75.949 158 30 8 3185 3338 1424405 1424252 1.940000e-09 75.0
13 TraesCS2D01G142600 chr7D 94.242 521 29 1 1 520 4582361 4582881 0.000000e+00 795.0
14 TraesCS2D01G142600 chr7D 83.486 218 31 5 3178 3392 450245835 450245620 1.100000e-46 198.0
15 TraesCS2D01G142600 chr4A 93.905 525 32 0 1 525 661815353 661815877 0.000000e+00 793.0
16 TraesCS2D01G142600 chr4A 94.050 521 31 0 4 524 733340747 733340227 0.000000e+00 791.0
17 TraesCS2D01G142600 chr4A 95.000 40 2 0 639 678 646513408 646513447 4.200000e-06 63.9
18 TraesCS2D01G142600 chrUn 94.038 520 31 0 4 523 68801128 68800609 0.000000e+00 789.0
19 TraesCS2D01G142600 chr6B 93.714 525 33 0 1 525 151215322 151215846 0.000000e+00 787.0
20 TraesCS2D01G142600 chr6B 93.714 525 32 1 1 525 553061595 553062118 0.000000e+00 785.0
21 TraesCS2D01G142600 chr7A 78.972 428 78 11 3473 3891 546262198 546261774 1.070000e-71 281.0
22 TraesCS2D01G142600 chr7A 90.698 43 3 1 652 694 90542267 90542226 7.030000e-04 56.5
23 TraesCS2D01G142600 chr7B 84.404 218 29 5 3178 3392 468406435 468406220 5.100000e-50 209.0
24 TraesCS2D01G142600 chr7B 94.737 38 2 0 652 689 64167248 64167285 5.430000e-05 60.2
25 TraesCS2D01G142600 chr3A 77.160 162 32 5 3179 3338 426653749 426653907 6.930000e-14 89.8
26 TraesCS2D01G142600 chr1D 79.167 120 17 8 3222 3337 2119742 2119627 5.390000e-10 76.8
27 TraesCS2D01G142600 chr3D 75.309 162 35 5 3179 3338 307567876 307567718 6.980000e-09 73.1
28 TraesCS2D01G142600 chr3D 93.023 43 3 0 639 681 143246507 143246465 4.200000e-06 63.9
29 TraesCS2D01G142600 chr3D 92.683 41 3 0 641 681 467773648 467773688 5.430000e-05 60.2
30 TraesCS2D01G142600 chr1A 95.238 42 2 0 641 682 297259582 297259541 3.250000e-07 67.6
31 TraesCS2D01G142600 chr6A 91.304 46 4 0 692 737 190660345 190660300 4.200000e-06 63.9
32 TraesCS2D01G142600 chr6A 91.304 46 4 0 692 737 190687611 190687566 4.200000e-06 63.9
33 TraesCS2D01G142600 chr6A 91.304 46 4 0 692 737 190738268 190738223 4.200000e-06 63.9
34 TraesCS2D01G142600 chr5D 88.462 52 4 2 641 692 241831804 241831755 1.510000e-05 62.1
35 TraesCS2D01G142600 chr5D 92.683 41 3 0 693 733 498725684 498725724 5.430000e-05 60.2
36 TraesCS2D01G142600 chr4B 91.111 45 4 0 693 737 474386378 474386334 1.510000e-05 62.1
37 TraesCS2D01G142600 chr6D 92.308 39 3 0 638 676 104456945 104456907 7.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G142600 chr2D 83931599 83936623 5024 True 9280 9280 100.000 1 5025 1 chr2D.!!$R1 5024
1 TraesCS2D01G142600 chr2D 113920170 113920693 523 False 824 824 95.038 1 524 1 chr2D.!!$F1 523
2 TraesCS2D01G142600 chr2A 84940462 84944845 4383 True 1945 4667 92.087 753 5025 3 chr2A.!!$R2 4272
3 TraesCS2D01G142600 chr2B 136154150 136158372 4222 True 1906 3951 91.033 835 5025 3 chr2B.!!$R1 4190
4 TraesCS2D01G142600 chr2B 95792467 95792991 524 False 798 798 94.095 1 525 1 chr2B.!!$F1 524
5 TraesCS2D01G142600 chr1B 57805153 57805676 523 False 802 802 94.275 1 524 1 chr1B.!!$F2 523
6 TraesCS2D01G142600 chr7D 4582361 4582881 520 False 795 795 94.242 1 520 1 chr7D.!!$F1 519
7 TraesCS2D01G142600 chr4A 661815353 661815877 524 False 793 793 93.905 1 525 1 chr4A.!!$F2 524
8 TraesCS2D01G142600 chr4A 733340227 733340747 520 True 791 791 94.050 4 524 1 chr4A.!!$R1 520
9 TraesCS2D01G142600 chrUn 68800609 68801128 519 True 789 789 94.038 4 523 1 chrUn.!!$R1 519
10 TraesCS2D01G142600 chr6B 151215322 151215846 524 False 787 787 93.714 1 525 1 chr6B.!!$F1 524
11 TraesCS2D01G142600 chr6B 553061595 553062118 523 False 785 785 93.714 1 525 1 chr6B.!!$F2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 0.036294 AGGCACGAACCCTAGCTTTC 60.036 55.0 0.00 0.0 0.00 2.62 F
1430 1469 0.109458 CACGACACTAGCTTACGCCA 60.109 55.0 0.00 0.0 36.60 5.69 F
1551 1650 0.027586 GCTTTGTCGCCGCGATTAAT 59.972 50.0 20.03 0.0 38.42 1.40 F
2121 2302 0.028505 GTTGATGCTGCCTGCGTATG 59.971 55.0 0.00 0.0 46.63 2.39 F
2281 2470 0.321298 ACGGCTGTGGTGGTGATTAC 60.321 55.0 0.00 0.0 0.00 1.89 F
2432 2621 0.657840 CCAAATCCAGATCGAACGGC 59.342 55.0 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1631 0.027586 ATTAATCGCGGCGACAAAGC 59.972 50.000 28.88 0.0 39.18 3.51 R
3149 3387 0.108207 CTCATCAGGTCCCTCATGCC 59.892 60.000 0.00 0.0 0.00 4.40 R
3150 3388 0.534652 GCTCATCAGGTCCCTCATGC 60.535 60.000 0.00 0.0 0.00 4.06 R
3151 3389 1.129917 AGCTCATCAGGTCCCTCATG 58.870 55.000 0.00 0.0 0.00 3.07 R
3922 4161 1.134098 ACATCGACATTGGGGATGGAC 60.134 52.381 17.85 0.0 41.37 4.02 R
4283 4530 1.269517 TGGTTCAAACAAATCTGCCGC 60.270 47.619 0.00 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.700042 GCCGTCATCATCCCTCCCTT 61.700 60.000 0.00 0.00 0.00 3.95
181 182 5.989168 TGAAGACACACGAACATAGACAAAT 59.011 36.000 0.00 0.00 0.00 2.32
262 263 0.806102 CCACCAACGATGCTAGACGG 60.806 60.000 0.00 0.00 0.00 4.79
333 334 3.479269 GCCGTCGCCTTGTCTTCG 61.479 66.667 0.00 0.00 0.00 3.79
493 494 0.036294 AGGCACGAACCCTAGCTTTC 60.036 55.000 0.00 0.00 0.00 2.62
525 526 2.047274 CGGCGGCTGAAAAGAGGA 60.047 61.111 7.61 0.00 0.00 3.71
526 527 2.103042 CGGCGGCTGAAAAGAGGAG 61.103 63.158 7.61 0.00 0.00 3.69
527 528 2.402572 GGCGGCTGAAAAGAGGAGC 61.403 63.158 0.00 0.00 0.00 4.70
528 529 1.672356 GCGGCTGAAAAGAGGAGCA 60.672 57.895 0.00 0.00 34.20 4.26
529 530 1.916697 GCGGCTGAAAAGAGGAGCAC 61.917 60.000 0.00 0.00 34.20 4.40
530 531 0.603707 CGGCTGAAAAGAGGAGCACA 60.604 55.000 0.00 0.00 34.20 4.57
531 532 1.831580 GGCTGAAAAGAGGAGCACAT 58.168 50.000 0.00 0.00 34.20 3.21
532 533 1.742268 GGCTGAAAAGAGGAGCACATC 59.258 52.381 0.00 0.00 34.20 3.06
533 534 2.617532 GGCTGAAAAGAGGAGCACATCT 60.618 50.000 0.00 0.00 38.88 2.90
534 535 3.080319 GCTGAAAAGAGGAGCACATCTT 58.920 45.455 5.18 5.18 46.80 2.40
539 540 3.347077 AAGAGGAGCACATCTTTGGAG 57.653 47.619 5.18 0.00 43.20 3.86
540 541 2.264455 AGAGGAGCACATCTTTGGAGT 58.736 47.619 0.00 0.00 33.14 3.85
541 542 2.641815 AGAGGAGCACATCTTTGGAGTT 59.358 45.455 0.00 0.00 33.14 3.01
542 543 2.746362 GAGGAGCACATCTTTGGAGTTG 59.254 50.000 0.00 0.00 0.00 3.16
543 544 2.373169 AGGAGCACATCTTTGGAGTTGA 59.627 45.455 0.00 0.00 0.00 3.18
544 545 3.009916 AGGAGCACATCTTTGGAGTTGAT 59.990 43.478 0.00 0.00 0.00 2.57
545 546 3.128242 GGAGCACATCTTTGGAGTTGATG 59.872 47.826 0.00 0.00 42.14 3.07
546 547 4.005650 GAGCACATCTTTGGAGTTGATGA 58.994 43.478 8.86 0.00 39.72 2.92
547 548 4.597004 AGCACATCTTTGGAGTTGATGAT 58.403 39.130 8.86 0.00 39.72 2.45
548 549 4.398358 AGCACATCTTTGGAGTTGATGATG 59.602 41.667 8.86 0.00 39.72 3.07
549 550 4.397103 GCACATCTTTGGAGTTGATGATGA 59.603 41.667 8.86 0.00 39.72 2.92
550 551 5.675575 GCACATCTTTGGAGTTGATGATGAC 60.676 44.000 8.86 0.00 39.72 3.06
551 552 4.633126 ACATCTTTGGAGTTGATGATGACG 59.367 41.667 8.86 0.00 39.72 4.35
552 553 4.535526 TCTTTGGAGTTGATGATGACGA 57.464 40.909 0.00 0.00 0.00 4.20
553 554 4.498241 TCTTTGGAGTTGATGATGACGAG 58.502 43.478 0.00 0.00 0.00 4.18
554 555 3.961480 TTGGAGTTGATGATGACGAGT 57.039 42.857 0.00 0.00 0.00 4.18
555 556 3.236632 TGGAGTTGATGATGACGAGTG 57.763 47.619 0.00 0.00 0.00 3.51
556 557 2.562738 TGGAGTTGATGATGACGAGTGT 59.437 45.455 0.00 0.00 0.00 3.55
557 558 2.926200 GGAGTTGATGATGACGAGTGTG 59.074 50.000 0.00 0.00 0.00 3.82
558 559 2.926200 GAGTTGATGATGACGAGTGTGG 59.074 50.000 0.00 0.00 0.00 4.17
559 560 2.562738 AGTTGATGATGACGAGTGTGGA 59.437 45.455 0.00 0.00 0.00 4.02
560 561 3.006859 AGTTGATGATGACGAGTGTGGAA 59.993 43.478 0.00 0.00 0.00 3.53
561 562 3.893326 TGATGATGACGAGTGTGGAAT 57.107 42.857 0.00 0.00 0.00 3.01
562 563 3.785486 TGATGATGACGAGTGTGGAATC 58.215 45.455 0.00 0.00 0.00 2.52
563 564 3.448660 TGATGATGACGAGTGTGGAATCT 59.551 43.478 0.00 0.00 0.00 2.40
564 565 3.961480 TGATGACGAGTGTGGAATCTT 57.039 42.857 0.00 0.00 0.00 2.40
565 566 4.271696 TGATGACGAGTGTGGAATCTTT 57.728 40.909 0.00 0.00 0.00 2.52
566 567 3.996363 TGATGACGAGTGTGGAATCTTTG 59.004 43.478 0.00 0.00 0.00 2.77
567 568 3.469008 TGACGAGTGTGGAATCTTTGT 57.531 42.857 0.00 0.00 0.00 2.83
568 569 4.594123 TGACGAGTGTGGAATCTTTGTA 57.406 40.909 0.00 0.00 0.00 2.41
569 570 4.951254 TGACGAGTGTGGAATCTTTGTAA 58.049 39.130 0.00 0.00 0.00 2.41
570 571 5.547465 TGACGAGTGTGGAATCTTTGTAAT 58.453 37.500 0.00 0.00 0.00 1.89
571 572 6.693466 TGACGAGTGTGGAATCTTTGTAATA 58.307 36.000 0.00 0.00 0.00 0.98
572 573 7.327975 TGACGAGTGTGGAATCTTTGTAATAT 58.672 34.615 0.00 0.00 0.00 1.28
573 574 7.277760 TGACGAGTGTGGAATCTTTGTAATATG 59.722 37.037 0.00 0.00 0.00 1.78
574 575 7.327975 ACGAGTGTGGAATCTTTGTAATATGA 58.672 34.615 0.00 0.00 0.00 2.15
575 576 7.987458 ACGAGTGTGGAATCTTTGTAATATGAT 59.013 33.333 0.00 0.00 0.00 2.45
576 577 8.278408 CGAGTGTGGAATCTTTGTAATATGATG 58.722 37.037 0.00 0.00 0.00 3.07
577 578 9.330063 GAGTGTGGAATCTTTGTAATATGATGA 57.670 33.333 0.00 0.00 0.00 2.92
578 579 9.334947 AGTGTGGAATCTTTGTAATATGATGAG 57.665 33.333 0.00 0.00 0.00 2.90
579 580 8.562892 GTGTGGAATCTTTGTAATATGATGAGG 58.437 37.037 0.00 0.00 0.00 3.86
580 581 7.720957 TGTGGAATCTTTGTAATATGATGAGGG 59.279 37.037 0.00 0.00 0.00 4.30
581 582 7.939039 GTGGAATCTTTGTAATATGATGAGGGA 59.061 37.037 0.00 0.00 0.00 4.20
582 583 8.672329 TGGAATCTTTGTAATATGATGAGGGAT 58.328 33.333 0.00 0.00 0.00 3.85
583 584 9.525826 GGAATCTTTGTAATATGATGAGGGATT 57.474 33.333 0.00 0.00 0.00 3.01
590 591 9.448438 TTGTAATATGATGAGGGATTTATTCCG 57.552 33.333 0.00 0.00 46.52 4.30
591 592 8.046708 TGTAATATGATGAGGGATTTATTCCGG 58.953 37.037 0.00 0.00 46.52 5.14
592 593 6.642733 ATATGATGAGGGATTTATTCCGGT 57.357 37.500 0.00 0.00 46.52 5.28
593 594 4.351874 TGATGAGGGATTTATTCCGGTC 57.648 45.455 0.00 0.00 46.52 4.79
594 595 3.072476 TGATGAGGGATTTATTCCGGTCC 59.928 47.826 0.00 0.00 46.52 4.46
595 596 2.771688 TGAGGGATTTATTCCGGTCCT 58.228 47.619 0.00 0.00 46.52 3.85
596 597 2.704065 TGAGGGATTTATTCCGGTCCTC 59.296 50.000 0.00 7.06 46.52 3.71
597 598 2.038689 GAGGGATTTATTCCGGTCCTCC 59.961 54.545 0.00 0.52 46.52 4.30
609 610 2.754946 GGTCCTCCGTCAATTACACA 57.245 50.000 0.00 0.00 0.00 3.72
610 611 3.261981 GGTCCTCCGTCAATTACACAT 57.738 47.619 0.00 0.00 0.00 3.21
611 612 2.936498 GGTCCTCCGTCAATTACACATG 59.064 50.000 0.00 0.00 0.00 3.21
612 613 3.369052 GGTCCTCCGTCAATTACACATGA 60.369 47.826 0.00 0.00 0.00 3.07
613 614 4.442706 GTCCTCCGTCAATTACACATGAT 58.557 43.478 0.00 0.00 0.00 2.45
614 615 5.452776 GGTCCTCCGTCAATTACACATGATA 60.453 44.000 0.00 0.00 0.00 2.15
615 616 5.462398 GTCCTCCGTCAATTACACATGATAC 59.538 44.000 0.00 0.00 0.00 2.24
616 617 5.362717 TCCTCCGTCAATTACACATGATACT 59.637 40.000 0.00 0.00 0.00 2.12
617 618 6.548251 TCCTCCGTCAATTACACATGATACTA 59.452 38.462 0.00 0.00 0.00 1.82
618 619 6.641314 CCTCCGTCAATTACACATGATACTAC 59.359 42.308 0.00 0.00 0.00 2.73
619 620 7.102847 TCCGTCAATTACACATGATACTACA 57.897 36.000 0.00 0.00 0.00 2.74
620 621 7.722363 TCCGTCAATTACACATGATACTACAT 58.278 34.615 0.00 0.00 0.00 2.29
621 622 8.201464 TCCGTCAATTACACATGATACTACATT 58.799 33.333 0.00 0.00 0.00 2.71
622 623 8.487970 CCGTCAATTACACATGATACTACATTC 58.512 37.037 0.00 0.00 0.00 2.67
623 624 8.207906 CGTCAATTACACATGATACTACATTCG 58.792 37.037 0.00 0.00 0.00 3.34
624 625 8.004344 GTCAATTACACATGATACTACATTCGC 58.996 37.037 0.00 0.00 0.00 4.70
625 626 7.708752 TCAATTACACATGATACTACATTCGCA 59.291 33.333 0.00 0.00 0.00 5.10
626 627 7.643528 ATTACACATGATACTACATTCGCAG 57.356 36.000 0.00 0.00 0.00 5.18
627 628 5.262588 ACACATGATACTACATTCGCAGA 57.737 39.130 0.00 0.00 0.00 4.26
628 629 5.660460 ACACATGATACTACATTCGCAGAA 58.340 37.500 0.00 0.00 45.90 3.02
629 630 6.283694 ACACATGATACTACATTCGCAGAAT 58.716 36.000 0.00 0.00 45.90 2.40
630 631 7.433680 ACACATGATACTACATTCGCAGAATA 58.566 34.615 0.00 0.00 45.90 1.75
631 632 7.926018 ACACATGATACTACATTCGCAGAATAA 59.074 33.333 0.00 0.00 45.90 1.40
632 633 8.764287 CACATGATACTACATTCGCAGAATAAA 58.236 33.333 0.00 0.00 45.90 1.40
633 634 9.325198 ACATGATACTACATTCGCAGAATAAAA 57.675 29.630 0.00 0.00 45.90 1.52
647 648 9.444600 TCGCAGAATAAAAATAAAGTACTTCCT 57.555 29.630 8.95 0.00 0.00 3.36
725 726 9.941664 TTGAACGTTTTTATATTTGTTTACGGA 57.058 25.926 0.46 0.00 32.54 4.69
726 727 9.596677 TGAACGTTTTTATATTTGTTTACGGAG 57.403 29.630 0.46 0.00 32.54 4.63
727 728 8.953507 AACGTTTTTATATTTGTTTACGGAGG 57.046 30.769 0.00 0.00 32.54 4.30
728 729 7.529158 ACGTTTTTATATTTGTTTACGGAGGG 58.471 34.615 0.00 0.00 32.54 4.30
729 730 7.390162 ACGTTTTTATATTTGTTTACGGAGGGA 59.610 33.333 0.00 0.00 32.54 4.20
730 731 7.906527 CGTTTTTATATTTGTTTACGGAGGGAG 59.093 37.037 0.00 0.00 0.00 4.30
731 732 8.733458 GTTTTTATATTTGTTTACGGAGGGAGT 58.267 33.333 0.00 0.00 0.00 3.85
732 733 9.956640 TTTTTATATTTGTTTACGGAGGGAGTA 57.043 29.630 0.00 0.00 0.00 2.59
733 734 9.956640 TTTTATATTTGTTTACGGAGGGAGTAA 57.043 29.630 0.00 0.00 32.84 2.24
734 735 8.947055 TTATATTTGTTTACGGAGGGAGTAAC 57.053 34.615 0.00 0.00 34.25 2.50
735 736 4.961438 TTTGTTTACGGAGGGAGTAACT 57.039 40.909 0.00 0.00 34.25 2.24
736 737 4.525912 TTGTTTACGGAGGGAGTAACTC 57.474 45.455 0.00 0.00 34.25 3.01
737 738 3.499338 TGTTTACGGAGGGAGTAACTCA 58.501 45.455 0.00 0.00 36.70 3.41
738 739 3.256631 TGTTTACGGAGGGAGTAACTCAC 59.743 47.826 0.00 0.00 36.70 3.51
739 740 2.885135 TACGGAGGGAGTAACTCACA 57.115 50.000 0.00 0.00 36.16 3.58
740 741 2.233305 ACGGAGGGAGTAACTCACAT 57.767 50.000 0.00 0.00 36.16 3.21
741 742 1.825474 ACGGAGGGAGTAACTCACATG 59.175 52.381 0.00 0.00 36.16 3.21
742 743 1.137086 CGGAGGGAGTAACTCACATGG 59.863 57.143 0.00 0.00 36.16 3.66
743 744 2.188817 GGAGGGAGTAACTCACATGGT 58.811 52.381 0.00 0.00 36.16 3.55
744 745 3.371965 GGAGGGAGTAACTCACATGGTA 58.628 50.000 0.00 0.00 36.16 3.25
745 746 3.132467 GGAGGGAGTAACTCACATGGTAC 59.868 52.174 0.00 0.00 36.16 3.34
746 747 3.105283 AGGGAGTAACTCACATGGTACC 58.895 50.000 4.43 4.43 36.16 3.34
747 748 2.835764 GGGAGTAACTCACATGGTACCA 59.164 50.000 18.99 18.99 33.47 3.25
748 749 3.369157 GGGAGTAACTCACATGGTACCAC 60.369 52.174 19.09 0.35 33.47 4.16
749 750 3.514309 GGAGTAACTCACATGGTACCACT 59.486 47.826 19.09 6.13 31.08 4.00
750 751 4.020485 GGAGTAACTCACATGGTACCACTT 60.020 45.833 19.09 3.62 31.08 3.16
751 752 4.894784 AGTAACTCACATGGTACCACTTG 58.105 43.478 19.09 17.02 0.00 3.16
759 760 3.704061 ACATGGTACCACTTGCAAAAACT 59.296 39.130 19.09 0.00 0.00 2.66
769 770 2.623878 TGCAAAAACTACCGGAGTGA 57.376 45.000 9.46 0.00 38.87 3.41
770 771 2.489971 TGCAAAAACTACCGGAGTGAG 58.510 47.619 9.46 1.72 38.87 3.51
771 772 2.158871 TGCAAAAACTACCGGAGTGAGT 60.159 45.455 9.46 2.46 38.87 3.41
773 774 2.165319 AAAACTACCGGAGTGAGTGC 57.835 50.000 9.46 0.00 38.87 4.40
776 777 1.251527 ACTACCGGAGTGAGTGCTGG 61.252 60.000 9.46 0.00 36.87 4.85
777 778 0.965866 CTACCGGAGTGAGTGCTGGA 60.966 60.000 9.46 0.00 34.57 3.86
778 779 0.324368 TACCGGAGTGAGTGCTGGAT 60.324 55.000 9.46 0.00 34.57 3.41
779 780 1.194781 ACCGGAGTGAGTGCTGGATT 61.195 55.000 9.46 0.00 34.57 3.01
783 784 1.834263 GGAGTGAGTGCTGGATTAGGT 59.166 52.381 0.00 0.00 0.00 3.08
784 785 3.031736 GGAGTGAGTGCTGGATTAGGTA 58.968 50.000 0.00 0.00 0.00 3.08
786 787 3.954904 GAGTGAGTGCTGGATTAGGTAGA 59.045 47.826 0.00 0.00 0.00 2.59
790 791 4.716784 TGAGTGCTGGATTAGGTAGACATT 59.283 41.667 0.00 0.00 0.00 2.71
797 798 3.069729 GGATTAGGTAGACATTGACCGCT 59.930 47.826 0.00 0.00 40.91 5.52
807 808 3.417101 ACATTGACCGCTGTTAATCCAA 58.583 40.909 0.00 0.00 28.97 3.53
813 814 1.161843 CGCTGTTAATCCAAACCCGT 58.838 50.000 0.00 0.00 0.00 5.28
819 820 5.450592 TGTTAATCCAAACCCGTTTAACC 57.549 39.130 0.00 0.00 33.77 2.85
820 821 4.280425 TGTTAATCCAAACCCGTTTAACCC 59.720 41.667 0.00 0.00 33.77 4.11
821 822 1.927487 ATCCAAACCCGTTTAACCCC 58.073 50.000 0.00 0.00 0.00 4.95
822 823 0.178967 TCCAAACCCGTTTAACCCCC 60.179 55.000 0.00 0.00 0.00 5.40
823 824 1.525718 CCAAACCCGTTTAACCCCCG 61.526 60.000 0.00 0.00 0.00 5.73
824 825 0.822944 CAAACCCGTTTAACCCCCGT 60.823 55.000 0.00 0.00 0.00 5.28
826 827 2.434709 CCCGTTTAACCCCCGTCG 60.435 66.667 0.00 0.00 0.00 5.12
827 828 2.656055 CCGTTTAACCCCCGTCGA 59.344 61.111 0.00 0.00 0.00 4.20
828 829 1.005156 CCGTTTAACCCCCGTCGAA 60.005 57.895 0.00 0.00 0.00 3.71
829 830 1.291184 CCGTTTAACCCCCGTCGAAC 61.291 60.000 0.00 0.00 0.00 3.95
830 831 1.291184 CGTTTAACCCCCGTCGAACC 61.291 60.000 0.00 0.00 0.00 3.62
831 832 0.250252 GTTTAACCCCCGTCGAACCA 60.250 55.000 0.00 0.00 0.00 3.67
832 833 0.250252 TTTAACCCCCGTCGAACCAC 60.250 55.000 0.00 0.00 0.00 4.16
833 834 1.406065 TTAACCCCCGTCGAACCACA 61.406 55.000 0.00 0.00 0.00 4.17
834 835 2.098426 TAACCCCCGTCGAACCACAC 62.098 60.000 0.00 0.00 0.00 3.82
835 836 3.931247 CCCCCGTCGAACCACACA 61.931 66.667 0.00 0.00 0.00 3.72
869 880 3.495670 TTGCAACTAAACAAAGCACGT 57.504 38.095 0.00 0.00 34.56 4.49
878 889 8.889000 CAACTAAACAAAGCACGTCTTAATAAC 58.111 33.333 0.00 0.00 33.88 1.89
1076 1095 3.826754 CGGGCTCGCAGCTAGTCA 61.827 66.667 0.00 0.00 41.99 3.41
1077 1096 2.105930 GGGCTCGCAGCTAGTCAG 59.894 66.667 0.35 0.00 41.99 3.51
1114 1148 3.179265 CGTCGTCATGGTCGTGGC 61.179 66.667 10.02 0.00 0.00 5.01
1398 1437 0.822164 GGAAGCTCTACGGTAAGCCA 59.178 55.000 14.48 0.00 39.39 4.75
1403 1442 3.768878 AGCTCTACGGTAAGCCATATCT 58.231 45.455 14.48 0.00 39.39 1.98
1404 1443 3.759618 AGCTCTACGGTAAGCCATATCTC 59.240 47.826 14.48 0.00 39.39 2.75
1411 1450 3.181495 CGGTAAGCCATATCTCTCGATCC 60.181 52.174 0.00 0.00 34.09 3.36
1414 1453 1.815613 AGCCATATCTCTCGATCCACG 59.184 52.381 0.00 0.00 44.09 4.94
1420 1459 2.685850 TCTCTCGATCCACGACACTA 57.314 50.000 0.00 0.00 46.45 2.74
1424 1463 1.402259 CTCGATCCACGACACTAGCTT 59.598 52.381 0.00 0.00 46.45 3.74
1425 1464 2.612672 CTCGATCCACGACACTAGCTTA 59.387 50.000 0.00 0.00 46.45 3.09
1426 1465 2.353889 TCGATCCACGACACTAGCTTAC 59.646 50.000 0.00 0.00 46.45 2.34
1427 1466 2.717530 GATCCACGACACTAGCTTACG 58.282 52.381 0.00 0.00 0.00 3.18
1428 1467 0.169672 TCCACGACACTAGCTTACGC 59.830 55.000 0.00 0.00 0.00 4.42
1429 1468 0.801067 CCACGACACTAGCTTACGCC 60.801 60.000 0.00 0.00 36.60 5.68
1430 1469 0.109458 CACGACACTAGCTTACGCCA 60.109 55.000 0.00 0.00 36.60 5.69
1431 1470 0.599558 ACGACACTAGCTTACGCCAA 59.400 50.000 0.00 0.00 36.60 4.52
1434 1473 2.159476 CGACACTAGCTTACGCCAACTA 60.159 50.000 0.00 0.00 36.60 2.24
1435 1474 3.436496 GACACTAGCTTACGCCAACTAG 58.564 50.000 0.00 0.00 38.44 2.57
1438 1477 3.066342 CACTAGCTTACGCCAACTAGCTA 59.934 47.826 0.00 0.00 43.31 3.32
1440 1479 1.202428 AGCTTACGCCAACTAGCTAGC 60.202 52.381 20.91 6.62 41.87 3.42
1443 1492 3.305471 GCTTACGCCAACTAGCTAGCTAT 60.305 47.826 24.36 8.50 0.00 2.97
1445 1494 2.588620 ACGCCAACTAGCTAGCTATCT 58.411 47.619 24.36 11.88 0.00 1.98
1495 1574 7.727331 TCCAATTTTGCTTTCGATCAATTTT 57.273 28.000 0.00 0.00 0.00 1.82
1497 1576 7.017055 CCAATTTTGCTTTCGATCAATTTTCC 58.983 34.615 0.00 0.00 0.00 3.13
1498 1577 5.820926 TTTTGCTTTCGATCAATTTTCCG 57.179 34.783 0.00 0.00 0.00 4.30
1499 1578 4.497473 TTGCTTTCGATCAATTTTCCGT 57.503 36.364 0.00 0.00 0.00 4.69
1500 1579 4.497473 TGCTTTCGATCAATTTTCCGTT 57.503 36.364 0.00 0.00 0.00 4.44
1501 1580 4.225984 TGCTTTCGATCAATTTTCCGTTG 58.774 39.130 0.00 0.00 0.00 4.10
1502 1581 4.226761 GCTTTCGATCAATTTTCCGTTGT 58.773 39.130 0.00 0.00 0.00 3.32
1504 1583 4.822036 TTCGATCAATTTTCCGTTGTGT 57.178 36.364 0.00 0.00 0.00 3.72
1505 1584 4.822036 TCGATCAATTTTCCGTTGTGTT 57.178 36.364 0.00 0.00 0.00 3.32
1506 1585 4.778904 TCGATCAATTTTCCGTTGTGTTC 58.221 39.130 0.00 0.00 0.00 3.18
1528 1627 3.257745 TCATGCATCGATCGAATTTGC 57.742 42.857 27.19 27.19 0.00 3.68
1531 1630 3.323729 TGCATCGATCGAATTTGCTTC 57.676 42.857 31.07 12.66 34.47 3.86
1543 1642 2.709629 TTTGCTTCGCTTTGTCGCCG 62.710 55.000 0.00 0.00 0.00 6.46
1549 1648 3.086309 GCTTTGTCGCCGCGATTA 58.914 55.556 20.03 8.67 38.42 1.75
1550 1649 1.422269 GCTTTGTCGCCGCGATTAA 59.578 52.632 20.03 14.30 38.42 1.40
1551 1650 0.027586 GCTTTGTCGCCGCGATTAAT 59.972 50.000 20.03 0.00 38.42 1.40
1553 1652 2.363220 CTTTGTCGCCGCGATTAATTC 58.637 47.619 20.03 5.27 38.42 2.17
1727 1849 0.542702 AAAACCATGGTGCCTCCCTG 60.543 55.000 20.60 0.00 34.77 4.45
1839 1982 9.076596 GCTTCATTCGCTTTTGTAAATCTTAAT 57.923 29.630 0.00 0.00 0.00 1.40
1936 2112 0.804989 CTCCATCGCAAGTCAAACCC 59.195 55.000 0.00 0.00 39.48 4.11
1958 2134 1.600957 GTGAGATGTTGGCCATGATCG 59.399 52.381 6.09 0.00 32.56 3.69
2113 2294 2.032634 TCGTTCGGTTGATGCTGCC 61.033 57.895 0.00 0.00 0.00 4.85
2115 2296 1.503542 GTTCGGTTGATGCTGCCTG 59.496 57.895 0.00 0.00 0.00 4.85
2116 2297 2.334946 TTCGGTTGATGCTGCCTGC 61.335 57.895 0.00 0.00 43.25 4.85
2118 2299 3.058160 GGTTGATGCTGCCTGCGT 61.058 61.111 0.00 0.00 46.63 5.24
2119 2300 1.745115 GGTTGATGCTGCCTGCGTA 60.745 57.895 0.00 0.00 46.63 4.42
2120 2301 1.097547 GGTTGATGCTGCCTGCGTAT 61.098 55.000 0.00 0.00 46.63 3.06
2121 2302 0.028505 GTTGATGCTGCCTGCGTATG 59.971 55.000 0.00 0.00 46.63 2.39
2191 2377 2.308866 AGGATCCAAGTTTGATTCCGGT 59.691 45.455 15.82 0.00 35.50 5.28
2193 2379 4.166144 AGGATCCAAGTTTGATTCCGGTAT 59.834 41.667 15.82 0.00 35.50 2.73
2208 2394 5.353394 TCCGGTATTTTGCTCTCATTAGT 57.647 39.130 0.00 0.00 0.00 2.24
2211 2397 7.332557 TCCGGTATTTTGCTCTCATTAGTTTA 58.667 34.615 0.00 0.00 0.00 2.01
2223 2411 5.640357 TCTCATTAGTTTAAAATCGTGCGGT 59.360 36.000 0.00 0.00 0.00 5.68
2281 2470 0.321298 ACGGCTGTGGTGGTGATTAC 60.321 55.000 0.00 0.00 0.00 1.89
2288 2477 3.670625 TGTGGTGGTGATTACTTAGTGC 58.329 45.455 0.00 0.00 0.00 4.40
2303 2492 6.323203 ACTTAGTGCAGTTAGTTAGTTCGA 57.677 37.500 7.38 0.00 0.00 3.71
2323 2512 2.880890 GAGTGTGGAATCTTGTTGCTGT 59.119 45.455 0.00 0.00 0.00 4.40
2324 2513 2.620115 AGTGTGGAATCTTGTTGCTGTG 59.380 45.455 0.00 0.00 0.00 3.66
2325 2514 1.955778 TGTGGAATCTTGTTGCTGTGG 59.044 47.619 0.00 0.00 0.00 4.17
2326 2515 2.229792 GTGGAATCTTGTTGCTGTGGA 58.770 47.619 0.00 0.00 0.00 4.02
2350 2539 1.411612 TCATGAGCAGATCACGAGCAT 59.588 47.619 0.00 0.00 41.91 3.79
2432 2621 0.657840 CCAAATCCAGATCGAACGGC 59.342 55.000 0.00 0.00 0.00 5.68
2444 2633 1.791103 CGAACGGCCAGGAAAAAGCA 61.791 55.000 2.24 0.00 0.00 3.91
2478 2667 5.344933 TCGTGTGAACTTAATTCTGACGATG 59.655 40.000 0.00 0.00 42.08 3.84
2498 2693 1.536284 GGATTGACCCGAGCTAGTTCG 60.536 57.143 20.70 20.70 40.18 3.95
2527 2735 1.448985 TTTGTGTCGGCCAGCTAATC 58.551 50.000 2.24 0.00 0.00 1.75
2530 2738 1.153369 TGTCGGCCAGCTAATCTGC 60.153 57.895 2.24 0.00 41.50 4.26
2532 2740 2.202932 CGGCCAGCTAATCTGCGT 60.203 61.111 2.24 0.00 41.50 5.24
2773 2981 1.371183 CACCGAGAACCTCAAGCCA 59.629 57.895 0.00 0.00 0.00 4.75
3079 3311 1.414866 GGGAGATCAGGAAGGGCCTC 61.415 65.000 6.46 0.00 46.97 4.70
3115 3347 2.124570 CTGCCCAAGGATGGTCGG 60.125 66.667 0.00 0.00 46.01 4.79
3117 3349 3.407967 GCCCAAGGATGGTCGGGA 61.408 66.667 0.00 0.00 46.01 5.14
3235 3473 0.670854 AGAACTTCTTCTTCGCCGGC 60.671 55.000 19.07 19.07 32.29 6.13
3399 3637 2.874780 CGTACGCACCGTGCTCTC 60.875 66.667 20.87 9.64 42.25 3.20
3400 3638 2.567049 GTACGCACCGTGCTCTCT 59.433 61.111 20.87 3.88 42.25 3.10
3401 3639 1.801913 GTACGCACCGTGCTCTCTG 60.802 63.158 20.87 7.78 42.25 3.35
3404 3642 2.340078 GCACCGTGCTCTCTGTCA 59.660 61.111 16.51 0.00 40.96 3.58
3466 3704 3.837213 ATTAATGGCGATGTGCTATGC 57.163 42.857 0.00 0.00 45.06 3.14
3938 4177 1.523711 CCGTCCATCCCCAATGTCG 60.524 63.158 0.00 0.00 33.13 4.35
4068 4310 7.659390 AGATTACAAAGAGAAGCATATGTAGCC 59.341 37.037 4.29 0.00 0.00 3.93
4127 4371 8.515695 TGCTCAATCTTCATGAATTTCATACT 57.484 30.769 8.96 0.00 34.28 2.12
4128 4372 8.403236 TGCTCAATCTTCATGAATTTCATACTG 58.597 33.333 8.96 2.19 34.28 2.74
4131 4375 7.339976 TCAATCTTCATGAATTTCATACTGGCA 59.660 33.333 8.96 0.00 34.28 4.92
4133 4377 6.855836 TCTTCATGAATTTCATACTGGCAAC 58.144 36.000 8.96 0.00 34.28 4.17
4134 4378 6.433716 TCTTCATGAATTTCATACTGGCAACA 59.566 34.615 8.96 0.00 38.91 3.33
4201 4445 3.515330 AAATGCTAGGCTTCATGTTGC 57.485 42.857 0.00 0.00 0.00 4.17
4206 4450 3.451894 GGCTTCATGTTGCCCCCG 61.452 66.667 16.94 0.00 43.11 5.73
4211 4456 1.550072 CTTCATGTTGCCCCCGAATTT 59.450 47.619 0.00 0.00 0.00 1.82
4215 4460 2.516227 TGTTGCCCCCGAATTTATCA 57.484 45.000 0.00 0.00 0.00 2.15
4329 4577 3.362581 ATGCAGCAATGCTTCATGC 57.637 47.368 18.81 14.15 40.59 4.06
4337 4585 2.876091 CAATGCTTCATGCTCTTGTGG 58.124 47.619 0.00 0.00 43.37 4.17
4344 4592 2.349590 TCATGCTCTTGTGGAATGACG 58.650 47.619 0.00 0.00 0.00 4.35
4368 4616 8.818057 ACGAGCTGTTTCTGTAAATATGATAAC 58.182 33.333 0.00 0.00 0.00 1.89
4490 4759 5.827756 TCTTGAGGGTCTATACTGACAAGA 58.172 41.667 0.00 0.00 38.61 3.02
4572 4841 3.451178 TCACCTAGTAAGAGGAATGCACC 59.549 47.826 0.00 0.00 39.15 5.01
4638 4907 5.351740 GGAATCCTCCTGAAAACTAAAGTCG 59.648 44.000 0.00 0.00 38.88 4.18
4639 4908 5.740290 ATCCTCCTGAAAACTAAAGTCGA 57.260 39.130 0.00 0.00 0.00 4.20
4664 4936 4.996758 GCTTTTATGTTTGGTTGCTCCATT 59.003 37.500 2.36 0.00 46.60 3.16
4697 4969 3.192541 TGCTTAGTCAGAGCACACAAA 57.807 42.857 0.00 0.00 44.63 2.83
4701 4973 2.698855 AGTCAGAGCACACAAACTGT 57.301 45.000 0.00 0.00 0.00 3.55
4739 5011 5.360649 AAGCTGGAAGTAGAGAATTACCC 57.639 43.478 0.00 0.00 35.30 3.69
4927 5199 4.720046 TGACCAACCATAACTACTTGCAA 58.280 39.130 0.00 0.00 0.00 4.08
4934 5206 9.086336 CCAACCATAACTACTTGCAAAATTATG 57.914 33.333 16.95 16.95 32.34 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 0.684535 TTGCTCGGATCTGGTTGTGA 59.315 50.000 0.62 0.00 0.00 3.58
215 216 2.280592 GTGTGTCTCCGGCGGTTT 60.281 61.111 27.32 0.00 0.00 3.27
262 263 0.249955 TAATCCCCGTTTCGGTGGTC 59.750 55.000 7.40 0.00 46.80 4.02
279 280 2.185663 ATAAAGGTCTCCCCGCCTAA 57.814 50.000 0.00 0.00 38.74 2.69
320 321 1.199327 CTACTCACGAAGACAAGGCGA 59.801 52.381 0.00 0.00 0.00 5.54
323 324 2.557056 TGTCCTACTCACGAAGACAAGG 59.443 50.000 0.00 0.00 34.68 3.61
326 327 2.578786 TGTGTCCTACTCACGAAGACA 58.421 47.619 0.00 0.00 38.48 3.41
333 334 4.202284 TGTTAGGGTTTGTGTCCTACTCAC 60.202 45.833 0.00 0.00 35.56 3.51
427 428 3.352748 TCTCCGGTGGCCCTAGGA 61.353 66.667 11.48 5.02 0.00 2.94
493 494 2.586792 CCGCCTCCTCTTCCAAGG 59.413 66.667 0.00 0.00 37.81 3.61
517 518 4.077822 CTCCAAAGATGTGCTCCTCTTTT 58.922 43.478 14.03 1.36 39.15 2.27
525 526 4.025040 TCATCAACTCCAAAGATGTGCT 57.975 40.909 0.00 0.00 39.96 4.40
526 527 4.397103 TCATCATCAACTCCAAAGATGTGC 59.603 41.667 0.00 0.00 39.96 4.57
527 528 5.446875 CGTCATCATCAACTCCAAAGATGTG 60.447 44.000 0.00 0.00 39.96 3.21
528 529 4.633126 CGTCATCATCAACTCCAAAGATGT 59.367 41.667 0.00 0.00 39.96 3.06
529 530 4.872124 TCGTCATCATCAACTCCAAAGATG 59.128 41.667 0.00 0.00 40.29 2.90
530 531 5.089970 TCGTCATCATCAACTCCAAAGAT 57.910 39.130 0.00 0.00 0.00 2.40
531 532 4.021104 ACTCGTCATCATCAACTCCAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
532 533 4.092529 CACTCGTCATCATCAACTCCAAAG 59.907 45.833 0.00 0.00 0.00 2.77
533 534 3.996363 CACTCGTCATCATCAACTCCAAA 59.004 43.478 0.00 0.00 0.00 3.28
534 535 3.006859 ACACTCGTCATCATCAACTCCAA 59.993 43.478 0.00 0.00 0.00 3.53
535 536 2.562738 ACACTCGTCATCATCAACTCCA 59.437 45.455 0.00 0.00 0.00 3.86
536 537 2.926200 CACACTCGTCATCATCAACTCC 59.074 50.000 0.00 0.00 0.00 3.85
537 538 2.926200 CCACACTCGTCATCATCAACTC 59.074 50.000 0.00 0.00 0.00 3.01
538 539 2.562738 TCCACACTCGTCATCATCAACT 59.437 45.455 0.00 0.00 0.00 3.16
539 540 2.959516 TCCACACTCGTCATCATCAAC 58.040 47.619 0.00 0.00 0.00 3.18
540 541 3.676291 TTCCACACTCGTCATCATCAA 57.324 42.857 0.00 0.00 0.00 2.57
541 542 3.448660 AGATTCCACACTCGTCATCATCA 59.551 43.478 0.00 0.00 0.00 3.07
542 543 4.052159 AGATTCCACACTCGTCATCATC 57.948 45.455 0.00 0.00 0.00 2.92
543 544 4.478206 AAGATTCCACACTCGTCATCAT 57.522 40.909 0.00 0.00 0.00 2.45
544 545 3.961480 AAGATTCCACACTCGTCATCA 57.039 42.857 0.00 0.00 0.00 3.07
545 546 3.997021 ACAAAGATTCCACACTCGTCATC 59.003 43.478 0.00 0.00 0.00 2.92
546 547 4.008074 ACAAAGATTCCACACTCGTCAT 57.992 40.909 0.00 0.00 0.00 3.06
547 548 3.469008 ACAAAGATTCCACACTCGTCA 57.531 42.857 0.00 0.00 0.00 4.35
548 549 7.491372 TCATATTACAAAGATTCCACACTCGTC 59.509 37.037 0.00 0.00 0.00 4.20
549 550 7.327975 TCATATTACAAAGATTCCACACTCGT 58.672 34.615 0.00 0.00 0.00 4.18
550 551 7.770801 TCATATTACAAAGATTCCACACTCG 57.229 36.000 0.00 0.00 0.00 4.18
551 552 9.330063 TCATCATATTACAAAGATTCCACACTC 57.670 33.333 0.00 0.00 0.00 3.51
552 553 9.334947 CTCATCATATTACAAAGATTCCACACT 57.665 33.333 0.00 0.00 0.00 3.55
553 554 8.562892 CCTCATCATATTACAAAGATTCCACAC 58.437 37.037 0.00 0.00 0.00 3.82
554 555 7.720957 CCCTCATCATATTACAAAGATTCCACA 59.279 37.037 0.00 0.00 0.00 4.17
555 556 7.939039 TCCCTCATCATATTACAAAGATTCCAC 59.061 37.037 0.00 0.00 0.00 4.02
556 557 8.044574 TCCCTCATCATATTACAAAGATTCCA 57.955 34.615 0.00 0.00 0.00 3.53
557 558 9.525826 AATCCCTCATCATATTACAAAGATTCC 57.474 33.333 0.00 0.00 0.00 3.01
564 565 9.448438 CGGAATAAATCCCTCATCATATTACAA 57.552 33.333 0.00 0.00 46.39 2.41
565 566 8.046708 CCGGAATAAATCCCTCATCATATTACA 58.953 37.037 0.00 0.00 46.39 2.41
566 567 8.047310 ACCGGAATAAATCCCTCATCATATTAC 58.953 37.037 9.46 0.00 46.39 1.89
567 568 8.158025 ACCGGAATAAATCCCTCATCATATTA 57.842 34.615 9.46 0.00 46.39 0.98
568 569 7.032598 ACCGGAATAAATCCCTCATCATATT 57.967 36.000 9.46 0.00 46.39 1.28
569 570 6.353082 GGACCGGAATAAATCCCTCATCATAT 60.353 42.308 9.46 0.00 46.39 1.78
570 571 5.045869 GGACCGGAATAAATCCCTCATCATA 60.046 44.000 9.46 0.00 46.39 2.15
571 572 4.263506 GGACCGGAATAAATCCCTCATCAT 60.264 45.833 9.46 0.00 46.39 2.45
572 573 3.072476 GGACCGGAATAAATCCCTCATCA 59.928 47.826 9.46 0.00 46.39 3.07
573 574 3.328050 AGGACCGGAATAAATCCCTCATC 59.672 47.826 9.46 0.00 46.39 2.92
574 575 3.327439 AGGACCGGAATAAATCCCTCAT 58.673 45.455 9.46 0.00 46.39 2.90
575 576 2.704065 GAGGACCGGAATAAATCCCTCA 59.296 50.000 9.46 0.00 46.39 3.86
576 577 2.038689 GGAGGACCGGAATAAATCCCTC 59.961 54.545 9.46 9.96 46.39 4.30
577 578 2.055579 GGAGGACCGGAATAAATCCCT 58.944 52.381 9.46 0.59 46.39 4.20
578 579 2.563261 GGAGGACCGGAATAAATCCC 57.437 55.000 9.46 0.00 46.39 3.85
590 591 2.754946 TGTGTAATTGACGGAGGACC 57.245 50.000 0.00 0.00 0.00 4.46
591 592 3.857052 TCATGTGTAATTGACGGAGGAC 58.143 45.455 0.00 0.00 0.00 3.85
592 593 4.753516 ATCATGTGTAATTGACGGAGGA 57.246 40.909 0.00 0.00 0.00 3.71
593 594 5.601662 AGTATCATGTGTAATTGACGGAGG 58.398 41.667 0.00 0.00 0.00 4.30
594 595 7.200455 TGTAGTATCATGTGTAATTGACGGAG 58.800 38.462 0.00 0.00 0.00 4.63
595 596 7.102847 TGTAGTATCATGTGTAATTGACGGA 57.897 36.000 0.00 0.00 0.00 4.69
596 597 7.946655 ATGTAGTATCATGTGTAATTGACGG 57.053 36.000 0.00 0.00 0.00 4.79
597 598 8.207906 CGAATGTAGTATCATGTGTAATTGACG 58.792 37.037 0.00 0.00 0.00 4.35
598 599 8.004344 GCGAATGTAGTATCATGTGTAATTGAC 58.996 37.037 0.00 0.00 0.00 3.18
599 600 7.708752 TGCGAATGTAGTATCATGTGTAATTGA 59.291 33.333 0.00 0.00 0.00 2.57
600 601 7.850501 TGCGAATGTAGTATCATGTGTAATTG 58.149 34.615 0.00 0.00 0.00 2.32
601 602 7.926018 TCTGCGAATGTAGTATCATGTGTAATT 59.074 33.333 0.00 0.00 0.00 1.40
602 603 7.433680 TCTGCGAATGTAGTATCATGTGTAAT 58.566 34.615 0.00 0.00 0.00 1.89
603 604 6.801575 TCTGCGAATGTAGTATCATGTGTAA 58.198 36.000 0.00 0.00 0.00 2.41
604 605 6.385649 TCTGCGAATGTAGTATCATGTGTA 57.614 37.500 0.00 0.00 0.00 2.90
605 606 5.262588 TCTGCGAATGTAGTATCATGTGT 57.737 39.130 0.00 0.00 0.00 3.72
606 607 6.775939 ATTCTGCGAATGTAGTATCATGTG 57.224 37.500 3.51 0.00 0.00 3.21
607 608 8.887036 TTTATTCTGCGAATGTAGTATCATGT 57.113 30.769 12.17 0.00 0.00 3.21
621 622 9.444600 AGGAAGTACTTTATTTTTATTCTGCGA 57.555 29.630 10.02 0.00 0.00 5.10
699 700 9.941664 TCCGTAAACAAATATAAAAACGTTCAA 57.058 25.926 0.00 0.00 0.00 2.69
700 701 9.596677 CTCCGTAAACAAATATAAAAACGTTCA 57.403 29.630 0.00 0.00 0.00 3.18
701 702 9.054191 CCTCCGTAAACAAATATAAAAACGTTC 57.946 33.333 0.00 0.00 0.00 3.95
702 703 8.022550 CCCTCCGTAAACAAATATAAAAACGTT 58.977 33.333 0.00 0.00 0.00 3.99
703 704 7.390162 TCCCTCCGTAAACAAATATAAAAACGT 59.610 33.333 0.00 0.00 0.00 3.99
704 705 7.750769 TCCCTCCGTAAACAAATATAAAAACG 58.249 34.615 0.00 0.00 0.00 3.60
705 706 8.733458 ACTCCCTCCGTAAACAAATATAAAAAC 58.267 33.333 0.00 0.00 0.00 2.43
706 707 8.866970 ACTCCCTCCGTAAACAAATATAAAAA 57.133 30.769 0.00 0.00 0.00 1.94
707 708 9.956640 TTACTCCCTCCGTAAACAAATATAAAA 57.043 29.630 0.00 0.00 0.00 1.52
708 709 9.382275 GTTACTCCCTCCGTAAACAAATATAAA 57.618 33.333 0.00 0.00 0.00 1.40
709 710 8.761689 AGTTACTCCCTCCGTAAACAAATATAA 58.238 33.333 0.00 0.00 0.00 0.98
710 711 8.310122 AGTTACTCCCTCCGTAAACAAATATA 57.690 34.615 0.00 0.00 0.00 0.86
711 712 7.093201 TGAGTTACTCCCTCCGTAAACAAATAT 60.093 37.037 10.10 0.00 0.00 1.28
712 713 6.211184 TGAGTTACTCCCTCCGTAAACAAATA 59.789 38.462 10.10 0.00 0.00 1.40
713 714 5.012354 TGAGTTACTCCCTCCGTAAACAAAT 59.988 40.000 10.10 0.00 0.00 2.32
714 715 4.344679 TGAGTTACTCCCTCCGTAAACAAA 59.655 41.667 10.10 0.00 0.00 2.83
715 716 3.896888 TGAGTTACTCCCTCCGTAAACAA 59.103 43.478 10.10 0.00 0.00 2.83
716 717 3.256631 GTGAGTTACTCCCTCCGTAAACA 59.743 47.826 10.10 0.00 0.00 2.83
717 718 3.256631 TGTGAGTTACTCCCTCCGTAAAC 59.743 47.826 10.10 0.00 0.00 2.01
718 719 3.499338 TGTGAGTTACTCCCTCCGTAAA 58.501 45.455 10.10 0.00 0.00 2.01
719 720 3.159213 TGTGAGTTACTCCCTCCGTAA 57.841 47.619 10.10 0.00 0.00 3.18
720 721 2.885135 TGTGAGTTACTCCCTCCGTA 57.115 50.000 10.10 0.00 0.00 4.02
721 722 1.825474 CATGTGAGTTACTCCCTCCGT 59.175 52.381 10.10 0.00 0.00 4.69
722 723 1.137086 CCATGTGAGTTACTCCCTCCG 59.863 57.143 10.10 0.00 0.00 4.63
723 724 2.188817 ACCATGTGAGTTACTCCCTCC 58.811 52.381 10.10 0.00 0.00 4.30
724 725 3.132467 GGTACCATGTGAGTTACTCCCTC 59.868 52.174 7.15 1.62 0.00 4.30
725 726 3.105283 GGTACCATGTGAGTTACTCCCT 58.895 50.000 7.15 0.00 0.00 4.20
726 727 2.835764 TGGTACCATGTGAGTTACTCCC 59.164 50.000 11.60 0.00 0.00 4.30
727 728 3.514309 AGTGGTACCATGTGAGTTACTCC 59.486 47.826 19.72 0.00 0.00 3.85
728 729 4.803098 AGTGGTACCATGTGAGTTACTC 57.197 45.455 19.72 5.27 0.00 2.59
729 730 4.802918 GCAAGTGGTACCATGTGAGTTACT 60.803 45.833 24.61 10.23 0.00 2.24
730 731 3.435671 GCAAGTGGTACCATGTGAGTTAC 59.564 47.826 24.61 8.28 0.00 2.50
731 732 3.071747 TGCAAGTGGTACCATGTGAGTTA 59.928 43.478 24.61 9.72 0.00 2.24
732 733 2.158682 TGCAAGTGGTACCATGTGAGTT 60.159 45.455 24.61 7.52 0.00 3.01
733 734 1.419762 TGCAAGTGGTACCATGTGAGT 59.580 47.619 24.61 1.80 0.00 3.41
734 735 2.183478 TGCAAGTGGTACCATGTGAG 57.817 50.000 24.61 12.99 0.00 3.51
735 736 2.647683 TTGCAAGTGGTACCATGTGA 57.352 45.000 24.61 9.44 0.00 3.58
736 737 3.724508 TTTTGCAAGTGGTACCATGTG 57.275 42.857 19.72 19.17 0.00 3.21
737 738 3.704061 AGTTTTTGCAAGTGGTACCATGT 59.296 39.130 19.72 5.83 0.00 3.21
738 739 4.320608 AGTTTTTGCAAGTGGTACCATG 57.679 40.909 19.72 14.58 0.00 3.66
739 740 4.279922 GGTAGTTTTTGCAAGTGGTACCAT 59.720 41.667 19.72 0.00 30.91 3.55
740 741 3.633065 GGTAGTTTTTGCAAGTGGTACCA 59.367 43.478 11.60 11.60 30.91 3.25
741 742 3.304190 CGGTAGTTTTTGCAAGTGGTACC 60.304 47.826 4.43 4.43 0.00 3.34
742 743 3.304190 CCGGTAGTTTTTGCAAGTGGTAC 60.304 47.826 0.00 1.19 0.00 3.34
743 744 2.879646 CCGGTAGTTTTTGCAAGTGGTA 59.120 45.455 0.00 0.00 0.00 3.25
744 745 1.679153 CCGGTAGTTTTTGCAAGTGGT 59.321 47.619 0.00 0.00 0.00 4.16
745 746 1.950909 TCCGGTAGTTTTTGCAAGTGG 59.049 47.619 0.00 0.00 0.00 4.00
746 747 2.616842 ACTCCGGTAGTTTTTGCAAGTG 59.383 45.455 0.00 0.00 33.35 3.16
747 748 2.616842 CACTCCGGTAGTTTTTGCAAGT 59.383 45.455 0.00 0.00 35.76 3.16
748 749 2.875933 TCACTCCGGTAGTTTTTGCAAG 59.124 45.455 0.00 0.00 35.76 4.01
749 750 2.875933 CTCACTCCGGTAGTTTTTGCAA 59.124 45.455 0.00 0.00 35.76 4.08
750 751 2.158871 ACTCACTCCGGTAGTTTTTGCA 60.159 45.455 0.00 0.00 35.76 4.08
751 752 2.223377 CACTCACTCCGGTAGTTTTTGC 59.777 50.000 0.00 0.00 35.76 3.68
759 760 0.324368 ATCCAGCACTCACTCCGGTA 60.324 55.000 0.00 0.00 0.00 4.02
769 770 4.716784 TCAATGTCTACCTAATCCAGCACT 59.283 41.667 0.00 0.00 0.00 4.40
770 771 4.811557 GTCAATGTCTACCTAATCCAGCAC 59.188 45.833 0.00 0.00 0.00 4.40
771 772 4.141711 GGTCAATGTCTACCTAATCCAGCA 60.142 45.833 0.00 0.00 32.72 4.41
773 774 4.621991 CGGTCAATGTCTACCTAATCCAG 58.378 47.826 0.00 0.00 33.34 3.86
776 777 4.051922 CAGCGGTCAATGTCTACCTAATC 58.948 47.826 0.00 0.00 33.34 1.75
777 778 3.451178 ACAGCGGTCAATGTCTACCTAAT 59.549 43.478 0.00 0.00 33.34 1.73
778 779 2.829720 ACAGCGGTCAATGTCTACCTAA 59.170 45.455 0.00 0.00 33.34 2.69
779 780 2.453521 ACAGCGGTCAATGTCTACCTA 58.546 47.619 0.00 0.00 33.34 3.08
783 784 4.081365 TGGATTAACAGCGGTCAATGTCTA 60.081 41.667 0.00 0.00 0.00 2.59
784 785 3.270877 GGATTAACAGCGGTCAATGTCT 58.729 45.455 0.00 0.00 0.00 3.41
786 787 3.066291 TGGATTAACAGCGGTCAATGT 57.934 42.857 0.00 0.00 0.00 2.71
790 791 2.156098 GGTTTGGATTAACAGCGGTCA 58.844 47.619 0.00 0.00 0.00 4.02
797 798 4.280425 GGGTTAAACGGGTTTGGATTAACA 59.720 41.667 7.04 0.00 37.90 2.41
807 808 1.073025 GACGGGGGTTAAACGGGTT 59.927 57.895 0.00 0.00 0.00 4.11
813 814 0.250252 GTGGTTCGACGGGGGTTAAA 60.250 55.000 0.00 0.00 0.00 1.52
819 820 2.663852 GTGTGTGGTTCGACGGGG 60.664 66.667 0.00 0.00 0.00 5.73
820 821 2.107343 TGTGTGTGGTTCGACGGG 59.893 61.111 0.00 0.00 0.00 5.28
821 822 1.519676 TGTGTGTGTGGTTCGACGG 60.520 57.895 0.00 0.00 0.00 4.79
822 823 1.079317 TGTGTGTGTGTGGTTCGACG 61.079 55.000 0.00 0.00 0.00 5.12
823 824 0.372334 GTGTGTGTGTGTGGTTCGAC 59.628 55.000 0.00 0.00 0.00 4.20
824 825 0.741574 GGTGTGTGTGTGTGGTTCGA 60.742 55.000 0.00 0.00 0.00 3.71
826 827 0.732571 CAGGTGTGTGTGTGTGGTTC 59.267 55.000 0.00 0.00 0.00 3.62
827 828 0.679640 CCAGGTGTGTGTGTGTGGTT 60.680 55.000 0.00 0.00 0.00 3.67
828 829 1.077787 CCAGGTGTGTGTGTGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
829 830 0.179020 ATCCAGGTGTGTGTGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
830 831 1.679139 AATCCAGGTGTGTGTGTGTG 58.321 50.000 0.00 0.00 0.00 3.82
831 832 2.023673 CAAATCCAGGTGTGTGTGTGT 58.976 47.619 0.00 0.00 0.00 3.72
832 833 1.269206 GCAAATCCAGGTGTGTGTGTG 60.269 52.381 0.00 0.00 0.00 3.82
833 834 1.032014 GCAAATCCAGGTGTGTGTGT 58.968 50.000 0.00 0.00 0.00 3.72
834 835 1.031235 TGCAAATCCAGGTGTGTGTG 58.969 50.000 0.00 0.00 0.00 3.82
835 836 1.408702 GTTGCAAATCCAGGTGTGTGT 59.591 47.619 0.00 0.00 0.00 3.72
869 880 7.769044 GGTGCTGACCTGATTAAGTTATTAAGA 59.231 37.037 0.00 0.00 39.47 2.10
1424 1463 3.502595 CAGATAGCTAGCTAGTTGGCGTA 59.497 47.826 27.42 5.56 37.29 4.42
1425 1464 2.294791 CAGATAGCTAGCTAGTTGGCGT 59.705 50.000 27.42 10.76 37.29 5.68
1426 1465 2.352225 CCAGATAGCTAGCTAGTTGGCG 60.352 54.545 29.69 16.65 37.29 5.69
1427 1466 2.630580 ACCAGATAGCTAGCTAGTTGGC 59.369 50.000 35.02 21.35 38.47 4.52
1428 1467 3.891977 TCACCAGATAGCTAGCTAGTTGG 59.108 47.826 34.22 34.22 39.65 3.77
1429 1468 4.339530 TGTCACCAGATAGCTAGCTAGTTG 59.660 45.833 27.42 24.50 31.45 3.16
1430 1469 4.537751 TGTCACCAGATAGCTAGCTAGTT 58.462 43.478 27.42 18.30 31.45 2.24
1431 1470 4.171878 TGTCACCAGATAGCTAGCTAGT 57.828 45.455 27.42 17.60 31.45 2.57
1434 1473 4.222336 AGATTGTCACCAGATAGCTAGCT 58.778 43.478 23.12 23.12 0.00 3.32
1435 1474 4.280677 AGAGATTGTCACCAGATAGCTAGC 59.719 45.833 6.62 6.62 0.00 3.42
1438 1477 4.961730 AGAAGAGATTGTCACCAGATAGCT 59.038 41.667 0.00 0.00 0.00 3.32
1440 1479 7.111247 AGAAGAAGAGATTGTCACCAGATAG 57.889 40.000 0.00 0.00 0.00 2.08
1443 1492 5.541868 AGAAGAAGAAGAGATTGTCACCAGA 59.458 40.000 0.00 0.00 0.00 3.86
1445 1494 5.815233 AGAAGAAGAAGAGATTGTCACCA 57.185 39.130 0.00 0.00 0.00 4.17
1495 1574 1.960417 TGCATGAAGAACACAACGGA 58.040 45.000 0.00 0.00 0.00 4.69
1497 1576 2.157474 TCGATGCATGAAGAACACAACG 59.843 45.455 2.46 0.00 0.00 4.10
1498 1577 3.811722 TCGATGCATGAAGAACACAAC 57.188 42.857 2.46 0.00 0.00 3.32
1499 1578 3.062504 CGATCGATGCATGAAGAACACAA 59.937 43.478 10.26 0.00 0.00 3.33
1500 1579 2.604462 CGATCGATGCATGAAGAACACA 59.396 45.455 10.26 0.00 0.00 3.72
1501 1580 2.860136 TCGATCGATGCATGAAGAACAC 59.140 45.455 15.15 0.00 0.00 3.32
1502 1581 3.163630 TCGATCGATGCATGAAGAACA 57.836 42.857 15.15 0.00 0.00 3.18
1504 1583 5.504392 CAAATTCGATCGATGCATGAAGAA 58.496 37.500 20.18 12.04 0.00 2.52
1505 1584 4.553351 GCAAATTCGATCGATGCATGAAGA 60.553 41.667 28.32 9.59 37.00 2.87
1506 1585 3.662645 GCAAATTCGATCGATGCATGAAG 59.337 43.478 28.32 12.30 37.00 3.02
1532 1631 0.027586 ATTAATCGCGGCGACAAAGC 59.972 50.000 28.88 0.00 39.18 3.51
1534 1633 1.732809 TGAATTAATCGCGGCGACAAA 59.267 42.857 28.88 23.24 39.18 2.83
1535 1634 1.360820 TGAATTAATCGCGGCGACAA 58.639 45.000 28.88 23.29 39.18 3.18
1537 1636 3.991605 ATATGAATTAATCGCGGCGAC 57.008 42.857 28.88 14.21 39.18 5.19
1538 1637 5.351233 AAAATATGAATTAATCGCGGCGA 57.649 34.783 28.46 28.46 41.13 5.54
1539 1638 7.201232 CCTTAAAAATATGAATTAATCGCGGCG 60.201 37.037 17.70 17.70 0.00 6.46
1540 1639 7.806014 TCCTTAAAAATATGAATTAATCGCGGC 59.194 33.333 6.13 0.00 0.00 6.53
1548 1647 9.015577 CGCGCTTTTCCTTAAAAATATGAATTA 57.984 29.630 5.56 0.00 36.30 1.40
1549 1648 7.544217 ACGCGCTTTTCCTTAAAAATATGAATT 59.456 29.630 5.73 0.00 36.30 2.17
1550 1649 7.009174 CACGCGCTTTTCCTTAAAAATATGAAT 59.991 33.333 5.73 0.00 36.30 2.57
1551 1650 6.306837 CACGCGCTTTTCCTTAAAAATATGAA 59.693 34.615 5.73 0.00 36.30 2.57
1553 1652 5.498542 GCACGCGCTTTTCCTTAAAAATATG 60.499 40.000 5.73 0.00 36.30 1.78
1727 1849 0.251474 GGGGGTCACCTAACCAAACC 60.251 60.000 0.00 0.00 41.40 3.27
1850 1993 9.280174 TGCTGCTTGTTAGTAGTAGTAATTTTT 57.720 29.630 0.00 0.00 36.58 1.94
1852 1995 7.064728 GCTGCTGCTTGTTAGTAGTAGTAATTT 59.935 37.037 8.53 0.00 44.59 1.82
1853 1996 6.535508 GCTGCTGCTTGTTAGTAGTAGTAATT 59.464 38.462 8.53 0.00 44.59 1.40
1854 1997 6.043411 GCTGCTGCTTGTTAGTAGTAGTAAT 58.957 40.000 8.53 0.00 44.59 1.89
1855 1998 5.408356 GCTGCTGCTTGTTAGTAGTAGTAA 58.592 41.667 8.53 0.00 44.59 2.24
1856 1999 4.995124 GCTGCTGCTTGTTAGTAGTAGTA 58.005 43.478 8.53 0.00 44.59 1.82
1857 2000 3.851098 GCTGCTGCTTGTTAGTAGTAGT 58.149 45.455 8.53 0.00 44.59 2.73
1879 2022 2.818291 TTTGCTGGCTGGCGATGCTA 62.818 55.000 12.83 4.97 34.52 3.49
1881 2024 2.567564 ATTTTGCTGGCTGGCGATGC 62.568 55.000 0.00 1.84 34.52 3.91
1882 2025 0.526954 GATTTTGCTGGCTGGCGATG 60.527 55.000 0.00 0.00 34.52 3.84
1883 2026 1.811860 GATTTTGCTGGCTGGCGAT 59.188 52.632 0.00 0.00 34.52 4.58
1884 2027 2.689785 CGATTTTGCTGGCTGGCGA 61.690 57.895 0.00 0.00 34.52 5.54
1885 2028 2.202518 CGATTTTGCTGGCTGGCG 60.203 61.111 0.00 0.00 34.52 5.69
1936 2112 0.392863 TCATGGCCAACATCTCACCG 60.393 55.000 10.96 0.00 37.84 4.94
1958 2134 2.511600 CTGGTGGAACGATCGGCC 60.512 66.667 20.98 19.78 38.12 6.13
2113 2294 0.859882 CTGCTCATGCTCATACGCAG 59.140 55.000 14.03 14.03 44.10 5.18
2115 2296 1.568514 GCTGCTCATGCTCATACGC 59.431 57.895 0.00 0.00 40.48 4.42
2116 2297 1.851309 CGCTGCTCATGCTCATACG 59.149 57.895 0.00 0.00 40.48 3.06
2118 2299 0.250166 ATGCGCTGCTCATGCTCATA 60.250 50.000 9.73 0.00 40.48 2.15
2119 2300 1.101635 AATGCGCTGCTCATGCTCAT 61.102 50.000 9.73 0.00 40.48 2.90
2120 2301 1.747745 AATGCGCTGCTCATGCTCA 60.748 52.632 9.73 0.00 40.48 4.26
2121 2302 1.298413 CAATGCGCTGCTCATGCTC 60.298 57.895 9.73 0.00 40.48 4.26
2193 2379 9.393249 CACGATTTTAAACTAATGAGAGCAAAA 57.607 29.630 0.00 0.00 0.00 2.44
2208 2394 3.369701 CGCACCGCACGATTTTAAA 57.630 47.368 0.00 0.00 0.00 1.52
2281 2470 6.305877 CACTCGAACTAACTAACTGCACTAAG 59.694 42.308 0.00 0.00 0.00 2.18
2288 2477 5.117355 TCCACACTCGAACTAACTAACTG 57.883 43.478 0.00 0.00 0.00 3.16
2303 2492 2.620115 CACAGCAACAAGATTCCACACT 59.380 45.455 0.00 0.00 0.00 3.55
2323 2512 2.034124 TGATCTGCTCATGATCGTCCA 58.966 47.619 0.00 0.00 42.18 4.02
2324 2513 2.402305 GTGATCTGCTCATGATCGTCC 58.598 52.381 0.00 0.00 42.18 4.79
2325 2514 2.049959 CGTGATCTGCTCATGATCGTC 58.950 52.381 0.00 0.00 42.57 4.20
2326 2515 1.678101 TCGTGATCTGCTCATGATCGT 59.322 47.619 0.00 0.00 43.47 3.73
2432 2621 1.195222 GCGCATTTTGCTTTTTCCTGG 59.805 47.619 0.30 0.00 42.25 4.45
2444 2633 1.266718 AGTTCACACGATGCGCATTTT 59.733 42.857 26.12 11.77 0.00 1.82
2478 2667 1.536284 CGAACTAGCTCGGGTCAATCC 60.536 57.143 7.67 0.00 35.14 3.01
2498 2693 1.131826 CGACACAAAATCGCCGTCC 59.868 57.895 0.00 0.00 31.96 4.79
2527 2735 0.866906 CTGCCAAACAACACACGCAG 60.867 55.000 0.00 0.00 37.93 5.18
2530 2738 1.588667 GCCTGCCAAACAACACACG 60.589 57.895 0.00 0.00 0.00 4.49
2532 2740 2.430610 GGGCCTGCCAAACAACACA 61.431 57.895 10.86 0.00 37.98 3.72
2773 2981 2.125512 GCGATGAAGGGCACGAGT 60.126 61.111 0.00 0.00 0.00 4.18
2986 3218 1.453155 GGATGTACACCTTGCTGTGG 58.547 55.000 0.00 0.00 40.62 4.17
3019 3251 2.283894 TTCCTCCTCAGCGGCAGA 60.284 61.111 1.45 0.00 0.00 4.26
3149 3387 0.108207 CTCATCAGGTCCCTCATGCC 59.892 60.000 0.00 0.00 0.00 4.40
3150 3388 0.534652 GCTCATCAGGTCCCTCATGC 60.535 60.000 0.00 0.00 0.00 4.06
3151 3389 1.129917 AGCTCATCAGGTCCCTCATG 58.870 55.000 0.00 0.00 0.00 3.07
3235 3473 1.803519 GCTGACGAGCGTCTCCTTG 60.804 63.158 21.68 9.40 44.80 3.61
3399 3637 1.812922 GCATGGGAGCGAGTGACAG 60.813 63.158 0.00 0.00 0.00 3.51
3400 3638 2.265739 GCATGGGAGCGAGTGACA 59.734 61.111 0.00 0.00 0.00 3.58
3401 3639 2.103042 GTGCATGGGAGCGAGTGAC 61.103 63.158 0.00 0.00 37.31 3.67
3404 3642 3.362399 CTCGTGCATGGGAGCGAGT 62.362 63.158 12.52 0.00 43.79 4.18
3430 3668 6.211515 GCCATTAATTAGCTGGAAACATGAG 58.788 40.000 16.43 0.00 41.51 2.90
3431 3669 5.221028 CGCCATTAATTAGCTGGAAACATGA 60.221 40.000 16.43 0.00 41.51 3.07
3466 3704 1.456892 ATCCCCACCTGCATGCATG 60.457 57.895 22.97 22.70 0.00 4.06
3922 4161 1.134098 ACATCGACATTGGGGATGGAC 60.134 52.381 17.85 0.00 41.37 4.02
3938 4177 9.057089 AGGAATTAATTGAATCCGACTAACATC 57.943 33.333 5.17 0.00 0.00 3.06
4068 4310 2.788786 GTGGCAAAACTGACAATGAACG 59.211 45.455 0.00 0.00 0.00 3.95
4114 4358 7.981225 GGTTTATGTTGCCAGTATGAAATTCAT 59.019 33.333 13.43 13.43 39.69 2.57
4120 4364 4.157656 GCAGGTTTATGTTGCCAGTATGAA 59.842 41.667 0.00 0.00 39.69 2.57
4127 4371 2.315176 ACTTGCAGGTTTATGTTGCCA 58.685 42.857 0.00 0.00 37.03 4.92
4128 4372 4.718940 ATACTTGCAGGTTTATGTTGCC 57.281 40.909 6.84 0.00 37.03 4.52
4131 4375 4.457603 TGCGAATACTTGCAGGTTTATGTT 59.542 37.500 6.84 0.00 35.90 2.71
4133 4377 4.614555 TGCGAATACTTGCAGGTTTATG 57.385 40.909 6.84 0.00 35.90 1.90
4134 4378 5.048364 TGTTTGCGAATACTTGCAGGTTTAT 60.048 36.000 6.84 0.00 42.89 1.40
4201 4445 4.072131 CACCTGTATGATAAATTCGGGGG 58.928 47.826 0.00 0.00 0.00 5.40
4206 4450 3.363970 CGCCGCACCTGTATGATAAATTC 60.364 47.826 0.00 0.00 0.00 2.17
4211 4456 1.300620 GCGCCGCACCTGTATGATA 60.301 57.895 3.15 0.00 0.00 2.15
4283 4530 1.269517 TGGTTCAAACAAATCTGCCGC 60.270 47.619 0.00 0.00 0.00 6.53
4329 4577 1.998315 CAGCTCGTCATTCCACAAGAG 59.002 52.381 0.00 0.00 0.00 2.85
4337 4585 5.591643 TTTACAGAAACAGCTCGTCATTC 57.408 39.130 0.00 0.00 0.00 2.67
4368 4616 7.556844 ACCCTGTATAGAATTGTCTAGTGTTG 58.443 38.462 0.00 0.00 39.75 3.33
4572 4841 1.655484 TGCAGAGTGTGACACTTGTG 58.345 50.000 20.42 19.65 45.44 3.33
4628 4897 7.860872 CCAAACATAAAAGCTTCGACTTTAGTT 59.139 33.333 0.00 5.28 38.92 2.24
4638 4907 4.686091 GGAGCAACCAAACATAAAAGCTTC 59.314 41.667 0.00 0.00 38.79 3.86
4639 4908 4.100808 TGGAGCAACCAAACATAAAAGCTT 59.899 37.500 0.00 0.00 46.75 3.74
4739 5011 2.637521 TGCTCTTCCTGCAAGCAAG 58.362 52.632 7.55 0.47 42.71 4.01
4805 5077 3.531538 TCCAAACAAGCCTCGTGATATC 58.468 45.455 0.00 0.00 0.00 1.63
4934 5206 6.416750 CCAACCTTCGTACTTGTTTGATTTTC 59.583 38.462 0.00 0.00 0.00 2.29
4951 5223 7.946381 ATTCCTTTATCTCTTTCCAACCTTC 57.054 36.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.