Multiple sequence alignment - TraesCS2D01G141900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G141900 chr2D 100.000 6551 0 0 1 6551 83544348 83537798 0.000000e+00 12098.0
1 TraesCS2D01G141900 chr2D 96.269 134 5 0 4629 4762 399721330 399721463 3.080000e-53 220.0
2 TraesCS2D01G141900 chr2D 95.620 137 6 0 4625 4761 502931425 502931289 3.080000e-53 220.0
3 TraesCS2D01G141900 chr2D 96.947 131 4 0 4631 4761 536091023 536091153 3.080000e-53 220.0
4 TraesCS2D01G141900 chr2D 95.370 108 4 1 6445 6551 607527064 607527171 3.140000e-38 171.0
5 TraesCS2D01G141900 chr2D 88.889 90 8 2 629 717 382456027 382455939 6.940000e-20 110.0
6 TraesCS2D01G141900 chr2B 95.405 4679 144 32 1 4636 135526266 135521616 0.000000e+00 7384.0
7 TraesCS2D01G141900 chr2B 95.484 1085 42 5 4758 5841 135521619 135520541 0.000000e+00 1725.0
8 TraesCS2D01G141900 chr2B 84.561 421 36 18 5831 6229 135520499 135520086 2.210000e-104 390.0
9 TraesCS2D01G141900 chr2B 95.327 107 5 0 6445 6551 297354226 297354120 3.140000e-38 171.0
10 TraesCS2D01G141900 chr2B 82.468 154 12 6 6300 6449 135520082 135519940 3.210000e-23 121.0
11 TraesCS2D01G141900 chr2A 95.507 1736 55 12 127 1849 84241316 84239591 0.000000e+00 2752.0
12 TraesCS2D01G141900 chr2A 94.188 1428 30 17 3231 4636 84237848 84236452 0.000000e+00 2128.0
13 TraesCS2D01G141900 chr2A 96.760 1111 35 1 1847 2957 84239511 84238402 0.000000e+00 1851.0
14 TraesCS2D01G141900 chr2A 96.529 605 20 1 4758 5362 84236455 84235852 0.000000e+00 1000.0
15 TraesCS2D01G141900 chr2A 93.643 409 24 2 5433 5841 84235854 84235448 1.560000e-170 610.0
16 TraesCS2D01G141900 chr2A 82.743 649 64 26 5831 6449 84235406 84234776 9.670000e-148 534.0
17 TraesCS2D01G141900 chr2A 93.966 116 5 2 3003 3118 84237971 84237858 2.430000e-39 174.0
18 TraesCS2D01G141900 chr2A 100.000 29 0 0 1 29 84241344 84241316 3.000000e-03 54.7
19 TraesCS2D01G141900 chr5D 82.650 1049 121 32 1562 2586 559621036 559622047 0.000000e+00 872.0
20 TraesCS2D01G141900 chr5D 82.786 639 86 12 4820 5448 559625931 559626555 3.450000e-152 549.0
21 TraesCS2D01G141900 chr5D 83.793 580 73 12 3079 3644 559624183 559624755 1.250000e-146 531.0
22 TraesCS2D01G141900 chr5D 97.692 130 3 0 4632 4761 393056404 393056275 2.380000e-54 224.0
23 TraesCS2D01G141900 chr5D 87.845 181 19 3 3810 3989 559624886 559625064 6.660000e-50 209.0
24 TraesCS2D01G141900 chr5D 95.327 107 5 0 6445 6551 60322041 60321935 3.140000e-38 171.0
25 TraesCS2D01G141900 chr5D 81.481 135 14 10 619 748 421993590 421993718 4.180000e-17 100.0
26 TraesCS2D01G141900 chr5D 91.176 68 6 0 2653 2720 559623381 559623448 6.990000e-15 93.5
27 TraesCS2D01G141900 chr5B 82.969 640 93 12 4817 5448 693907280 693907911 1.230000e-156 564.0
28 TraesCS2D01G141900 chr5B 82.633 547 73 11 3113 3644 693895630 693896169 1.290000e-126 464.0
29 TraesCS2D01G141900 chr5B 82.332 549 73 12 3113 3644 693884347 693884888 7.740000e-124 455.0
30 TraesCS2D01G141900 chr5B 88.259 247 19 7 2760 2999 693883554 693883797 2.990000e-73 287.0
31 TraesCS2D01G141900 chr5B 88.259 247 19 7 2760 2999 693894837 693895080 2.990000e-73 287.0
32 TraesCS2D01G141900 chr5B 84.772 197 26 4 2525 2720 693883371 693883564 1.860000e-45 195.0
33 TraesCS2D01G141900 chr5B 84.772 197 26 4 2525 2720 693894654 693894847 1.860000e-45 195.0
34 TraesCS2D01G141900 chr5B 91.367 139 8 4 30 166 693894098 693894234 3.120000e-43 187.0
35 TraesCS2D01G141900 chr5B 90.647 139 9 4 30 166 693882809 693882945 1.450000e-41 182.0
36 TraesCS2D01G141900 chrUn 82.633 547 73 11 3113 3644 357194212 357193673 1.290000e-126 464.0
37 TraesCS2D01G141900 chrUn 88.259 247 19 7 2760 2999 357195005 357194762 2.990000e-73 287.0
38 TraesCS2D01G141900 chrUn 84.772 197 26 4 2525 2720 357195188 357194995 1.860000e-45 195.0
39 TraesCS2D01G141900 chr3D 94.964 139 5 2 4624 4761 496172893 496172756 3.980000e-52 217.0
40 TraesCS2D01G141900 chr3B 94.326 141 6 2 4623 4761 655858571 655858711 1.430000e-51 215.0
41 TraesCS2D01G141900 chr7D 93.750 144 6 2 4632 4773 463266530 463266672 5.150000e-51 213.0
42 TraesCS2D01G141900 chr7D 90.110 91 5 4 628 716 1743875 1743963 1.490000e-21 115.0
43 TraesCS2D01G141900 chr7D 88.889 90 6 4 629 716 474349149 474349062 2.500000e-19 108.0
44 TraesCS2D01G141900 chr3A 93.706 143 8 1 4620 4761 348834588 348834446 5.150000e-51 213.0
45 TraesCS2D01G141900 chr4B 92.517 147 10 1 4625 4770 56414359 56414505 6.660000e-50 209.0
46 TraesCS2D01G141900 chr4B 95.327 107 5 0 6445 6551 511028942 511028836 3.140000e-38 171.0
47 TraesCS2D01G141900 chr6B 96.190 105 4 0 6447 6551 699425632 699425736 8.730000e-39 172.0
48 TraesCS2D01G141900 chr6B 95.327 107 5 0 6445 6551 472455363 472455469 3.140000e-38 171.0
49 TraesCS2D01G141900 chr1B 95.370 108 5 0 6444 6551 44171380 44171273 8.730000e-39 172.0
50 TraesCS2D01G141900 chr6D 97.959 98 2 0 6454 6551 245042205 245042108 3.140000e-38 171.0
51 TraesCS2D01G141900 chr5A 95.327 107 5 0 6445 6551 617788890 617788996 3.140000e-38 171.0
52 TraesCS2D01G141900 chr6A 87.234 94 9 3 629 720 55552639 55552547 3.230000e-18 104.0
53 TraesCS2D01G141900 chr6A 85.507 69 9 1 6270 6337 595607986 595607918 3.280000e-08 71.3
54 TraesCS2D01G141900 chr1A 87.778 90 9 2 628 716 578519954 578520042 3.230000e-18 104.0
55 TraesCS2D01G141900 chr1D 86.957 92 10 2 631 721 356862309 356862399 1.160000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G141900 chr2D 83537798 83544348 6550 True 12098.000000 12098 100.000000 1 6551 1 chr2D.!!$R1 6550
1 TraesCS2D01G141900 chr2B 135519940 135526266 6326 True 2405.000000 7384 89.479500 1 6449 4 chr2B.!!$R2 6448
2 TraesCS2D01G141900 chr2A 84234776 84241344 6568 True 1137.962500 2752 94.167000 1 6449 8 chr2A.!!$R1 6448
3 TraesCS2D01G141900 chr5D 559621036 559626555 5519 False 450.900000 872 85.650000 1562 5448 5 chr5D.!!$F2 3886
4 TraesCS2D01G141900 chr5B 693907280 693907911 631 False 564.000000 564 82.969000 4817 5448 1 chr5B.!!$F1 631
5 TraesCS2D01G141900 chr5B 693894098 693896169 2071 False 283.250000 464 86.757750 30 3644 4 chr5B.!!$F3 3614
6 TraesCS2D01G141900 chr5B 693882809 693884888 2079 False 279.750000 455 86.502500 30 3644 4 chr5B.!!$F2 3614
7 TraesCS2D01G141900 chrUn 357193673 357195188 1515 True 315.333333 464 85.221333 2525 3644 3 chrUn.!!$R1 1119


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 855 1.677217 GCCAGGAGCTGTTTCCTACTG 60.677 57.143 0.0 0.0 45.86 2.74 F
1341 1361 3.201353 TGCCACTAGTAAACACAAGCA 57.799 42.857 0.0 0.0 0.00 3.91 F
1506 1526 3.226346 TGTACACGAGGTATGTTGCTC 57.774 47.619 0.0 0.0 33.76 4.26 F
2495 2655 4.041567 TGGCAGACACTTTCTTCTCCATAA 59.958 41.667 0.0 0.0 28.96 1.90 F
2727 4166 5.499313 TGATTGGATTCTTGCTATGTGACA 58.501 37.500 0.0 0.0 0.00 3.58 F
4053 6100 0.037232 GCCTTCTCCTTACGTGCTGT 60.037 55.000 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2198 1.003118 GACATTAGCACCACCTGACCA 59.997 52.381 0.0 0.00 0.00 4.02 R
3070 4938 1.548719 GCCCCAATACCAACTGAAACC 59.451 52.381 0.0 0.00 0.00 3.27 R
3077 5041 3.893200 GGTTATTAGGCCCCAATACCAAC 59.107 47.826 0.0 1.43 0.00 3.77 R
4053 6100 0.330941 TGCACCTCCCACATGCAATA 59.669 50.000 0.0 0.00 45.96 1.90 R
4264 6312 1.219522 GCTTGACGCACAGTTACCGT 61.220 55.000 0.0 0.00 38.92 4.83 R
6048 8402 1.139256 TCTACCGTCCTGTTTGCAACA 59.861 47.619 0.0 0.00 39.52 3.33 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.493220 GCTTAACTTCATGCTACTTCTGCG 60.493 45.833 0.00 0.00 0.00 5.18
197 199 6.918022 GCTGTTTTGTTCTTTTGCTAGTATGT 59.082 34.615 0.00 0.00 0.00 2.29
245 254 5.670149 TGCAGCACAATTAAAATGTTTGG 57.330 34.783 0.00 0.00 0.00 3.28
441 454 7.496920 TCTTCATCCTTATGCAAGAGTAATGTG 59.503 37.037 0.00 0.00 33.20 3.21
443 456 6.539826 TCATCCTTATGCAAGAGTAATGTGTG 59.460 38.462 0.00 0.00 33.20 3.82
449 462 5.611796 TGCAAGAGTAATGTGTGATGTTC 57.388 39.130 0.00 0.00 0.00 3.18
511 524 6.957984 ATACGTGCTTTCATGCATCTATAG 57.042 37.500 0.00 0.00 45.23 1.31
555 568 4.022068 TGTGTTGATCAATTTCTTCTGGGC 60.022 41.667 12.12 0.00 0.00 5.36
556 569 4.219288 GTGTTGATCAATTTCTTCTGGGCT 59.781 41.667 12.12 0.00 0.00 5.19
604 617 8.692710 CCATAATGATTGATTTCCTATCATGGG 58.307 37.037 0.00 0.00 43.54 4.00
620 633 8.103305 CCTATCATGGGTGCTACTTTTATGTAT 58.897 37.037 0.00 0.00 0.00 2.29
624 637 7.717875 TCATGGGTGCTACTTTTATGTATTACC 59.282 37.037 0.00 0.00 32.39 2.85
813 826 8.725148 ACTTATTTGTGTTTGCAAATTTCAACA 58.275 25.926 16.21 11.83 43.97 3.33
842 855 1.677217 GCCAGGAGCTGTTTCCTACTG 60.677 57.143 0.00 0.00 45.86 2.74
885 898 7.872483 TGGCATAGATATATGGTTATGCATACG 59.128 37.037 22.34 0.00 46.29 3.06
1082 1099 9.308318 GCTTGAGGTTTGTTTACTTTATTTCAA 57.692 29.630 0.00 0.00 0.00 2.69
1277 1297 6.071896 AGTGCTTAAATTTCTTACTGAAGGCC 60.072 38.462 0.00 0.00 35.89 5.19
1278 1298 5.772672 TGCTTAAATTTCTTACTGAAGGCCA 59.227 36.000 5.01 0.00 35.89 5.36
1341 1361 3.201353 TGCCACTAGTAAACACAAGCA 57.799 42.857 0.00 0.00 0.00 3.91
1412 1432 3.386726 TCCTATCCATAGTTTGTCGGTGG 59.613 47.826 0.00 0.00 0.00 4.61
1484 1504 4.286032 CCCACCTAACTTAGCATAGGCATA 59.714 45.833 0.67 0.00 42.05 3.14
1506 1526 3.226346 TGTACACGAGGTATGTTGCTC 57.774 47.619 0.00 0.00 33.76 4.26
1951 2066 8.083828 ACATTGACTGGAGTGAGAATATAAGT 57.916 34.615 0.00 0.00 0.00 2.24
1973 2088 4.932200 GTGATTCACTTCAGGGTAAGAGTG 59.068 45.833 9.59 0.00 0.00 3.51
2073 2198 5.606348 TTTTTCCTGGCATTGTAAGTTGT 57.394 34.783 0.00 0.00 0.00 3.32
2495 2655 4.041567 TGGCAGACACTTTCTTCTCCATAA 59.958 41.667 0.00 0.00 28.96 1.90
2555 2716 6.408206 GGAAATAGTAGTAGACCATGGCAGTT 60.408 42.308 13.04 0.00 0.00 3.16
2683 4122 7.770897 GCCTCCAGTTTCTTCTAGAATTAATCA 59.229 37.037 5.44 0.00 33.67 2.57
2727 4166 5.499313 TGATTGGATTCTTGCTATGTGACA 58.501 37.500 0.00 0.00 0.00 3.58
2742 4181 5.900865 ATGTGACATGAATGTGCACATAA 57.099 34.783 31.55 22.68 45.88 1.90
3070 4938 7.162082 AGGAGACTACATTTCTGGTTGTTAAG 58.838 38.462 0.00 0.00 40.61 1.85
3077 5041 6.805713 ACATTTCTGGTTGTTAAGGTTTCAG 58.194 36.000 0.00 0.00 0.00 3.02
3148 5112 6.622833 CATGTATGCAGGATGTTGTATGAA 57.377 37.500 0.00 0.00 39.31 2.57
3380 5359 6.538381 TGAAGTCATCTGCGATTAAAGCAATA 59.462 34.615 9.71 3.03 44.67 1.90
4053 6100 0.037232 GCCTTCTCCTTACGTGCTGT 60.037 55.000 0.00 0.00 0.00 4.40
4129 6176 3.259123 AGAGCCAATAAGCTGTTTTTGGG 59.741 43.478 15.15 3.18 45.15 4.12
4209 6257 6.817140 CCTATTGTTAGAACTACCAGTTGGAC 59.183 42.308 4.92 0.00 38.80 4.02
4260 6308 1.055849 TTGGTTGGCTCACTGCTCTA 58.944 50.000 0.00 0.00 42.39 2.43
4264 6312 1.273606 GTTGGCTCACTGCTCTACTCA 59.726 52.381 0.00 0.00 42.39 3.41
4533 6628 4.705991 ACTAGTAAGCAAGTCCTCAGTACC 59.294 45.833 0.00 0.00 0.00 3.34
4637 6733 6.907961 GGGGGTTAGGAAATAATCAAGTACT 58.092 40.000 0.00 0.00 0.00 2.73
4638 6734 6.996879 GGGGGTTAGGAAATAATCAAGTACTC 59.003 42.308 0.00 0.00 0.00 2.59
4639 6735 6.996879 GGGGTTAGGAAATAATCAAGTACTCC 59.003 42.308 0.00 0.00 0.00 3.85
4640 6736 6.996879 GGGTTAGGAAATAATCAAGTACTCCC 59.003 42.308 0.00 0.00 0.00 4.30
4641 6737 7.147355 GGGTTAGGAAATAATCAAGTACTCCCT 60.147 40.741 0.00 0.00 0.00 4.20
4642 6738 7.932491 GGTTAGGAAATAATCAAGTACTCCCTC 59.068 40.741 0.00 0.00 0.00 4.30
4643 6739 6.502074 AGGAAATAATCAAGTACTCCCTCC 57.498 41.667 0.00 0.00 0.00 4.30
4644 6740 5.070580 AGGAAATAATCAAGTACTCCCTCCG 59.929 44.000 0.00 0.00 0.00 4.63
4645 6741 5.163332 GGAAATAATCAAGTACTCCCTCCGT 60.163 44.000 0.00 0.00 0.00 4.69
4646 6742 5.532664 AATAATCAAGTACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
4647 6743 1.777941 ATCAAGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4648 6744 0.324091 TCAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
4649 6745 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4650 6746 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4651 6747 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4652 6748 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4653 6749 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4654 6750 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4655 6751 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4656 6752 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4657 6753 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4658 6754 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4659 6755 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4660 6756 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4661 6757 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4662 6758 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4663 6759 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4664 6760 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
4665 6761 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
4666 6762 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
4667 6763 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
4668 6764 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
4669 6765 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
4670 6766 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
4671 6767 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
4672 6768 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
4694 6790 9.764363 TGTCTAAATATGGATGTATCAAGTCAC 57.236 33.333 0.00 0.00 0.00 3.67
4695 6791 8.916654 GTCTAAATATGGATGTATCAAGTCACG 58.083 37.037 0.00 0.00 0.00 4.35
4696 6792 8.638873 TCTAAATATGGATGTATCAAGTCACGT 58.361 33.333 0.00 0.00 0.00 4.49
4697 6793 9.261180 CTAAATATGGATGTATCAAGTCACGTT 57.739 33.333 0.00 0.00 0.00 3.99
4698 6794 8.506168 AAATATGGATGTATCAAGTCACGTTT 57.494 30.769 0.00 0.00 0.00 3.60
4699 6795 8.506168 AATATGGATGTATCAAGTCACGTTTT 57.494 30.769 0.00 0.00 0.00 2.43
4700 6796 9.607988 AATATGGATGTATCAAGTCACGTTTTA 57.392 29.630 0.00 0.00 0.00 1.52
4701 6797 6.961359 TGGATGTATCAAGTCACGTTTTAG 57.039 37.500 0.00 0.00 0.00 1.85
4702 6798 6.460781 TGGATGTATCAAGTCACGTTTTAGT 58.539 36.000 0.00 0.00 0.00 2.24
4703 6799 7.604549 TGGATGTATCAAGTCACGTTTTAGTA 58.395 34.615 0.00 0.00 0.00 1.82
4704 6800 8.255206 TGGATGTATCAAGTCACGTTTTAGTAT 58.745 33.333 0.00 0.00 0.00 2.12
4705 6801 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4715 6811 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
4716 6812 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
4717 6813 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
4718 6814 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
4735 6831 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
4736 6832 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
4737 6833 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
4738 6834 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
4739 6835 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
4740 6836 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
4752 6848 9.463443 AAATCTAAGACAAGAATTTTGAAACGG 57.537 29.630 7.18 0.00 0.00 4.44
4753 6849 7.795482 TCTAAGACAAGAATTTTGAAACGGA 57.205 32.000 7.18 0.00 0.00 4.69
4754 6850 7.861630 TCTAAGACAAGAATTTTGAAACGGAG 58.138 34.615 7.18 0.00 0.00 4.63
4755 6851 5.438761 AGACAAGAATTTTGAAACGGAGG 57.561 39.130 7.18 0.00 0.00 4.30
4756 6852 4.278419 AGACAAGAATTTTGAAACGGAGGG 59.722 41.667 7.18 0.00 0.00 4.30
4757 6853 4.211920 ACAAGAATTTTGAAACGGAGGGA 58.788 39.130 7.18 0.00 0.00 4.20
4758 6854 4.278419 ACAAGAATTTTGAAACGGAGGGAG 59.722 41.667 7.18 0.00 0.00 4.30
4759 6855 4.100279 AGAATTTTGAAACGGAGGGAGT 57.900 40.909 0.00 0.00 0.00 3.85
4760 6856 5.237236 AGAATTTTGAAACGGAGGGAGTA 57.763 39.130 0.00 0.00 0.00 2.59
4771 6867 7.178983 TGAAACGGAGGGAGTAGAACTTATTTA 59.821 37.037 0.00 0.00 0.00 1.40
5170 7433 1.347707 TGATGTCACTGAAGGTGGGAC 59.652 52.381 0.00 0.00 45.38 4.46
5171 7434 1.347707 GATGTCACTGAAGGTGGGACA 59.652 52.381 1.22 1.22 45.38 4.02
5259 7523 3.197766 TCATTCATCACCAGGACTACACC 59.802 47.826 0.00 0.00 0.00 4.16
5270 7534 4.424430 CTACACCAACGCGTGCGC 62.424 66.667 14.98 8.17 44.19 6.09
5378 7650 3.322369 CATGCATGTTTGTGTTCAGCAT 58.678 40.909 18.91 0.00 41.42 3.79
5476 7749 1.647545 CCAATGCTGGCGTCGAACAT 61.648 55.000 0.00 0.00 35.39 2.71
5638 7912 4.646572 ACATCCTCTGTTCAAGTCCTTTC 58.353 43.478 0.00 0.00 32.90 2.62
5643 7917 6.187682 TCCTCTGTTCAAGTCCTTTCTTTTT 58.812 36.000 0.00 0.00 0.00 1.94
5645 7919 6.095440 CCTCTGTTCAAGTCCTTTCTTTTTCA 59.905 38.462 0.00 0.00 0.00 2.69
5646 7920 7.362920 CCTCTGTTCAAGTCCTTTCTTTTTCAA 60.363 37.037 0.00 0.00 0.00 2.69
5647 7921 8.066612 TCTGTTCAAGTCCTTTCTTTTTCAAT 57.933 30.769 0.00 0.00 0.00 2.57
5653 7927 8.748412 TCAAGTCCTTTCTTTTTCAATCAAAGA 58.252 29.630 0.00 0.00 38.27 2.52
5665 7939 4.711721 TCAATCAAAGATTCTTTCGTGCG 58.288 39.130 8.71 0.00 0.00 5.34
5679 7953 4.435436 TGCGCTAGTGTGGAGCCG 62.435 66.667 9.73 0.00 36.53 5.52
5716 7990 7.318141 TGTTCAAGTAATAACTCCCTTAGTCG 58.682 38.462 0.00 0.00 37.50 4.18
5758 8032 3.056821 TCTTTACTGAGACCGGTCATGTG 60.057 47.826 35.00 22.66 33.18 3.21
5774 8048 2.093306 TGTGGGTAGCAATTGACTCG 57.907 50.000 10.34 0.00 0.00 4.18
5812 8086 6.128445 GCTCTTATACGCTATCATTTGCACAT 60.128 38.462 0.00 0.00 0.00 3.21
5814 8088 2.480224 ACGCTATCATTTGCACATGC 57.520 45.000 8.01 0.00 42.50 4.06
5841 8115 2.293519 TGGAGGTATGGATCCTGGTGAA 60.294 50.000 14.23 0.00 36.50 3.18
5842 8116 2.777692 GGAGGTATGGATCCTGGTGAAA 59.222 50.000 14.23 0.00 35.20 2.69
5844 8118 3.711704 GAGGTATGGATCCTGGTGAAAGA 59.288 47.826 14.23 0.00 35.20 2.52
5845 8119 4.111577 AGGTATGGATCCTGGTGAAAGAA 58.888 43.478 14.23 0.00 33.62 2.52
5846 8120 4.540099 AGGTATGGATCCTGGTGAAAGAAA 59.460 41.667 14.23 0.00 33.62 2.52
5851 8125 5.994250 TGGATCCTGGTGAAAGAAATAGAG 58.006 41.667 14.23 0.00 0.00 2.43
5941 8263 4.065321 AGATTTTATCTCCAGTCGGCAG 57.935 45.455 0.00 0.00 33.42 4.85
5972 8297 6.373216 TGTTAGTTGTTACAATATGGGTCTGC 59.627 38.462 0.00 0.00 0.00 4.26
5973 8298 4.917385 AGTTGTTACAATATGGGTCTGCA 58.083 39.130 0.00 0.00 0.00 4.41
5974 8299 5.509498 AGTTGTTACAATATGGGTCTGCAT 58.491 37.500 0.00 0.00 0.00 3.96
5975 8300 6.658849 AGTTGTTACAATATGGGTCTGCATA 58.341 36.000 0.00 0.00 0.00 3.14
5976 8301 6.767902 AGTTGTTACAATATGGGTCTGCATAG 59.232 38.462 0.00 0.00 0.00 2.23
6001 8332 5.304614 AGCTCAGTACTTAACCAAGTCTCAA 59.695 40.000 0.00 0.00 44.04 3.02
6003 8334 6.726490 TCAGTACTTAACCAAGTCTCAACT 57.274 37.500 0.00 0.00 44.04 3.16
6011 8342 2.766263 ACCAAGTCTCAACTGAGTGACA 59.234 45.455 6.61 0.00 42.60 3.58
6043 8397 0.971959 TGCTACGAACGGGGTGGTAT 60.972 55.000 0.00 0.00 0.00 2.73
6048 8402 0.177141 CGAACGGGGTGGTATGACAT 59.823 55.000 0.00 0.00 0.00 3.06
6050 8404 0.988832 AACGGGGTGGTATGACATGT 59.011 50.000 0.00 0.00 0.00 3.21
6056 8410 2.560542 GGGTGGTATGACATGTTGCAAA 59.439 45.455 0.00 0.00 0.00 3.68
6143 8497 0.248215 GTGCTGCATACAACGATGGC 60.248 55.000 5.27 0.00 0.00 4.40
6149 8503 1.333619 GCATACAACGATGGCGGAATT 59.666 47.619 0.00 0.00 43.17 2.17
6187 8541 2.351244 TGCTTCGAGCGATGAGGGT 61.351 57.895 9.56 0.00 46.26 4.34
6189 8543 1.227089 CTTCGAGCGATGAGGGTGG 60.227 63.158 0.04 0.00 0.00 4.61
6208 8562 1.400494 GGACACAACAACTGGTGACAC 59.600 52.381 0.00 0.00 38.38 3.67
6237 8591 3.196207 AACCAGCACCGGCAGATGT 62.196 57.895 0.00 0.00 44.61 3.06
6240 8594 1.968017 CAGCACCGGCAGATGTTGT 60.968 57.895 0.00 0.00 44.61 3.32
6246 8600 1.300971 CCGGCAGATGTTGTGACTGG 61.301 60.000 0.00 0.00 33.00 4.00
6248 8602 1.337728 CGGCAGATGTTGTGACTGGTA 60.338 52.381 0.00 0.00 33.00 3.25
6252 8606 3.433615 GCAGATGTTGTGACTGGTAAGAC 59.566 47.826 0.00 0.00 33.00 3.01
6277 8631 0.536460 GGTTCAAGCGGTGGGAAGAA 60.536 55.000 2.60 0.00 0.00 2.52
6289 8643 0.175989 GGGAAGAAGTGCTACGAGGG 59.824 60.000 0.00 0.00 0.00 4.30
6291 8645 0.460459 GAAGAAGTGCTACGAGGGCC 60.460 60.000 0.00 0.00 0.00 5.80
6292 8646 1.192146 AAGAAGTGCTACGAGGGCCA 61.192 55.000 6.18 0.00 0.00 5.36
6324 8678 2.685388 CTCACTCTAGCACGAATCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
6325 8679 3.291584 TCACTCTAGCACGAATCTCCAT 58.708 45.455 0.00 0.00 0.00 3.41
6338 8692 4.497006 CGAATCTCCATGCAAAGATCCAAC 60.497 45.833 9.31 3.45 31.03 3.77
6346 8700 2.811431 TGCAAAGATCCAACGGTTAGTG 59.189 45.455 0.00 0.00 0.00 2.74
6377 8732 2.809696 TGAGCTTAAGCAAACCCGTTAC 59.190 45.455 28.39 7.50 45.16 2.50
6396 8754 8.373220 CCCGTTACTATATTGTCTTCCCTAAAT 58.627 37.037 0.00 0.00 0.00 1.40
6397 8755 9.420551 CCGTTACTATATTGTCTTCCCTAAATC 57.579 37.037 0.00 0.00 0.00 2.17
6398 8756 9.420551 CGTTACTATATTGTCTTCCCTAAATCC 57.579 37.037 0.00 0.00 0.00 3.01
6399 8757 9.722184 GTTACTATATTGTCTTCCCTAAATCCC 57.278 37.037 0.00 0.00 0.00 3.85
6400 8758 9.684702 TTACTATATTGTCTTCCCTAAATCCCT 57.315 33.333 0.00 0.00 0.00 4.20
6402 8760 9.684702 ACTATATTGTCTTCCCTAAATCCCTAA 57.315 33.333 0.00 0.00 0.00 2.69
6449 8807 2.866762 CAAAATCAGCCGGCTCTAGTAC 59.133 50.000 30.29 0.00 0.00 2.73
6450 8808 2.074729 AATCAGCCGGCTCTAGTACT 57.925 50.000 30.29 0.00 0.00 2.73
6451 8809 2.074729 ATCAGCCGGCTCTAGTACTT 57.925 50.000 30.29 0.00 0.00 2.24
6452 8810 1.848652 TCAGCCGGCTCTAGTACTTT 58.151 50.000 30.29 0.00 0.00 2.66
6453 8811 1.749634 TCAGCCGGCTCTAGTACTTTC 59.250 52.381 30.29 0.00 0.00 2.62
6454 8812 1.751924 CAGCCGGCTCTAGTACTTTCT 59.248 52.381 30.29 0.00 0.00 2.52
6455 8813 2.025898 AGCCGGCTCTAGTACTTTCTC 58.974 52.381 27.08 0.00 0.00 2.87
6456 8814 1.067364 GCCGGCTCTAGTACTTTCTCC 59.933 57.143 22.15 0.00 0.00 3.71
6457 8815 2.657143 CCGGCTCTAGTACTTTCTCCT 58.343 52.381 0.00 0.00 0.00 3.69
6458 8816 3.025262 CCGGCTCTAGTACTTTCTCCTT 58.975 50.000 0.00 0.00 0.00 3.36
6459 8817 3.447944 CCGGCTCTAGTACTTTCTCCTTT 59.552 47.826 0.00 0.00 0.00 3.11
6460 8818 4.440387 CCGGCTCTAGTACTTTCTCCTTTC 60.440 50.000 0.00 0.00 0.00 2.62
6461 8819 4.440387 CGGCTCTAGTACTTTCTCCTTTCC 60.440 50.000 0.00 0.00 0.00 3.13
6462 8820 4.440387 GGCTCTAGTACTTTCTCCTTTCCG 60.440 50.000 0.00 0.00 0.00 4.30
6463 8821 4.440387 GCTCTAGTACTTTCTCCTTTCCGG 60.440 50.000 0.00 0.00 0.00 5.14
6464 8822 4.670765 TCTAGTACTTTCTCCTTTCCGGT 58.329 43.478 0.00 0.00 0.00 5.28
6465 8823 5.082425 TCTAGTACTTTCTCCTTTCCGGTT 58.918 41.667 0.00 0.00 0.00 4.44
6466 8824 4.701651 AGTACTTTCTCCTTTCCGGTTT 57.298 40.909 0.00 0.00 0.00 3.27
6467 8825 5.813513 AGTACTTTCTCCTTTCCGGTTTA 57.186 39.130 0.00 0.00 0.00 2.01
6468 8826 6.370186 AGTACTTTCTCCTTTCCGGTTTAT 57.630 37.500 0.00 0.00 0.00 1.40
6469 8827 7.486407 AGTACTTTCTCCTTTCCGGTTTATA 57.514 36.000 0.00 0.00 0.00 0.98
6470 8828 7.554211 AGTACTTTCTCCTTTCCGGTTTATAG 58.446 38.462 0.00 0.00 0.00 1.31
6471 8829 5.742063 ACTTTCTCCTTTCCGGTTTATAGG 58.258 41.667 0.00 2.55 0.00 2.57
6472 8830 4.765813 TTCTCCTTTCCGGTTTATAGGG 57.234 45.455 0.00 0.00 0.00 3.53
6473 8831 2.436911 TCTCCTTTCCGGTTTATAGGGC 59.563 50.000 0.00 0.00 0.00 5.19
6474 8832 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
6475 8833 2.436911 TCCTTTCCGGTTTATAGGGCTC 59.563 50.000 0.00 0.00 0.00 4.70
6476 8834 2.171870 CCTTTCCGGTTTATAGGGCTCA 59.828 50.000 0.00 0.00 0.00 4.26
6477 8835 3.371166 CCTTTCCGGTTTATAGGGCTCAA 60.371 47.826 0.00 0.00 0.00 3.02
6478 8836 4.461198 CTTTCCGGTTTATAGGGCTCAAT 58.539 43.478 0.00 0.00 0.00 2.57
6479 8837 4.513406 TTCCGGTTTATAGGGCTCAATT 57.487 40.909 0.00 0.00 0.00 2.32
6480 8838 4.081322 TCCGGTTTATAGGGCTCAATTC 57.919 45.455 0.00 0.00 0.00 2.17
6481 8839 3.456644 TCCGGTTTATAGGGCTCAATTCA 59.543 43.478 0.00 0.00 0.00 2.57
6482 8840 4.080243 TCCGGTTTATAGGGCTCAATTCAA 60.080 41.667 0.00 0.00 0.00 2.69
6483 8841 4.642885 CCGGTTTATAGGGCTCAATTCAAA 59.357 41.667 0.00 0.00 0.00 2.69
6484 8842 5.126384 CCGGTTTATAGGGCTCAATTCAAAA 59.874 40.000 0.00 0.00 0.00 2.44
6485 8843 6.350612 CCGGTTTATAGGGCTCAATTCAAAAA 60.351 38.462 0.00 0.00 0.00 1.94
6486 8844 7.264947 CGGTTTATAGGGCTCAATTCAAAAAT 58.735 34.615 0.00 0.00 0.00 1.82
6487 8845 7.435192 CGGTTTATAGGGCTCAATTCAAAAATC 59.565 37.037 0.00 0.00 0.00 2.17
6488 8846 8.478066 GGTTTATAGGGCTCAATTCAAAAATCT 58.522 33.333 0.00 0.00 0.00 2.40
6489 8847 9.521503 GTTTATAGGGCTCAATTCAAAAATCTC 57.478 33.333 0.00 0.00 0.00 2.75
6490 8848 8.821686 TTATAGGGCTCAATTCAAAAATCTCA 57.178 30.769 0.00 0.00 0.00 3.27
6491 8849 5.397142 AGGGCTCAATTCAAAAATCTCAC 57.603 39.130 0.00 0.00 0.00 3.51
6492 8850 4.221482 AGGGCTCAATTCAAAAATCTCACC 59.779 41.667 0.00 0.00 0.00 4.02
6493 8851 4.021192 GGGCTCAATTCAAAAATCTCACCA 60.021 41.667 0.00 0.00 0.00 4.17
6494 8852 5.511202 GGGCTCAATTCAAAAATCTCACCAA 60.511 40.000 0.00 0.00 0.00 3.67
6495 8853 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
6496 8854 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
6497 8855 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
6498 8856 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
6499 8857 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
6500 8858 6.729690 ATTCAAAAATCTCACCAACCAAGA 57.270 33.333 0.00 0.00 0.00 3.02
6501 8859 6.729690 TTCAAAAATCTCACCAACCAAGAT 57.270 33.333 0.00 0.00 0.00 2.40
6502 8860 7.831691 TTCAAAAATCTCACCAACCAAGATA 57.168 32.000 0.00 0.00 0.00 1.98
6503 8861 7.831691 TCAAAAATCTCACCAACCAAGATAA 57.168 32.000 0.00 0.00 0.00 1.75
6504 8862 8.243961 TCAAAAATCTCACCAACCAAGATAAA 57.756 30.769 0.00 0.00 0.00 1.40
6505 8863 8.869109 TCAAAAATCTCACCAACCAAGATAAAT 58.131 29.630 0.00 0.00 0.00 1.40
6506 8864 8.928733 CAAAAATCTCACCAACCAAGATAAATG 58.071 33.333 0.00 0.00 0.00 2.32
6507 8865 6.780457 AATCTCACCAACCAAGATAAATGG 57.220 37.500 0.00 0.00 43.84 3.16
6516 8874 4.970662 CCAAGATAAATGGTGAGTGGTG 57.029 45.455 0.00 0.00 33.08 4.17
6517 8875 3.696051 CCAAGATAAATGGTGAGTGGTGG 59.304 47.826 0.00 0.00 33.08 4.61
6518 8876 4.567537 CCAAGATAAATGGTGAGTGGTGGA 60.568 45.833 0.00 0.00 33.08 4.02
6519 8877 4.927267 AGATAAATGGTGAGTGGTGGAA 57.073 40.909 0.00 0.00 0.00 3.53
6520 8878 5.456921 AGATAAATGGTGAGTGGTGGAAT 57.543 39.130 0.00 0.00 0.00 3.01
6521 8879 6.575244 AGATAAATGGTGAGTGGTGGAATA 57.425 37.500 0.00 0.00 0.00 1.75
6522 8880 6.357367 AGATAAATGGTGAGTGGTGGAATAC 58.643 40.000 0.00 0.00 0.00 1.89
6523 8881 4.657814 AAATGGTGAGTGGTGGAATACT 57.342 40.909 0.00 0.00 0.00 2.12
6524 8882 4.657814 AATGGTGAGTGGTGGAATACTT 57.342 40.909 0.00 0.00 0.00 2.24
6525 8883 4.657814 ATGGTGAGTGGTGGAATACTTT 57.342 40.909 0.00 0.00 0.00 2.66
6526 8884 4.447138 TGGTGAGTGGTGGAATACTTTT 57.553 40.909 0.00 0.00 0.00 2.27
6527 8885 4.798882 TGGTGAGTGGTGGAATACTTTTT 58.201 39.130 0.00 0.00 0.00 1.94
6528 8886 4.582656 TGGTGAGTGGTGGAATACTTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
6529 8887 4.583073 GGTGAGTGGTGGAATACTTTTTGT 59.417 41.667 0.00 0.00 0.00 2.83
6530 8888 5.766174 GGTGAGTGGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 35.37 2.41
6531 8889 6.263617 GGTGAGTGGTGGAATACTTTTTGTAA 59.736 38.462 0.00 0.00 34.45 2.41
6532 8890 7.039993 GGTGAGTGGTGGAATACTTTTTGTAAT 60.040 37.037 0.00 0.00 34.45 1.89
6533 8891 8.357402 GTGAGTGGTGGAATACTTTTTGTAATT 58.643 33.333 0.00 0.00 34.45 1.40
6534 8892 8.919145 TGAGTGGTGGAATACTTTTTGTAATTT 58.081 29.630 0.00 0.00 34.45 1.82
6535 8893 9.191995 GAGTGGTGGAATACTTTTTGTAATTTG 57.808 33.333 0.00 0.00 34.45 2.32
6536 8894 7.655732 AGTGGTGGAATACTTTTTGTAATTTGC 59.344 33.333 0.00 0.00 34.45 3.68
6537 8895 7.439655 GTGGTGGAATACTTTTTGTAATTTGCA 59.560 33.333 0.00 0.00 34.45 4.08
6538 8896 7.987458 TGGTGGAATACTTTTTGTAATTTGCAA 59.013 29.630 0.00 0.00 34.45 4.08
6539 8897 8.831550 GGTGGAATACTTTTTGTAATTTGCAAA 58.168 29.630 15.44 15.44 34.45 3.68
6542 8900 9.381027 GGAATACTTTTTGTAATTTGCAAAAGC 57.619 29.630 17.19 9.70 43.70 3.51
6543 8901 9.928236 GAATACTTTTTGTAATTTGCAAAAGCA 57.072 25.926 17.19 12.17 43.70 3.91
6544 8902 9.715123 AATACTTTTTGTAATTTGCAAAAGCAC 57.285 25.926 17.19 13.97 43.70 4.40
6545 8903 6.550843 ACTTTTTGTAATTTGCAAAAGCACC 58.449 32.000 17.19 3.59 43.70 5.01
6546 8904 5.491635 TTTTGTAATTTGCAAAAGCACCC 57.508 34.783 17.19 2.20 39.83 4.61
6547 8905 3.827008 TGTAATTTGCAAAAGCACCCA 57.173 38.095 17.19 4.77 0.00 4.51
6548 8906 4.142609 TGTAATTTGCAAAAGCACCCAA 57.857 36.364 17.19 0.00 0.00 4.12
6549 8907 4.712476 TGTAATTTGCAAAAGCACCCAAT 58.288 34.783 17.19 0.00 0.00 3.16
6550 8908 5.128919 TGTAATTTGCAAAAGCACCCAATT 58.871 33.333 17.19 5.08 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 199 8.862325 AAGAACAATGATCACACCATAACTTA 57.138 30.769 0.00 0.00 0.00 2.24
245 254 2.744741 GCAGCAGGGAAGAAAGAAGTAC 59.255 50.000 0.00 0.00 0.00 2.73
352 361 8.953990 CAATTTTACGGACTTGAACAAAAGTAG 58.046 33.333 0.00 0.00 40.48 2.57
441 454 3.751175 TGGAGATTCCAAACGAACATCAC 59.249 43.478 0.00 0.00 45.00 3.06
555 568 4.084745 GCAAGTGCACAAAATGACAATGAG 60.085 41.667 21.04 0.00 41.59 2.90
556 569 3.803231 GCAAGTGCACAAAATGACAATGA 59.197 39.130 21.04 0.00 41.59 2.57
624 637 6.978674 TCTTTACAGAGGGAGTACCATATG 57.021 41.667 0.00 0.00 43.54 1.78
700 713 4.440808 TGATTGGTACTCCCTCCCTAAAA 58.559 43.478 0.00 0.00 0.00 1.52
705 718 2.408565 TGATGATTGGTACTCCCTCCC 58.591 52.381 0.00 0.00 0.00 4.30
813 826 3.859414 GCTCCTGGCTCCTGCGAT 61.859 66.667 0.00 0.00 40.82 4.58
1138 1158 9.693739 AAGGAATGTCACATTTTATGTATGGTA 57.306 29.630 4.04 0.00 42.70 3.25
1277 1297 1.137404 GGCATTACGCTTGGCACTG 59.863 57.895 0.00 0.00 41.91 3.66
1278 1298 1.002134 AGGCATTACGCTTGGCACT 60.002 52.632 8.69 0.00 41.77 4.40
1341 1361 7.332926 CAGCTTAAGTCTTGAACAGTGTCATAT 59.667 37.037 4.02 0.00 0.00 1.78
1412 1432 4.449743 TGAGTGCATGGTTTCGTAGTAAAC 59.550 41.667 0.00 0.00 38.39 2.01
1484 1504 4.081642 AGAGCAACATACCTCGTGTACAAT 60.082 41.667 0.00 0.00 33.39 2.71
1506 1526 0.536687 CCCATGGAGCCACATAGCAG 60.537 60.000 15.22 0.00 34.23 4.24
1534 1554 5.485353 TCCCACAAACAGAAGAGACAGATAT 59.515 40.000 0.00 0.00 0.00 1.63
1568 1589 3.885358 TCTCATACGACATGTATCGCAC 58.115 45.455 0.00 0.00 46.22 5.34
1820 1844 5.570973 TGACAACAAAACATCAAACTGAACG 59.429 36.000 0.00 0.00 0.00 3.95
1951 2066 4.593206 ACACTCTTACCCTGAAGTGAATCA 59.407 41.667 8.24 0.00 0.00 2.57
1973 2088 2.595463 TGGCACTGAGGCTGCAAC 60.595 61.111 0.50 0.00 44.55 4.17
2073 2198 1.003118 GACATTAGCACCACCTGACCA 59.997 52.381 0.00 0.00 0.00 4.02
2397 2522 2.543777 AGAGAAGTTTGGCGTGCTAA 57.456 45.000 0.00 0.00 0.00 3.09
2454 2580 2.778299 CCACAGCTGTAGCCAAACTTA 58.222 47.619 21.20 0.00 43.38 2.24
2481 2641 7.148755 CGCCACAAAATTTTATGGAGAAGAAAG 60.149 37.037 28.37 7.44 34.25 2.62
2539 2700 2.990066 GCTAACTGCCATGGTCTACT 57.010 50.000 14.67 0.00 35.15 2.57
2683 4122 5.008331 TCAGACTGTTCGGTACTAGACATT 58.992 41.667 1.59 0.00 0.00 2.71
2727 4166 5.472148 CCAACTTGTTATGTGCACATTCAT 58.528 37.500 35.45 16.59 37.76 2.57
3010 4878 9.474920 TGAAAATTTCACCTCACACATATTTTC 57.525 29.630 4.03 0.00 39.43 2.29
3070 4938 1.548719 GCCCCAATACCAACTGAAACC 59.451 52.381 0.00 0.00 0.00 3.27
3077 5041 3.893200 GGTTATTAGGCCCCAATACCAAC 59.107 47.826 0.00 1.43 0.00 3.77
3225 5191 6.469410 ACGGACTGTTCTGTAAATATTTGGA 58.531 36.000 11.05 4.01 39.79 3.53
3428 5407 8.905103 AAAGAATACAAAATATGGCGTTGTAC 57.095 30.769 0.00 0.00 39.75 2.90
3733 5728 5.630121 TGTTTGGAGGCAGAGATAAAGAAA 58.370 37.500 0.00 0.00 0.00 2.52
3800 5800 5.636123 TGAGTTAAGAAACTTAATGGGGCA 58.364 37.500 7.13 1.17 46.09 5.36
4053 6100 0.330941 TGCACCTCCCACATGCAATA 59.669 50.000 0.00 0.00 45.96 1.90
4129 6176 6.867662 ATGTATCTGCAGTAATGTTAAGGC 57.132 37.500 14.67 0.00 0.00 4.35
4209 6257 2.939103 GGTTCACTGATTTCTCCATCCG 59.061 50.000 0.00 0.00 0.00 4.18
4260 6308 1.737816 ACGCACAGTTACCGTGAGT 59.262 52.632 2.55 2.46 41.70 3.41
4264 6312 1.219522 GCTTGACGCACAGTTACCGT 61.220 55.000 0.00 0.00 38.92 4.83
4636 6732 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4637 6733 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4638 6734 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4639 6735 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4640 6736 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4641 6737 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4642 6738 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
4643 6739 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
4644 6740 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
4645 6741 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
4646 6742 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
4668 6764 9.764363 GTGACTTGATACATCCATATTTAGACA 57.236 33.333 0.00 0.00 0.00 3.41
4669 6765 8.916654 CGTGACTTGATACATCCATATTTAGAC 58.083 37.037 0.00 0.00 0.00 2.59
4670 6766 8.638873 ACGTGACTTGATACATCCATATTTAGA 58.361 33.333 0.00 0.00 0.00 2.10
4671 6767 8.818141 ACGTGACTTGATACATCCATATTTAG 57.182 34.615 0.00 0.00 0.00 1.85
4672 6768 9.607988 AAACGTGACTTGATACATCCATATTTA 57.392 29.630 0.00 0.00 0.00 1.40
4673 6769 8.506168 AAACGTGACTTGATACATCCATATTT 57.494 30.769 0.00 0.00 0.00 1.40
4674 6770 8.506168 AAAACGTGACTTGATACATCCATATT 57.494 30.769 0.00 0.00 0.00 1.28
4675 6771 9.261180 CTAAAACGTGACTTGATACATCCATAT 57.739 33.333 0.00 0.00 0.00 1.78
4676 6772 8.255206 ACTAAAACGTGACTTGATACATCCATA 58.745 33.333 0.00 0.00 0.00 2.74
4677 6773 7.103641 ACTAAAACGTGACTTGATACATCCAT 58.896 34.615 0.00 0.00 0.00 3.41
4678 6774 6.460781 ACTAAAACGTGACTTGATACATCCA 58.539 36.000 0.00 0.00 0.00 3.41
4679 6775 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4689 6785 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
4690 6786 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
4691 6787 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
4692 6788 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
4709 6805 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
4710 6806 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
4711 6807 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
4712 6808 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
4713 6809 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
4714 6810 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
4726 6822 9.463443 CCGTTTCAAAATTCTTGTCTTAGATTT 57.537 29.630 0.00 0.00 0.00 2.17
4727 6823 8.846211 TCCGTTTCAAAATTCTTGTCTTAGATT 58.154 29.630 0.00 0.00 0.00 2.40
4728 6824 8.391075 TCCGTTTCAAAATTCTTGTCTTAGAT 57.609 30.769 0.00 0.00 0.00 1.98
4729 6825 7.041372 CCTCCGTTTCAAAATTCTTGTCTTAGA 60.041 37.037 0.00 0.00 0.00 2.10
4730 6826 7.078228 CCTCCGTTTCAAAATTCTTGTCTTAG 58.922 38.462 0.00 0.00 0.00 2.18
4731 6827 6.016610 CCCTCCGTTTCAAAATTCTTGTCTTA 60.017 38.462 0.00 0.00 0.00 2.10
4732 6828 5.221244 CCCTCCGTTTCAAAATTCTTGTCTT 60.221 40.000 0.00 0.00 0.00 3.01
4733 6829 4.278419 CCCTCCGTTTCAAAATTCTTGTCT 59.722 41.667 0.00 0.00 0.00 3.41
4734 6830 4.277423 TCCCTCCGTTTCAAAATTCTTGTC 59.723 41.667 0.00 0.00 0.00 3.18
4735 6831 4.211920 TCCCTCCGTTTCAAAATTCTTGT 58.788 39.130 0.00 0.00 0.00 3.16
4736 6832 4.278419 ACTCCCTCCGTTTCAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
4737 6833 4.470602 ACTCCCTCCGTTTCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
4738 6834 4.100279 ACTCCCTCCGTTTCAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
4739 6835 5.243207 TCTACTCCCTCCGTTTCAAAATTC 58.757 41.667 0.00 0.00 0.00 2.17
4740 6836 5.237236 TCTACTCCCTCCGTTTCAAAATT 57.763 39.130 0.00 0.00 0.00 1.82
4741 6837 4.903045 TCTACTCCCTCCGTTTCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
4742 6838 4.102054 AGTTCTACTCCCTCCGTTTCAAAA 59.898 41.667 0.00 0.00 0.00 2.44
4743 6839 3.644738 AGTTCTACTCCCTCCGTTTCAAA 59.355 43.478 0.00 0.00 0.00 2.69
4744 6840 3.236896 AGTTCTACTCCCTCCGTTTCAA 58.763 45.455 0.00 0.00 0.00 2.69
4745 6841 2.885616 AGTTCTACTCCCTCCGTTTCA 58.114 47.619 0.00 0.00 0.00 2.69
4746 6842 3.957591 AAGTTCTACTCCCTCCGTTTC 57.042 47.619 0.00 0.00 0.00 2.78
4747 6843 6.370186 AAATAAGTTCTACTCCCTCCGTTT 57.630 37.500 0.00 0.00 0.00 3.60
4748 6844 6.666980 ACTAAATAAGTTCTACTCCCTCCGTT 59.333 38.462 0.00 0.00 33.35 4.44
4749 6845 6.193504 ACTAAATAAGTTCTACTCCCTCCGT 58.806 40.000 0.00 0.00 33.35 4.69
4750 6846 6.712179 ACTAAATAAGTTCTACTCCCTCCG 57.288 41.667 0.00 0.00 33.35 4.63
4771 6867 6.803642 ACTGAAGTAAAGTCAACTACGAACT 58.196 36.000 0.00 0.00 0.00 3.01
4774 6870 8.355169 ACAATACTGAAGTAAAGTCAACTACGA 58.645 33.333 0.00 0.00 33.76 3.43
4777 6873 8.867097 AGGACAATACTGAAGTAAAGTCAACTA 58.133 33.333 19.01 0.00 38.74 2.24
4779 6875 7.964604 AGGACAATACTGAAGTAAAGTCAAC 57.035 36.000 19.01 9.15 38.74 3.18
5170 7433 1.761784 AGTAGCCAGCAGGATCTTCTG 59.238 52.381 0.00 0.00 36.89 3.02
5171 7434 2.173126 AGTAGCCAGCAGGATCTTCT 57.827 50.000 0.00 0.00 36.89 2.85
5223 7487 3.438216 TGAATGATGGCCTTGTGAAGA 57.562 42.857 3.32 0.00 0.00 2.87
5224 7488 3.697542 TGATGAATGATGGCCTTGTGAAG 59.302 43.478 3.32 0.00 0.00 3.02
5270 7534 2.358957 TGAATCCATCAAGAAGCACCG 58.641 47.619 0.00 0.00 34.30 4.94
5467 7740 1.804151 ACCCACAATCAATGTTCGACG 59.196 47.619 0.00 0.00 41.46 5.12
5468 7741 2.552315 ACACCCACAATCAATGTTCGAC 59.448 45.455 0.00 0.00 41.46 4.20
5476 7749 1.612950 GCACATCACACCCACAATCAA 59.387 47.619 0.00 0.00 0.00 2.57
5625 7899 8.702163 TTGATTGAAAAAGAAAGGACTTGAAC 57.298 30.769 0.00 0.00 0.00 3.18
5638 7912 8.000435 GCACGAAAGAATCTTTGATTGAAAAAG 59.000 33.333 13.55 0.00 36.22 2.27
5643 7917 4.711721 CGCACGAAAGAATCTTTGATTGA 58.288 39.130 13.55 0.00 0.00 2.57
5645 7919 3.189287 AGCGCACGAAAGAATCTTTGATT 59.811 39.130 13.55 0.00 0.00 2.57
5646 7920 2.744202 AGCGCACGAAAGAATCTTTGAT 59.256 40.909 13.55 0.00 0.00 2.57
5647 7921 2.143122 AGCGCACGAAAGAATCTTTGA 58.857 42.857 13.55 0.00 0.00 2.69
5653 7927 1.726791 CACACTAGCGCACGAAAGAAT 59.273 47.619 11.47 0.00 0.00 2.40
5679 7953 3.969250 TTGAACATCCCGAGGGCGC 62.969 63.158 0.00 0.00 35.83 6.53
5716 7990 5.886960 AGATAACAAACTGCACTTCCATC 57.113 39.130 0.00 0.00 0.00 3.51
5758 8032 4.965119 AAATTCGAGTCAATTGCTACCC 57.035 40.909 0.00 0.00 0.00 3.69
5812 8086 5.367644 CAGGATCCATACCTCCATATATGCA 59.632 44.000 15.82 0.00 35.35 3.96
5814 8088 5.907662 ACCAGGATCCATACCTCCATATATG 59.092 44.000 15.82 5.68 35.35 1.78
5882 8203 2.980246 AGGAAAGGGAAAACTGGAGG 57.020 50.000 0.00 0.00 0.00 4.30
5894 8216 6.359804 TCTGAATGGAATGTCATAGGAAAGG 58.640 40.000 0.00 0.00 0.00 3.11
5941 8263 6.910433 CCATATTGTAACAACTAACAATCCGC 59.090 38.462 4.11 0.00 43.44 5.54
5972 8297 6.868622 ACTTGGTTAAGTACTGAGCTCTATG 58.131 40.000 16.19 7.77 45.07 2.23
5973 8298 6.893005 AGACTTGGTTAAGTACTGAGCTCTAT 59.107 38.462 16.19 5.38 46.79 1.98
5974 8299 6.246919 AGACTTGGTTAAGTACTGAGCTCTA 58.753 40.000 16.19 0.00 46.79 2.43
5975 8300 5.081032 AGACTTGGTTAAGTACTGAGCTCT 58.919 41.667 16.19 0.00 46.79 4.09
5976 8301 5.047943 TGAGACTTGGTTAAGTACTGAGCTC 60.048 44.000 6.82 6.82 46.79 4.09
5979 8304 6.642950 CAGTTGAGACTTGGTTAAGTACTGAG 59.357 42.308 12.21 0.00 46.79 3.35
5980 8305 6.322969 TCAGTTGAGACTTGGTTAAGTACTGA 59.677 38.462 14.64 14.64 46.36 3.41
5981 8306 6.513180 TCAGTTGAGACTTGGTTAAGTACTG 58.487 40.000 0.00 11.68 46.79 2.74
5983 8308 6.421202 CACTCAGTTGAGACTTGGTTAAGTAC 59.579 42.308 15.63 0.00 46.79 2.73
6001 8332 2.515854 ACTACGGTGATGTCACTCAGT 58.484 47.619 12.43 11.95 45.73 3.41
6003 8334 2.626266 ACAACTACGGTGATGTCACTCA 59.374 45.455 12.43 0.00 45.73 3.41
6043 8397 1.333308 CGTCCTGTTTGCAACATGTCA 59.667 47.619 0.00 0.00 41.26 3.58
6048 8402 1.139256 TCTACCGTCCTGTTTGCAACA 59.861 47.619 0.00 0.00 39.52 3.33
6050 8404 1.870580 CGTCTACCGTCCTGTTTGCAA 60.871 52.381 0.00 0.00 0.00 4.08
6056 8410 1.364626 CGTAGCGTCTACCGTCCTGT 61.365 60.000 10.20 0.00 39.32 4.00
6057 8411 1.086067 TCGTAGCGTCTACCGTCCTG 61.086 60.000 10.20 0.00 39.32 3.86
6058 8412 0.809241 CTCGTAGCGTCTACCGTCCT 60.809 60.000 10.20 0.00 39.32 3.85
6062 8416 0.935898 ATGTCTCGTAGCGTCTACCG 59.064 55.000 10.20 6.86 40.40 4.02
6143 8497 0.724549 TCCGTCATTCGCAAATTCCG 59.275 50.000 0.00 0.00 38.35 4.30
6149 8503 1.876799 ACATTGTTCCGTCATTCGCAA 59.123 42.857 0.00 0.00 38.35 4.85
6187 8541 1.003696 TGTCACCAGTTGTTGTGTCCA 59.996 47.619 0.00 0.00 34.14 4.02
6189 8543 1.062002 CGTGTCACCAGTTGTTGTGTC 59.938 52.381 0.00 0.00 34.14 3.67
6208 8562 2.177531 GCTGGTTGCAGCATGTCG 59.822 61.111 2.05 0.00 46.73 4.35
6230 8584 3.433615 GTCTTACCAGTCACAACATCTGC 59.566 47.826 0.00 0.00 0.00 4.26
6232 8586 3.572682 TCGTCTTACCAGTCACAACATCT 59.427 43.478 0.00 0.00 0.00 2.90
6237 8591 3.491964 CCACTTCGTCTTACCAGTCACAA 60.492 47.826 0.00 0.00 0.00 3.33
6240 8594 2.313317 ACCACTTCGTCTTACCAGTCA 58.687 47.619 0.00 0.00 0.00 3.41
6246 8600 2.155155 CGCTTGAACCACTTCGTCTTAC 59.845 50.000 0.00 0.00 0.00 2.34
6248 8602 1.217882 CGCTTGAACCACTTCGTCTT 58.782 50.000 0.00 0.00 0.00 3.01
6252 8606 1.569493 CACCGCTTGAACCACTTCG 59.431 57.895 0.00 0.00 0.00 3.79
6259 8613 0.875059 CTTCTTCCCACCGCTTGAAC 59.125 55.000 0.00 0.00 0.00 3.18
6261 8615 0.250295 CACTTCTTCCCACCGCTTGA 60.250 55.000 0.00 0.00 0.00 3.02
6277 8631 0.392998 CAAATGGCCCTCGTAGCACT 60.393 55.000 0.00 0.00 0.00 4.40
6289 8643 0.593128 AGTGAGCAACGTCAAATGGC 59.407 50.000 0.00 0.00 0.00 4.40
6291 8645 3.181526 GCTAGAGTGAGCAACGTCAAATG 60.182 47.826 0.00 0.00 42.36 2.32
6292 8646 2.996621 GCTAGAGTGAGCAACGTCAAAT 59.003 45.455 0.00 0.00 42.36 2.32
6324 8678 3.440173 CACTAACCGTTGGATCTTTGCAT 59.560 43.478 1.05 0.00 0.00 3.96
6325 8679 2.811431 CACTAACCGTTGGATCTTTGCA 59.189 45.455 1.05 0.00 0.00 4.08
6338 8692 1.200716 TCAGTCGGCTTACACTAACCG 59.799 52.381 0.00 0.00 46.97 4.44
6363 8718 6.412214 AGACAATATAGTAACGGGTTTGCTT 58.588 36.000 0.00 0.00 31.68 3.91
6449 8807 5.123936 CCCTATAAACCGGAAAGGAGAAAG 58.876 45.833 9.46 0.00 45.00 2.62
6450 8808 4.627013 GCCCTATAAACCGGAAAGGAGAAA 60.627 45.833 9.46 0.00 45.00 2.52
6451 8809 3.118149 GCCCTATAAACCGGAAAGGAGAA 60.118 47.826 9.46 0.00 45.00 2.87
6452 8810 2.436911 GCCCTATAAACCGGAAAGGAGA 59.563 50.000 9.46 0.00 45.00 3.71
6453 8811 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
6454 8812 2.436911 GAGCCCTATAAACCGGAAAGGA 59.563 50.000 9.46 0.00 45.00 3.36
6456 8814 3.553828 TGAGCCCTATAAACCGGAAAG 57.446 47.619 9.46 0.00 0.00 2.62
6457 8815 4.513406 ATTGAGCCCTATAAACCGGAAA 57.487 40.909 9.46 0.00 0.00 3.13
6458 8816 4.080243 TGAATTGAGCCCTATAAACCGGAA 60.080 41.667 9.46 0.00 0.00 4.30
6459 8817 3.456644 TGAATTGAGCCCTATAAACCGGA 59.543 43.478 9.46 0.00 0.00 5.14
6460 8818 3.815809 TGAATTGAGCCCTATAAACCGG 58.184 45.455 0.00 0.00 0.00 5.28
6461 8819 5.828299 TTTGAATTGAGCCCTATAAACCG 57.172 39.130 0.00 0.00 0.00 4.44
6462 8820 8.478066 AGATTTTTGAATTGAGCCCTATAAACC 58.522 33.333 0.00 0.00 0.00 3.27
6463 8821 9.521503 GAGATTTTTGAATTGAGCCCTATAAAC 57.478 33.333 0.00 0.00 0.00 2.01
6464 8822 9.253832 TGAGATTTTTGAATTGAGCCCTATAAA 57.746 29.630 0.00 0.00 0.00 1.40
6465 8823 8.686334 GTGAGATTTTTGAATTGAGCCCTATAA 58.314 33.333 0.00 0.00 0.00 0.98
6466 8824 7.285401 GGTGAGATTTTTGAATTGAGCCCTATA 59.715 37.037 0.00 0.00 0.00 1.31
6467 8825 6.097412 GGTGAGATTTTTGAATTGAGCCCTAT 59.903 38.462 0.00 0.00 0.00 2.57
6468 8826 5.418840 GGTGAGATTTTTGAATTGAGCCCTA 59.581 40.000 0.00 0.00 0.00 3.53
6469 8827 4.221482 GGTGAGATTTTTGAATTGAGCCCT 59.779 41.667 0.00 0.00 0.00 5.19
6470 8828 4.021192 TGGTGAGATTTTTGAATTGAGCCC 60.021 41.667 0.00 0.00 0.00 5.19
6471 8829 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
6472 8830 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
6473 8831 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
6474 8832 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
6475 8833 6.985645 TCTTGGTTGGTGAGATTTTTGAATTG 59.014 34.615 0.00 0.00 0.00 2.32
6476 8834 7.123355 TCTTGGTTGGTGAGATTTTTGAATT 57.877 32.000 0.00 0.00 0.00 2.17
6477 8835 6.729690 TCTTGGTTGGTGAGATTTTTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
6478 8836 6.729690 ATCTTGGTTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
6479 8837 7.831691 TTATCTTGGTTGGTGAGATTTTTGA 57.168 32.000 0.00 0.00 32.68 2.69
6480 8838 8.928733 CATTTATCTTGGTTGGTGAGATTTTTG 58.071 33.333 0.00 0.00 32.68 2.44
6481 8839 8.096414 CCATTTATCTTGGTTGGTGAGATTTTT 58.904 33.333 0.00 0.00 32.68 1.94
6482 8840 7.235399 ACCATTTATCTTGGTTGGTGAGATTTT 59.765 33.333 0.00 0.00 45.19 1.82
6483 8841 6.725834 ACCATTTATCTTGGTTGGTGAGATTT 59.274 34.615 0.00 0.00 45.19 2.17
6484 8842 6.256053 ACCATTTATCTTGGTTGGTGAGATT 58.744 36.000 0.00 0.00 45.19 2.40
6485 8843 5.831103 ACCATTTATCTTGGTTGGTGAGAT 58.169 37.500 0.00 0.00 45.19 2.75
6486 8844 5.255397 ACCATTTATCTTGGTTGGTGAGA 57.745 39.130 0.00 0.00 45.19 3.27
6490 8848 4.766891 CACTCACCATTTATCTTGGTTGGT 59.233 41.667 0.00 0.00 45.19 3.67
6491 8849 4.158394 CCACTCACCATTTATCTTGGTTGG 59.842 45.833 0.00 0.00 45.19 3.77
6492 8850 4.766891 ACCACTCACCATTTATCTTGGTTG 59.233 41.667 0.00 0.00 45.19 3.77
6493 8851 4.766891 CACCACTCACCATTTATCTTGGTT 59.233 41.667 0.00 0.00 45.19 3.67
6495 8853 3.696051 CCACCACTCACCATTTATCTTGG 59.304 47.826 0.00 0.00 40.26 3.61
6496 8854 4.588899 TCCACCACTCACCATTTATCTTG 58.411 43.478 0.00 0.00 0.00 3.02
6497 8855 4.927267 TCCACCACTCACCATTTATCTT 57.073 40.909 0.00 0.00 0.00 2.40
6498 8856 4.927267 TTCCACCACTCACCATTTATCT 57.073 40.909 0.00 0.00 0.00 1.98
6499 8857 6.357367 AGTATTCCACCACTCACCATTTATC 58.643 40.000 0.00 0.00 0.00 1.75
6500 8858 6.327386 AGTATTCCACCACTCACCATTTAT 57.673 37.500 0.00 0.00 0.00 1.40
6501 8859 5.772393 AGTATTCCACCACTCACCATTTA 57.228 39.130 0.00 0.00 0.00 1.40
6502 8860 4.657814 AGTATTCCACCACTCACCATTT 57.342 40.909 0.00 0.00 0.00 2.32
6503 8861 4.657814 AAGTATTCCACCACTCACCATT 57.342 40.909 0.00 0.00 0.00 3.16
6504 8862 4.657814 AAAGTATTCCACCACTCACCAT 57.342 40.909 0.00 0.00 0.00 3.55
6505 8863 4.447138 AAAAGTATTCCACCACTCACCA 57.553 40.909 0.00 0.00 0.00 4.17
6506 8864 4.583073 ACAAAAAGTATTCCACCACTCACC 59.417 41.667 0.00 0.00 0.00 4.02
6507 8865 5.767816 ACAAAAAGTATTCCACCACTCAC 57.232 39.130 0.00 0.00 0.00 3.51
6508 8866 8.472007 AATTACAAAAAGTATTCCACCACTCA 57.528 30.769 0.00 0.00 31.53 3.41
6509 8867 9.191995 CAAATTACAAAAAGTATTCCACCACTC 57.808 33.333 0.00 0.00 31.53 3.51
6510 8868 7.655732 GCAAATTACAAAAAGTATTCCACCACT 59.344 33.333 0.00 0.00 31.53 4.00
6511 8869 7.439655 TGCAAATTACAAAAAGTATTCCACCAC 59.560 33.333 0.00 0.00 31.53 4.16
6512 8870 7.500992 TGCAAATTACAAAAAGTATTCCACCA 58.499 30.769 0.00 0.00 31.53 4.17
6513 8871 7.954788 TGCAAATTACAAAAAGTATTCCACC 57.045 32.000 0.00 0.00 31.53 4.61
6516 8874 9.381027 GCTTTTGCAAATTACAAAAAGTATTCC 57.619 29.630 13.65 0.00 44.07 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.