Multiple sequence alignment - TraesCS2D01G142500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G142500 chr2D 100.000 6720 0 0 1 6720 83926427 83933146 0.000000e+00 12410.0
1 TraesCS2D01G142500 chr2D 96.369 358 11 2 159 515 499187331 499187687 7.510000e-164 588.0
2 TraesCS2D01G142500 chr2D 96.620 355 10 2 161 515 572444042 572443690 7.510000e-164 588.0
3 TraesCS2D01G142500 chr2D 93.382 272 15 3 513 783 422643556 422643825 3.780000e-107 399.0
4 TraesCS2D01G142500 chr2D 92.727 55 3 1 2491 2544 228014203 228014257 2.010000e-10 78.7
5 TraesCS2D01G142500 chr2A 96.697 3542 77 15 3211 6720 84938501 84942034 0.000000e+00 5856.0
6 TraesCS2D01G142500 chr2A 95.348 2386 85 8 819 3179 84936123 84938507 0.000000e+00 3768.0
7 TraesCS2D01G142500 chr2A 92.701 274 16 3 519 791 409924103 409923833 6.320000e-105 392.0
8 TraesCS2D01G142500 chr2B 93.784 2397 99 22 2608 4987 136151643 136154006 0.000000e+00 3555.0
9 TraesCS2D01G142500 chr2B 95.662 1706 60 10 5026 6720 136154003 136155705 0.000000e+00 2728.0
10 TraesCS2D01G142500 chr2B 93.862 1792 86 19 822 2598 136149540 136151322 0.000000e+00 2678.0
11 TraesCS2D01G142500 chr2B 92.857 154 6 3 996 1149 780398765 780398617 1.130000e-52 219.0
12 TraesCS2D01G142500 chr2B 100.000 28 0 0 3167 3194 231223887 231223914 1.200000e-02 52.8
13 TraesCS2D01G142500 chr4D 93.115 610 33 8 166 771 8841173 8840569 0.000000e+00 885.0
14 TraesCS2D01G142500 chr4D 97.443 352 6 3 165 515 100851153 100851502 1.250000e-166 597.0
15 TraesCS2D01G142500 chr4D 94.981 259 11 2 519 776 262332773 262332516 8.110000e-109 405.0
16 TraesCS2D01G142500 chr4D 93.836 146 6 1 996 1141 486211881 486211739 4.080000e-52 217.0
17 TraesCS2D01G142500 chr5D 97.421 349 7 2 167 515 511001350 511001696 1.610000e-165 593.0
18 TraesCS2D01G142500 chr5D 95.402 261 11 1 512 771 34087964 34087704 1.350000e-111 414.0
19 TraesCS2D01G142500 chr5D 82.203 118 19 2 2490 2606 362655849 362655965 4.290000e-17 100.0
20 TraesCS2D01G142500 chr6D 96.143 363 10 4 156 515 15085755 15085394 2.090000e-164 590.0
21 TraesCS2D01G142500 chr6D 95.402 261 11 1 512 771 15085481 15085741 1.350000e-111 414.0
22 TraesCS2D01G142500 chr6D 93.750 144 6 2 998 1141 64660421 64660561 5.280000e-51 213.0
23 TraesCS2D01G142500 chr7D 96.629 356 9 3 161 515 491315005 491314652 7.510000e-164 588.0
24 TraesCS2D01G142500 chr7D 94.444 144 6 1 1006 1149 554506735 554506876 3.150000e-53 220.0
25 TraesCS2D01G142500 chr7D 93.836 146 6 1 996 1141 563087630 563087488 4.080000e-52 217.0
26 TraesCS2D01G142500 chr7D 92.105 152 7 3 998 1149 183564723 183564869 6.830000e-50 209.0
27 TraesCS2D01G142500 chr7D 94.545 55 2 1 2491 2544 596127354 596127300 4.320000e-12 84.2
28 TraesCS2D01G142500 chr7D 90.000 60 5 1 2486 2544 165360529 165360588 7.230000e-10 76.8
29 TraesCS2D01G142500 chr3D 97.135 349 8 2 167 515 61825294 61824948 7.510000e-164 588.0
30 TraesCS2D01G142500 chr3D 95.890 365 11 4 154 515 454838743 454839106 7.510000e-164 588.0
31 TraesCS2D01G142500 chr3D 95.000 260 12 1 513 771 309743470 309743729 2.260000e-109 407.0
32 TraesCS2D01G142500 chr3D 93.962 265 14 2 519 781 235608575 235608311 3.780000e-107 399.0
33 TraesCS2D01G142500 chr3D 95.035 141 5 1 1009 1149 111191964 111192102 3.150000e-53 220.0
34 TraesCS2D01G142500 chr1B 94.074 270 14 2 513 780 534405363 534405094 6.270000e-110 409.0
35 TraesCS2D01G142500 chr7A 78.723 423 78 11 6307 6720 546261774 546262193 8.590000e-69 272.0
36 TraesCS2D01G142500 chr1D 93.506 154 5 2 996 1149 285764084 285763936 2.440000e-54 224.0
37 TraesCS2D01G142500 chr1D 94.853 136 7 0 1006 1141 268490411 268490546 5.280000e-51 213.0
38 TraesCS2D01G142500 chr4A 91.558 154 8 2 996 1149 721799247 721799099 2.460000e-49 207.0
39 TraesCS2D01G142500 chr4B 92.908 141 8 1 1009 1149 232727220 232727358 3.180000e-48 204.0
40 TraesCS2D01G142500 chr6B 94.444 54 2 1 2492 2544 692231648 692231701 1.550000e-11 82.4
41 TraesCS2D01G142500 chr6B 90.323 62 5 1 2484 2544 712352683 712352622 5.590000e-11 80.5
42 TraesCS2D01G142500 chrUn 89.831 59 5 1 2487 2544 94995897 94995839 2.600000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G142500 chr2D 83926427 83933146 6719 False 12410 12410 100.0000 1 6720 1 chr2D.!!$F1 6719
1 TraesCS2D01G142500 chr2A 84936123 84942034 5911 False 4812 5856 96.0225 819 6720 2 chr2A.!!$F1 5901
2 TraesCS2D01G142500 chr2B 136149540 136155705 6165 False 2987 3555 94.4360 822 6720 3 chr2B.!!$F2 5898
3 TraesCS2D01G142500 chr4D 8840569 8841173 604 True 885 885 93.1150 166 771 1 chr4D.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.183492 TGGCTTGATACTCCCCATGC 59.817 55.000 0.0 0.0 34.09 4.06 F
159 160 0.183492 GCTTGATACTCCCCATGCCA 59.817 55.000 0.0 0.0 0.00 4.92 F
210 211 0.616891 GTTGGTTCCTATCCACGGGT 59.383 55.000 0.0 0.0 34.45 5.28 F
1286 1293 0.111061 AATGCCAGTGCTTCAGTCCA 59.889 50.000 0.0 0.0 38.71 4.02 F
1873 1897 0.038892 CACATTTGGAGCCTGCACAC 60.039 55.000 0.0 0.0 0.00 3.82 F
3063 3401 0.819582 CCGCTGGAAAATGCCATTCT 59.180 50.000 0.0 0.0 37.30 2.40 F
4178 4522 1.269257 GCTTGGTTCTTCACTGTTGCC 60.269 52.381 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1184 1191 0.972883 GAGAAGATGCTAGCCCCGAT 59.027 55.000 13.29 0.0 0.00 4.18 R
1218 1225 1.000896 AAGGCAATCCCAACTCCCG 60.001 57.895 0.00 0.0 35.39 5.14 R
1852 1876 1.228644 TGCAGGCTCCAAATGTGCT 60.229 52.632 0.00 0.0 35.11 4.40 R
3169 3509 0.918983 AGGGATGAAAATGGAGCGGA 59.081 50.000 0.00 0.0 0.00 5.54 R
3608 3951 0.107643 TCAAGGCACACATGTCGGAA 59.892 50.000 0.00 0.0 34.75 4.30 R
4958 5310 3.118408 AGCCTGACACTCAAACAGTACAA 60.118 43.478 0.00 0.0 32.21 2.41 R
5852 6228 2.349590 TCATGCTCTTGTGGAATGACG 58.650 47.619 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.985877 TGCAGCCATTGTTCGAGG 58.014 55.556 0.00 0.00 0.00 4.63
18 19 1.675310 TGCAGCCATTGTTCGAGGG 60.675 57.895 0.00 0.00 0.00 4.30
19 20 1.377202 GCAGCCATTGTTCGAGGGA 60.377 57.895 0.00 0.00 0.00 4.20
20 21 0.749454 GCAGCCATTGTTCGAGGGAT 60.749 55.000 0.00 0.00 0.00 3.85
21 22 1.755179 CAGCCATTGTTCGAGGGATT 58.245 50.000 0.00 0.00 0.00 3.01
22 23 2.917933 CAGCCATTGTTCGAGGGATTA 58.082 47.619 0.00 0.00 0.00 1.75
23 24 3.278574 CAGCCATTGTTCGAGGGATTAA 58.721 45.455 0.00 0.00 0.00 1.40
24 25 3.065371 CAGCCATTGTTCGAGGGATTAAC 59.935 47.826 0.00 0.00 0.00 2.01
25 26 3.054361 AGCCATTGTTCGAGGGATTAACT 60.054 43.478 0.00 0.00 0.00 2.24
26 27 3.694566 GCCATTGTTCGAGGGATTAACTT 59.305 43.478 0.00 0.00 0.00 2.66
27 28 4.201920 GCCATTGTTCGAGGGATTAACTTC 60.202 45.833 0.00 0.00 0.00 3.01
28 29 4.941263 CCATTGTTCGAGGGATTAACTTCA 59.059 41.667 0.00 0.00 0.00 3.02
29 30 5.065218 CCATTGTTCGAGGGATTAACTTCAG 59.935 44.000 0.00 0.00 0.00 3.02
30 31 4.202245 TGTTCGAGGGATTAACTTCAGG 57.798 45.455 0.00 0.00 0.00 3.86
31 32 3.835978 TGTTCGAGGGATTAACTTCAGGA 59.164 43.478 0.00 0.00 0.00 3.86
32 33 4.081642 TGTTCGAGGGATTAACTTCAGGAG 60.082 45.833 0.00 0.00 0.00 3.69
33 34 3.977312 TCGAGGGATTAACTTCAGGAGA 58.023 45.455 0.00 0.00 0.00 3.71
34 35 4.547671 TCGAGGGATTAACTTCAGGAGAT 58.452 43.478 0.00 0.00 0.00 2.75
35 36 5.702266 TCGAGGGATTAACTTCAGGAGATA 58.298 41.667 0.00 0.00 0.00 1.98
36 37 5.535406 TCGAGGGATTAACTTCAGGAGATAC 59.465 44.000 0.00 0.00 0.00 2.24
37 38 5.563085 CGAGGGATTAACTTCAGGAGATACG 60.563 48.000 0.00 0.00 0.00 3.06
38 39 5.455872 AGGGATTAACTTCAGGAGATACGA 58.544 41.667 0.00 0.00 0.00 3.43
39 40 5.536916 AGGGATTAACTTCAGGAGATACGAG 59.463 44.000 0.00 0.00 0.00 4.18
40 41 5.302313 GGGATTAACTTCAGGAGATACGAGT 59.698 44.000 0.00 0.00 0.00 4.18
41 42 6.183360 GGGATTAACTTCAGGAGATACGAGTT 60.183 42.308 0.00 0.00 0.00 3.01
42 43 7.266400 GGATTAACTTCAGGAGATACGAGTTT 58.734 38.462 0.00 0.00 0.00 2.66
43 44 7.222999 GGATTAACTTCAGGAGATACGAGTTTG 59.777 40.741 0.00 0.00 0.00 2.93
44 45 5.723672 AACTTCAGGAGATACGAGTTTGA 57.276 39.130 0.00 0.00 0.00 2.69
45 46 5.723672 ACTTCAGGAGATACGAGTTTGAA 57.276 39.130 0.00 0.00 0.00 2.69
46 47 5.715070 ACTTCAGGAGATACGAGTTTGAAG 58.285 41.667 9.14 9.14 43.32 3.02
47 48 4.111375 TCAGGAGATACGAGTTTGAAGC 57.889 45.455 0.00 0.00 0.00 3.86
48 49 3.764434 TCAGGAGATACGAGTTTGAAGCT 59.236 43.478 0.00 0.00 0.00 3.74
49 50 4.220821 TCAGGAGATACGAGTTTGAAGCTT 59.779 41.667 0.00 0.00 0.00 3.74
50 51 4.328440 CAGGAGATACGAGTTTGAAGCTTG 59.672 45.833 2.10 0.00 0.00 4.01
51 52 3.062774 GGAGATACGAGTTTGAAGCTTGC 59.937 47.826 2.10 0.00 0.00 4.01
52 53 3.003480 AGATACGAGTTTGAAGCTTGCC 58.997 45.455 2.10 0.00 0.00 4.52
53 54 2.248280 TACGAGTTTGAAGCTTGCCA 57.752 45.000 2.10 0.00 0.00 4.92
54 55 1.388547 ACGAGTTTGAAGCTTGCCAA 58.611 45.000 2.10 0.00 0.00 4.52
55 56 1.956477 ACGAGTTTGAAGCTTGCCAAT 59.044 42.857 2.10 0.00 0.00 3.16
56 57 2.362077 ACGAGTTTGAAGCTTGCCAATT 59.638 40.909 2.10 0.00 0.00 2.32
57 58 3.181476 ACGAGTTTGAAGCTTGCCAATTT 60.181 39.130 2.10 0.00 0.00 1.82
58 59 4.037446 ACGAGTTTGAAGCTTGCCAATTTA 59.963 37.500 2.10 0.00 0.00 1.40
59 60 4.618489 CGAGTTTGAAGCTTGCCAATTTAG 59.382 41.667 2.10 0.00 0.00 1.85
60 61 4.309933 AGTTTGAAGCTTGCCAATTTAGC 58.690 39.130 2.10 0.00 35.16 3.09
61 62 3.317603 TTGAAGCTTGCCAATTTAGCC 57.682 42.857 2.10 0.00 35.53 3.93
62 63 2.246469 TGAAGCTTGCCAATTTAGCCA 58.754 42.857 2.10 0.00 35.53 4.75
63 64 2.833338 TGAAGCTTGCCAATTTAGCCAT 59.167 40.909 2.10 0.00 35.53 4.40
64 65 2.973694 AGCTTGCCAATTTAGCCATG 57.026 45.000 0.00 0.00 35.53 3.66
65 66 2.459644 AGCTTGCCAATTTAGCCATGA 58.540 42.857 0.00 0.00 35.53 3.07
66 67 2.429610 AGCTTGCCAATTTAGCCATGAG 59.570 45.455 0.00 0.00 35.53 2.90
67 68 2.428171 GCTTGCCAATTTAGCCATGAGA 59.572 45.455 0.00 0.00 0.00 3.27
68 69 3.490419 GCTTGCCAATTTAGCCATGAGAG 60.490 47.826 0.00 0.00 0.00 3.20
69 70 3.370840 TGCCAATTTAGCCATGAGAGT 57.629 42.857 0.00 0.00 0.00 3.24
70 71 4.502105 TGCCAATTTAGCCATGAGAGTA 57.498 40.909 0.00 0.00 0.00 2.59
71 72 4.454678 TGCCAATTTAGCCATGAGAGTAG 58.545 43.478 0.00 0.00 0.00 2.57
72 73 4.164030 TGCCAATTTAGCCATGAGAGTAGA 59.836 41.667 0.00 0.00 0.00 2.59
73 74 5.126067 GCCAATTTAGCCATGAGAGTAGAA 58.874 41.667 0.00 0.00 0.00 2.10
74 75 5.590259 GCCAATTTAGCCATGAGAGTAGAAA 59.410 40.000 0.00 0.00 0.00 2.52
75 76 6.458888 GCCAATTTAGCCATGAGAGTAGAAAC 60.459 42.308 0.00 0.00 0.00 2.78
76 77 6.599244 CCAATTTAGCCATGAGAGTAGAAACA 59.401 38.462 0.00 0.00 0.00 2.83
77 78 7.121168 CCAATTTAGCCATGAGAGTAGAAACAA 59.879 37.037 0.00 0.00 0.00 2.83
78 79 8.680903 CAATTTAGCCATGAGAGTAGAAACAAT 58.319 33.333 0.00 0.00 0.00 2.71
79 80 9.905713 AATTTAGCCATGAGAGTAGAAACAATA 57.094 29.630 0.00 0.00 0.00 1.90
80 81 9.905713 ATTTAGCCATGAGAGTAGAAACAATAA 57.094 29.630 0.00 0.00 0.00 1.40
81 82 9.905713 TTTAGCCATGAGAGTAGAAACAATAAT 57.094 29.630 0.00 0.00 0.00 1.28
82 83 9.905713 TTAGCCATGAGAGTAGAAACAATAATT 57.094 29.630 0.00 0.00 0.00 1.40
83 84 8.814038 AGCCATGAGAGTAGAAACAATAATTT 57.186 30.769 0.00 0.00 0.00 1.82
84 85 9.247861 AGCCATGAGAGTAGAAACAATAATTTT 57.752 29.630 0.00 0.00 0.00 1.82
85 86 9.294030 GCCATGAGAGTAGAAACAATAATTTTG 57.706 33.333 0.00 0.00 0.00 2.44
90 91 9.561270 GAGAGTAGAAACAATAATTTTGAAGCC 57.439 33.333 7.18 0.00 0.00 4.35
91 92 8.523658 AGAGTAGAAACAATAATTTTGAAGCCC 58.476 33.333 7.18 0.00 0.00 5.19
92 93 8.189119 AGTAGAAACAATAATTTTGAAGCCCA 57.811 30.769 7.18 0.00 0.00 5.36
93 94 8.088365 AGTAGAAACAATAATTTTGAAGCCCAC 58.912 33.333 7.18 0.00 0.00 4.61
94 95 7.066307 AGAAACAATAATTTTGAAGCCCACT 57.934 32.000 7.18 0.00 0.00 4.00
95 96 8.189119 AGAAACAATAATTTTGAAGCCCACTA 57.811 30.769 7.18 0.00 0.00 2.74
96 97 8.815912 AGAAACAATAATTTTGAAGCCCACTAT 58.184 29.630 7.18 0.00 0.00 2.12
97 98 9.087424 GAAACAATAATTTTGAAGCCCACTATC 57.913 33.333 7.18 0.00 0.00 2.08
98 99 7.961326 ACAATAATTTTGAAGCCCACTATCT 57.039 32.000 7.18 0.00 0.00 1.98
99 100 9.474313 AACAATAATTTTGAAGCCCACTATCTA 57.526 29.630 7.18 0.00 0.00 1.98
100 101 9.125026 ACAATAATTTTGAAGCCCACTATCTAG 57.875 33.333 7.18 0.00 0.00 2.43
101 102 7.751768 ATAATTTTGAAGCCCACTATCTAGC 57.248 36.000 0.00 0.00 0.00 3.42
102 103 4.844349 TTTTGAAGCCCACTATCTAGCT 57.156 40.909 0.00 0.00 37.10 3.32
103 104 5.950544 TTTTGAAGCCCACTATCTAGCTA 57.049 39.130 0.00 0.00 34.49 3.32
104 105 5.950544 TTTGAAGCCCACTATCTAGCTAA 57.049 39.130 0.00 0.00 34.49 3.09
105 106 4.939052 TGAAGCCCACTATCTAGCTAAC 57.061 45.455 0.00 0.00 34.49 2.34
106 107 4.547671 TGAAGCCCACTATCTAGCTAACT 58.452 43.478 0.00 0.00 34.49 2.24
107 108 4.962995 TGAAGCCCACTATCTAGCTAACTT 59.037 41.667 0.00 0.00 34.49 2.66
108 109 5.425539 TGAAGCCCACTATCTAGCTAACTTT 59.574 40.000 0.00 0.00 34.49 2.66
109 110 5.959583 AGCCCACTATCTAGCTAACTTTT 57.040 39.130 0.00 0.00 32.73 2.27
110 111 5.919755 AGCCCACTATCTAGCTAACTTTTC 58.080 41.667 0.00 0.00 32.73 2.29
111 112 5.663556 AGCCCACTATCTAGCTAACTTTTCT 59.336 40.000 0.00 0.00 32.73 2.52
112 113 5.986741 GCCCACTATCTAGCTAACTTTTCTC 59.013 44.000 0.00 0.00 0.00 2.87
113 114 6.210078 CCCACTATCTAGCTAACTTTTCTCG 58.790 44.000 0.00 0.00 0.00 4.04
114 115 6.183360 CCCACTATCTAGCTAACTTTTCTCGT 60.183 42.308 0.00 0.00 0.00 4.18
115 116 7.259161 CCACTATCTAGCTAACTTTTCTCGTT 58.741 38.462 0.00 0.00 0.00 3.85
116 117 7.432838 CCACTATCTAGCTAACTTTTCTCGTTC 59.567 40.741 0.00 0.00 0.00 3.95
117 118 8.185505 CACTATCTAGCTAACTTTTCTCGTTCT 58.814 37.037 0.00 0.00 0.00 3.01
118 119 8.400186 ACTATCTAGCTAACTTTTCTCGTTCTC 58.600 37.037 0.00 0.00 0.00 2.87
119 120 5.629097 TCTAGCTAACTTTTCTCGTTCTCG 58.371 41.667 0.00 0.00 38.55 4.04
120 121 4.240175 AGCTAACTTTTCTCGTTCTCGT 57.760 40.909 0.00 0.00 38.33 4.18
121 122 3.982058 AGCTAACTTTTCTCGTTCTCGTG 59.018 43.478 0.00 0.00 38.33 4.35
122 123 3.121445 GCTAACTTTTCTCGTTCTCGTGG 59.879 47.826 0.00 0.00 38.33 4.94
123 124 2.150397 ACTTTTCTCGTTCTCGTGGG 57.850 50.000 0.00 0.00 38.33 4.61
124 125 1.411612 ACTTTTCTCGTTCTCGTGGGT 59.588 47.619 0.00 0.00 38.33 4.51
125 126 2.624838 ACTTTTCTCGTTCTCGTGGGTA 59.375 45.455 0.00 0.00 38.33 3.69
126 127 3.243336 CTTTTCTCGTTCTCGTGGGTAG 58.757 50.000 0.00 0.00 38.33 3.18
127 128 1.171308 TTCTCGTTCTCGTGGGTAGG 58.829 55.000 0.00 0.00 38.33 3.18
128 129 0.325933 TCTCGTTCTCGTGGGTAGGA 59.674 55.000 0.00 0.00 38.33 2.94
129 130 0.450983 CTCGTTCTCGTGGGTAGGAC 59.549 60.000 0.00 0.00 38.33 3.85
130 131 1.136147 CGTTCTCGTGGGTAGGACG 59.864 63.158 0.00 0.00 39.43 4.79
131 132 1.153881 GTTCTCGTGGGTAGGACGC 60.154 63.158 0.00 0.00 36.75 5.19
132 133 2.345760 TTCTCGTGGGTAGGACGCC 61.346 63.158 0.00 0.00 36.75 5.68
133 134 3.066190 CTCGTGGGTAGGACGCCA 61.066 66.667 0.00 0.00 36.75 5.69
134 135 2.363276 TCGTGGGTAGGACGCCAT 60.363 61.111 0.00 0.00 36.75 4.40
135 136 1.076850 TCGTGGGTAGGACGCCATA 60.077 57.895 0.00 0.00 36.75 2.74
136 137 0.468585 TCGTGGGTAGGACGCCATAT 60.469 55.000 0.00 0.00 36.75 1.78
137 138 0.391597 CGTGGGTAGGACGCCATATT 59.608 55.000 0.00 0.00 0.00 1.28
138 139 1.202604 CGTGGGTAGGACGCCATATTT 60.203 52.381 0.00 0.00 0.00 1.40
139 140 2.218603 GTGGGTAGGACGCCATATTTG 58.781 52.381 0.00 0.00 0.00 2.32
140 141 1.142060 TGGGTAGGACGCCATATTTGG 59.858 52.381 0.00 0.00 46.66 3.28
153 154 4.082125 CCATATTTGGCTTGATACTCCCC 58.918 47.826 0.00 0.00 35.85 4.81
154 155 4.447616 CCATATTTGGCTTGATACTCCCCA 60.448 45.833 0.00 0.00 35.85 4.96
155 156 3.979501 ATTTGGCTTGATACTCCCCAT 57.020 42.857 0.00 0.00 0.00 4.00
156 157 2.734755 TTGGCTTGATACTCCCCATG 57.265 50.000 0.00 0.00 0.00 3.66
157 158 0.183492 TGGCTTGATACTCCCCATGC 59.817 55.000 0.00 0.00 34.09 4.06
158 159 0.538287 GGCTTGATACTCCCCATGCC 60.538 60.000 0.00 0.00 43.26 4.40
159 160 0.183492 GCTTGATACTCCCCATGCCA 59.817 55.000 0.00 0.00 0.00 4.92
160 161 1.202976 GCTTGATACTCCCCATGCCAT 60.203 52.381 0.00 0.00 0.00 4.40
161 162 2.754186 GCTTGATACTCCCCATGCCATT 60.754 50.000 0.00 0.00 0.00 3.16
162 163 3.569491 CTTGATACTCCCCATGCCATTT 58.431 45.455 0.00 0.00 0.00 2.32
163 164 2.948115 TGATACTCCCCATGCCATTTG 58.052 47.619 0.00 0.00 0.00 2.32
164 165 2.244510 TGATACTCCCCATGCCATTTGT 59.755 45.455 0.00 0.00 0.00 2.83
202 203 6.723471 TTTTTACCCCTAGTTGGTTCCTAT 57.277 37.500 6.51 0.00 37.31 2.57
210 211 0.616891 GTTGGTTCCTATCCACGGGT 59.383 55.000 0.00 0.00 34.45 5.28
244 245 4.142381 ACTTTTCGAGCTTGCTCAGTTTTT 60.142 37.500 20.59 0.19 0.00 1.94
262 263 4.816786 TTTTCCCTTACTTTTTCCGTCG 57.183 40.909 0.00 0.00 0.00 5.12
263 264 3.749665 TTCCCTTACTTTTTCCGTCGA 57.250 42.857 0.00 0.00 0.00 4.20
413 414 2.798976 TGCATTCAGGACAAAAGCAC 57.201 45.000 0.00 0.00 0.00 4.40
415 416 1.666888 GCATTCAGGACAAAAGCACCG 60.667 52.381 0.00 0.00 0.00 4.94
427 428 4.202040 ACAAAAGCACCGTTTAAACTACCC 60.202 41.667 16.01 2.92 0.00 3.69
441 442 9.166173 GTTTAAACTACCCGAGGTAATTAATGT 57.834 33.333 11.18 4.42 37.76 2.71
516 517 9.664332 AATAAAAATTACATGCAAATGTAGGCA 57.336 25.926 0.00 0.00 45.23 4.75
517 518 7.976135 AAAAATTACATGCAAATGTAGGCAA 57.024 28.000 0.00 0.00 44.20 4.52
524 525 9.664332 TTACATGCAAATGTAGGCAATTTAAAT 57.336 25.926 0.00 0.00 44.20 1.40
552 553 6.101332 GCTTTTGTCCTGAATGCAAATGATA 58.899 36.000 0.00 0.00 33.00 2.15
613 614 7.816945 ATCTTATTTGCATTTTTCCGAGTTG 57.183 32.000 0.00 0.00 0.00 3.16
618 619 9.868277 TTATTTGCATTTTTCCGAGTTGATATT 57.132 25.926 0.00 0.00 0.00 1.28
708 709 3.295973 AGTAAGGGCAAAACTGAGCAAA 58.704 40.909 0.00 0.00 0.00 3.68
730 731 3.002965 ACTCGAAAAGTAAGGGCAAAACG 59.997 43.478 0.00 0.00 36.07 3.60
759 760 4.652679 AGGAACCAACTAGGGGTAAAAG 57.347 45.455 8.59 0.00 43.89 2.27
760 761 3.332783 AGGAACCAACTAGGGGTAAAAGG 59.667 47.826 8.59 0.00 43.89 3.11
761 762 2.893215 ACCAACTAGGGGTAAAAGGC 57.107 50.000 6.57 0.00 43.89 4.35
762 763 2.067386 ACCAACTAGGGGTAAAAGGCA 58.933 47.619 6.57 0.00 43.89 4.75
763 764 2.447811 ACCAACTAGGGGTAAAAGGCAA 59.552 45.455 6.57 0.00 43.89 4.52
764 765 2.823747 CCAACTAGGGGTAAAAGGCAAC 59.176 50.000 0.00 0.00 0.00 4.17
766 767 7.970128 ACCAACTAGGGGTAAAAGGCAACTG 62.970 48.000 6.57 0.00 46.65 3.16
777 778 2.745379 GGCAACTGTCCCCATTTGT 58.255 52.632 0.00 0.00 34.63 2.83
778 779 1.917872 GGCAACTGTCCCCATTTGTA 58.082 50.000 0.00 0.00 34.63 2.41
779 780 2.243810 GGCAACTGTCCCCATTTGTAA 58.756 47.619 0.00 0.00 34.63 2.41
780 781 2.831526 GGCAACTGTCCCCATTTGTAAT 59.168 45.455 0.00 0.00 34.63 1.89
781 782 3.260632 GGCAACTGTCCCCATTTGTAATT 59.739 43.478 0.00 0.00 34.63 1.40
782 783 4.464597 GGCAACTGTCCCCATTTGTAATTA 59.535 41.667 0.00 0.00 34.63 1.40
783 784 5.128663 GGCAACTGTCCCCATTTGTAATTAT 59.871 40.000 0.00 0.00 34.63 1.28
784 785 6.273071 GCAACTGTCCCCATTTGTAATTATC 58.727 40.000 0.00 0.00 34.63 1.75
785 786 6.682861 GCAACTGTCCCCATTTGTAATTATCC 60.683 42.308 0.00 0.00 34.63 2.59
786 787 5.454966 ACTGTCCCCATTTGTAATTATCCC 58.545 41.667 0.00 0.00 0.00 3.85
787 788 5.043732 ACTGTCCCCATTTGTAATTATCCCA 60.044 40.000 0.00 0.00 0.00 4.37
788 789 6.036926 TGTCCCCATTTGTAATTATCCCAT 57.963 37.500 0.00 0.00 0.00 4.00
789 790 5.837979 TGTCCCCATTTGTAATTATCCCATG 59.162 40.000 0.00 0.00 0.00 3.66
790 791 6.074648 GTCCCCATTTGTAATTATCCCATGA 58.925 40.000 0.00 0.00 0.00 3.07
791 792 6.553100 GTCCCCATTTGTAATTATCCCATGAA 59.447 38.462 0.00 0.00 0.00 2.57
792 793 6.553100 TCCCCATTTGTAATTATCCCATGAAC 59.447 38.462 0.00 0.00 0.00 3.18
793 794 6.326064 CCCCATTTGTAATTATCCCATGAACA 59.674 38.462 0.00 0.00 0.00 3.18
794 795 7.436118 CCCATTTGTAATTATCCCATGAACAG 58.564 38.462 0.00 0.00 0.00 3.16
795 796 7.069826 CCCATTTGTAATTATCCCATGAACAGT 59.930 37.037 0.00 0.00 0.00 3.55
796 797 7.922278 CCATTTGTAATTATCCCATGAACAGTG 59.078 37.037 0.00 0.00 0.00 3.66
797 798 8.685427 CATTTGTAATTATCCCATGAACAGTGA 58.315 33.333 0.00 0.00 0.00 3.41
798 799 8.642935 TTTGTAATTATCCCATGAACAGTGAA 57.357 30.769 0.00 0.00 0.00 3.18
799 800 8.821686 TTGTAATTATCCCATGAACAGTGAAT 57.178 30.769 0.00 0.00 0.00 2.57
800 801 9.913310 TTGTAATTATCCCATGAACAGTGAATA 57.087 29.630 0.00 0.00 0.00 1.75
801 802 9.913310 TGTAATTATCCCATGAACAGTGAATAA 57.087 29.630 0.00 0.00 0.00 1.40
804 805 9.699410 AATTATCCCATGAACAGTGAATAAAGA 57.301 29.630 0.00 0.00 0.00 2.52
805 806 8.737168 TTATCCCATGAACAGTGAATAAAGAG 57.263 34.615 0.00 0.00 0.00 2.85
806 807 5.500234 TCCCATGAACAGTGAATAAAGAGG 58.500 41.667 0.00 0.00 0.00 3.69
807 808 5.250543 TCCCATGAACAGTGAATAAAGAGGA 59.749 40.000 0.00 0.00 0.00 3.71
808 809 5.587844 CCCATGAACAGTGAATAAAGAGGAG 59.412 44.000 0.00 0.00 0.00 3.69
809 810 6.176183 CCATGAACAGTGAATAAAGAGGAGT 58.824 40.000 0.00 0.00 0.00 3.85
810 811 6.093219 CCATGAACAGTGAATAAAGAGGAGTG 59.907 42.308 0.00 0.00 0.00 3.51
811 812 5.551233 TGAACAGTGAATAAAGAGGAGTGG 58.449 41.667 0.00 0.00 0.00 4.00
812 813 4.559862 ACAGTGAATAAAGAGGAGTGGG 57.440 45.455 0.00 0.00 0.00 4.61
813 814 4.168101 ACAGTGAATAAAGAGGAGTGGGA 58.832 43.478 0.00 0.00 0.00 4.37
814 815 4.785376 ACAGTGAATAAAGAGGAGTGGGAT 59.215 41.667 0.00 0.00 0.00 3.85
815 816 5.251700 ACAGTGAATAAAGAGGAGTGGGATT 59.748 40.000 0.00 0.00 0.00 3.01
816 817 6.183347 CAGTGAATAAAGAGGAGTGGGATTT 58.817 40.000 0.00 0.00 0.00 2.17
817 818 6.660949 CAGTGAATAAAGAGGAGTGGGATTTT 59.339 38.462 0.00 0.00 0.00 1.82
818 819 7.177392 CAGTGAATAAAGAGGAGTGGGATTTTT 59.823 37.037 0.00 0.00 0.00 1.94
819 820 7.394641 AGTGAATAAAGAGGAGTGGGATTTTTC 59.605 37.037 0.00 0.00 0.00 2.29
820 821 7.394641 GTGAATAAAGAGGAGTGGGATTTTTCT 59.605 37.037 0.00 0.00 0.00 2.52
825 826 8.727100 AAAGAGGAGTGGGATTTTTCTAAAAT 57.273 30.769 0.00 0.00 0.00 1.82
951 956 2.815647 GTCTCGGCTCGGCTTTGG 60.816 66.667 0.00 0.00 0.00 3.28
1174 1181 2.683933 ACTTCCCGGCCGATCTGT 60.684 61.111 30.73 17.04 0.00 3.41
1209 1216 1.696336 GGCTAGCATCTTCTCATCCCA 59.304 52.381 18.24 0.00 0.00 4.37
1212 1219 4.396522 GCTAGCATCTTCTCATCCCAATT 58.603 43.478 10.63 0.00 0.00 2.32
1286 1293 0.111061 AATGCCAGTGCTTCAGTCCA 59.889 50.000 0.00 0.00 38.71 4.02
1325 1332 2.128771 ACTGGCAGTGAAAGTTGTGT 57.871 45.000 21.37 0.00 0.00 3.72
1335 1342 6.073058 GCAGTGAAAGTTGTGTCTTCATATGA 60.073 38.462 0.00 0.00 0.00 2.15
1536 1560 1.380785 CCCCAATGCTGGTGCTCAT 60.381 57.895 0.00 0.00 41.72 2.90
1619 1643 3.616076 CGCCTGATAAGGGAATAGCTCAG 60.616 52.174 0.00 0.00 0.00 3.35
1701 1725 3.607439 CGTTACGCCATGCATCTAAAAG 58.393 45.455 0.00 0.00 0.00 2.27
1793 1817 4.022589 TCTCACTACTTGTACCTCCAAACG 60.023 45.833 0.00 0.00 0.00 3.60
1801 1825 2.292016 TGTACCTCCAAACGTGCATTTG 59.708 45.455 5.90 5.90 38.96 2.32
1852 1876 0.469705 AGGTGGGCTGCAAATGTGAA 60.470 50.000 0.50 0.00 0.00 3.18
1873 1897 0.038892 CACATTTGGAGCCTGCACAC 60.039 55.000 0.00 0.00 0.00 3.82
1930 1955 3.840890 TTTTGCTGTTTCGTGACTGTT 57.159 38.095 0.00 0.00 0.00 3.16
2002 2027 5.069251 AGACCACTGGTTGCTCATATACTAC 59.931 44.000 1.13 0.00 35.25 2.73
2031 2056 1.063642 GCCTTCCTTTATCAGGCCCTT 60.064 52.381 0.00 0.00 46.55 3.95
2112 2137 3.156293 TGAACCAAACCAGGATCATGTG 58.844 45.455 6.62 0.62 35.78 3.21
2388 2413 9.042450 TCTAGATTTCCTTGTTGTATGGTAAGA 57.958 33.333 0.00 0.00 0.00 2.10
2424 2449 7.861630 AGTTATTGACACACTTTGTACATGTC 58.138 34.615 16.25 16.25 39.17 3.06
3063 3401 0.819582 CCGCTGGAAAATGCCATTCT 59.180 50.000 0.00 0.00 37.30 2.40
3142 3482 3.596214 TCTGTTTCCGTATTTCCTCTGC 58.404 45.455 0.00 0.00 0.00 4.26
3167 3507 1.540267 TTTCCGCGGAAAATGTGGAT 58.460 45.000 42.69 0.00 44.90 3.41
3168 3508 1.540267 TTCCGCGGAAAATGTGGATT 58.460 45.000 37.13 0.00 44.90 3.01
3169 3509 1.540267 TCCGCGGAAAATGTGGATTT 58.460 45.000 28.99 0.00 40.93 2.17
3170 3510 1.470890 TCCGCGGAAAATGTGGATTTC 59.529 47.619 28.99 0.00 40.93 2.17
3241 3584 4.347607 CTTTCCTTCTGGTCCCATCATTT 58.652 43.478 0.00 0.00 34.23 2.32
3608 3951 6.569179 AACGACTTGCTTTAACATATGGTT 57.431 33.333 7.80 2.04 43.62 3.67
4178 4522 1.269257 GCTTGGTTCTTCACTGTTGCC 60.269 52.381 0.00 0.00 0.00 4.52
4190 4534 1.614903 ACTGTTGCCATGTGTGATTGG 59.385 47.619 0.00 0.00 36.03 3.16
4958 5310 7.361894 GCAATTATGTTTCCTGCAACAAATTT 58.638 30.769 0.00 0.00 40.07 1.82
5245 5597 7.946381 ATTCCTTTATCTCTTTCCAACCTTC 57.054 36.000 0.00 0.00 0.00 3.46
5262 5614 6.416750 CCAACCTTCGTACTTGTTTGATTTTC 59.583 38.462 0.00 0.00 0.00 2.29
5391 5743 3.531538 TCCAAACAAGCCTCGTGATATC 58.468 45.455 0.00 0.00 0.00 1.63
5457 5809 2.637521 TGCTCTTCCTGCAAGCAAG 58.362 52.632 7.55 0.47 42.71 4.01
5557 5912 4.100808 TGGAGCAACCAAACATAAAAGCTT 59.899 37.500 0.00 0.00 46.75 3.74
5558 5913 4.686091 GGAGCAACCAAACATAAAAGCTTC 59.314 41.667 0.00 0.00 38.79 3.86
5568 5923 7.860872 CCAAACATAAAAGCTTCGACTTTAGTT 59.139 33.333 0.00 5.28 38.92 2.24
5624 5979 1.655484 TGCAGAGTGTGACACTTGTG 58.345 50.000 20.42 19.65 45.44 3.33
5828 6204 7.556844 ACCCTGTATAGAATTGTCTAGTGTTG 58.443 38.462 0.00 0.00 39.75 3.33
5859 6235 5.591643 TTTACAGAAACAGCTCGTCATTC 57.408 39.130 0.00 0.00 0.00 2.67
5867 6243 1.998315 CAGCTCGTCATTCCACAAGAG 59.002 52.381 0.00 0.00 0.00 2.85
5913 6290 1.269517 TGGTTCAAACAAATCTGCCGC 60.270 47.619 0.00 0.00 0.00 6.53
5990 6370 3.363970 CGCCGCACCTGTATGATAAATTC 60.364 47.826 0.00 0.00 0.00 2.17
5995 6375 4.072131 CACCTGTATGATAAATTCGGGGG 58.928 47.826 0.00 0.00 0.00 5.40
6062 6442 5.048364 TGTTTGCGAATACTTGCAGGTTTAT 60.048 36.000 6.84 0.00 42.89 1.40
6063 6443 4.614555 TGCGAATACTTGCAGGTTTATG 57.385 40.909 6.84 0.00 35.90 1.90
6065 6445 4.457603 TGCGAATACTTGCAGGTTTATGTT 59.542 37.500 6.84 0.00 35.90 2.71
6068 6448 4.718940 ATACTTGCAGGTTTATGTTGCC 57.281 40.909 6.84 0.00 37.03 4.52
6069 6449 2.315176 ACTTGCAGGTTTATGTTGCCA 58.685 42.857 0.00 0.00 37.03 4.92
6076 6456 4.157656 GCAGGTTTATGTTGCCAGTATGAA 59.842 41.667 0.00 0.00 39.69 2.57
6082 6462 7.981225 GGTTTATGTTGCCAGTATGAAATTCAT 59.019 33.333 13.43 13.43 39.69 2.57
6094 6474 8.403236 CAGTATGAAATTCATGAAGATTGAGCA 58.597 33.333 17.93 6.68 39.69 4.26
6098 6478 9.667107 ATGAAATTCATGAAGATTGAGCAAAAT 57.333 25.926 14.54 0.00 35.43 1.82
6128 6510 2.788786 GTGGCAAAACTGACAATGAACG 59.211 45.455 0.00 0.00 0.00 3.95
6258 6643 9.057089 AGGAATTAATTGAATCCGACTAACATC 57.943 33.333 5.17 0.00 0.00 3.06
6274 6659 1.134098 ACATCGACATTGGGGATGGAC 60.134 52.381 17.85 0.00 41.37 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.749454 ATCCCTCGAACAATGGCTGC 60.749 55.000 0.00 0.00 0.00 5.25
4 5 3.279434 AGTTAATCCCTCGAACAATGGC 58.721 45.455 0.00 0.00 0.00 4.40
5 6 4.941263 TGAAGTTAATCCCTCGAACAATGG 59.059 41.667 0.00 0.00 0.00 3.16
6 7 5.065218 CCTGAAGTTAATCCCTCGAACAATG 59.935 44.000 0.00 0.00 0.00 2.82
7 8 5.045869 TCCTGAAGTTAATCCCTCGAACAAT 60.046 40.000 0.00 0.00 0.00 2.71
8 9 4.285003 TCCTGAAGTTAATCCCTCGAACAA 59.715 41.667 0.00 0.00 0.00 2.83
9 10 3.835978 TCCTGAAGTTAATCCCTCGAACA 59.164 43.478 0.00 0.00 0.00 3.18
10 11 4.159879 TCTCCTGAAGTTAATCCCTCGAAC 59.840 45.833 0.00 0.00 0.00 3.95
11 12 4.350245 TCTCCTGAAGTTAATCCCTCGAA 58.650 43.478 0.00 0.00 0.00 3.71
12 13 3.977312 TCTCCTGAAGTTAATCCCTCGA 58.023 45.455 0.00 0.00 0.00 4.04
13 14 4.946478 ATCTCCTGAAGTTAATCCCTCG 57.054 45.455 0.00 0.00 0.00 4.63
14 15 5.535406 TCGTATCTCCTGAAGTTAATCCCTC 59.465 44.000 0.00 0.00 0.00 4.30
15 16 5.455872 TCGTATCTCCTGAAGTTAATCCCT 58.544 41.667 0.00 0.00 0.00 4.20
16 17 5.302313 ACTCGTATCTCCTGAAGTTAATCCC 59.698 44.000 0.00 0.00 0.00 3.85
17 18 6.394025 ACTCGTATCTCCTGAAGTTAATCC 57.606 41.667 0.00 0.00 0.00 3.01
18 19 7.974501 TCAAACTCGTATCTCCTGAAGTTAATC 59.025 37.037 0.00 0.00 0.00 1.75
19 20 7.837863 TCAAACTCGTATCTCCTGAAGTTAAT 58.162 34.615 0.00 0.00 0.00 1.40
20 21 7.223260 TCAAACTCGTATCTCCTGAAGTTAA 57.777 36.000 0.00 0.00 0.00 2.01
21 22 6.829229 TCAAACTCGTATCTCCTGAAGTTA 57.171 37.500 0.00 0.00 0.00 2.24
22 23 5.723672 TCAAACTCGTATCTCCTGAAGTT 57.276 39.130 0.00 0.00 0.00 2.66
23 24 5.715070 CTTCAAACTCGTATCTCCTGAAGT 58.285 41.667 0.00 0.00 35.62 3.01
24 25 4.564769 GCTTCAAACTCGTATCTCCTGAAG 59.435 45.833 4.87 4.87 40.66 3.02
25 26 4.220821 AGCTTCAAACTCGTATCTCCTGAA 59.779 41.667 0.00 0.00 0.00 3.02
26 27 3.764434 AGCTTCAAACTCGTATCTCCTGA 59.236 43.478 0.00 0.00 0.00 3.86
27 28 4.116747 AGCTTCAAACTCGTATCTCCTG 57.883 45.455 0.00 0.00 0.00 3.86
28 29 4.499183 CAAGCTTCAAACTCGTATCTCCT 58.501 43.478 0.00 0.00 0.00 3.69
29 30 3.062774 GCAAGCTTCAAACTCGTATCTCC 59.937 47.826 0.00 0.00 0.00 3.71
30 31 3.062774 GGCAAGCTTCAAACTCGTATCTC 59.937 47.826 0.00 0.00 0.00 2.75
31 32 3.003480 GGCAAGCTTCAAACTCGTATCT 58.997 45.455 0.00 0.00 0.00 1.98
32 33 2.742053 TGGCAAGCTTCAAACTCGTATC 59.258 45.455 0.00 0.00 0.00 2.24
33 34 2.778299 TGGCAAGCTTCAAACTCGTAT 58.222 42.857 0.00 0.00 0.00 3.06
34 35 2.248280 TGGCAAGCTTCAAACTCGTA 57.752 45.000 0.00 0.00 0.00 3.43
35 36 1.388547 TTGGCAAGCTTCAAACTCGT 58.611 45.000 0.00 0.00 0.00 4.18
36 37 2.712057 ATTGGCAAGCTTCAAACTCG 57.288 45.000 5.96 0.00 0.00 4.18
37 38 4.386954 GCTAAATTGGCAAGCTTCAAACTC 59.613 41.667 5.96 0.00 33.40 3.01
38 39 4.309933 GCTAAATTGGCAAGCTTCAAACT 58.690 39.130 5.96 0.00 33.40 2.66
39 40 3.433274 GGCTAAATTGGCAAGCTTCAAAC 59.567 43.478 5.96 0.00 36.48 2.93
40 41 3.070734 TGGCTAAATTGGCAAGCTTCAAA 59.929 39.130 5.96 0.00 39.58 2.69
41 42 2.632028 TGGCTAAATTGGCAAGCTTCAA 59.368 40.909 5.96 0.00 39.58 2.69
42 43 2.246469 TGGCTAAATTGGCAAGCTTCA 58.754 42.857 5.96 0.00 39.58 3.02
43 44 3.119029 TCATGGCTAAATTGGCAAGCTTC 60.119 43.478 5.96 0.00 45.43 3.86
44 45 2.833338 TCATGGCTAAATTGGCAAGCTT 59.167 40.909 5.96 4.35 45.43 3.74
45 46 2.429610 CTCATGGCTAAATTGGCAAGCT 59.570 45.455 5.96 0.00 45.43 3.74
46 47 2.428171 TCTCATGGCTAAATTGGCAAGC 59.572 45.455 5.96 2.83 45.43 4.01
47 48 3.698040 ACTCTCATGGCTAAATTGGCAAG 59.302 43.478 5.96 0.00 45.43 4.01
48 49 3.700538 ACTCTCATGGCTAAATTGGCAA 58.299 40.909 0.68 0.68 45.43 4.52
49 50 3.370840 ACTCTCATGGCTAAATTGGCA 57.629 42.857 3.31 0.00 46.31 4.92
50 51 4.708177 TCTACTCTCATGGCTAAATTGGC 58.292 43.478 0.00 0.00 0.00 4.52
51 52 6.599244 TGTTTCTACTCTCATGGCTAAATTGG 59.401 38.462 0.00 0.00 0.00 3.16
52 53 7.615582 TGTTTCTACTCTCATGGCTAAATTG 57.384 36.000 0.00 0.00 0.00 2.32
53 54 8.814038 ATTGTTTCTACTCTCATGGCTAAATT 57.186 30.769 0.00 0.00 0.00 1.82
54 55 9.905713 TTATTGTTTCTACTCTCATGGCTAAAT 57.094 29.630 0.00 0.00 0.00 1.40
55 56 9.905713 ATTATTGTTTCTACTCTCATGGCTAAA 57.094 29.630 0.00 0.00 0.00 1.85
56 57 9.905713 AATTATTGTTTCTACTCTCATGGCTAA 57.094 29.630 0.00 0.00 0.00 3.09
57 58 9.905713 AAATTATTGTTTCTACTCTCATGGCTA 57.094 29.630 0.00 0.00 0.00 3.93
58 59 8.814038 AAATTATTGTTTCTACTCTCATGGCT 57.186 30.769 0.00 0.00 0.00 4.75
59 60 9.294030 CAAAATTATTGTTTCTACTCTCATGGC 57.706 33.333 0.00 0.00 0.00 4.40
64 65 9.561270 GGCTTCAAAATTATTGTTTCTACTCTC 57.439 33.333 0.00 0.00 0.00 3.20
65 66 8.523658 GGGCTTCAAAATTATTGTTTCTACTCT 58.476 33.333 0.00 0.00 0.00 3.24
66 67 8.303876 TGGGCTTCAAAATTATTGTTTCTACTC 58.696 33.333 0.00 0.00 0.00 2.59
67 68 8.088365 GTGGGCTTCAAAATTATTGTTTCTACT 58.912 33.333 0.00 0.00 0.00 2.57
68 69 8.088365 AGTGGGCTTCAAAATTATTGTTTCTAC 58.912 33.333 0.00 0.00 0.00 2.59
69 70 8.189119 AGTGGGCTTCAAAATTATTGTTTCTA 57.811 30.769 0.00 0.00 0.00 2.10
70 71 7.066307 AGTGGGCTTCAAAATTATTGTTTCT 57.934 32.000 0.00 0.00 0.00 2.52
71 72 9.087424 GATAGTGGGCTTCAAAATTATTGTTTC 57.913 33.333 0.00 0.00 0.00 2.78
72 73 8.815912 AGATAGTGGGCTTCAAAATTATTGTTT 58.184 29.630 0.00 0.00 0.00 2.83
73 74 8.366359 AGATAGTGGGCTTCAAAATTATTGTT 57.634 30.769 0.00 0.00 0.00 2.83
74 75 7.961326 AGATAGTGGGCTTCAAAATTATTGT 57.039 32.000 0.00 0.00 0.00 2.71
75 76 8.078596 GCTAGATAGTGGGCTTCAAAATTATTG 58.921 37.037 0.00 0.00 0.00 1.90
76 77 8.001292 AGCTAGATAGTGGGCTTCAAAATTATT 58.999 33.333 0.00 0.00 0.00 1.40
77 78 7.521669 AGCTAGATAGTGGGCTTCAAAATTAT 58.478 34.615 0.00 0.00 0.00 1.28
78 79 6.900194 AGCTAGATAGTGGGCTTCAAAATTA 58.100 36.000 0.00 0.00 0.00 1.40
79 80 5.760131 AGCTAGATAGTGGGCTTCAAAATT 58.240 37.500 0.00 0.00 0.00 1.82
80 81 5.379706 AGCTAGATAGTGGGCTTCAAAAT 57.620 39.130 0.00 0.00 0.00 1.82
81 82 4.844349 AGCTAGATAGTGGGCTTCAAAA 57.156 40.909 0.00 0.00 0.00 2.44
82 83 5.425539 AGTTAGCTAGATAGTGGGCTTCAAA 59.574 40.000 0.00 0.00 36.40 2.69
83 84 4.962995 AGTTAGCTAGATAGTGGGCTTCAA 59.037 41.667 0.00 0.00 36.40 2.69
84 85 4.547671 AGTTAGCTAGATAGTGGGCTTCA 58.452 43.478 0.00 0.00 36.40 3.02
85 86 5.538849 AAGTTAGCTAGATAGTGGGCTTC 57.461 43.478 0.00 0.00 36.40 3.86
86 87 5.959583 AAAGTTAGCTAGATAGTGGGCTT 57.040 39.130 0.00 0.00 36.40 4.35
87 88 5.663556 AGAAAAGTTAGCTAGATAGTGGGCT 59.336 40.000 0.00 0.00 38.62 5.19
88 89 5.919755 AGAAAAGTTAGCTAGATAGTGGGC 58.080 41.667 0.00 0.00 0.00 5.36
89 90 6.183360 ACGAGAAAAGTTAGCTAGATAGTGGG 60.183 42.308 0.00 0.00 0.00 4.61
90 91 6.797454 ACGAGAAAAGTTAGCTAGATAGTGG 58.203 40.000 0.00 0.00 0.00 4.00
91 92 8.185505 AGAACGAGAAAAGTTAGCTAGATAGTG 58.814 37.037 0.00 0.00 31.14 2.74
92 93 8.283699 AGAACGAGAAAAGTTAGCTAGATAGT 57.716 34.615 0.00 0.00 31.14 2.12
93 94 7.584847 CGAGAACGAGAAAAGTTAGCTAGATAG 59.415 40.741 0.00 0.00 42.66 2.08
94 95 7.065563 ACGAGAACGAGAAAAGTTAGCTAGATA 59.934 37.037 0.00 0.00 42.66 1.98
95 96 6.127952 ACGAGAACGAGAAAAGTTAGCTAGAT 60.128 38.462 0.00 0.00 42.66 1.98
96 97 5.180868 ACGAGAACGAGAAAAGTTAGCTAGA 59.819 40.000 0.00 0.00 42.66 2.43
97 98 5.284188 CACGAGAACGAGAAAAGTTAGCTAG 59.716 44.000 0.00 0.00 42.66 3.42
98 99 5.152097 CACGAGAACGAGAAAAGTTAGCTA 58.848 41.667 0.00 0.00 42.66 3.32
99 100 3.982058 CACGAGAACGAGAAAAGTTAGCT 59.018 43.478 0.00 0.00 42.66 3.32
100 101 3.121445 CCACGAGAACGAGAAAAGTTAGC 59.879 47.826 0.00 0.00 42.66 3.09
101 102 3.673809 CCCACGAGAACGAGAAAAGTTAG 59.326 47.826 0.00 0.00 42.66 2.34
102 103 3.068590 ACCCACGAGAACGAGAAAAGTTA 59.931 43.478 0.00 0.00 42.66 2.24
103 104 2.159000 ACCCACGAGAACGAGAAAAGTT 60.159 45.455 0.00 0.00 42.66 2.66
104 105 1.411612 ACCCACGAGAACGAGAAAAGT 59.588 47.619 0.00 0.00 42.66 2.66
105 106 2.150397 ACCCACGAGAACGAGAAAAG 57.850 50.000 0.00 0.00 42.66 2.27
106 107 2.029649 CCTACCCACGAGAACGAGAAAA 60.030 50.000 0.00 0.00 42.66 2.29
107 108 1.542915 CCTACCCACGAGAACGAGAAA 59.457 52.381 0.00 0.00 42.66 2.52
108 109 1.171308 CCTACCCACGAGAACGAGAA 58.829 55.000 0.00 0.00 42.66 2.87
109 110 0.325933 TCCTACCCACGAGAACGAGA 59.674 55.000 0.00 0.00 42.66 4.04
110 111 0.450983 GTCCTACCCACGAGAACGAG 59.549 60.000 0.00 0.00 42.66 4.18
111 112 1.300971 CGTCCTACCCACGAGAACGA 61.301 60.000 0.00 0.00 42.66 3.85
112 113 1.136147 CGTCCTACCCACGAGAACG 59.864 63.158 0.00 0.00 39.75 3.95
113 114 1.153881 GCGTCCTACCCACGAGAAC 60.154 63.158 0.00 0.00 39.75 3.01
114 115 2.345760 GGCGTCCTACCCACGAGAA 61.346 63.158 0.00 0.00 39.75 2.87
115 116 2.753043 GGCGTCCTACCCACGAGA 60.753 66.667 0.00 0.00 39.75 4.04
116 117 1.105167 TATGGCGTCCTACCCACGAG 61.105 60.000 0.00 0.00 39.75 4.18
117 118 0.468585 ATATGGCGTCCTACCCACGA 60.469 55.000 0.00 0.00 39.75 4.35
118 119 0.391597 AATATGGCGTCCTACCCACG 59.608 55.000 0.00 0.00 40.35 4.94
119 120 2.218603 CAAATATGGCGTCCTACCCAC 58.781 52.381 0.00 0.00 33.17 4.61
120 121 1.142060 CCAAATATGGCGTCCTACCCA 59.858 52.381 0.00 0.00 40.58 4.51
121 122 1.892209 CCAAATATGGCGTCCTACCC 58.108 55.000 0.00 0.00 40.58 3.69
131 132 4.082125 GGGGAGTATCAAGCCAAATATGG 58.918 47.826 0.00 0.00 43.91 2.74
132 133 4.728772 TGGGGAGTATCAAGCCAAATATG 58.271 43.478 0.00 0.00 36.25 1.78
133 134 5.327732 CATGGGGAGTATCAAGCCAAATAT 58.672 41.667 0.00 0.00 36.25 1.28
134 135 4.728772 CATGGGGAGTATCAAGCCAAATA 58.271 43.478 0.00 0.00 36.25 1.40
135 136 3.569491 CATGGGGAGTATCAAGCCAAAT 58.431 45.455 0.00 0.00 36.25 2.32
136 137 2.949963 GCATGGGGAGTATCAAGCCAAA 60.950 50.000 0.00 0.00 36.25 3.28
137 138 1.410083 GCATGGGGAGTATCAAGCCAA 60.410 52.381 0.00 0.00 36.25 4.52
138 139 0.183492 GCATGGGGAGTATCAAGCCA 59.817 55.000 0.00 0.00 36.25 4.75
139 140 0.538287 GGCATGGGGAGTATCAAGCC 60.538 60.000 0.00 0.00 39.91 4.35
140 141 0.183492 TGGCATGGGGAGTATCAAGC 59.817 55.000 0.00 0.00 36.25 4.01
141 142 2.965671 ATGGCATGGGGAGTATCAAG 57.034 50.000 0.00 0.00 36.25 3.02
142 143 3.298619 CAAATGGCATGGGGAGTATCAA 58.701 45.455 0.00 0.00 36.25 2.57
143 144 2.244510 ACAAATGGCATGGGGAGTATCA 59.755 45.455 0.00 0.00 36.25 2.15
144 145 2.949447 ACAAATGGCATGGGGAGTATC 58.051 47.619 0.00 0.00 0.00 2.24
145 146 4.473444 CTTACAAATGGCATGGGGAGTAT 58.527 43.478 0.00 0.00 0.00 2.12
146 147 3.372566 CCTTACAAATGGCATGGGGAGTA 60.373 47.826 0.00 0.00 0.00 2.59
147 148 2.624029 CCTTACAAATGGCATGGGGAGT 60.624 50.000 0.00 0.00 0.00 3.85
148 149 2.034124 CCTTACAAATGGCATGGGGAG 58.966 52.381 0.00 0.00 0.00 4.30
149 150 1.342874 CCCTTACAAATGGCATGGGGA 60.343 52.381 0.00 0.00 34.94 4.81
150 151 1.122227 CCCTTACAAATGGCATGGGG 58.878 55.000 0.00 2.82 0.00 4.96
151 152 1.756538 GTCCCTTACAAATGGCATGGG 59.243 52.381 11.18 11.18 34.76 4.00
152 153 2.455557 TGTCCCTTACAAATGGCATGG 58.544 47.619 0.00 0.00 34.29 3.66
162 163 6.459923 GGTAAAAATGCAATTGTCCCTTACA 58.540 36.000 7.40 0.00 36.10 2.41
163 164 5.872617 GGGTAAAAATGCAATTGTCCCTTAC 59.127 40.000 7.40 8.63 36.10 2.34
164 165 5.046231 GGGGTAAAAATGCAATTGTCCCTTA 60.046 40.000 16.31 0.00 36.10 2.69
210 211 3.634910 AGCTCGAAAAGTAAGGGCAAAAA 59.365 39.130 0.00 0.00 0.00 1.94
244 245 2.028748 CCTCGACGGAAAAAGTAAGGGA 60.029 50.000 0.00 0.00 33.16 4.20
262 263 1.627297 AAGGGCATTCGAGGGACCTC 61.627 60.000 12.69 8.33 39.55 3.85
263 264 1.208165 AAAGGGCATTCGAGGGACCT 61.208 55.000 6.97 6.97 0.00 3.85
398 399 1.757682 AACGGTGCTTTTGTCCTGAA 58.242 45.000 0.00 0.00 0.00 3.02
413 414 2.749280 ACCTCGGGTAGTTTAAACGG 57.251 50.000 12.54 8.39 32.11 4.44
415 416 9.166173 ACATTAATTACCTCGGGTAGTTTAAAC 57.834 33.333 10.47 10.47 39.52 2.01
490 491 9.664332 TGCCTACATTTGCATGTAATTTTTATT 57.336 25.926 0.00 0.00 43.89 1.40
491 492 9.664332 TTGCCTACATTTGCATGTAATTTTTAT 57.336 25.926 0.00 0.00 43.89 1.40
495 496 8.564509 AAATTGCCTACATTTGCATGTAATTT 57.435 26.923 0.00 4.40 43.89 1.82
498 499 9.664332 ATTTAAATTGCCTACATTTGCATGTAA 57.336 25.926 2.03 0.00 43.89 2.41
499 500 9.096160 CATTTAAATTGCCTACATTTGCATGTA 57.904 29.630 0.00 0.48 42.24 2.29
500 501 7.066043 CCATTTAAATTGCCTACATTTGCATGT 59.934 33.333 0.00 0.00 46.07 3.21
501 502 7.066043 ACCATTTAAATTGCCTACATTTGCATG 59.934 33.333 0.00 0.00 37.33 4.06
503 504 6.370994 CACCATTTAAATTGCCTACATTTGCA 59.629 34.615 0.00 0.00 35.27 4.08
504 505 6.675244 GCACCATTTAAATTGCCTACATTTGC 60.675 38.462 12.08 3.49 0.00 3.68
505 506 6.594937 AGCACCATTTAAATTGCCTACATTTG 59.405 34.615 17.35 1.20 35.47 2.32
507 508 6.298441 AGCACCATTTAAATTGCCTACATT 57.702 33.333 17.35 0.45 35.47 2.71
508 509 5.937975 AGCACCATTTAAATTGCCTACAT 57.062 34.783 17.35 1.03 35.47 2.29
510 511 6.426633 ACAAAAGCACCATTTAAATTGCCTAC 59.573 34.615 17.35 0.00 35.47 3.18
511 512 6.529220 ACAAAAGCACCATTTAAATTGCCTA 58.471 32.000 17.35 0.00 35.47 3.93
512 513 5.375773 ACAAAAGCACCATTTAAATTGCCT 58.624 33.333 17.35 5.87 35.47 4.75
514 515 5.469760 AGGACAAAAGCACCATTTAAATTGC 59.530 36.000 14.41 14.41 35.08 3.56
515 516 6.705381 TCAGGACAAAAGCACCATTTAAATTG 59.295 34.615 0.00 0.00 0.00 2.32
516 517 6.825610 TCAGGACAAAAGCACCATTTAAATT 58.174 32.000 0.00 0.00 0.00 1.82
517 518 6.418057 TCAGGACAAAAGCACCATTTAAAT 57.582 33.333 0.00 0.00 0.00 1.40
524 525 1.340889 GCATTCAGGACAAAAGCACCA 59.659 47.619 0.00 0.00 0.00 4.17
552 553 8.584157 TCAGAAAAACATTACCTTTATGTGCAT 58.416 29.630 0.00 0.00 36.41 3.96
640 641 3.443976 CCTTTGACCGTTTGACCAAAAG 58.556 45.455 0.00 0.00 31.33 2.27
708 709 3.002965 CGTTTTGCCCTTACTTTTCGAGT 59.997 43.478 0.00 0.00 42.55 4.18
730 731 0.609662 TAGTTGGTTCCTACCCACGC 59.390 55.000 0.30 0.00 43.20 5.34
766 767 6.074648 TCATGGGATAATTACAAATGGGGAC 58.925 40.000 0.00 0.00 0.00 4.46
767 768 6.286712 TCATGGGATAATTACAAATGGGGA 57.713 37.500 0.00 0.00 0.00 4.81
768 769 6.326064 TGTTCATGGGATAATTACAAATGGGG 59.674 38.462 0.00 0.00 0.00 4.96
769 770 7.069826 ACTGTTCATGGGATAATTACAAATGGG 59.930 37.037 0.00 0.00 0.00 4.00
770 771 7.922278 CACTGTTCATGGGATAATTACAAATGG 59.078 37.037 0.00 0.00 0.00 3.16
771 772 8.685427 TCACTGTTCATGGGATAATTACAAATG 58.315 33.333 0.00 0.00 0.00 2.32
772 773 8.821686 TCACTGTTCATGGGATAATTACAAAT 57.178 30.769 0.00 0.00 0.00 2.32
773 774 8.642935 TTCACTGTTCATGGGATAATTACAAA 57.357 30.769 0.00 0.00 0.00 2.83
774 775 8.821686 ATTCACTGTTCATGGGATAATTACAA 57.178 30.769 0.00 0.00 0.00 2.41
775 776 9.913310 TTATTCACTGTTCATGGGATAATTACA 57.087 29.630 0.00 0.00 0.00 2.41
778 779 9.699410 TCTTTATTCACTGTTCATGGGATAATT 57.301 29.630 0.00 0.00 0.00 1.40
779 780 9.347240 CTCTTTATTCACTGTTCATGGGATAAT 57.653 33.333 0.00 0.00 0.00 1.28
780 781 7.775093 CCTCTTTATTCACTGTTCATGGGATAA 59.225 37.037 0.00 0.00 0.00 1.75
781 782 7.127186 TCCTCTTTATTCACTGTTCATGGGATA 59.873 37.037 0.00 0.00 0.00 2.59
782 783 6.069440 TCCTCTTTATTCACTGTTCATGGGAT 60.069 38.462 0.00 0.00 0.00 3.85
783 784 5.250543 TCCTCTTTATTCACTGTTCATGGGA 59.749 40.000 0.00 0.00 0.00 4.37
784 785 5.500234 TCCTCTTTATTCACTGTTCATGGG 58.500 41.667 0.00 0.00 0.00 4.00
785 786 6.093219 CACTCCTCTTTATTCACTGTTCATGG 59.907 42.308 0.00 0.00 0.00 3.66
786 787 6.093219 CCACTCCTCTTTATTCACTGTTCATG 59.907 42.308 0.00 0.00 0.00 3.07
787 788 6.176183 CCACTCCTCTTTATTCACTGTTCAT 58.824 40.000 0.00 0.00 0.00 2.57
788 789 5.513094 CCCACTCCTCTTTATTCACTGTTCA 60.513 44.000 0.00 0.00 0.00 3.18
789 790 4.938226 CCCACTCCTCTTTATTCACTGTTC 59.062 45.833 0.00 0.00 0.00 3.18
790 791 4.597507 TCCCACTCCTCTTTATTCACTGTT 59.402 41.667 0.00 0.00 0.00 3.16
791 792 4.168101 TCCCACTCCTCTTTATTCACTGT 58.832 43.478 0.00 0.00 0.00 3.55
792 793 4.826274 TCCCACTCCTCTTTATTCACTG 57.174 45.455 0.00 0.00 0.00 3.66
793 794 6.394345 AAATCCCACTCCTCTTTATTCACT 57.606 37.500 0.00 0.00 0.00 3.41
794 795 7.394641 AGAAAAATCCCACTCCTCTTTATTCAC 59.605 37.037 0.00 0.00 0.00 3.18
795 796 7.470192 AGAAAAATCCCACTCCTCTTTATTCA 58.530 34.615 0.00 0.00 0.00 2.57
796 797 7.946381 AGAAAAATCCCACTCCTCTTTATTC 57.054 36.000 0.00 0.00 0.00 1.75
797 798 9.822727 TTTAGAAAAATCCCACTCCTCTTTATT 57.177 29.630 0.00 0.00 0.00 1.40
798 799 9.822727 TTTTAGAAAAATCCCACTCCTCTTTAT 57.177 29.630 0.00 0.00 0.00 1.40
799 800 9.822727 ATTTTAGAAAAATCCCACTCCTCTTTA 57.177 29.630 0.00 0.00 0.00 1.85
800 801 8.727100 ATTTTAGAAAAATCCCACTCCTCTTT 57.273 30.769 0.00 0.00 0.00 2.52
801 802 9.822727 TTATTTTAGAAAAATCCCACTCCTCTT 57.177 29.630 1.10 0.00 0.00 2.85
802 803 9.822727 TTTATTTTAGAAAAATCCCACTCCTCT 57.177 29.630 1.10 0.00 0.00 3.69
831 832 2.672908 GGGATTTTCGGGGGTCGT 59.327 61.111 0.00 0.00 40.32 4.34
832 833 2.124445 GGGGATTTTCGGGGGTCG 60.124 66.667 0.00 0.00 40.90 4.79
839 840 1.131693 GGCGTAGTTTGGGGATTTTCG 59.868 52.381 0.00 0.00 0.00 3.46
1047 1054 3.069980 GATGGAGCGCACGAGGTCT 62.070 63.158 11.47 0.00 38.56 3.85
1184 1191 0.972883 GAGAAGATGCTAGCCCCGAT 59.027 55.000 13.29 0.00 0.00 4.18
1209 1216 1.382629 CCAACTCCCGTCCCCAATT 59.617 57.895 0.00 0.00 0.00 2.32
1212 1219 3.572715 ATCCCAACTCCCGTCCCCA 62.573 63.158 0.00 0.00 0.00 4.96
1218 1225 1.000896 AAGGCAATCCCAACTCCCG 60.001 57.895 0.00 0.00 35.39 5.14
1259 1266 3.943381 TGAAGCACTGGCATTAAGATCTG 59.057 43.478 0.00 0.00 44.61 2.90
1286 1293 6.348213 GCCAGTAAACATTCGTCAACTACAAT 60.348 38.462 0.00 0.00 0.00 2.71
1379 1386 1.468520 CACTGGCAATTACGGTTCCTG 59.531 52.381 0.00 0.00 0.00 3.86
1536 1560 1.922447 ACCCTGACATGGATGCCTTTA 59.078 47.619 3.49 0.00 0.00 1.85
1701 1725 1.683385 GCCAATTCCAGCATAACCCTC 59.317 52.381 0.00 0.00 0.00 4.30
1772 1796 3.638160 ACGTTTGGAGGTACAAGTAGTGA 59.362 43.478 0.00 0.00 0.00 3.41
1852 1876 1.228644 TGCAGGCTCCAAATGTGCT 60.229 52.632 0.00 0.00 35.11 4.40
1915 1940 2.415168 ACACACAACAGTCACGAAACAG 59.585 45.455 0.00 0.00 0.00 3.16
1966 1991 2.420547 CCAGTGGTCTGTATCCATGGTG 60.421 54.545 12.58 0.00 39.82 4.17
2031 2056 9.897744 GTGAATATGTTTTTCTCAACATCTTCA 57.102 29.630 16.98 16.98 46.92 3.02
2112 2137 6.036470 GCAAATTTCAAGGGCTATCTGTAAC 58.964 40.000 0.00 0.00 0.00 2.50
2260 2285 2.293170 GCAAGATCCTTTCTACCCTGC 58.707 52.381 0.00 0.00 33.05 4.85
2388 2413 5.867716 GTGTGTCAATAACTCGACAATAGGT 59.132 40.000 0.00 0.00 43.40 3.08
3167 3507 2.099405 GGGATGAAAATGGAGCGGAAA 58.901 47.619 0.00 0.00 0.00 3.13
3168 3508 1.284785 AGGGATGAAAATGGAGCGGAA 59.715 47.619 0.00 0.00 0.00 4.30
3169 3509 0.918983 AGGGATGAAAATGGAGCGGA 59.081 50.000 0.00 0.00 0.00 5.54
3170 3510 2.222027 GTAGGGATGAAAATGGAGCGG 58.778 52.381 0.00 0.00 0.00 5.52
3171 3511 2.158755 AGGTAGGGATGAAAATGGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
3268 3611 4.768968 ACTAGCAGAAGTTCATGGCAAAAT 59.231 37.500 5.50 0.00 0.00 1.82
3416 3759 7.216881 CACAACATAGTTAATCAATCAAGCACG 59.783 37.037 0.00 0.00 0.00 5.34
3608 3951 0.107643 TCAAGGCACACATGTCGGAA 59.892 50.000 0.00 0.00 34.75 4.30
4178 4522 5.672570 GCAAAAATCATGCCAATCACACATG 60.673 40.000 0.00 0.00 42.01 3.21
4958 5310 3.118408 AGCCTGACACTCAAACAGTACAA 60.118 43.478 0.00 0.00 32.21 2.41
5262 5614 9.086336 CCAACCATAACTACTTGCAAAATTATG 57.914 33.333 16.95 16.95 32.34 1.90
5269 5621 4.720046 TGACCAACCATAACTACTTGCAA 58.280 39.130 0.00 0.00 0.00 4.08
5457 5809 5.360649 AAGCTGGAAGTAGAGAATTACCC 57.639 43.478 0.00 0.00 35.30 3.69
5495 5847 2.698855 AGTCAGAGCACACAAACTGT 57.301 45.000 0.00 0.00 0.00 3.55
5499 5851 3.192541 TGCTTAGTCAGAGCACACAAA 57.807 42.857 0.00 0.00 44.63 2.83
5557 5912 5.740290 ATCCTCCTGAAAACTAAAGTCGA 57.260 39.130 0.00 0.00 0.00 4.20
5558 5913 5.351740 GGAATCCTCCTGAAAACTAAAGTCG 59.648 44.000 0.00 0.00 38.88 4.18
5624 5979 3.451178 TCACCTAGTAAGAGGAATGCACC 59.549 47.826 0.00 0.00 39.15 5.01
5706 6061 5.827756 TCTTGAGGGTCTATACTGACAAGA 58.172 41.667 0.00 0.00 38.61 3.02
5828 6204 8.818057 ACGAGCTGTTTCTGTAAATATGATAAC 58.182 33.333 0.00 0.00 0.00 1.89
5852 6228 2.349590 TCATGCTCTTGTGGAATGACG 58.650 47.619 0.00 0.00 0.00 4.35
5859 6235 2.876091 CAATGCTTCATGCTCTTGTGG 58.124 47.619 0.00 0.00 43.37 4.17
5867 6243 3.362581 ATGCAGCAATGCTTCATGC 57.637 47.368 18.81 14.15 40.59 4.06
5981 6360 2.516227 TGTTGCCCCCGAATTTATCA 57.484 45.000 0.00 0.00 0.00 2.15
5990 6370 3.451894 GGCTTCATGTTGCCCCCG 61.452 66.667 16.94 0.00 43.11 5.73
5995 6375 3.515330 AAATGCTAGGCTTCATGTTGC 57.485 42.857 0.00 0.00 0.00 4.17
6062 6442 6.433716 TCTTCATGAATTTCATACTGGCAACA 59.566 34.615 8.96 0.00 38.91 3.33
6063 6443 6.855836 TCTTCATGAATTTCATACTGGCAAC 58.144 36.000 8.96 0.00 34.28 4.17
6065 6445 7.339976 TCAATCTTCATGAATTTCATACTGGCA 59.660 33.333 8.96 0.00 34.28 4.92
6068 6448 8.403236 TGCTCAATCTTCATGAATTTCATACTG 58.597 33.333 8.96 2.19 34.28 2.74
6069 6449 8.515695 TGCTCAATCTTCATGAATTTCATACT 57.484 30.769 8.96 0.00 34.28 2.12
6094 6474 9.040939 GTCAGTTTTGCCACATTTACTTATTTT 57.959 29.630 0.00 0.00 0.00 1.82
6098 6478 6.701145 TGTCAGTTTTGCCACATTTACTTA 57.299 33.333 0.00 0.00 0.00 2.24
6128 6510 7.659390 AGATTACAAAGAGAAGCATATGTAGCC 59.341 37.037 4.29 0.00 0.00 3.93
6258 6643 1.523711 CCGTCCATCCCCAATGTCG 60.524 63.158 0.00 0.00 33.13 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.