Multiple sequence alignment - TraesCS2D01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G142200 chr2D 100.000 2858 0 0 1 2858 83834659 83831802 0.000000e+00 5278.0
1 TraesCS2D01G142200 chr2D 88.052 385 21 6 1020 1385 83824833 83824455 1.570000e-117 433.0
2 TraesCS2D01G142200 chr2D 85.306 245 30 4 93 335 378729165 378729405 6.110000e-62 248.0
3 TraesCS2D01G142200 chr2A 85.093 1288 91 46 909 2143 84586984 84585745 0.000000e+00 1221.0
4 TraesCS2D01G142200 chr2A 89.077 531 56 2 2139 2669 84558338 84557810 0.000000e+00 658.0
5 TraesCS2D01G142200 chr2A 89.239 381 20 6 1020 1385 84555166 84554792 9.330000e-125 457.0
6 TraesCS2D01G142200 chr2A 74.032 801 150 40 1885 2666 117750336 117751097 1.010000e-69 274.0
7 TraesCS2D01G142200 chr2A 90.608 181 15 2 2666 2846 84557782 84557604 3.680000e-59 239.0
8 TraesCS2D01G142200 chr2A 75.510 392 79 12 2284 2667 766472106 766471724 2.930000e-40 176.0
9 TraesCS2D01G142200 chr2A 74.207 473 90 25 2412 2858 691186523 691186057 4.900000e-38 169.0
10 TraesCS2D01G142200 chr2A 81.679 131 21 3 2728 2858 709582038 709581911 3.890000e-19 106.0
11 TraesCS2D01G142200 chr2B 86.020 980 99 15 1701 2666 135697518 135696563 0.000000e+00 1016.0
12 TraesCS2D01G142200 chr2B 92.608 487 24 7 908 1384 135698058 135697574 0.000000e+00 689.0
13 TraesCS2D01G142200 chr2B 91.515 495 22 6 3 478 135698542 135698049 0.000000e+00 664.0
14 TraesCS2D01G142200 chr2B 89.559 431 36 5 479 907 36493410 36493833 3.240000e-149 538.0
15 TraesCS2D01G142200 chr2B 89.628 376 22 8 1020 1385 135694334 135693966 2.010000e-126 462.0
16 TraesCS2D01G142200 chr2B 77.128 188 37 6 2666 2852 654323326 654323508 1.400000e-18 104.0
17 TraesCS2D01G142200 chr2B 100.000 51 0 0 1371 1421 135697564 135697514 8.430000e-16 95.3
18 TraesCS2D01G142200 chr7D 97.471 435 9 2 475 908 507243269 507242836 0.000000e+00 741.0
19 TraesCS2D01G142200 chr7D 88.787 437 43 6 476 907 396130858 396130423 5.420000e-147 531.0
20 TraesCS2D01G142200 chr7D 75.594 631 119 25 2060 2669 127648065 127648681 2.170000e-71 279.0
21 TraesCS2D01G142200 chr7D 85.366 246 29 5 93 335 54150877 54151118 6.110000e-62 248.0
22 TraesCS2D01G142200 chr7D 85.425 247 26 8 93 336 624785644 624785405 6.110000e-62 248.0
23 TraesCS2D01G142200 chr3D 97.685 432 9 1 478 908 396602708 396602277 0.000000e+00 741.0
24 TraesCS2D01G142200 chr3D 94.872 429 18 4 476 901 2128709 2129136 0.000000e+00 667.0
25 TraesCS2D01G142200 chr3D 88.571 245 24 2 92 335 236628801 236629042 7.740000e-76 294.0
26 TraesCS2D01G142200 chr3D 86.066 244 29 3 93 335 251409156 251409395 1.020000e-64 257.0
27 TraesCS2D01G142200 chr3A 90.000 430 40 3 475 902 38635168 38635596 1.160000e-153 553.0
28 TraesCS2D01G142200 chr3A 89.767 430 41 3 475 902 38625502 38625930 5.380000e-152 547.0
29 TraesCS2D01G142200 chr5A 89.877 405 38 3 482 883 670515402 670515806 4.220000e-143 518.0
30 TraesCS2D01G142200 chr5A 76.131 796 146 27 2060 2835 593461024 593461795 7.470000e-101 377.0
31 TraesCS2D01G142200 chr5A 76.316 722 141 19 1939 2646 393601170 393601875 2.710000e-95 359.0
32 TraesCS2D01G142200 chr5A 74.102 529 105 19 1916 2430 329986125 329986635 3.760000e-44 189.0
33 TraesCS2D01G142200 chr5A 82.877 146 17 6 1885 2022 340159139 340159284 1.080000e-24 124.0
34 TraesCS2D01G142200 chr5A 92.683 41 3 0 1982 2022 623527209 623527249 3.080000e-05 60.2
35 TraesCS2D01G142200 chr5B 88.318 428 44 5 479 903 630408671 630408247 2.540000e-140 508.0
36 TraesCS2D01G142200 chr5B 80.684 673 95 19 1897 2558 74986243 74986891 9.200000e-135 490.0
37 TraesCS2D01G142200 chr6A 79.902 612 108 11 2060 2666 421197756 421197155 4.370000e-118 435.0
38 TraesCS2D01G142200 chr6B 87.427 342 23 9 1050 1375 658275955 658276292 2.690000e-100 375.0
39 TraesCS2D01G142200 chr6B 87.234 329 22 9 1079 1392 658291323 658291646 9.740000e-95 357.0
40 TraesCS2D01G142200 chr6B 75.402 622 113 25 2060 2664 719949358 719949956 6.070000e-67 265.0
41 TraesCS2D01G142200 chr6D 93.145 248 16 1 1128 1374 435300447 435300694 2.090000e-96 363.0
42 TraesCS2D01G142200 chr6D 85.075 134 14 3 1895 2022 62432493 62432626 6.430000e-27 132.0
43 TraesCS2D01G142200 chr1A 89.630 270 22 3 1102 1365 15348413 15348144 3.530000e-89 339.0
44 TraesCS2D01G142200 chr1A 79.412 170 26 6 1860 2022 529315105 529315272 8.370000e-21 111.0
45 TraesCS2D01G142200 chr3B 76.059 614 124 19 2060 2665 362049520 362048922 5.990000e-77 298.0
46 TraesCS2D01G142200 chr3B 88.163 245 25 2 92 335 353997184 353997425 3.600000e-74 289.0
47 TraesCS2D01G142200 chr3B 87.500 56 6 1 2803 2858 177970315 177970261 2.380000e-06 63.9
48 TraesCS2D01G142200 chr5D 78.166 458 81 8 2060 2504 230425452 230425001 1.010000e-69 274.0
49 TraesCS2D01G142200 chr5D 75.666 563 104 24 2062 2600 402948943 402949496 1.700000e-62 250.0
50 TraesCS2D01G142200 chr7B 86.000 250 25 6 90 335 7711093 7711336 2.820000e-65 259.0
51 TraesCS2D01G142200 chr7A 85.366 246 31 3 92 336 427281585 427281344 1.700000e-62 250.0
52 TraesCS2D01G142200 chr4A 85.075 134 14 4 1895 2022 668283457 668283590 6.430000e-27 132.0
53 TraesCS2D01G142200 chr4D 83.846 130 15 5 1899 2022 367948834 367948963 5.000000e-23 119.0
54 TraesCS2D01G142200 chr1B 80.916 131 14 8 1900 2022 619633100 619632973 3.030000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G142200 chr2D 83831802 83834659 2857 True 5278.000000 5278 100.000000 1 2858 1 chr2D.!!$R2 2857
1 TraesCS2D01G142200 chr2A 84585745 84586984 1239 True 1221.000000 1221 85.093000 909 2143 1 chr2A.!!$R1 1234
2 TraesCS2D01G142200 chr2A 84554792 84558338 3546 True 451.333333 658 89.641333 1020 2846 3 chr2A.!!$R5 1826
3 TraesCS2D01G142200 chr2A 117750336 117751097 761 False 274.000000 274 74.032000 1885 2666 1 chr2A.!!$F1 781
4 TraesCS2D01G142200 chr2B 135693966 135698542 4576 True 585.260000 1016 91.954200 3 2666 5 chr2B.!!$R1 2663
5 TraesCS2D01G142200 chr7D 127648065 127648681 616 False 279.000000 279 75.594000 2060 2669 1 chr7D.!!$F2 609
6 TraesCS2D01G142200 chr5A 593461024 593461795 771 False 377.000000 377 76.131000 2060 2835 1 chr5A.!!$F4 775
7 TraesCS2D01G142200 chr5A 393601170 393601875 705 False 359.000000 359 76.316000 1939 2646 1 chr5A.!!$F3 707
8 TraesCS2D01G142200 chr5B 74986243 74986891 648 False 490.000000 490 80.684000 1897 2558 1 chr5B.!!$F1 661
9 TraesCS2D01G142200 chr6A 421197155 421197756 601 True 435.000000 435 79.902000 2060 2666 1 chr6A.!!$R1 606
10 TraesCS2D01G142200 chr6B 719949358 719949956 598 False 265.000000 265 75.402000 2060 2664 1 chr6B.!!$F3 604
11 TraesCS2D01G142200 chr3B 362048922 362049520 598 True 298.000000 298 76.059000 2060 2665 1 chr3B.!!$R2 605
12 TraesCS2D01G142200 chr5D 402948943 402949496 553 False 250.000000 250 75.666000 2062 2600 1 chr5D.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 532 0.031994 GCAACGGTGAATTTGGTGCT 59.968 50.0 3.55 0.00 0.00 4.40 F
520 540 0.170339 GAATTTGGTGCTACCGGTGC 59.830 55.0 19.93 19.04 42.58 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1887 0.033366 GGTGAAAGCGCCCAACAATT 59.967 50.0 2.29 0.0 38.80 2.32 R
2355 5529 0.105593 ACATGCACGCCATCCTCTAG 59.894 55.0 0.00 0.0 29.71 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.064621 CCAATTTGATGAGCCGGCG 59.935 57.895 23.20 0.00 0.00 6.46
97 98 8.472007 TTTTACCACCAAATGTTTGATACTCT 57.528 30.769 7.04 0.00 40.55 3.24
104 105 9.388506 CACCAAATGTTTGATACTCTCTCTATT 57.611 33.333 7.04 0.00 40.55 1.73
118 119 7.995663 ACTCTCTCTATTCATCTATACAGGGT 58.004 38.462 0.00 0.00 0.00 4.34
127 128 7.559335 TTCATCTATACAGGGTCTAATGCAT 57.441 36.000 0.00 0.00 0.00 3.96
157 158 6.319911 TGAGACAAACATTGACCACATGTTAA 59.680 34.615 0.00 0.00 37.52 2.01
312 313 2.618045 CCTCGAAAACACATTAGGCCCT 60.618 50.000 0.00 0.00 0.00 5.19
313 314 3.370103 CCTCGAAAACACATTAGGCCCTA 60.370 47.826 0.00 0.00 0.00 3.53
326 327 8.324306 CACATTAGGCCCTATATATATGGATGG 58.676 40.741 16.00 2.93 0.00 3.51
357 358 2.444351 ACGTACTACTATTTCGCACGC 58.556 47.619 0.00 0.00 0.00 5.34
360 361 1.636988 ACTACTATTTCGCACGCCAC 58.363 50.000 0.00 0.00 0.00 5.01
413 433 4.518970 AGCATTAAATGTTCACCACTCGTT 59.481 37.500 0.00 0.00 0.00 3.85
475 495 2.282110 CCACCACCATGCGTTCCA 60.282 61.111 0.00 0.00 0.00 3.53
478 498 1.600636 ACCACCATGCGTTCCACAG 60.601 57.895 0.00 0.00 0.00 3.66
479 499 2.334946 CCACCATGCGTTCCACAGG 61.335 63.158 0.00 0.00 0.00 4.00
480 500 2.034066 ACCATGCGTTCCACAGGG 59.966 61.111 0.00 0.00 44.45 4.45
481 501 2.350895 CCATGCGTTCCACAGGGA 59.649 61.111 0.00 0.00 41.48 4.20
491 511 1.191535 TCCACAGGGAACGTATCTGG 58.808 55.000 14.38 7.25 41.32 3.86
492 512 0.902531 CCACAGGGAACGTATCTGGT 59.097 55.000 14.38 0.00 35.59 4.00
493 513 1.405526 CCACAGGGAACGTATCTGGTG 60.406 57.143 14.38 9.23 35.59 4.17
494 514 0.249398 ACAGGGAACGTATCTGGTGC 59.751 55.000 14.38 0.00 33.19 5.01
495 515 0.249120 CAGGGAACGTATCTGGTGCA 59.751 55.000 0.00 0.00 0.00 4.57
496 516 0.981183 AGGGAACGTATCTGGTGCAA 59.019 50.000 0.00 0.00 0.00 4.08
497 517 1.084289 GGGAACGTATCTGGTGCAAC 58.916 55.000 0.00 0.00 0.00 4.17
498 518 0.719465 GGAACGTATCTGGTGCAACG 59.281 55.000 4.88 4.88 38.12 4.10
499 519 0.719465 GAACGTATCTGGTGCAACGG 59.281 55.000 3.42 3.42 39.57 4.44
500 520 0.034337 AACGTATCTGGTGCAACGGT 59.966 50.000 11.12 0.00 39.57 4.83
501 521 0.669318 ACGTATCTGGTGCAACGGTG 60.669 55.000 11.12 0.00 39.57 4.94
502 522 0.389296 CGTATCTGGTGCAACGGTGA 60.389 55.000 11.12 2.14 38.12 4.02
503 523 1.803334 GTATCTGGTGCAACGGTGAA 58.197 50.000 11.12 0.00 38.12 3.18
504 524 2.356135 GTATCTGGTGCAACGGTGAAT 58.644 47.619 11.12 0.00 38.12 2.57
505 525 1.909700 ATCTGGTGCAACGGTGAATT 58.090 45.000 11.12 0.00 38.12 2.17
506 526 1.686355 TCTGGTGCAACGGTGAATTT 58.314 45.000 11.12 0.00 38.12 1.82
507 527 1.336440 TCTGGTGCAACGGTGAATTTG 59.664 47.619 11.12 0.00 38.12 2.32
508 528 0.387202 TGGTGCAACGGTGAATTTGG 59.613 50.000 3.55 0.00 38.12 3.28
509 529 0.387565 GGTGCAACGGTGAATTTGGT 59.612 50.000 3.55 0.00 38.12 3.67
510 530 1.486439 GTGCAACGGTGAATTTGGTG 58.514 50.000 3.55 0.00 0.00 4.17
511 531 0.249238 TGCAACGGTGAATTTGGTGC 60.249 50.000 3.55 4.58 0.00 5.01
512 532 0.031994 GCAACGGTGAATTTGGTGCT 59.968 50.000 3.55 0.00 0.00 4.40
513 533 1.268352 GCAACGGTGAATTTGGTGCTA 59.732 47.619 3.55 0.00 0.00 3.49
514 534 2.920647 GCAACGGTGAATTTGGTGCTAC 60.921 50.000 3.55 0.00 0.00 3.58
515 535 1.530323 ACGGTGAATTTGGTGCTACC 58.470 50.000 0.00 0.00 39.22 3.18
516 536 0.446222 CGGTGAATTTGGTGCTACCG 59.554 55.000 0.00 0.00 42.58 4.02
517 537 0.808755 GGTGAATTTGGTGCTACCGG 59.191 55.000 0.00 0.00 42.58 5.28
518 538 1.530323 GTGAATTTGGTGCTACCGGT 58.470 50.000 13.98 13.98 42.58 5.28
519 539 1.199097 GTGAATTTGGTGCTACCGGTG 59.801 52.381 19.93 8.61 42.58 4.94
520 540 0.170339 GAATTTGGTGCTACCGGTGC 59.830 55.000 19.93 19.04 42.58 5.01
521 541 0.538516 AATTTGGTGCTACCGGTGCA 60.539 50.000 19.93 21.51 42.58 4.57
535 555 2.086054 GGTGCACCGATCTCCATATC 57.914 55.000 22.49 0.00 0.00 1.63
536 556 1.620819 GGTGCACCGATCTCCATATCT 59.379 52.381 22.49 0.00 0.00 1.98
537 557 2.353208 GGTGCACCGATCTCCATATCTC 60.353 54.545 22.49 0.00 0.00 2.75
538 558 2.297315 GTGCACCGATCTCCATATCTCA 59.703 50.000 5.22 0.00 0.00 3.27
539 559 2.297315 TGCACCGATCTCCATATCTCAC 59.703 50.000 0.00 0.00 0.00 3.51
540 560 2.560542 GCACCGATCTCCATATCTCACT 59.439 50.000 0.00 0.00 0.00 3.41
541 561 3.006323 GCACCGATCTCCATATCTCACTT 59.994 47.826 0.00 0.00 0.00 3.16
542 562 4.502259 GCACCGATCTCCATATCTCACTTT 60.502 45.833 0.00 0.00 0.00 2.66
543 563 5.279006 GCACCGATCTCCATATCTCACTTTA 60.279 44.000 0.00 0.00 0.00 1.85
544 564 6.573289 GCACCGATCTCCATATCTCACTTTAT 60.573 42.308 0.00 0.00 0.00 1.40
545 565 7.363007 GCACCGATCTCCATATCTCACTTTATA 60.363 40.741 0.00 0.00 0.00 0.98
546 566 8.187480 CACCGATCTCCATATCTCACTTTATAG 58.813 40.741 0.00 0.00 0.00 1.31
547 567 8.110271 ACCGATCTCCATATCTCACTTTATAGA 58.890 37.037 0.00 0.00 0.00 1.98
548 568 8.402472 CCGATCTCCATATCTCACTTTATAGAC 58.598 40.741 0.00 0.00 0.00 2.59
549 569 8.951243 CGATCTCCATATCTCACTTTATAGACA 58.049 37.037 0.00 0.00 0.00 3.41
587 607 9.967451 TGAAATTTTATGAGGTGGTAAGTATGA 57.033 29.630 0.00 0.00 0.00 2.15
589 609 9.747898 AAATTTTATGAGGTGGTAAGTATGACA 57.252 29.630 0.00 0.00 0.00 3.58
590 610 8.732746 ATTTTATGAGGTGGTAAGTATGACAC 57.267 34.615 0.00 0.00 0.00 3.67
591 611 6.860790 TTATGAGGTGGTAAGTATGACACA 57.139 37.500 0.00 0.00 35.62 3.72
592 612 5.957771 ATGAGGTGGTAAGTATGACACAT 57.042 39.130 0.00 0.00 35.62 3.21
593 613 8.541899 TTATGAGGTGGTAAGTATGACACATA 57.458 34.615 0.00 0.00 35.62 2.29
594 614 7.618019 ATGAGGTGGTAAGTATGACACATAT 57.382 36.000 0.00 0.00 35.62 1.78
595 615 7.050970 TGAGGTGGTAAGTATGACACATATC 57.949 40.000 0.00 0.00 35.62 1.63
596 616 6.839134 TGAGGTGGTAAGTATGACACATATCT 59.161 38.462 0.00 0.00 35.62 1.98
597 617 8.002459 TGAGGTGGTAAGTATGACACATATCTA 58.998 37.037 0.00 0.00 35.62 1.98
598 618 8.179509 AGGTGGTAAGTATGACACATATCTAC 57.820 38.462 0.00 0.00 35.62 2.59
599 619 7.232941 AGGTGGTAAGTATGACACATATCTACC 59.767 40.741 16.53 16.53 35.62 3.18
600 620 7.014905 GGTGGTAAGTATGACACATATCTACCA 59.985 40.741 19.32 19.32 35.62 3.25
601 621 8.585881 GTGGTAAGTATGACACATATCTACCAT 58.414 37.037 22.52 0.00 35.53 3.55
602 622 9.816787 TGGTAAGTATGACACATATCTACCATA 57.183 33.333 19.32 8.20 0.00 2.74
637 657 9.921637 ATTGGATTCAAATTTAACGTACATTGT 57.078 25.926 0.00 0.00 36.36 2.71
638 658 9.751542 TTGGATTCAAATTTAACGTACATTGTT 57.248 25.926 0.00 0.00 0.00 2.83
671 691 8.752766 AAAAAGACAAATCATGCTGTGAATAG 57.247 30.769 0.00 0.00 40.97 1.73
672 692 7.458409 AAAGACAAATCATGCTGTGAATAGT 57.542 32.000 0.00 0.00 40.97 2.12
673 693 8.565896 AAAGACAAATCATGCTGTGAATAGTA 57.434 30.769 0.00 0.00 40.97 1.82
674 694 7.545362 AGACAAATCATGCTGTGAATAGTAC 57.455 36.000 0.00 0.00 40.97 2.73
675 695 6.540189 AGACAAATCATGCTGTGAATAGTACC 59.460 38.462 0.00 0.00 40.97 3.34
676 696 6.418101 ACAAATCATGCTGTGAATAGTACCT 58.582 36.000 0.00 0.00 40.97 3.08
677 697 7.564793 ACAAATCATGCTGTGAATAGTACCTA 58.435 34.615 0.00 0.00 40.97 3.08
678 698 8.046708 ACAAATCATGCTGTGAATAGTACCTAA 58.953 33.333 0.00 0.00 40.97 2.69
679 699 9.060347 CAAATCATGCTGTGAATAGTACCTAAT 57.940 33.333 0.00 0.00 40.97 1.73
680 700 8.613060 AATCATGCTGTGAATAGTACCTAATG 57.387 34.615 0.00 0.00 40.97 1.90
681 701 5.991606 TCATGCTGTGAATAGTACCTAATGC 59.008 40.000 0.00 0.00 32.78 3.56
682 702 5.351948 TGCTGTGAATAGTACCTAATGCA 57.648 39.130 0.00 0.00 0.00 3.96
683 703 5.739959 TGCTGTGAATAGTACCTAATGCAA 58.260 37.500 0.00 0.00 0.00 4.08
684 704 5.584649 TGCTGTGAATAGTACCTAATGCAAC 59.415 40.000 0.00 0.00 0.00 4.17
685 705 5.007724 GCTGTGAATAGTACCTAATGCAACC 59.992 44.000 0.00 0.00 0.00 3.77
686 706 6.308015 TGTGAATAGTACCTAATGCAACCT 57.692 37.500 0.00 0.00 0.00 3.50
687 707 6.112734 TGTGAATAGTACCTAATGCAACCTG 58.887 40.000 0.00 0.00 0.00 4.00
688 708 5.527582 GTGAATAGTACCTAATGCAACCTGG 59.472 44.000 0.00 0.00 0.00 4.45
689 709 4.706842 ATAGTACCTAATGCAACCTGGG 57.293 45.455 0.00 0.00 0.00 4.45
690 710 1.064685 AGTACCTAATGCAACCTGGGC 60.065 52.381 0.00 0.00 0.00 5.36
691 711 0.257616 TACCTAATGCAACCTGGGCC 59.742 55.000 0.00 0.00 0.00 5.80
692 712 1.307647 CCTAATGCAACCTGGGCCT 59.692 57.895 4.53 0.00 0.00 5.19
693 713 0.324645 CCTAATGCAACCTGGGCCTT 60.325 55.000 4.53 0.00 0.00 4.35
694 714 0.819582 CTAATGCAACCTGGGCCTTG 59.180 55.000 4.53 1.79 0.00 3.61
695 715 0.407528 TAATGCAACCTGGGCCTTGA 59.592 50.000 4.53 0.00 0.00 3.02
696 716 0.471591 AATGCAACCTGGGCCTTGAA 60.472 50.000 4.53 0.00 0.00 2.69
697 717 0.252375 ATGCAACCTGGGCCTTGAAT 60.252 50.000 4.53 0.00 0.00 2.57
698 718 0.471591 TGCAACCTGGGCCTTGAATT 60.472 50.000 4.53 0.00 0.00 2.17
699 719 0.247460 GCAACCTGGGCCTTGAATTC 59.753 55.000 4.53 0.00 0.00 2.17
700 720 1.631405 CAACCTGGGCCTTGAATTCA 58.369 50.000 3.38 3.38 0.00 2.57
701 721 1.547372 CAACCTGGGCCTTGAATTCAG 59.453 52.381 8.41 0.00 0.00 3.02
702 722 0.613012 ACCTGGGCCTTGAATTCAGC 60.613 55.000 8.41 9.55 0.00 4.26
703 723 1.325476 CCTGGGCCTTGAATTCAGCC 61.325 60.000 23.96 23.96 44.99 4.85
705 725 4.440145 GGCCTTGAATTCAGCCCA 57.560 55.556 22.30 2.81 39.60 5.36
706 726 2.906268 GGCCTTGAATTCAGCCCAT 58.094 52.632 22.30 0.00 39.60 4.00
707 727 1.197812 GGCCTTGAATTCAGCCCATT 58.802 50.000 22.30 0.00 39.60 3.16
708 728 1.556451 GGCCTTGAATTCAGCCCATTT 59.444 47.619 22.30 0.00 39.60 2.32
709 729 2.026915 GGCCTTGAATTCAGCCCATTTT 60.027 45.455 22.30 0.00 39.60 1.82
710 730 3.264947 GCCTTGAATTCAGCCCATTTTC 58.735 45.455 8.41 0.00 0.00 2.29
711 731 3.055602 GCCTTGAATTCAGCCCATTTTCT 60.056 43.478 8.41 0.00 0.00 2.52
712 732 4.160252 GCCTTGAATTCAGCCCATTTTCTA 59.840 41.667 8.41 0.00 0.00 2.10
713 733 5.163374 GCCTTGAATTCAGCCCATTTTCTAT 60.163 40.000 8.41 0.00 0.00 1.98
714 734 6.040842 GCCTTGAATTCAGCCCATTTTCTATA 59.959 38.462 8.41 0.00 0.00 1.31
715 735 7.256083 GCCTTGAATTCAGCCCATTTTCTATAT 60.256 37.037 8.41 0.00 0.00 0.86
716 736 8.302438 CCTTGAATTCAGCCCATTTTCTATATC 58.698 37.037 8.41 0.00 0.00 1.63
717 737 8.765488 TTGAATTCAGCCCATTTTCTATATCA 57.235 30.769 8.41 0.00 0.00 2.15
718 738 8.945195 TGAATTCAGCCCATTTTCTATATCAT 57.055 30.769 3.38 0.00 0.00 2.45
719 739 9.017509 TGAATTCAGCCCATTTTCTATATCATC 57.982 33.333 3.38 0.00 0.00 2.92
720 740 7.621428 ATTCAGCCCATTTTCTATATCATCG 57.379 36.000 0.00 0.00 0.00 3.84
721 741 6.358974 TCAGCCCATTTTCTATATCATCGA 57.641 37.500 0.00 0.00 0.00 3.59
722 742 6.950842 TCAGCCCATTTTCTATATCATCGAT 58.049 36.000 0.00 0.00 0.00 3.59
723 743 6.820152 TCAGCCCATTTTCTATATCATCGATG 59.180 38.462 19.61 19.61 0.00 3.84
724 744 6.820152 CAGCCCATTTTCTATATCATCGATGA 59.180 38.462 29.09 29.09 41.70 2.92
725 745 7.335171 CAGCCCATTTTCTATATCATCGATGAA 59.665 37.037 30.41 19.59 40.69 2.57
726 746 8.051535 AGCCCATTTTCTATATCATCGATGAAT 58.948 33.333 30.41 23.95 40.69 2.57
727 747 8.680903 GCCCATTTTCTATATCATCGATGAATT 58.319 33.333 30.41 21.86 40.69 2.17
757 777 7.518731 TTTTTGTGTCTAATGCTGTGTTTTC 57.481 32.000 0.00 0.00 0.00 2.29
758 778 5.826601 TTGTGTCTAATGCTGTGTTTTCA 57.173 34.783 0.00 0.00 0.00 2.69
759 779 5.826601 TGTGTCTAATGCTGTGTTTTCAA 57.173 34.783 0.00 0.00 0.00 2.69
760 780 6.389830 TGTGTCTAATGCTGTGTTTTCAAT 57.610 33.333 0.00 0.00 0.00 2.57
761 781 6.804677 TGTGTCTAATGCTGTGTTTTCAATT 58.195 32.000 0.00 0.00 0.00 2.32
762 782 7.264221 TGTGTCTAATGCTGTGTTTTCAATTT 58.736 30.769 0.00 0.00 0.00 1.82
763 783 7.222417 TGTGTCTAATGCTGTGTTTTCAATTTG 59.778 33.333 0.00 0.00 0.00 2.32
764 784 6.700960 TGTCTAATGCTGTGTTTTCAATTTGG 59.299 34.615 0.00 0.00 0.00 3.28
765 785 6.922957 GTCTAATGCTGTGTTTTCAATTTGGA 59.077 34.615 0.00 0.00 0.00 3.53
766 786 7.599998 GTCTAATGCTGTGTTTTCAATTTGGAT 59.400 33.333 0.00 0.00 0.00 3.41
767 787 6.790285 AATGCTGTGTTTTCAATTTGGATC 57.210 33.333 0.00 0.00 0.00 3.36
768 788 5.534207 TGCTGTGTTTTCAATTTGGATCT 57.466 34.783 0.00 0.00 0.00 2.75
769 789 5.531634 TGCTGTGTTTTCAATTTGGATCTC 58.468 37.500 0.00 0.00 0.00 2.75
770 790 5.068855 TGCTGTGTTTTCAATTTGGATCTCA 59.931 36.000 0.00 0.00 0.00 3.27
771 791 5.984926 GCTGTGTTTTCAATTTGGATCTCAA 59.015 36.000 0.00 0.00 0.00 3.02
802 822 8.709386 ATAGTACTACAGATTCTTGTTGCTTG 57.291 34.615 4.31 0.00 32.56 4.01
803 823 6.525629 AGTACTACAGATTCTTGTTGCTTGT 58.474 36.000 0.00 0.00 32.56 3.16
804 824 7.667557 AGTACTACAGATTCTTGTTGCTTGTA 58.332 34.615 0.00 0.00 32.56 2.41
805 825 6.787085 ACTACAGATTCTTGTTGCTTGTAC 57.213 37.500 0.00 0.00 32.56 2.90
806 826 6.288294 ACTACAGATTCTTGTTGCTTGTACA 58.712 36.000 0.00 0.00 32.56 2.90
807 827 6.765989 ACTACAGATTCTTGTTGCTTGTACAA 59.234 34.615 8.28 8.28 34.55 2.41
821 841 8.795786 TTGCTTGTACAACATATCTTTTGTTC 57.204 30.769 3.59 0.00 37.19 3.18
822 842 7.935520 TGCTTGTACAACATATCTTTTGTTCA 58.064 30.769 3.59 0.00 37.19 3.18
823 843 8.075574 TGCTTGTACAACATATCTTTTGTTCAG 58.924 33.333 3.59 0.00 35.34 3.02
824 844 8.289618 GCTTGTACAACATATCTTTTGTTCAGA 58.710 33.333 3.59 0.00 35.34 3.27
827 847 9.725019 TGTACAACATATCTTTTGTTCAGATCT 57.275 29.630 0.00 0.00 37.19 2.75
838 858 9.520204 TCTTTTGTTCAGATCTTTTTGACATTC 57.480 29.630 0.00 0.00 0.00 2.67
839 859 9.304731 CTTTTGTTCAGATCTTTTTGACATTCA 57.695 29.630 0.00 0.00 0.00 2.57
840 860 9.820725 TTTTGTTCAGATCTTTTTGACATTCAT 57.179 25.926 0.00 0.00 0.00 2.57
865 885 9.869757 ATAAATTGGACTTTATTAACTTGGTGC 57.130 29.630 0.00 0.00 29.10 5.01
866 886 6.909550 ATTGGACTTTATTAACTTGGTGCA 57.090 33.333 0.00 0.00 0.00 4.57
867 887 5.699097 TGGACTTTATTAACTTGGTGCAC 57.301 39.130 8.80 8.80 0.00 4.57
868 888 5.133941 TGGACTTTATTAACTTGGTGCACA 58.866 37.500 20.43 1.62 0.00 4.57
869 889 5.240623 TGGACTTTATTAACTTGGTGCACAG 59.759 40.000 20.43 11.04 0.00 3.66
870 890 5.335661 GGACTTTATTAACTTGGTGCACAGG 60.336 44.000 20.43 10.12 0.00 4.00
871 891 5.137551 ACTTTATTAACTTGGTGCACAGGT 58.862 37.500 20.43 9.72 41.75 4.00
872 892 6.300703 ACTTTATTAACTTGGTGCACAGGTA 58.699 36.000 20.43 8.59 38.62 3.08
873 893 6.430000 ACTTTATTAACTTGGTGCACAGGTAG 59.570 38.462 20.43 11.65 38.62 3.18
874 894 2.178912 TAACTTGGTGCACAGGTAGC 57.821 50.000 20.43 0.00 38.62 3.58
875 895 0.182537 AACTTGGTGCACAGGTAGCA 59.817 50.000 20.43 2.82 38.62 3.49
883 903 3.694043 TGCACAGGTAGCACAAGATAA 57.306 42.857 0.00 0.00 37.02 1.75
884 904 3.334691 TGCACAGGTAGCACAAGATAAC 58.665 45.455 0.00 0.00 37.02 1.89
885 905 3.007940 TGCACAGGTAGCACAAGATAACT 59.992 43.478 0.00 0.00 32.95 2.24
888 908 3.535561 CAGGTAGCACAAGATAACTGGG 58.464 50.000 0.00 0.00 45.40 4.45
889 909 3.055094 CAGGTAGCACAAGATAACTGGGT 60.055 47.826 0.00 0.00 45.40 4.51
890 910 3.055094 AGGTAGCACAAGATAACTGGGTG 60.055 47.826 0.00 0.00 31.20 4.61
894 914 2.783135 CACAAGATAACTGGGTGCACT 58.217 47.619 17.98 0.00 0.00 4.40
895 915 3.937814 CACAAGATAACTGGGTGCACTA 58.062 45.455 17.98 5.47 0.00 2.74
896 916 3.935203 CACAAGATAACTGGGTGCACTAG 59.065 47.826 17.98 17.14 0.00 2.57
897 917 3.838317 ACAAGATAACTGGGTGCACTAGA 59.162 43.478 22.51 5.89 0.00 2.43
898 918 4.471386 ACAAGATAACTGGGTGCACTAGAT 59.529 41.667 22.51 15.63 0.00 1.98
899 919 5.661312 ACAAGATAACTGGGTGCACTAGATA 59.339 40.000 22.51 16.93 0.00 1.98
900 920 6.327626 ACAAGATAACTGGGTGCACTAGATAT 59.672 38.462 22.51 19.85 0.00 1.63
901 921 7.147479 ACAAGATAACTGGGTGCACTAGATATT 60.147 37.037 22.51 12.29 0.00 1.28
902 922 7.380423 AGATAACTGGGTGCACTAGATATTT 57.620 36.000 22.51 14.75 0.00 1.40
903 923 7.806180 AGATAACTGGGTGCACTAGATATTTT 58.194 34.615 22.51 11.76 0.00 1.82
904 924 7.934120 AGATAACTGGGTGCACTAGATATTTTC 59.066 37.037 22.51 12.52 0.00 2.29
905 925 4.781934 ACTGGGTGCACTAGATATTTTCC 58.218 43.478 22.51 10.62 0.00 3.13
906 926 4.137543 CTGGGTGCACTAGATATTTTCCC 58.862 47.826 17.98 5.17 0.00 3.97
907 927 3.139077 GGGTGCACTAGATATTTTCCCG 58.861 50.000 17.98 0.00 0.00 5.14
1002 1023 3.625897 CCAGTCCCGCAGTCCACA 61.626 66.667 0.00 0.00 0.00 4.17
1048 1069 1.412343 GGCACCAGACACCACAAAATT 59.588 47.619 0.00 0.00 0.00 1.82
1100 1121 1.215382 CGACATGTCCTCGGCTTCA 59.785 57.895 20.03 0.00 0.00 3.02
1369 1399 0.443869 TTCGTCGTACGTACTCTGCC 59.556 55.000 22.55 5.69 43.14 4.85
1431 1486 2.281762 CGCGTATTAGTTGCACCTCTTC 59.718 50.000 0.00 0.00 0.00 2.87
1436 1491 5.812642 CGTATTAGTTGCACCTCTTCAGATT 59.187 40.000 0.00 0.00 0.00 2.40
1440 1495 3.005155 AGTTGCACCTCTTCAGATTTTGC 59.995 43.478 0.00 0.00 0.00 3.68
1483 1538 2.711922 CCGTTCGGGGAGAGAGTGG 61.712 68.421 3.04 0.00 0.00 4.00
1511 1566 1.067142 GCGTGGACTTGAGGTGACATA 60.067 52.381 0.00 0.00 0.00 2.29
1512 1567 2.607187 CGTGGACTTGAGGTGACATAC 58.393 52.381 0.00 0.00 0.00 2.39
1517 1572 2.987149 GACTTGAGGTGACATACGTGTG 59.013 50.000 11.09 11.09 39.09 3.82
1562 1620 2.046023 TTGATGCGAGTGGCCAGG 60.046 61.111 5.11 0.00 42.61 4.45
1628 1686 0.951558 CACCATATTTACTGGCGGGC 59.048 55.000 0.00 0.00 37.27 6.13
1647 1707 4.935205 CGGGCTTCCATCGATTTCATATTA 59.065 41.667 0.00 0.00 0.00 0.98
1666 1736 0.914644 AGCAAGCAGAAGGGCATCTA 59.085 50.000 0.00 0.00 35.83 1.98
1693 1763 0.602905 CACCCCTGAACCGAACACTC 60.603 60.000 0.00 0.00 0.00 3.51
1694 1764 0.763223 ACCCCTGAACCGAACACTCT 60.763 55.000 0.00 0.00 0.00 3.24
1695 1765 0.320771 CCCCTGAACCGAACACTCTG 60.321 60.000 0.00 0.00 0.00 3.35
1712 1782 3.700038 ACTCTGTTCGTTAGTGGATAGGG 59.300 47.826 0.00 0.00 0.00 3.53
1759 1829 4.922206 ACCATCCAACATTATCCGCATAT 58.078 39.130 0.00 0.00 0.00 1.78
1767 1837 4.759782 ACATTATCCGCATATAGAGGCAC 58.240 43.478 0.00 0.00 37.08 5.01
1776 1846 1.995376 TATAGAGGCACTGCATCCGA 58.005 50.000 11.99 1.41 40.43 4.55
1792 1862 3.492421 TCCGACACGTATTGAACCTAC 57.508 47.619 0.00 0.00 0.00 3.18
1793 1863 2.819019 TCCGACACGTATTGAACCTACA 59.181 45.455 0.00 0.00 0.00 2.74
1795 1865 4.082081 TCCGACACGTATTGAACCTACATT 60.082 41.667 0.00 0.00 0.00 2.71
1807 1877 8.606040 ATTGAACCTACATTTTGACCATTTTG 57.394 30.769 0.00 0.00 0.00 2.44
1810 1882 6.096673 ACCTACATTTTGACCATTTTGTCC 57.903 37.500 0.00 0.00 34.25 4.02
1813 1885 6.868339 CCTACATTTTGACCATTTTGTCCTTC 59.132 38.462 0.00 0.00 34.25 3.46
1814 1886 6.484364 ACATTTTGACCATTTTGTCCTTCT 57.516 33.333 0.00 0.00 34.25 2.85
1815 1887 7.595819 ACATTTTGACCATTTTGTCCTTCTA 57.404 32.000 0.00 0.00 34.25 2.10
1820 1892 7.595819 TTGACCATTTTGTCCTTCTAATTGT 57.404 32.000 0.00 0.00 34.25 2.71
1853 1929 9.881529 CTTTCACCATTAATGAATTGTTTTTGG 57.118 29.630 17.23 0.00 36.02 3.28
1957 3304 5.793817 TCCGTAGCATGCAAATATGTCTAT 58.206 37.500 21.98 0.00 0.00 1.98
2046 3428 2.957006 TCAAGAATACTAGCCCGAGTCC 59.043 50.000 0.00 0.00 0.00 3.85
2047 3429 1.998222 AGAATACTAGCCCGAGTCCC 58.002 55.000 0.00 0.00 0.00 4.46
2048 3430 1.217183 AGAATACTAGCCCGAGTCCCA 59.783 52.381 0.00 0.00 0.00 4.37
2052 3434 0.333993 ACTAGCCCGAGTCCCAAGTA 59.666 55.000 0.00 0.00 0.00 2.24
2103 3486 5.833131 GCCCCTTGAGTTTCATCCAATAATA 59.167 40.000 0.00 0.00 0.00 0.98
2150 3533 5.239963 TCTGACTTGTAGTACATCACGACAA 59.760 40.000 3.28 3.63 46.49 3.18
2184 3567 2.813754 ACGCAATGTGTAGAGCAACAAT 59.186 40.909 0.00 0.00 0.00 2.71
2237 3620 6.713792 AAGAAGAAGCAAACTTACGATCTC 57.286 37.500 0.00 0.00 35.82 2.75
2250 3633 0.863799 CGATCTCCATGGTTGATGCG 59.136 55.000 21.48 19.12 0.00 4.73
2300 3683 0.392461 ACCGCGCCACAATACTTCAT 60.392 50.000 0.00 0.00 0.00 2.57
2337 5511 7.783090 GATGATGTACCATCCATATGCTAAG 57.217 40.000 0.00 0.00 37.54 2.18
2355 5529 3.382048 AAGGACTTGACACTACGTTCC 57.618 47.619 0.00 0.00 0.00 3.62
2357 5531 3.759581 AGGACTTGACACTACGTTCCTA 58.240 45.455 0.00 0.00 0.00 2.94
2358 5532 3.757493 AGGACTTGACACTACGTTCCTAG 59.243 47.826 0.00 0.00 0.00 3.02
2359 5533 3.755378 GGACTTGACACTACGTTCCTAGA 59.245 47.826 0.00 0.00 0.00 2.43
2365 5539 3.288964 ACACTACGTTCCTAGAGGATGG 58.711 50.000 0.00 0.00 44.98 3.51
2366 5540 2.034812 CACTACGTTCCTAGAGGATGGC 59.965 54.545 0.00 0.00 44.98 4.40
2448 5628 0.405973 AAGACCCCCTTTTGCTCCTC 59.594 55.000 0.00 0.00 0.00 3.71
2478 5658 3.074412 GTCCACAGATACAACCAACCAG 58.926 50.000 0.00 0.00 0.00 4.00
2507 5687 1.734465 CAACAACTCATCCTCCTTCGC 59.266 52.381 0.00 0.00 0.00 4.70
2519 5700 0.034186 TCCTTCGCCGAGTACCCTAA 60.034 55.000 0.00 0.00 0.00 2.69
2549 5733 8.936864 CCTTCTTACTCTAAAAACGACATGAAT 58.063 33.333 0.00 0.00 0.00 2.57
2622 5807 1.731098 CGTCATGGACATCGTCGACAA 60.731 52.381 17.16 0.00 32.65 3.18
2676 5893 3.998672 GTGGACGGCGGGAGTTGA 61.999 66.667 13.24 0.00 0.00 3.18
2694 5911 1.207089 TGAGGATGTCCGACAATGTCC 59.793 52.381 7.91 8.34 42.08 4.02
2698 5915 2.818274 GTCCGACAATGTCCGGGC 60.818 66.667 18.81 15.44 45.36 6.13
2723 5943 1.592400 CCGGAGAGGTACAACAGCGA 61.592 60.000 0.00 0.00 34.51 4.93
2725 5945 0.601558 GGAGAGGTACAACAGCGACA 59.398 55.000 0.00 0.00 0.00 4.35
2726 5946 1.204941 GGAGAGGTACAACAGCGACAT 59.795 52.381 0.00 0.00 0.00 3.06
2727 5947 2.531206 GAGAGGTACAACAGCGACATC 58.469 52.381 0.00 0.00 0.00 3.06
2728 5948 1.135373 AGAGGTACAACAGCGACATCG 60.135 52.381 0.00 0.00 43.27 3.84
2733 5953 1.215382 CAACAGCGACATCGGAGGA 59.785 57.895 3.08 0.00 40.23 3.71
2735 5955 0.965866 AACAGCGACATCGGAGGAGA 60.966 55.000 3.08 0.00 40.23 3.71
2742 5962 0.252284 ACATCGGAGGAGAAGGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
2751 5971 1.168714 GAGAAGGGTGTGGATGCAAC 58.831 55.000 0.00 0.00 0.00 4.17
2752 5972 0.478072 AGAAGGGTGTGGATGCAACA 59.522 50.000 0.00 0.00 0.00 3.33
2763 5983 0.251341 GATGCAACACAAGGGGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
2790 6010 3.325135 ACGAAGTGGAAGAGAATGGAACT 59.675 43.478 0.00 0.00 42.51 3.01
2791 6011 3.681897 CGAAGTGGAAGAGAATGGAACTG 59.318 47.826 0.00 0.00 0.00 3.16
2798 6018 3.481559 AGAGAATGGAACTGGGAGAGA 57.518 47.619 0.00 0.00 0.00 3.10
2802 6022 0.419459 ATGGAACTGGGAGAGAGGGT 59.581 55.000 0.00 0.00 0.00 4.34
2805 6025 1.003696 GGAACTGGGAGAGAGGGTTTG 59.996 57.143 0.00 0.00 0.00 2.93
2807 6027 1.650528 ACTGGGAGAGAGGGTTTGAG 58.349 55.000 0.00 0.00 0.00 3.02
2808 6028 1.132689 ACTGGGAGAGAGGGTTTGAGT 60.133 52.381 0.00 0.00 0.00 3.41
2809 6029 1.277557 CTGGGAGAGAGGGTTTGAGTG 59.722 57.143 0.00 0.00 0.00 3.51
2810 6030 1.132849 TGGGAGAGAGGGTTTGAGTGA 60.133 52.381 0.00 0.00 0.00 3.41
2815 6035 1.376037 GAGGGTTTGAGTGAGGCCG 60.376 63.158 0.00 0.00 0.00 6.13
2817 6037 1.376037 GGGTTTGAGTGAGGCCGAG 60.376 63.158 0.00 0.00 0.00 4.63
2823 6043 2.526873 AGTGAGGCCGAGGGTGTT 60.527 61.111 0.00 0.00 0.00 3.32
2831 6051 1.913762 CCGAGGGTGTTGGAGTCCT 60.914 63.158 11.33 0.00 0.00 3.85
2835 6055 0.178941 AGGGTGTTGGAGTCCTACGT 60.179 55.000 17.33 0.00 32.19 3.57
2836 6056 0.037605 GGGTGTTGGAGTCCTACGTG 60.038 60.000 17.33 0.00 32.19 4.49
2837 6057 0.037605 GGTGTTGGAGTCCTACGTGG 60.038 60.000 17.33 0.00 32.19 4.94
2838 6058 0.669625 GTGTTGGAGTCCTACGTGGC 60.670 60.000 17.33 5.71 32.19 5.01
2839 6059 1.445582 GTTGGAGTCCTACGTGGCG 60.446 63.158 11.33 0.00 35.26 5.69
2840 6060 2.642254 TTGGAGTCCTACGTGGCGG 61.642 63.158 11.33 0.00 35.26 6.13
2841 6061 4.509737 GGAGTCCTACGTGGCGGC 62.510 72.222 0.00 0.00 35.26 6.53
2842 6062 4.849329 GAGTCCTACGTGGCGGCG 62.849 72.222 0.51 0.51 35.26 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.190535 ACGTAAAATTCATGAGCACACCC 59.809 43.478 0.00 0.00 0.00 4.61
1 2 4.419522 ACGTAAAATTCATGAGCACACC 57.580 40.909 0.00 0.00 0.00 4.16
43 44 1.889573 GCGTTAGGGCATCTCCAGC 60.890 63.158 0.00 0.00 36.21 4.85
104 105 7.559335 AATGCATTAGACCCTGTATAGATGA 57.441 36.000 11.02 0.00 0.00 2.92
141 142 8.706492 ATTATTGCTTTAACATGTGGTCAATG 57.294 30.769 0.00 0.00 0.00 2.82
191 192 7.096106 CGTTTCACGTAGGAATTTAACTGTGTA 60.096 37.037 0.00 0.00 36.74 2.90
193 194 6.068931 CGTTTCACGTAGGAATTTAACTGTG 58.931 40.000 0.00 0.00 36.74 3.66
287 288 3.821841 CCTAATGTGTTTTCGAGGTTGC 58.178 45.455 0.00 0.00 0.00 4.17
313 314 7.671819 CGTCATACTCCCTCCATCCATATATAT 59.328 40.741 0.00 0.00 0.00 0.86
326 327 7.359933 CGAAATAGTAGTACGTCATACTCCCTC 60.360 44.444 14.03 9.20 43.47 4.30
360 361 6.964370 TGTTTAGGACAATGCGAAATTATTCG 59.036 34.615 6.60 6.60 46.97 3.34
421 441 6.514947 AGGGCGTCGTACACATTTATATTAA 58.485 36.000 0.00 0.00 0.00 1.40
422 442 6.088016 AGGGCGTCGTACACATTTATATTA 57.912 37.500 0.00 0.00 0.00 0.98
475 495 0.249398 GCACCAGATACGTTCCCTGT 59.751 55.000 0.00 0.00 0.00 4.00
478 498 1.084289 GTTGCACCAGATACGTTCCC 58.916 55.000 0.00 0.00 0.00 3.97
479 499 0.719465 CGTTGCACCAGATACGTTCC 59.281 55.000 0.00 0.00 0.00 3.62
480 500 0.719465 CCGTTGCACCAGATACGTTC 59.281 55.000 0.00 0.00 32.45 3.95
481 501 0.034337 ACCGTTGCACCAGATACGTT 59.966 50.000 0.00 0.00 32.45 3.99
482 502 0.669318 CACCGTTGCACCAGATACGT 60.669 55.000 5.71 0.00 32.45 3.57
483 503 0.389296 TCACCGTTGCACCAGATACG 60.389 55.000 0.00 0.00 0.00 3.06
484 504 1.803334 TTCACCGTTGCACCAGATAC 58.197 50.000 0.00 0.00 0.00 2.24
485 505 2.779755 ATTCACCGTTGCACCAGATA 57.220 45.000 0.00 0.00 0.00 1.98
486 506 1.909700 AATTCACCGTTGCACCAGAT 58.090 45.000 0.00 0.00 0.00 2.90
487 507 1.336440 CAAATTCACCGTTGCACCAGA 59.664 47.619 0.00 0.00 0.00 3.86
488 508 1.602668 CCAAATTCACCGTTGCACCAG 60.603 52.381 0.00 0.00 0.00 4.00
489 509 0.387202 CCAAATTCACCGTTGCACCA 59.613 50.000 0.00 0.00 0.00 4.17
490 510 0.387565 ACCAAATTCACCGTTGCACC 59.612 50.000 0.00 0.00 0.00 5.01
491 511 1.486439 CACCAAATTCACCGTTGCAC 58.514 50.000 0.00 0.00 0.00 4.57
492 512 0.249238 GCACCAAATTCACCGTTGCA 60.249 50.000 0.00 0.00 0.00 4.08
493 513 0.031994 AGCACCAAATTCACCGTTGC 59.968 50.000 0.00 0.00 0.00 4.17
494 514 2.351350 GGTAGCACCAAATTCACCGTTG 60.351 50.000 1.01 0.00 38.42 4.10
495 515 1.883926 GGTAGCACCAAATTCACCGTT 59.116 47.619 1.01 0.00 38.42 4.44
496 516 1.530323 GGTAGCACCAAATTCACCGT 58.470 50.000 1.01 0.00 38.42 4.83
497 517 0.446222 CGGTAGCACCAAATTCACCG 59.554 55.000 6.21 0.00 42.41 4.94
498 518 0.808755 CCGGTAGCACCAAATTCACC 59.191 55.000 0.00 0.00 38.47 4.02
499 519 1.199097 CACCGGTAGCACCAAATTCAC 59.801 52.381 6.87 0.00 38.47 3.18
500 520 1.529226 CACCGGTAGCACCAAATTCA 58.471 50.000 6.87 0.00 38.47 2.57
501 521 0.170339 GCACCGGTAGCACCAAATTC 59.830 55.000 19.85 0.00 38.47 2.17
502 522 0.538516 TGCACCGGTAGCACCAAATT 60.539 50.000 22.47 0.00 38.47 1.82
503 523 1.074072 TGCACCGGTAGCACCAAAT 59.926 52.632 22.47 0.00 38.47 2.32
504 524 2.511403 TGCACCGGTAGCACCAAA 59.489 55.556 22.47 5.12 38.47 3.28
516 536 1.620819 AGATATGGAGATCGGTGCACC 59.379 52.381 26.78 26.78 0.00 5.01
517 537 2.297315 TGAGATATGGAGATCGGTGCAC 59.703 50.000 8.80 8.80 0.00 4.57
518 538 2.297315 GTGAGATATGGAGATCGGTGCA 59.703 50.000 0.00 0.00 0.00 4.57
519 539 2.560542 AGTGAGATATGGAGATCGGTGC 59.439 50.000 0.00 0.00 0.00 5.01
520 540 4.862902 AAGTGAGATATGGAGATCGGTG 57.137 45.455 0.00 0.00 0.00 4.94
521 541 8.110271 TCTATAAAGTGAGATATGGAGATCGGT 58.890 37.037 0.00 0.00 0.00 4.69
522 542 8.402472 GTCTATAAAGTGAGATATGGAGATCGG 58.598 40.741 0.00 0.00 0.00 4.18
523 543 8.951243 TGTCTATAAAGTGAGATATGGAGATCG 58.049 37.037 0.00 0.00 0.00 3.69
561 581 9.967451 TCATACTTACCACCTCATAAAATTTCA 57.033 29.630 0.00 0.00 0.00 2.69
563 583 9.747898 TGTCATACTTACCACCTCATAAAATTT 57.252 29.630 0.00 0.00 0.00 1.82
564 584 9.174166 GTGTCATACTTACCACCTCATAAAATT 57.826 33.333 0.00 0.00 0.00 1.82
565 585 8.325787 TGTGTCATACTTACCACCTCATAAAAT 58.674 33.333 0.00 0.00 0.00 1.82
566 586 7.681679 TGTGTCATACTTACCACCTCATAAAA 58.318 34.615 0.00 0.00 0.00 1.52
567 587 7.247456 TGTGTCATACTTACCACCTCATAAA 57.753 36.000 0.00 0.00 0.00 1.40
568 588 6.860790 TGTGTCATACTTACCACCTCATAA 57.139 37.500 0.00 0.00 0.00 1.90
569 589 8.721133 ATATGTGTCATACTTACCACCTCATA 57.279 34.615 0.00 0.00 0.00 2.15
570 590 5.957771 ATGTGTCATACTTACCACCTCAT 57.042 39.130 0.00 0.00 0.00 2.90
571 591 6.839134 AGATATGTGTCATACTTACCACCTCA 59.161 38.462 0.00 0.00 0.00 3.86
572 592 7.291411 AGATATGTGTCATACTTACCACCTC 57.709 40.000 0.00 0.00 0.00 3.85
573 593 7.232941 GGTAGATATGTGTCATACTTACCACCT 59.767 40.741 17.23 0.00 0.00 4.00
574 594 7.014905 TGGTAGATATGTGTCATACTTACCACC 59.985 40.741 19.07 11.58 0.00 4.61
575 595 7.948357 TGGTAGATATGTGTCATACTTACCAC 58.052 38.462 19.07 0.00 0.00 4.16
576 596 8.721133 ATGGTAGATATGTGTCATACTTACCA 57.279 34.615 22.02 22.02 0.00 3.25
611 631 9.921637 ACAATGTACGTTAAATTTGAATCCAAT 57.078 25.926 0.00 0.00 31.46 3.16
612 632 9.751542 AACAATGTACGTTAAATTTGAATCCAA 57.248 25.926 0.00 0.00 0.00 3.53
646 666 8.362639 ACTATTCACAGCATGATTTGTCTTTTT 58.637 29.630 0.00 0.00 39.69 1.94
647 667 7.889469 ACTATTCACAGCATGATTTGTCTTTT 58.111 30.769 0.00 0.00 39.69 2.27
648 668 7.458409 ACTATTCACAGCATGATTTGTCTTT 57.542 32.000 0.00 0.00 39.69 2.52
649 669 7.066284 GGTACTATTCACAGCATGATTTGTCTT 59.934 37.037 0.00 0.00 39.69 3.01
650 670 6.540189 GGTACTATTCACAGCATGATTTGTCT 59.460 38.462 0.00 0.00 39.69 3.41
651 671 6.540189 AGGTACTATTCACAGCATGATTTGTC 59.460 38.462 0.00 0.00 34.51 3.18
652 672 6.418101 AGGTACTATTCACAGCATGATTTGT 58.582 36.000 0.00 0.00 34.51 2.83
653 673 6.932356 AGGTACTATTCACAGCATGATTTG 57.068 37.500 0.00 0.00 34.51 2.32
654 674 9.060347 CATTAGGTACTATTCACAGCATGATTT 57.940 33.333 0.00 0.00 42.38 2.17
655 675 7.173907 GCATTAGGTACTATTCACAGCATGATT 59.826 37.037 0.00 0.00 42.38 2.57
656 676 6.652481 GCATTAGGTACTATTCACAGCATGAT 59.348 38.462 0.00 0.00 42.38 2.45
657 677 5.991606 GCATTAGGTACTATTCACAGCATGA 59.008 40.000 0.00 0.00 42.38 3.07
658 678 5.759763 TGCATTAGGTACTATTCACAGCATG 59.240 40.000 0.00 0.00 42.38 4.06
659 679 5.928976 TGCATTAGGTACTATTCACAGCAT 58.071 37.500 0.00 0.00 42.38 3.79
660 680 5.351948 TGCATTAGGTACTATTCACAGCA 57.648 39.130 0.00 0.00 42.38 4.41
661 681 5.007724 GGTTGCATTAGGTACTATTCACAGC 59.992 44.000 0.00 0.00 42.38 4.40
662 682 6.258727 CAGGTTGCATTAGGTACTATTCACAG 59.741 42.308 0.00 0.00 42.38 3.66
663 683 6.112734 CAGGTTGCATTAGGTACTATTCACA 58.887 40.000 0.00 0.00 42.38 3.58
664 684 5.527582 CCAGGTTGCATTAGGTACTATTCAC 59.472 44.000 0.00 0.00 42.38 3.18
665 685 5.397447 CCCAGGTTGCATTAGGTACTATTCA 60.397 44.000 0.00 0.00 42.38 2.57
666 686 5.063880 CCCAGGTTGCATTAGGTACTATTC 58.936 45.833 0.00 0.00 42.38 1.75
667 687 4.688874 GCCCAGGTTGCATTAGGTACTATT 60.689 45.833 0.00 0.00 42.38 1.73
668 688 3.181443 GCCCAGGTTGCATTAGGTACTAT 60.181 47.826 0.00 0.00 42.38 2.12
669 689 2.171870 GCCCAGGTTGCATTAGGTACTA 59.828 50.000 0.00 0.00 41.75 1.82
670 690 1.064685 GCCCAGGTTGCATTAGGTACT 60.065 52.381 0.00 0.00 46.37 2.73
671 691 1.389555 GCCCAGGTTGCATTAGGTAC 58.610 55.000 0.00 0.00 0.00 3.34
672 692 0.257616 GGCCCAGGTTGCATTAGGTA 59.742 55.000 0.00 0.00 0.00 3.08
673 693 1.000359 GGCCCAGGTTGCATTAGGT 60.000 57.895 0.00 0.00 0.00 3.08
674 694 0.324645 AAGGCCCAGGTTGCATTAGG 60.325 55.000 0.00 0.00 29.89 2.69
675 695 0.819582 CAAGGCCCAGGTTGCATTAG 59.180 55.000 0.00 0.00 30.63 1.73
676 696 0.407528 TCAAGGCCCAGGTTGCATTA 59.592 50.000 0.00 0.00 30.63 1.90
677 697 0.471591 TTCAAGGCCCAGGTTGCATT 60.472 50.000 0.00 0.00 32.15 3.56
678 698 0.252375 ATTCAAGGCCCAGGTTGCAT 60.252 50.000 0.00 0.00 0.00 3.96
679 699 0.471591 AATTCAAGGCCCAGGTTGCA 60.472 50.000 0.00 0.00 0.00 4.08
680 700 0.247460 GAATTCAAGGCCCAGGTTGC 59.753 55.000 0.00 0.00 0.00 4.17
681 701 1.547372 CTGAATTCAAGGCCCAGGTTG 59.453 52.381 9.88 0.00 0.00 3.77
682 702 1.928868 CTGAATTCAAGGCCCAGGTT 58.071 50.000 9.88 0.00 0.00 3.50
683 703 0.613012 GCTGAATTCAAGGCCCAGGT 60.613 55.000 9.88 0.00 0.00 4.00
684 704 1.325476 GGCTGAATTCAAGGCCCAGG 61.325 60.000 22.30 5.30 38.77 4.45
685 705 2.196319 GGCTGAATTCAAGGCCCAG 58.804 57.895 22.30 5.96 38.77 4.45
686 706 4.440145 GGCTGAATTCAAGGCCCA 57.560 55.556 22.30 0.00 38.77 5.36
688 708 1.197812 AATGGGCTGAATTCAAGGCC 58.802 50.000 28.22 28.22 46.84 5.19
689 709 3.055602 AGAAAATGGGCTGAATTCAAGGC 60.056 43.478 9.88 14.57 0.00 4.35
690 710 4.813750 AGAAAATGGGCTGAATTCAAGG 57.186 40.909 9.88 0.00 0.00 3.61
691 711 8.853126 TGATATAGAAAATGGGCTGAATTCAAG 58.147 33.333 9.88 5.19 0.00 3.02
692 712 8.765488 TGATATAGAAAATGGGCTGAATTCAA 57.235 30.769 9.88 0.00 0.00 2.69
693 713 8.945195 ATGATATAGAAAATGGGCTGAATTCA 57.055 30.769 8.12 8.12 0.00 2.57
694 714 8.180267 CGATGATATAGAAAATGGGCTGAATTC 58.820 37.037 0.00 0.00 0.00 2.17
695 715 7.884877 TCGATGATATAGAAAATGGGCTGAATT 59.115 33.333 0.00 0.00 0.00 2.17
696 716 7.397221 TCGATGATATAGAAAATGGGCTGAAT 58.603 34.615 0.00 0.00 0.00 2.57
697 717 6.768483 TCGATGATATAGAAAATGGGCTGAA 58.232 36.000 0.00 0.00 0.00 3.02
698 718 6.358974 TCGATGATATAGAAAATGGGCTGA 57.641 37.500 0.00 0.00 0.00 4.26
699 719 6.820152 TCATCGATGATATAGAAAATGGGCTG 59.180 38.462 23.99 0.00 0.00 4.85
700 720 6.950842 TCATCGATGATATAGAAAATGGGCT 58.049 36.000 23.99 0.00 0.00 5.19
701 721 7.615582 TTCATCGATGATATAGAAAATGGGC 57.384 36.000 27.75 0.00 36.56 5.36
733 753 7.093354 TGAAAACACAGCATTAGACACAAAAA 58.907 30.769 0.00 0.00 0.00 1.94
734 754 6.625362 TGAAAACACAGCATTAGACACAAAA 58.375 32.000 0.00 0.00 0.00 2.44
735 755 6.201226 TGAAAACACAGCATTAGACACAAA 57.799 33.333 0.00 0.00 0.00 2.83
736 756 5.826601 TGAAAACACAGCATTAGACACAA 57.173 34.783 0.00 0.00 0.00 3.33
737 757 5.826601 TTGAAAACACAGCATTAGACACA 57.173 34.783 0.00 0.00 0.00 3.72
738 758 7.306749 CCAAATTGAAAACACAGCATTAGACAC 60.307 37.037 0.00 0.00 0.00 3.67
739 759 6.700960 CCAAATTGAAAACACAGCATTAGACA 59.299 34.615 0.00 0.00 0.00 3.41
740 760 6.922957 TCCAAATTGAAAACACAGCATTAGAC 59.077 34.615 0.00 0.00 0.00 2.59
741 761 7.048629 TCCAAATTGAAAACACAGCATTAGA 57.951 32.000 0.00 0.00 0.00 2.10
742 762 7.816031 AGATCCAAATTGAAAACACAGCATTAG 59.184 33.333 0.00 0.00 0.00 1.73
743 763 7.669427 AGATCCAAATTGAAAACACAGCATTA 58.331 30.769 0.00 0.00 0.00 1.90
744 764 6.527423 AGATCCAAATTGAAAACACAGCATT 58.473 32.000 0.00 0.00 0.00 3.56
745 765 6.105397 AGATCCAAATTGAAAACACAGCAT 57.895 33.333 0.00 0.00 0.00 3.79
746 766 5.068855 TGAGATCCAAATTGAAAACACAGCA 59.931 36.000 0.00 0.00 0.00 4.41
747 767 5.531634 TGAGATCCAAATTGAAAACACAGC 58.468 37.500 0.00 0.00 0.00 4.40
776 796 9.803315 CAAGCAACAAGAATCTGTAGTACTATA 57.197 33.333 5.75 2.15 0.00 1.31
777 797 8.314751 ACAAGCAACAAGAATCTGTAGTACTAT 58.685 33.333 5.75 0.00 0.00 2.12
778 798 7.667557 ACAAGCAACAAGAATCTGTAGTACTA 58.332 34.615 0.00 0.00 0.00 1.82
779 799 6.525629 ACAAGCAACAAGAATCTGTAGTACT 58.474 36.000 0.00 0.00 0.00 2.73
780 800 6.787085 ACAAGCAACAAGAATCTGTAGTAC 57.213 37.500 0.00 0.00 0.00 2.73
781 801 7.438564 TGTACAAGCAACAAGAATCTGTAGTA 58.561 34.615 0.00 0.00 0.00 1.82
782 802 6.288294 TGTACAAGCAACAAGAATCTGTAGT 58.712 36.000 0.00 0.00 0.00 2.73
783 803 6.785488 TGTACAAGCAACAAGAATCTGTAG 57.215 37.500 0.00 0.00 0.00 2.74
784 804 6.954944 GTTGTACAAGCAACAAGAATCTGTA 58.045 36.000 8.98 0.00 45.70 2.74
785 805 5.821204 GTTGTACAAGCAACAAGAATCTGT 58.179 37.500 8.98 0.00 45.70 3.41
795 815 8.574196 AACAAAAGATATGTTGTACAAGCAAC 57.426 30.769 8.98 0.00 46.36 4.17
796 816 8.409371 TGAACAAAAGATATGTTGTACAAGCAA 58.591 29.630 8.98 0.00 40.90 3.91
797 817 7.935520 TGAACAAAAGATATGTTGTACAAGCA 58.064 30.769 8.98 10.58 40.90 3.91
798 818 8.289618 TCTGAACAAAAGATATGTTGTACAAGC 58.710 33.333 8.98 4.97 40.90 4.01
801 821 9.725019 AGATCTGAACAAAAGATATGTTGTACA 57.275 29.630 0.00 0.00 40.90 2.90
812 832 9.520204 GAATGTCAAAAAGATCTGAACAAAAGA 57.480 29.630 0.00 0.00 0.00 2.52
813 833 9.304731 TGAATGTCAAAAAGATCTGAACAAAAG 57.695 29.630 0.00 0.00 0.00 2.27
814 834 9.820725 ATGAATGTCAAAAAGATCTGAACAAAA 57.179 25.926 0.00 0.00 0.00 2.44
839 859 9.869757 GCACCAAGTTAATAAAGTCCAATTTAT 57.130 29.630 0.00 0.00 37.02 1.40
840 860 8.861086 TGCACCAAGTTAATAAAGTCCAATTTA 58.139 29.630 0.00 0.00 0.00 1.40
841 861 7.655732 GTGCACCAAGTTAATAAAGTCCAATTT 59.344 33.333 5.22 0.00 0.00 1.82
842 862 7.151976 GTGCACCAAGTTAATAAAGTCCAATT 58.848 34.615 5.22 0.00 0.00 2.32
843 863 6.266558 TGTGCACCAAGTTAATAAAGTCCAAT 59.733 34.615 15.69 0.00 0.00 3.16
844 864 5.594725 TGTGCACCAAGTTAATAAAGTCCAA 59.405 36.000 15.69 0.00 0.00 3.53
845 865 5.133941 TGTGCACCAAGTTAATAAAGTCCA 58.866 37.500 15.69 0.00 0.00 4.02
846 866 5.335661 CCTGTGCACCAAGTTAATAAAGTCC 60.336 44.000 15.69 0.00 0.00 3.85
847 867 5.240844 ACCTGTGCACCAAGTTAATAAAGTC 59.759 40.000 15.69 0.00 0.00 3.01
848 868 5.137551 ACCTGTGCACCAAGTTAATAAAGT 58.862 37.500 15.69 0.00 0.00 2.66
849 869 5.705609 ACCTGTGCACCAAGTTAATAAAG 57.294 39.130 15.69 0.00 0.00 1.85
850 870 5.182380 GCTACCTGTGCACCAAGTTAATAAA 59.818 40.000 15.69 0.00 0.00 1.40
851 871 4.698304 GCTACCTGTGCACCAAGTTAATAA 59.302 41.667 15.69 0.00 0.00 1.40
852 872 4.258543 GCTACCTGTGCACCAAGTTAATA 58.741 43.478 15.69 0.00 0.00 0.98
853 873 3.081804 GCTACCTGTGCACCAAGTTAAT 58.918 45.455 15.69 0.00 0.00 1.40
854 874 2.158740 TGCTACCTGTGCACCAAGTTAA 60.159 45.455 15.69 0.00 35.31 2.01
855 875 1.418264 TGCTACCTGTGCACCAAGTTA 59.582 47.619 15.69 0.00 35.31 2.24
856 876 0.182537 TGCTACCTGTGCACCAAGTT 59.817 50.000 15.69 0.00 35.31 2.66
857 877 1.836391 TGCTACCTGTGCACCAAGT 59.164 52.632 15.69 11.37 35.31 3.16
858 878 4.798433 TGCTACCTGTGCACCAAG 57.202 55.556 15.69 5.73 35.31 3.61
863 883 3.007940 AGTTATCTTGTGCTACCTGTGCA 59.992 43.478 0.00 0.00 38.19 4.57
864 884 3.372206 CAGTTATCTTGTGCTACCTGTGC 59.628 47.826 0.00 0.00 0.00 4.57
865 885 3.935203 CCAGTTATCTTGTGCTACCTGTG 59.065 47.826 0.00 0.00 0.00 3.66
866 886 3.055094 CCCAGTTATCTTGTGCTACCTGT 60.055 47.826 0.00 0.00 0.00 4.00
867 887 3.055094 ACCCAGTTATCTTGTGCTACCTG 60.055 47.826 0.00 0.00 0.00 4.00
868 888 3.055094 CACCCAGTTATCTTGTGCTACCT 60.055 47.826 0.00 0.00 0.00 3.08
869 889 3.270877 CACCCAGTTATCTTGTGCTACC 58.729 50.000 0.00 0.00 0.00 3.18
870 890 2.678336 GCACCCAGTTATCTTGTGCTAC 59.322 50.000 14.01 0.00 42.08 3.58
871 891 2.304470 TGCACCCAGTTATCTTGTGCTA 59.696 45.455 18.82 8.67 43.92 3.49
872 892 1.073763 TGCACCCAGTTATCTTGTGCT 59.926 47.619 18.82 0.00 43.92 4.40
873 893 1.200020 GTGCACCCAGTTATCTTGTGC 59.800 52.381 5.22 14.26 43.88 4.57
874 894 2.783135 AGTGCACCCAGTTATCTTGTG 58.217 47.619 14.63 0.00 0.00 3.33
875 895 3.838317 TCTAGTGCACCCAGTTATCTTGT 59.162 43.478 14.63 0.00 0.00 3.16
876 896 4.471904 TCTAGTGCACCCAGTTATCTTG 57.528 45.455 14.63 0.00 0.00 3.02
877 897 7.380423 AATATCTAGTGCACCCAGTTATCTT 57.620 36.000 14.63 1.14 0.00 2.40
878 898 7.380423 AAATATCTAGTGCACCCAGTTATCT 57.620 36.000 14.63 0.65 0.00 1.98
879 899 7.173390 GGAAAATATCTAGTGCACCCAGTTATC 59.827 40.741 14.63 5.69 0.00 1.75
880 900 6.998673 GGAAAATATCTAGTGCACCCAGTTAT 59.001 38.462 14.63 12.47 0.00 1.89
881 901 6.354130 GGAAAATATCTAGTGCACCCAGTTA 58.646 40.000 14.63 10.75 0.00 2.24
882 902 5.193679 GGAAAATATCTAGTGCACCCAGTT 58.806 41.667 14.63 8.86 0.00 3.16
883 903 4.385310 GGGAAAATATCTAGTGCACCCAGT 60.385 45.833 14.63 0.00 35.41 4.00
884 904 4.137543 GGGAAAATATCTAGTGCACCCAG 58.862 47.826 14.63 11.53 35.41 4.45
885 905 3.433031 CGGGAAAATATCTAGTGCACCCA 60.433 47.826 14.63 0.10 35.07 4.51
886 906 3.139077 CGGGAAAATATCTAGTGCACCC 58.861 50.000 14.63 2.86 0.00 4.61
887 907 2.548480 GCGGGAAAATATCTAGTGCACC 59.452 50.000 14.63 0.00 0.00 5.01
888 908 2.221055 CGCGGGAAAATATCTAGTGCAC 59.779 50.000 9.40 9.40 0.00 4.57
889 909 2.159014 ACGCGGGAAAATATCTAGTGCA 60.159 45.455 12.47 0.00 0.00 4.57
890 910 2.480845 ACGCGGGAAAATATCTAGTGC 58.519 47.619 12.47 0.00 0.00 4.40
891 911 3.493503 GGAACGCGGGAAAATATCTAGTG 59.506 47.826 12.47 0.00 0.00 2.74
892 912 3.133362 TGGAACGCGGGAAAATATCTAGT 59.867 43.478 12.47 0.00 0.00 2.57
893 913 3.493503 GTGGAACGCGGGAAAATATCTAG 59.506 47.826 12.47 0.00 0.00 2.43
894 914 3.118702 TGTGGAACGCGGGAAAATATCTA 60.119 43.478 12.47 0.00 45.01 1.98
895 915 2.285977 GTGGAACGCGGGAAAATATCT 58.714 47.619 12.47 0.00 0.00 1.98
896 916 2.011222 TGTGGAACGCGGGAAAATATC 58.989 47.619 12.47 0.00 45.01 1.63
897 917 2.116827 TGTGGAACGCGGGAAAATAT 57.883 45.000 12.47 0.00 45.01 1.28
898 918 1.740585 CATGTGGAACGCGGGAAAATA 59.259 47.619 12.47 0.00 45.01 1.40
899 919 0.525761 CATGTGGAACGCGGGAAAAT 59.474 50.000 12.47 0.00 45.01 1.82
900 920 1.953017 CATGTGGAACGCGGGAAAA 59.047 52.632 12.47 0.00 45.01 2.29
901 921 2.622011 GCATGTGGAACGCGGGAAA 61.622 57.895 12.47 0.00 45.01 3.13
902 922 3.053291 GCATGTGGAACGCGGGAA 61.053 61.111 12.47 0.00 45.01 3.97
1002 1023 2.033577 GCGATCGACGAGATATAGCGAT 60.034 50.000 21.57 0.00 45.77 4.58
1048 1069 2.032620 GATGGGAGAAGAGCTCGGTTA 58.967 52.381 8.37 0.00 44.91 2.85
1164 1194 1.226575 TGTCGATCAAGCGGCGTAG 60.227 57.895 9.37 0.00 39.05 3.51
1369 1399 3.815856 ATCATGAGAGTGTGGTAGCAG 57.184 47.619 0.09 0.00 0.00 4.24
1431 1486 4.320667 TGTAACGATCACGCAAAATCTG 57.679 40.909 0.00 0.00 43.96 2.90
1436 1491 3.845178 AGAGATGTAACGATCACGCAAA 58.155 40.909 0.00 0.00 43.96 3.68
1440 1495 4.275662 GAGTGAGAGATGTAACGATCACG 58.724 47.826 0.00 0.00 41.41 4.35
1483 1538 2.049063 AAGTCCACGCACGCTCTC 60.049 61.111 0.00 0.00 0.00 3.20
1532 1587 1.667756 CGCATCAAGCTTGCAATGTGT 60.668 47.619 23.62 4.79 42.61 3.72
1562 1620 4.569029 CACGAGCGTTGATAATTTCTGAC 58.431 43.478 0.00 0.00 0.00 3.51
1628 1686 7.020010 GCTTGCTAATATGAAATCGATGGAAG 58.980 38.462 0.00 1.05 0.00 3.46
1647 1707 0.914644 TAGATGCCCTTCTGCTTGCT 59.085 50.000 0.00 0.00 0.00 3.91
1666 1736 1.227853 GTTCAGGGGTGAGCGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
1693 1763 3.952323 TCTCCCTATCCACTAACGAACAG 59.048 47.826 0.00 0.00 0.00 3.16
1694 1764 3.972133 TCTCCCTATCCACTAACGAACA 58.028 45.455 0.00 0.00 0.00 3.18
1695 1765 4.996788 TTCTCCCTATCCACTAACGAAC 57.003 45.455 0.00 0.00 0.00 3.95
1712 1782 0.179111 TCCGCATCCGTGTGATTCTC 60.179 55.000 0.00 0.00 38.10 2.87
1759 1829 0.970427 TGTCGGATGCAGTGCCTCTA 60.970 55.000 18.25 6.20 0.00 2.43
1767 1837 1.921243 TCAATACGTGTCGGATGCAG 58.079 50.000 0.00 0.00 27.51 4.41
1776 1846 6.072893 GGTCAAAATGTAGGTTCAATACGTGT 60.073 38.462 0.00 0.00 0.00 4.49
1792 1862 9.492973 AATTAGAAGGACAAAATGGTCAAAATG 57.507 29.630 0.00 0.00 39.59 2.32
1793 1863 9.492973 CAATTAGAAGGACAAAATGGTCAAAAT 57.507 29.630 0.00 0.00 39.59 1.82
1795 1865 8.017418 ACAATTAGAAGGACAAAATGGTCAAA 57.983 30.769 0.00 0.00 39.59 2.69
1807 1877 1.132453 GCGCCCAACAATTAGAAGGAC 59.868 52.381 0.00 0.00 0.00 3.85
1810 1882 3.057596 TGAAAGCGCCCAACAATTAGAAG 60.058 43.478 2.29 0.00 0.00 2.85
1813 1885 2.595386 GTGAAAGCGCCCAACAATTAG 58.405 47.619 2.29 0.00 0.00 1.73
1814 1886 1.271102 GGTGAAAGCGCCCAACAATTA 59.729 47.619 2.29 0.00 38.80 1.40
1815 1887 0.033366 GGTGAAAGCGCCCAACAATT 59.967 50.000 2.29 0.00 38.80 2.32
1820 1892 1.621992 TTAATGGTGAAAGCGCCCAA 58.378 45.000 2.29 0.00 44.26 4.12
1893 1978 9.177608 TCTATCTGAATTTTGATGAATTCCGTT 57.822 29.630 2.27 0.00 42.59 4.44
1935 3282 6.486253 AATAGACATATTTGCATGCTACGG 57.514 37.500 20.33 6.20 0.00 4.02
2039 3421 1.246056 TGTCGGTACTTGGGACTCGG 61.246 60.000 0.00 0.00 0.00 4.63
2046 3428 2.478894 GACAACATGTGTCGGTACTTGG 59.521 50.000 0.00 0.00 46.99 3.61
2047 3429 3.788434 GACAACATGTGTCGGTACTTG 57.212 47.619 0.00 0.00 46.99 3.16
2103 3486 2.816087 GACAGACCATTCAAGCACATGT 59.184 45.455 0.00 0.00 0.00 3.21
2156 3539 3.001365 GCTCTACACATTGCGTAACGTAC 60.001 47.826 0.00 0.00 0.00 3.67
2160 3543 3.185594 TGTTGCTCTACACATTGCGTAAC 59.814 43.478 0.00 0.00 0.00 2.50
2161 3544 3.394719 TGTTGCTCTACACATTGCGTAA 58.605 40.909 0.00 0.00 0.00 3.18
2164 3547 2.967459 TTGTTGCTCTACACATTGCG 57.033 45.000 0.00 0.00 0.00 4.85
2165 3548 4.083110 ACTCATTGTTGCTCTACACATTGC 60.083 41.667 0.00 0.00 0.00 3.56
2169 3552 4.335400 TCACTCATTGTTGCTCTACACA 57.665 40.909 0.00 0.00 0.00 3.72
2170 3553 5.466728 TCTTTCACTCATTGTTGCTCTACAC 59.533 40.000 0.00 0.00 0.00 2.90
2207 3590 9.871238 TCGTAAGTTTGCTTCTTCTTATTCTAT 57.129 29.630 0.00 0.00 36.22 1.98
2212 3595 7.492994 GGAGATCGTAAGTTTGCTTCTTCTTAT 59.507 37.037 0.00 0.00 36.22 1.73
2237 3620 2.616786 ATTGCGCGCATCAACCATGG 62.617 55.000 36.83 11.19 32.37 3.66
2278 3661 1.582610 AAGTATTGTGGCGCGGTTGG 61.583 55.000 8.83 0.00 0.00 3.77
2300 3683 0.749049 CATCATCCAGAGCTCCGTCA 59.251 55.000 10.93 0.00 0.00 4.35
2327 5497 5.687730 CGTAGTGTCAAGTCCTTAGCATATG 59.312 44.000 0.00 0.00 0.00 1.78
2337 5511 3.755378 TCTAGGAACGTAGTGTCAAGTCC 59.245 47.826 0.00 0.00 45.00 3.85
2355 5529 0.105593 ACATGCACGCCATCCTCTAG 59.894 55.000 0.00 0.00 29.71 2.43
2357 5531 1.153289 GACATGCACGCCATCCTCT 60.153 57.895 0.00 0.00 29.71 3.69
2358 5532 0.816825 ATGACATGCACGCCATCCTC 60.817 55.000 0.00 0.00 29.71 3.71
2359 5533 0.469494 TATGACATGCACGCCATCCT 59.531 50.000 0.00 0.00 29.71 3.24
2365 5539 1.819208 TGCCCTATGACATGCACGC 60.819 57.895 0.00 0.00 0.00 5.34
2366 5540 2.016961 GTGCCCTATGACATGCACG 58.983 57.895 12.09 0.00 43.83 5.34
2418 5592 3.547438 AAGGGGGTCTTTTTGGCAACAG 61.547 50.000 0.00 0.00 39.71 3.16
2432 5608 2.548547 GGGAGGAGCAAAAGGGGGT 61.549 63.158 0.00 0.00 0.00 4.95
2448 5628 5.360591 GTTGTATCTGTGGACTTCATAGGG 58.639 45.833 0.00 0.00 35.60 3.53
2478 5658 2.095059 GGATGAGTTGTTGTGTGATGCC 60.095 50.000 0.00 0.00 0.00 4.40
2507 5687 3.297736 AGAAGGATGTTAGGGTACTCGG 58.702 50.000 0.00 0.00 0.00 4.63
2519 5700 7.439381 TGTCGTTTTTAGAGTAAGAAGGATGT 58.561 34.615 0.00 0.00 32.06 3.06
2570 5754 3.829601 CCTGGCAGGTGTTTGGTAAAATA 59.170 43.478 25.74 0.00 0.00 1.40
2622 5807 2.213059 AGGTACCCTTTGCCCCCT 59.787 61.111 8.74 0.00 0.00 4.79
2670 5878 2.743636 TTGTCGGACATCCTCAACTC 57.256 50.000 12.26 0.00 0.00 3.01
2676 5893 0.175760 CGGACATTGTCGGACATCCT 59.824 55.000 20.99 5.07 35.37 3.24
2698 5915 2.162338 TTGTACCTCTCCGGTTGCCG 62.162 60.000 0.00 0.00 46.37 5.69
2702 5919 0.320697 GCTGTTGTACCTCTCCGGTT 59.679 55.000 0.00 0.00 46.37 4.44
2719 5939 1.388065 CCTTCTCCTCCGATGTCGCT 61.388 60.000 0.00 0.00 38.18 4.93
2723 5943 0.252284 ACACCCTTCTCCTCCGATGT 60.252 55.000 0.00 0.00 0.00 3.06
2725 5945 0.978146 CCACACCCTTCTCCTCCGAT 60.978 60.000 0.00 0.00 0.00 4.18
2726 5946 1.609501 CCACACCCTTCTCCTCCGA 60.610 63.158 0.00 0.00 0.00 4.55
2727 5947 0.978146 ATCCACACCCTTCTCCTCCG 60.978 60.000 0.00 0.00 0.00 4.63
2728 5948 0.543749 CATCCACACCCTTCTCCTCC 59.456 60.000 0.00 0.00 0.00 4.30
2733 5953 0.478072 TGTTGCATCCACACCCTTCT 59.522 50.000 0.00 0.00 0.00 2.85
2735 5955 0.106268 TGTGTTGCATCCACACCCTT 60.106 50.000 15.67 0.00 37.88 3.95
2742 5962 1.228831 CCCCCTTGTGTTGCATCCA 60.229 57.895 0.00 0.00 0.00 3.41
2751 5971 1.614241 CGTCCCTACTCCCCCTTGTG 61.614 65.000 0.00 0.00 0.00 3.33
2752 5972 1.305887 CGTCCCTACTCCCCCTTGT 60.306 63.158 0.00 0.00 0.00 3.16
2756 5976 1.001376 ACTTCGTCCCTACTCCCCC 59.999 63.158 0.00 0.00 0.00 5.40
2763 5983 2.893215 TCTCTTCCACTTCGTCCCTA 57.107 50.000 0.00 0.00 0.00 3.53
2775 5995 2.840651 TCTCCCAGTTCCATTCTCTTCC 59.159 50.000 0.00 0.00 0.00 3.46
2776 5996 3.772025 TCTCTCCCAGTTCCATTCTCTTC 59.228 47.826 0.00 0.00 0.00 2.87
2786 6006 1.978580 TCAAACCCTCTCTCCCAGTTC 59.021 52.381 0.00 0.00 0.00 3.01
2787 6007 1.981495 CTCAAACCCTCTCTCCCAGTT 59.019 52.381 0.00 0.00 0.00 3.16
2790 6010 1.132849 TCACTCAAACCCTCTCTCCCA 60.133 52.381 0.00 0.00 0.00 4.37
2791 6011 1.552792 CTCACTCAAACCCTCTCTCCC 59.447 57.143 0.00 0.00 0.00 4.30
2798 6018 1.831652 CTCGGCCTCACTCAAACCCT 61.832 60.000 0.00 0.00 0.00 4.34
2802 6022 1.841556 ACCCTCGGCCTCACTCAAA 60.842 57.895 0.00 0.00 0.00 2.69
2805 6025 2.584391 AACACCCTCGGCCTCACTC 61.584 63.158 0.00 0.00 0.00 3.51
2807 6027 2.358737 CAACACCCTCGGCCTCAC 60.359 66.667 0.00 0.00 0.00 3.51
2808 6028 3.636231 CCAACACCCTCGGCCTCA 61.636 66.667 0.00 0.00 0.00 3.86
2809 6029 3.316573 CTCCAACACCCTCGGCCTC 62.317 68.421 0.00 0.00 0.00 4.70
2810 6030 3.322466 CTCCAACACCCTCGGCCT 61.322 66.667 0.00 0.00 0.00 5.19
2815 6035 0.531200 CGTAGGACTCCAACACCCTC 59.469 60.000 0.00 0.00 0.00 4.30
2817 6037 0.037605 CACGTAGGACTCCAACACCC 60.038 60.000 0.00 0.00 0.00 4.61
2823 6043 3.066190 CCGCCACGTAGGACTCCA 61.066 66.667 8.04 0.00 41.22 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.