Multiple sequence alignment - TraesCS2D01G140500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G140500 chr2D 100.000 4220 0 0 1 4220 82838283 82834064 0.000000e+00 7793.0
1 TraesCS2D01G140500 chr2D 92.156 2384 157 16 905 3261 82875022 82872642 0.000000e+00 3339.0
2 TraesCS2D01G140500 chr2D 90.430 2351 179 16 871 3204 82656622 82654301 0.000000e+00 3053.0
3 TraesCS2D01G140500 chr2D 76.754 2280 455 51 961 3190 82336172 82333918 0.000000e+00 1205.0
4 TraesCS2D01G140500 chr2D 76.307 2410 459 74 860 3211 82894381 82892026 0.000000e+00 1184.0
5 TraesCS2D01G140500 chr2D 93.733 750 34 6 3259 4007 82872607 82871870 0.000000e+00 1112.0
6 TraesCS2D01G140500 chr2D 87.963 756 67 12 3261 4015 82654190 82653458 0.000000e+00 870.0
7 TraesCS2D01G140500 chr2D 84.906 636 80 10 3258 3880 82891918 82891286 2.770000e-176 628.0
8 TraesCS2D01G140500 chr2D 86.200 500 69 0 3374 3873 82645654 82645155 3.710000e-150 542.0
9 TraesCS2D01G140500 chr2A 91.592 2462 170 13 837 3272 83587788 83585338 0.000000e+00 3365.0
10 TraesCS2D01G140500 chr2A 83.153 2315 325 41 903 3190 83203118 83200842 0.000000e+00 2054.0
11 TraesCS2D01G140500 chr2A 81.558 2375 369 40 857 3190 83430389 83428043 0.000000e+00 1895.0
12 TraesCS2D01G140500 chr2A 80.771 2387 383 56 857 3190 83422782 83420419 0.000000e+00 1796.0
13 TraesCS2D01G140500 chr2A 78.834 2230 412 42 1000 3190 83642431 83640223 0.000000e+00 1448.0
14 TraesCS2D01G140500 chr2A 76.393 2279 462 52 961 3188 83017847 83015594 0.000000e+00 1158.0
15 TraesCS2D01G140500 chr2A 90.132 760 61 9 3258 4015 83585317 83584570 0.000000e+00 976.0
16 TraesCS2D01G140500 chr2A 77.566 1471 285 30 1354 2798 83469596 83468145 0.000000e+00 846.0
17 TraesCS2D01G140500 chr2A 86.355 535 71 2 3340 3873 83200628 83200095 2.190000e-162 582.0
18 TraesCS2D01G140500 chr2A 86.233 523 72 0 3351 3873 83420206 83419684 6.120000e-158 568.0
19 TraesCS2D01G140500 chr2A 85.311 531 70 5 3341 3863 83640026 83639496 3.710000e-150 542.0
20 TraesCS2D01G140500 chr2A 81.726 197 25 7 20 214 370497200 370497387 2.030000e-33 154.0
21 TraesCS2D01G140500 chr2A 87.156 109 13 1 628 736 83588008 83587901 5.730000e-24 122.0
22 TraesCS2D01G140500 chr2A 87.671 73 9 0 213 285 83590324 83590252 7.520000e-13 86.1
23 TraesCS2D01G140500 chr2B 83.432 2360 341 26 858 3190 134550966 134548630 0.000000e+00 2146.0
24 TraesCS2D01G140500 chr2B 82.914 2306 324 40 905 3180 134513460 134511195 0.000000e+00 2012.0
25 TraesCS2D01G140500 chr2B 77.552 1871 371 35 1354 3189 134479762 134477906 0.000000e+00 1083.0
26 TraesCS2D01G140500 chr2B 80.605 1191 201 22 1714 2890 134569487 134568313 0.000000e+00 893.0
27 TraesCS2D01G140500 chr2B 89.463 484 51 0 3344 3827 134600941 134600458 2.790000e-171 612.0
28 TraesCS2D01G140500 chr7D 99.034 207 2 0 4014 4220 599724184 599723978 5.150000e-99 372.0
29 TraesCS2D01G140500 chr7D 98.049 205 4 0 4016 4220 199047681 199047885 1.440000e-94 357.0
30 TraesCS2D01G140500 chr7D 82.741 197 23 7 20 214 19330831 19331018 9.390000e-37 165.0
31 TraesCS2D01G140500 chr3D 97.596 208 5 0 4011 4218 508163744 508163537 1.440000e-94 357.0
32 TraesCS2D01G140500 chr3D 96.651 209 7 0 4012 4220 582737311 582737519 8.680000e-92 348.0
33 TraesCS2D01G140500 chr1D 97.561 205 5 0 4016 4220 439167288 439167084 6.710000e-93 351.0
34 TraesCS2D01G140500 chr1D 98.000 200 4 0 4021 4220 439166066 439166265 8.680000e-92 348.0
35 TraesCS2D01G140500 chr1D 86.154 65 5 4 226 289 57504428 57504367 2.720000e-07 67.6
36 TraesCS2D01G140500 chr5D 97.073 205 6 0 4016 4220 451167849 451168053 3.120000e-91 346.0
37 TraesCS2D01G140500 chr5D 96.602 206 7 0 4015 4220 497816995 497816790 4.040000e-90 342.0
38 TraesCS2D01G140500 chr5D 82.564 195 21 9 22 214 537085249 537085066 4.370000e-35 159.0
39 TraesCS2D01G140500 chr6D 96.585 205 7 0 4016 4220 387403263 387403059 1.450000e-89 340.0
40 TraesCS2D01G140500 chr1A 82.486 177 22 5 20 195 474234841 474234673 3.400000e-31 147.0
41 TraesCS2D01G140500 chr3A 77.665 197 33 7 20 214 11589301 11589114 4.460000e-20 110.0
42 TraesCS2D01G140500 chr7B 90.244 41 3 1 826 866 730232743 730232782 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G140500 chr2D 82834064 82838283 4219 True 7793.000 7793 100.00000 1 4220 1 chr2D.!!$R3 4219
1 TraesCS2D01G140500 chr2D 82871870 82875022 3152 True 2225.500 3339 92.94450 905 4007 2 chr2D.!!$R5 3102
2 TraesCS2D01G140500 chr2D 82653458 82656622 3164 True 1961.500 3053 89.19650 871 4015 2 chr2D.!!$R4 3144
3 TraesCS2D01G140500 chr2D 82333918 82336172 2254 True 1205.000 1205 76.75400 961 3190 1 chr2D.!!$R1 2229
4 TraesCS2D01G140500 chr2D 82891286 82894381 3095 True 906.000 1184 80.60650 860 3880 2 chr2D.!!$R6 3020
5 TraesCS2D01G140500 chr2A 83428043 83430389 2346 True 1895.000 1895 81.55800 857 3190 1 chr2A.!!$R2 2333
6 TraesCS2D01G140500 chr2A 83200095 83203118 3023 True 1318.000 2054 84.75400 903 3873 2 chr2A.!!$R4 2970
7 TraesCS2D01G140500 chr2A 83419684 83422782 3098 True 1182.000 1796 83.50200 857 3873 2 chr2A.!!$R5 3016
8 TraesCS2D01G140500 chr2A 83015594 83017847 2253 True 1158.000 1158 76.39300 961 3188 1 chr2A.!!$R1 2227
9 TraesCS2D01G140500 chr2A 83584570 83590324 5754 True 1137.275 3365 89.13775 213 4015 4 chr2A.!!$R6 3802
10 TraesCS2D01G140500 chr2A 83639496 83642431 2935 True 995.000 1448 82.07250 1000 3863 2 chr2A.!!$R7 2863
11 TraesCS2D01G140500 chr2A 83468145 83469596 1451 True 846.000 846 77.56600 1354 2798 1 chr2A.!!$R3 1444
12 TraesCS2D01G140500 chr2B 134548630 134550966 2336 True 2146.000 2146 83.43200 858 3190 1 chr2B.!!$R3 2332
13 TraesCS2D01G140500 chr2B 134511195 134513460 2265 True 2012.000 2012 82.91400 905 3180 1 chr2B.!!$R2 2275
14 TraesCS2D01G140500 chr2B 134477906 134479762 1856 True 1083.000 1083 77.55200 1354 3189 1 chr2B.!!$R1 1835
15 TraesCS2D01G140500 chr2B 134568313 134569487 1174 True 893.000 893 80.60500 1714 2890 1 chr2B.!!$R4 1176


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.106918 TTTTTGTGAGCCGGGTGTCT 60.107 50.0 12.94 0.0 0.00 3.41 F
607 2508 0.178947 AAACCGGGATCCCAAAGCAA 60.179 50.0 30.42 0.0 35.37 3.91 F
1843 3898 0.374758 CATCCGTCGTGCTGGATTTG 59.625 55.0 0.00 0.0 42.31 2.32 F
2319 4378 0.528924 TGATTCAGCATGTTGGCAGC 59.471 50.0 9.87 0.0 37.40 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 4220 0.239347 CGGAGGTTTTCAGCAAGCTG 59.761 55.0 15.67 15.67 44.86 4.24 R
2268 4327 1.267121 TTGTCTCAGGGCTACCAGTC 58.733 55.0 0.00 0.00 40.13 3.51 R
3080 5154 0.381089 CAGCAGGCTTGAAGCTATGC 59.619 55.0 28.11 28.11 46.61 3.14 R
4101 6273 0.039617 TTTTGAAACAGCCGATGCCG 60.040 50.0 0.00 0.00 38.69 5.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.818493 CGAATATTACACATCCATGAGTAGG 57.182 40.000 0.00 0.00 35.75 3.18
25 26 6.813649 CGAATATTACACATCCATGAGTAGGG 59.186 42.308 0.00 0.00 35.75 3.53
26 27 7.309805 CGAATATTACACATCCATGAGTAGGGA 60.310 40.741 0.00 0.00 41.69 4.20
27 28 5.815233 ATTACACATCCATGAGTAGGGAG 57.185 43.478 0.00 0.00 40.62 4.30
28 29 2.402564 ACACATCCATGAGTAGGGAGG 58.597 52.381 0.00 0.00 43.63 4.30
29 30 1.696336 CACATCCATGAGTAGGGAGGG 59.304 57.143 0.00 0.00 42.42 4.30
30 31 1.356124 CATCCATGAGTAGGGAGGGG 58.644 60.000 0.00 0.00 40.62 4.79
31 32 0.194587 ATCCATGAGTAGGGAGGGGG 59.805 60.000 0.00 0.00 40.62 5.40
32 33 2.150051 CCATGAGTAGGGAGGGGGC 61.150 68.421 0.00 0.00 0.00 5.80
33 34 1.074167 CATGAGTAGGGAGGGGGCT 60.074 63.158 0.00 0.00 0.00 5.19
34 35 0.695803 CATGAGTAGGGAGGGGGCTT 60.696 60.000 0.00 0.00 0.00 4.35
35 36 0.695803 ATGAGTAGGGAGGGGGCTTG 60.696 60.000 0.00 0.00 0.00 4.01
36 37 2.692741 AGTAGGGAGGGGGCTTGC 60.693 66.667 0.00 0.00 0.00 4.01
37 38 3.015145 GTAGGGAGGGGGCTTGCA 61.015 66.667 0.00 0.00 0.00 4.08
38 39 3.015145 TAGGGAGGGGGCTTGCAC 61.015 66.667 0.00 0.00 0.00 4.57
39 40 3.881926 TAGGGAGGGGGCTTGCACA 62.882 63.158 0.00 0.00 0.00 4.57
40 41 4.066139 GGGAGGGGGCTTGCACAT 62.066 66.667 0.00 0.00 0.00 3.21
41 42 2.440980 GGAGGGGGCTTGCACATC 60.441 66.667 0.00 0.00 0.00 3.06
42 43 2.825836 GAGGGGGCTTGCACATCG 60.826 66.667 0.00 0.00 0.00 3.84
43 44 3.329542 GAGGGGGCTTGCACATCGA 62.330 63.158 0.00 0.00 0.00 3.59
44 45 3.134127 GGGGGCTTGCACATCGAC 61.134 66.667 0.00 0.00 0.00 4.20
45 46 2.045926 GGGGCTTGCACATCGACT 60.046 61.111 0.00 0.00 0.00 4.18
46 47 1.220749 GGGGCTTGCACATCGACTA 59.779 57.895 0.00 0.00 0.00 2.59
47 48 1.090052 GGGGCTTGCACATCGACTAC 61.090 60.000 0.00 0.00 0.00 2.73
48 49 0.108138 GGGCTTGCACATCGACTACT 60.108 55.000 0.00 0.00 0.00 2.57
49 50 1.136305 GGGCTTGCACATCGACTACTA 59.864 52.381 0.00 0.00 0.00 1.82
50 51 2.464865 GGCTTGCACATCGACTACTAG 58.535 52.381 0.00 0.00 0.00 2.57
51 52 2.464865 GCTTGCACATCGACTACTAGG 58.535 52.381 0.00 0.00 0.00 3.02
52 53 2.159226 GCTTGCACATCGACTACTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
53 54 3.066342 GCTTGCACATCGACTACTAGGTA 59.934 47.826 0.00 0.00 0.00 3.08
54 55 4.790123 GCTTGCACATCGACTACTAGGTAG 60.790 50.000 0.00 3.50 41.43 3.18
55 56 4.146745 TGCACATCGACTACTAGGTAGA 57.853 45.455 11.08 0.00 38.29 2.59
56 57 4.715713 TGCACATCGACTACTAGGTAGAT 58.284 43.478 11.08 0.00 38.29 1.98
57 58 4.515567 TGCACATCGACTACTAGGTAGATG 59.484 45.833 15.63 15.63 46.87 2.90
58 59 4.083217 GCACATCGACTACTAGGTAGATGG 60.083 50.000 19.04 12.46 46.26 3.51
59 60 4.073549 ACATCGACTACTAGGTAGATGGC 58.926 47.826 19.04 0.00 46.26 4.40
60 61 3.137446 TCGACTACTAGGTAGATGGCC 57.863 52.381 11.08 0.00 38.29 5.36
61 62 2.440627 TCGACTACTAGGTAGATGGCCA 59.559 50.000 8.56 8.56 38.29 5.36
62 63 3.117776 TCGACTACTAGGTAGATGGCCAA 60.118 47.826 10.96 0.00 38.29 4.52
63 64 3.253677 CGACTACTAGGTAGATGGCCAAG 59.746 52.174 10.96 2.42 38.29 3.61
64 65 3.574826 GACTACTAGGTAGATGGCCAAGG 59.425 52.174 10.96 0.00 38.29 3.61
65 66 1.132500 ACTAGGTAGATGGCCAAGGC 58.868 55.000 10.96 1.52 41.06 4.35
66 67 1.131638 CTAGGTAGATGGCCAAGGCA 58.868 55.000 10.96 1.49 44.11 4.75
67 68 1.071385 CTAGGTAGATGGCCAAGGCAG 59.929 57.143 10.96 0.00 42.43 4.85
68 69 0.916358 AGGTAGATGGCCAAGGCAGT 60.916 55.000 10.96 0.00 42.43 4.40
69 70 0.837272 GGTAGATGGCCAAGGCAGTA 59.163 55.000 10.96 0.00 42.43 2.74
70 71 1.202698 GGTAGATGGCCAAGGCAGTAG 60.203 57.143 10.96 0.00 42.43 2.57
71 72 1.762957 GTAGATGGCCAAGGCAGTAGA 59.237 52.381 10.96 0.00 42.43 2.59
72 73 0.543749 AGATGGCCAAGGCAGTAGAC 59.456 55.000 10.96 0.00 42.43 2.59
73 74 0.543749 GATGGCCAAGGCAGTAGACT 59.456 55.000 10.96 0.00 42.43 3.24
74 75 1.762957 GATGGCCAAGGCAGTAGACTA 59.237 52.381 10.96 0.00 42.43 2.59
75 76 1.651737 TGGCCAAGGCAGTAGACTAA 58.348 50.000 13.87 0.00 44.11 2.24
76 77 2.196595 TGGCCAAGGCAGTAGACTAAT 58.803 47.619 13.87 0.00 44.11 1.73
77 78 2.576191 TGGCCAAGGCAGTAGACTAATT 59.424 45.455 13.87 0.00 44.11 1.40
78 79 2.945668 GGCCAAGGCAGTAGACTAATTG 59.054 50.000 13.87 0.00 44.11 2.32
79 80 2.356069 GCCAAGGCAGTAGACTAATTGC 59.644 50.000 6.14 10.37 41.49 3.56
80 81 3.609853 CCAAGGCAGTAGACTAATTGCA 58.390 45.455 17.33 0.00 38.27 4.08
81 82 3.375299 CCAAGGCAGTAGACTAATTGCAC 59.625 47.826 17.33 9.81 38.27 4.57
82 83 3.981071 AGGCAGTAGACTAATTGCACA 57.019 42.857 17.33 0.00 38.27 4.57
83 84 4.494091 AGGCAGTAGACTAATTGCACAT 57.506 40.909 17.33 5.03 38.27 3.21
84 85 5.614324 AGGCAGTAGACTAATTGCACATA 57.386 39.130 17.33 0.00 38.27 2.29
85 86 6.179906 AGGCAGTAGACTAATTGCACATAT 57.820 37.500 17.33 1.45 38.27 1.78
86 87 7.303182 AGGCAGTAGACTAATTGCACATATA 57.697 36.000 17.33 0.00 38.27 0.86
87 88 7.735917 AGGCAGTAGACTAATTGCACATATAA 58.264 34.615 17.33 0.00 38.27 0.98
88 89 8.210946 AGGCAGTAGACTAATTGCACATATAAA 58.789 33.333 17.33 0.00 38.27 1.40
89 90 8.836413 GGCAGTAGACTAATTGCACATATAAAA 58.164 33.333 17.33 0.00 38.27 1.52
96 97 9.855021 GACTAATTGCACATATAAAAAGTTGGT 57.145 29.630 0.00 0.00 0.00 3.67
99 100 8.900983 AATTGCACATATAAAAAGTTGGTTGT 57.099 26.923 0.00 0.00 0.00 3.32
100 101 7.938563 TTGCACATATAAAAAGTTGGTTGTC 57.061 32.000 0.00 0.00 0.00 3.18
101 102 7.043961 TGCACATATAAAAAGTTGGTTGTCA 57.956 32.000 0.00 0.00 0.00 3.58
102 103 7.665690 TGCACATATAAAAAGTTGGTTGTCAT 58.334 30.769 0.00 0.00 0.00 3.06
103 104 7.598118 TGCACATATAAAAAGTTGGTTGTCATG 59.402 33.333 0.00 0.00 0.00 3.07
104 105 7.063308 GCACATATAAAAAGTTGGTTGTCATGG 59.937 37.037 0.00 0.00 0.00 3.66
105 106 8.087750 CACATATAAAAAGTTGGTTGTCATGGT 58.912 33.333 0.00 0.00 0.00 3.55
106 107 8.646900 ACATATAAAAAGTTGGTTGTCATGGTT 58.353 29.630 0.00 0.00 0.00 3.67
107 108 8.924691 CATATAAAAAGTTGGTTGTCATGGTTG 58.075 33.333 0.00 0.00 0.00 3.77
108 109 2.888834 AAGTTGGTTGTCATGGTTGC 57.111 45.000 0.00 0.00 0.00 4.17
109 110 2.071778 AGTTGGTTGTCATGGTTGCT 57.928 45.000 0.00 0.00 0.00 3.91
110 111 3.222173 AGTTGGTTGTCATGGTTGCTA 57.778 42.857 0.00 0.00 0.00 3.49
111 112 2.884639 AGTTGGTTGTCATGGTTGCTAC 59.115 45.455 0.00 0.00 0.00 3.58
112 113 1.518325 TGGTTGTCATGGTTGCTACG 58.482 50.000 0.00 0.00 0.00 3.51
113 114 1.202710 TGGTTGTCATGGTTGCTACGT 60.203 47.619 0.00 0.00 0.00 3.57
114 115 1.877443 GGTTGTCATGGTTGCTACGTT 59.123 47.619 0.00 0.00 0.00 3.99
115 116 2.350388 GGTTGTCATGGTTGCTACGTTG 60.350 50.000 0.00 0.00 0.00 4.10
116 117 0.871722 TGTCATGGTTGCTACGTTGC 59.128 50.000 15.28 15.28 0.00 4.17
117 118 0.871722 GTCATGGTTGCTACGTTGCA 59.128 50.000 20.65 20.65 41.65 4.08
123 124 3.388272 TTGCTACGTTGCAACCTCA 57.612 47.368 29.08 10.91 46.43 3.86
124 125 1.890876 TTGCTACGTTGCAACCTCAT 58.109 45.000 29.08 9.44 46.43 2.90
125 126 2.753055 TGCTACGTTGCAACCTCATA 57.247 45.000 22.14 10.05 40.29 2.15
126 127 2.616960 TGCTACGTTGCAACCTCATAG 58.383 47.619 22.14 18.59 40.29 2.23
127 128 1.933853 GCTACGTTGCAACCTCATAGG 59.066 52.381 23.42 10.14 42.49 2.57
128 129 2.418197 GCTACGTTGCAACCTCATAGGA 60.418 50.000 23.42 4.36 37.67 2.94
129 130 2.386661 ACGTTGCAACCTCATAGGAG 57.613 50.000 23.42 8.71 37.67 3.69
141 142 4.970860 CTCATAGGAGGTTGGATCATGT 57.029 45.455 0.00 0.00 37.51 3.21
143 144 6.035368 CTCATAGGAGGTTGGATCATGTAG 57.965 45.833 0.00 0.00 37.51 2.74
144 145 4.284490 TCATAGGAGGTTGGATCATGTAGC 59.716 45.833 0.00 0.00 0.00 3.58
145 146 2.769209 AGGAGGTTGGATCATGTAGCT 58.231 47.619 0.00 0.00 0.00 3.32
146 147 2.703007 AGGAGGTTGGATCATGTAGCTC 59.297 50.000 0.00 1.05 35.10 4.09
147 148 2.224402 GGAGGTTGGATCATGTAGCTCC 60.224 54.545 14.11 14.11 44.92 4.70
148 149 2.435805 GAGGTTGGATCATGTAGCTCCA 59.564 50.000 0.00 0.00 40.65 3.86
154 155 5.840243 TGGATCATGTAGCTCCAAAATTG 57.160 39.130 0.00 0.00 39.49 2.32
155 156 5.127519 TTGGATCATGTAGCTCCAAAATTGG 59.872 40.000 14.83 5.81 46.53 3.16
156 157 7.258447 TTGGATCATGTAGCTCCAAAATTGGT 61.258 38.462 11.74 0.00 46.53 3.67
157 158 8.672736 TTGGATCATGTAGCTCCAAAATTGGTT 61.673 37.037 11.74 2.75 46.53 3.67
192 193 8.465201 AGTTACACTAGGTAGTACTAATGTTGC 58.535 37.037 3.61 0.00 35.34 4.17
193 194 6.845758 ACACTAGGTAGTACTAATGTTGCA 57.154 37.500 3.61 0.00 29.96 4.08
194 195 6.628185 ACACTAGGTAGTACTAATGTTGCAC 58.372 40.000 3.61 0.00 29.96 4.57
195 196 6.040878 CACTAGGTAGTACTAATGTTGCACC 58.959 44.000 3.61 1.40 34.13 5.01
196 197 5.718130 ACTAGGTAGTACTAATGTTGCACCA 59.282 40.000 3.61 0.00 34.13 4.17
197 198 5.693769 AGGTAGTACTAATGTTGCACCAT 57.306 39.130 3.61 0.00 0.00 3.55
198 199 6.801718 AGGTAGTACTAATGTTGCACCATA 57.198 37.500 3.61 0.00 0.00 2.74
199 200 7.374975 AGGTAGTACTAATGTTGCACCATAT 57.625 36.000 3.61 0.00 0.00 1.78
200 201 7.442656 AGGTAGTACTAATGTTGCACCATATC 58.557 38.462 3.61 0.00 0.00 1.63
201 202 7.070696 AGGTAGTACTAATGTTGCACCATATCA 59.929 37.037 3.61 0.00 0.00 2.15
202 203 7.878127 GGTAGTACTAATGTTGCACCATATCAT 59.122 37.037 3.61 0.00 0.00 2.45
203 204 9.923143 GTAGTACTAATGTTGCACCATATCATA 57.077 33.333 3.61 0.00 0.00 2.15
205 206 9.658799 AGTACTAATGTTGCACCATATCATATC 57.341 33.333 0.00 0.00 0.00 1.63
206 207 9.435688 GTACTAATGTTGCACCATATCATATCA 57.564 33.333 0.00 0.00 0.00 2.15
207 208 8.922931 ACTAATGTTGCACCATATCATATCAA 57.077 30.769 0.00 0.00 0.00 2.57
208 209 9.353431 ACTAATGTTGCACCATATCATATCAAA 57.647 29.630 0.00 0.00 0.00 2.69
209 210 9.836076 CTAATGTTGCACCATATCATATCAAAG 57.164 33.333 0.00 0.00 0.00 2.77
210 211 7.828508 ATGTTGCACCATATCATATCAAAGT 57.171 32.000 0.00 0.00 0.00 2.66
211 212 7.643569 TGTTGCACCATATCATATCAAAGTT 57.356 32.000 0.00 0.00 0.00 2.66
219 220 8.721478 ACCATATCATATCAAAGTTGCGAATAC 58.279 33.333 0.00 0.00 0.00 1.89
222 223 9.710900 ATATCATATCAAAGTTGCGAATACAGA 57.289 29.630 0.00 0.00 0.00 3.41
227 228 6.706055 TCAAAGTTGCGAATACAGAGTAAG 57.294 37.500 0.00 0.00 0.00 2.34
267 268 4.640690 AGTGAGGCTCCGGGTGGT 62.641 66.667 12.86 0.00 36.30 4.16
268 269 3.637273 GTGAGGCTCCGGGTGGTT 61.637 66.667 12.86 0.00 36.30 3.67
288 289 2.410466 TTTTTGTGAGCCGGGTGTC 58.590 52.632 12.94 4.03 0.00 3.67
289 290 0.106918 TTTTTGTGAGCCGGGTGTCT 60.107 50.000 12.94 0.00 0.00 3.41
291 292 2.709125 TTTGTGAGCCGGGTGTCTCG 62.709 60.000 12.94 0.00 32.20 4.04
294 295 4.373116 GAGCCGGGTGTCTCGCAA 62.373 66.667 12.94 0.00 0.00 4.85
297 298 2.030562 CCGGGTGTCTCGCAAACT 59.969 61.111 0.00 0.00 0.00 2.66
299 300 1.164041 CCGGGTGTCTCGCAAACTTT 61.164 55.000 0.00 0.00 0.00 2.66
301 302 0.591659 GGGTGTCTCGCAAACTTTCC 59.408 55.000 0.00 0.00 0.00 3.13
302 303 0.591659 GGTGTCTCGCAAACTTTCCC 59.408 55.000 0.00 0.00 0.00 3.97
303 304 0.591659 GTGTCTCGCAAACTTTCCCC 59.408 55.000 0.00 0.00 0.00 4.81
315 347 1.331214 CTTTCCCCAGCTTTGCTTCA 58.669 50.000 0.00 0.00 36.40 3.02
317 349 2.014010 TTCCCCAGCTTTGCTTCAAT 57.986 45.000 0.00 0.00 36.40 2.57
321 353 1.802365 CCCAGCTTTGCTTCAATTTGC 59.198 47.619 0.00 0.00 36.40 3.68
327 359 3.749609 GCTTTGCTTCAATTTGCAGGAAT 59.250 39.130 4.08 0.00 40.46 3.01
334 366 5.775686 CTTCAATTTGCAGGAATTCAGACA 58.224 37.500 7.93 0.00 0.00 3.41
337 369 5.244402 TCAATTTGCAGGAATTCAGACATGT 59.756 36.000 7.93 0.00 0.00 3.21
340 372 1.747355 GCAGGAATTCAGACATGTGGG 59.253 52.381 1.15 0.00 0.00 4.61
341 373 2.881403 GCAGGAATTCAGACATGTGGGT 60.881 50.000 1.15 0.00 0.00 4.51
342 374 3.622206 GCAGGAATTCAGACATGTGGGTA 60.622 47.826 1.15 0.00 0.00 3.69
347 379 5.163258 GGAATTCAGACATGTGGGTAGATCT 60.163 44.000 1.15 0.00 0.00 2.75
350 382 3.448660 TCAGACATGTGGGTAGATCTGTG 59.551 47.826 1.15 0.00 35.98 3.66
362 394 5.220931 GGGTAGATCTGTGAACATTTGATGC 60.221 44.000 5.18 0.00 0.00 3.91
368 400 5.845103 TCTGTGAACATTTGATGCACAATT 58.155 33.333 0.00 0.00 38.79 2.32
371 403 7.924947 TCTGTGAACATTTGATGCACAATTTTA 59.075 29.630 0.00 0.00 38.79 1.52
425 457 4.654015 GAATGTTTAGCGGCGTTTTGATA 58.346 39.130 9.37 0.00 0.00 2.15
428 460 4.856664 TGTTTAGCGGCGTTTTGATAAAA 58.143 34.783 9.37 0.00 0.00 1.52
430 462 5.921408 TGTTTAGCGGCGTTTTGATAAAAAT 59.079 32.000 9.37 0.00 31.13 1.82
431 463 6.088350 TGTTTAGCGGCGTTTTGATAAAAATC 59.912 34.615 9.37 0.00 31.13 2.17
441 2161 7.461416 GCGTTTTGATAAAAATCGTTGGAGATG 60.461 37.037 10.15 0.00 31.13 2.90
444 2164 4.338118 TGATAAAAATCGTTGGAGATGCCC 59.662 41.667 0.00 0.00 34.97 5.36
445 2165 2.514458 AAAATCGTTGGAGATGCCCT 57.486 45.000 0.00 0.00 34.97 5.19
450 2170 1.207089 TCGTTGGAGATGCCCTTAGTG 59.793 52.381 0.00 0.00 34.97 2.74
451 2171 1.066143 CGTTGGAGATGCCCTTAGTGT 60.066 52.381 0.00 0.00 34.97 3.55
453 2173 1.656587 TGGAGATGCCCTTAGTGTGT 58.343 50.000 0.00 0.00 34.97 3.72
455 2175 2.766263 TGGAGATGCCCTTAGTGTGTAG 59.234 50.000 0.00 0.00 34.97 2.74
456 2176 2.766828 GGAGATGCCCTTAGTGTGTAGT 59.233 50.000 0.00 0.00 0.00 2.73
459 2179 2.851263 TGCCCTTAGTGTGTAGTTGG 57.149 50.000 0.00 0.00 0.00 3.77
460 2180 1.271163 TGCCCTTAGTGTGTAGTTGGC 60.271 52.381 0.00 0.00 38.13 4.52
507 2227 0.744414 AGGCCGGACAACATCAATCG 60.744 55.000 11.69 0.00 0.00 3.34
528 2248 0.413037 TGGAGCCCCATTCCATTGTT 59.587 50.000 0.00 0.00 39.74 2.83
585 2486 8.816894 TCAAGTTCTCAAAATATAGAGACCACT 58.183 33.333 0.00 0.00 40.37 4.00
594 2495 5.786264 ATATAGAGACCACTACAAACCGG 57.214 43.478 0.00 0.00 0.00 5.28
605 2506 0.898326 ACAAACCGGGATCCCAAAGC 60.898 55.000 30.42 3.02 35.37 3.51
607 2508 0.178947 AAACCGGGATCCCAAAGCAA 60.179 50.000 30.42 0.00 35.37 3.91
611 2512 1.473258 CGGGATCCCAAAGCAATTGA 58.527 50.000 30.42 0.00 41.85 2.57
612 2513 1.134946 CGGGATCCCAAAGCAATTGAC 59.865 52.381 30.42 0.30 41.85 3.18
613 2514 2.178580 GGGATCCCAAAGCAATTGACA 58.821 47.619 26.95 0.00 41.85 3.58
614 2515 2.767960 GGGATCCCAAAGCAATTGACAT 59.232 45.455 26.95 0.00 41.85 3.06
615 2516 3.181472 GGGATCCCAAAGCAATTGACATC 60.181 47.826 26.95 4.93 41.85 3.06
616 2517 3.703052 GGATCCCAAAGCAATTGACATCT 59.297 43.478 10.34 0.00 41.85 2.90
617 2518 4.441079 GGATCCCAAAGCAATTGACATCTG 60.441 45.833 10.34 0.00 41.85 2.90
618 2519 2.231964 TCCCAAAGCAATTGACATCTGC 59.768 45.455 10.34 1.87 41.85 4.26
619 2520 2.613691 CCAAAGCAATTGACATCTGCC 58.386 47.619 10.34 0.00 41.85 4.85
620 2521 2.028839 CCAAAGCAATTGACATCTGCCA 60.029 45.455 10.34 0.00 41.85 4.92
621 2522 3.250744 CAAAGCAATTGACATCTGCCAG 58.749 45.455 10.34 0.00 41.85 4.85
622 2523 2.502142 AGCAATTGACATCTGCCAGA 57.498 45.000 10.34 0.00 36.73 3.86
624 2525 3.362706 AGCAATTGACATCTGCCAGAAT 58.637 40.909 10.34 0.00 36.73 2.40
626 2527 4.951715 AGCAATTGACATCTGCCAGAATAA 59.048 37.500 10.34 0.00 36.73 1.40
640 2546 5.239306 TGCCAGAATAACTTTCACTGAACTG 59.761 40.000 0.00 0.00 0.00 3.16
644 2550 7.824289 CCAGAATAACTTTCACTGAACTGGATA 59.176 37.037 13.47 0.00 42.22 2.59
665 2571 8.885722 TGGATATTATTGTTTCAAAGTCGGTAC 58.114 33.333 0.00 0.00 0.00 3.34
667 2573 8.795842 ATATTATTGTTTCAAAGTCGGTACCA 57.204 30.769 13.54 0.00 0.00 3.25
670 2576 5.427036 TTGTTTCAAAGTCGGTACCATTC 57.573 39.130 13.54 1.17 0.00 2.67
678 2584 4.138487 AGTCGGTACCATTCCTCATTTC 57.862 45.455 13.54 0.00 0.00 2.17
682 2588 3.013921 GGTACCATTCCTCATTTCGCAA 58.986 45.455 7.15 0.00 0.00 4.85
683 2589 3.442273 GGTACCATTCCTCATTTCGCAAA 59.558 43.478 7.15 0.00 0.00 3.68
684 2590 4.082463 GGTACCATTCCTCATTTCGCAAAA 60.082 41.667 7.15 0.00 0.00 2.44
689 2595 0.890683 CCTCATTTCGCAAAAGGCCT 59.109 50.000 0.00 0.00 40.31 5.19
690 2596 2.091541 CCTCATTTCGCAAAAGGCCTA 58.908 47.619 5.16 0.00 40.31 3.93
691 2597 2.098117 CCTCATTTCGCAAAAGGCCTAG 59.902 50.000 5.16 0.00 40.31 3.02
725 2631 7.078249 TGCAAGCCCTAGAGATTTGAATATA 57.922 36.000 0.00 0.00 0.00 0.86
736 2642 8.716674 AGAGATTTGAATATAACCATTGCCAT 57.283 30.769 0.00 0.00 0.00 4.40
741 2679 8.715191 TTTGAATATAACCATTGCCATGAAAC 57.285 30.769 0.00 0.00 31.07 2.78
783 2721 8.683615 AAATAACTAATTTTGGAACGGAGATCC 58.316 33.333 0.00 0.00 38.96 3.36
838 2776 8.408043 AAAGTATTTCAGATTGGTTCATCACA 57.592 30.769 0.00 0.00 27.08 3.58
839 2777 8.585471 AAGTATTTCAGATTGGTTCATCACAT 57.415 30.769 0.00 0.00 0.00 3.21
848 2786 4.235939 TGGTTCATCACATTTTGGAACG 57.764 40.909 0.00 0.00 38.90 3.95
941 2882 5.048153 TCGTCACTCTGATTTAGACACAG 57.952 43.478 0.00 0.00 0.00 3.66
1016 2972 8.260114 CCATATACATATGTGCTTCAGGATGTA 58.740 37.037 18.81 15.13 40.16 2.29
1220 3185 6.421377 TGTGATTGGTTCAATTCTATGTCG 57.579 37.500 0.00 0.00 35.70 4.35
1246 3238 2.159198 GCTGCAATTCCACCCATGTTAG 60.159 50.000 0.00 0.00 0.00 2.34
1402 3424 4.110482 GGTACTATTTGTGGTAGTGCTCG 58.890 47.826 0.00 0.00 35.79 5.03
1630 3661 1.250154 CCTCCAAATTCCGGCAGCAA 61.250 55.000 0.00 0.00 0.00 3.91
1697 3752 9.010366 GCGAAAAGATTATAATGACCAGAAAAC 57.990 33.333 1.78 0.00 0.00 2.43
1843 3898 0.374758 CATCCGTCGTGCTGGATTTG 59.625 55.000 0.00 0.00 42.31 2.32
2069 4124 4.576463 GGCCATATTAGAACTCACCACTTG 59.424 45.833 0.00 0.00 0.00 3.16
2077 4132 4.451900 AGAACTCACCACTTGTACAAAGG 58.548 43.478 19.87 19.87 0.00 3.11
2192 4251 1.264295 AACCTCCGAGTTGTCCCTAC 58.736 55.000 0.00 0.00 0.00 3.18
2319 4378 0.528924 TGATTCAGCATGTTGGCAGC 59.471 50.000 9.87 0.00 37.40 5.25
2427 4489 6.951198 TGGATGAACAAAATACCCACATACTT 59.049 34.615 0.00 0.00 0.00 2.24
2476 4538 1.272760 GGTCTGTTCCAGAGGAGGAGA 60.273 57.143 0.00 0.00 41.46 3.71
2546 4608 2.426842 AGGCTTGCTACCTTTGATCC 57.573 50.000 0.00 0.00 31.87 3.36
2584 4646 2.222727 AGCAGAGCAACAGGCCTCT 61.223 57.895 0.00 0.00 46.50 3.69
2586 4648 1.584380 GCAGAGCAACAGGCCTCTTG 61.584 60.000 15.87 15.87 46.50 3.02
2618 4680 2.843701 AGAGTTCACAAGCAACAGAGG 58.156 47.619 0.00 0.00 0.00 3.69
2627 4689 3.079578 CAAGCAACAGAGGTGACATGAT 58.920 45.455 0.00 0.00 0.00 2.45
2682 4753 3.672867 CGTTGAAGCTTCTGAGAAGACTC 59.327 47.826 25.34 18.67 42.88 3.36
2723 4794 3.120321 TGGTGTAACTTTGCGTCAGAT 57.880 42.857 0.00 0.00 36.74 2.90
2930 5004 2.037136 GCGCATCCTCAAGTGCAGT 61.037 57.895 0.30 0.00 41.32 4.40
3080 5154 1.134401 CCATAGTGGCAGGTACAGGTG 60.134 57.143 0.00 0.00 0.00 4.00
3097 5171 0.100146 GTGCATAGCTTCAAGCCTGC 59.900 55.000 22.00 22.00 45.28 4.85
3125 5199 4.994907 ATATGTGTGTGCATGCTCAATT 57.005 36.364 22.97 11.03 0.00 2.32
3190 5264 1.136147 GAGGTGAGCGCTGCAAATG 59.864 57.895 18.48 0.00 0.00 2.32
3201 5276 3.044986 CGCTGCAAATGTGGTTATATGC 58.955 45.455 0.00 0.00 0.00 3.14
3349 5509 8.827177 TTCTACTTAACCATGTTACTGAAGTG 57.173 34.615 0.00 0.00 0.00 3.16
3358 5518 7.394016 ACCATGTTACTGAAGTGTAATCATGA 58.606 34.615 19.15 0.00 39.99 3.07
3419 5582 4.356190 AGGAATAATGGATGCAGAAGGGAT 59.644 41.667 0.00 0.00 0.00 3.85
3676 5839 1.632409 ACTGGATGATGGAAGCACTGT 59.368 47.619 0.00 0.00 30.93 3.55
3701 5864 2.038557 AGGTGGAGCGTACAACTTCAAT 59.961 45.455 0.00 0.00 30.07 2.57
3702 5865 2.812011 GGTGGAGCGTACAACTTCAATT 59.188 45.455 0.00 0.00 0.00 2.32
3810 5973 3.462199 GATGGGCCGTGGGTAGCTC 62.462 68.421 1.02 0.00 0.00 4.09
3828 6000 3.244764 CTGAGGCATCAGCAGTGTT 57.755 52.632 16.38 0.00 46.19 3.32
3908 6080 5.163530 ACACACTCAATTTGCTTGTCAATCA 60.164 36.000 0.00 0.00 36.20 2.57
3932 6104 8.633561 TCATCATAGTAGTGAGTTACTCATTGG 58.366 37.037 18.52 4.89 42.73 3.16
4011 6183 5.744171 ACAAGTCAGACATTATGTGCCATA 58.256 37.500 1.24 0.00 0.00 2.74
4015 6187 5.766670 AGTCAGACATTATGTGCCATAATGG 59.233 40.000 30.46 21.25 42.96 3.16
4016 6188 5.764686 GTCAGACATTATGTGCCATAATGGA 59.235 40.000 30.46 22.37 42.96 3.41
4017 6189 5.999600 TCAGACATTATGTGCCATAATGGAG 59.000 40.000 30.46 23.88 42.96 3.86
4018 6190 5.766670 CAGACATTATGTGCCATAATGGAGT 59.233 40.000 30.46 20.09 42.96 3.85
4019 6191 6.936335 CAGACATTATGTGCCATAATGGAGTA 59.064 38.462 30.46 7.46 42.96 2.59
4020 6192 7.445096 CAGACATTATGTGCCATAATGGAGTAA 59.555 37.037 30.46 8.19 42.96 2.24
4021 6193 7.998383 AGACATTATGTGCCATAATGGAGTAAA 59.002 33.333 30.46 7.69 42.96 2.01
4022 6194 8.710749 ACATTATGTGCCATAATGGAGTAAAT 57.289 30.769 30.46 17.29 42.96 1.40
4023 6195 9.806448 ACATTATGTGCCATAATGGAGTAAATA 57.194 29.630 30.46 5.61 42.96 1.40
4025 6197 6.824305 ATGTGCCATAATGGAGTAAATAGC 57.176 37.500 0.00 0.00 40.96 2.97
4026 6198 5.689835 TGTGCCATAATGGAGTAAATAGCA 58.310 37.500 0.00 0.00 40.96 3.49
4027 6199 6.306199 TGTGCCATAATGGAGTAAATAGCAT 58.694 36.000 0.00 0.00 40.96 3.79
4028 6200 7.457561 TGTGCCATAATGGAGTAAATAGCATA 58.542 34.615 0.00 0.00 40.96 3.14
4029 6201 7.941790 TGTGCCATAATGGAGTAAATAGCATAA 59.058 33.333 0.00 0.00 40.96 1.90
4030 6202 8.792633 GTGCCATAATGGAGTAAATAGCATAAA 58.207 33.333 0.00 0.00 40.96 1.40
4031 6203 9.360901 TGCCATAATGGAGTAAATAGCATAAAA 57.639 29.630 0.00 0.00 40.96 1.52
4032 6204 9.626045 GCCATAATGGAGTAAATAGCATAAAAC 57.374 33.333 0.00 0.00 40.96 2.43
4037 6209 9.914834 AATGGAGTAAATAGCATAAAACTACCA 57.085 29.630 0.00 0.00 0.00 3.25
4038 6210 8.726870 TGGAGTAAATAGCATAAAACTACCAC 57.273 34.615 0.00 0.00 0.00 4.16
4039 6211 8.545472 TGGAGTAAATAGCATAAAACTACCACT 58.455 33.333 0.00 0.00 0.00 4.00
4040 6212 9.392259 GGAGTAAATAGCATAAAACTACCACTT 57.608 33.333 0.00 0.00 0.00 3.16
4045 6217 7.916914 ATAGCATAAAACTACCACTTTTCGT 57.083 32.000 0.00 0.00 0.00 3.85
4046 6218 6.237313 AGCATAAAACTACCACTTTTCGTC 57.763 37.500 0.00 0.00 0.00 4.20
4047 6219 5.180680 AGCATAAAACTACCACTTTTCGTCC 59.819 40.000 0.00 0.00 0.00 4.79
4048 6220 5.180680 GCATAAAACTACCACTTTTCGTCCT 59.819 40.000 0.00 0.00 0.00 3.85
4049 6221 6.369615 GCATAAAACTACCACTTTTCGTCCTA 59.630 38.462 0.00 0.00 0.00 2.94
4050 6222 7.065443 GCATAAAACTACCACTTTTCGTCCTAT 59.935 37.037 0.00 0.00 0.00 2.57
4051 6223 6.796705 AAAACTACCACTTTTCGTCCTATG 57.203 37.500 0.00 0.00 0.00 2.23
4052 6224 4.467198 ACTACCACTTTTCGTCCTATGG 57.533 45.455 0.00 0.00 0.00 2.74
4053 6225 3.836562 ACTACCACTTTTCGTCCTATGGT 59.163 43.478 8.15 8.15 42.90 3.55
4054 6226 3.782656 ACCACTTTTCGTCCTATGGTT 57.217 42.857 0.00 0.00 37.12 3.67
4055 6227 3.671716 ACCACTTTTCGTCCTATGGTTC 58.328 45.455 0.00 0.00 37.12 3.62
4056 6228 3.007635 CCACTTTTCGTCCTATGGTTCC 58.992 50.000 0.00 0.00 0.00 3.62
4057 6229 3.558321 CCACTTTTCGTCCTATGGTTCCA 60.558 47.826 0.00 0.00 0.00 3.53
4058 6230 4.069304 CACTTTTCGTCCTATGGTTCCAA 58.931 43.478 0.00 0.00 0.00 3.53
4059 6231 4.517453 CACTTTTCGTCCTATGGTTCCAAA 59.483 41.667 0.00 0.00 0.00 3.28
4060 6232 5.009210 CACTTTTCGTCCTATGGTTCCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
4061 6233 5.595133 ACTTTTCGTCCTATGGTTCCAAAAA 59.405 36.000 0.00 0.00 0.00 1.94
4083 6255 8.608844 AAAAACTACCACATTTTTGTTTGTGA 57.391 26.923 4.70 0.00 44.74 3.58
4084 6256 7.589574 AAACTACCACATTTTTGTTTGTGAC 57.410 32.000 4.70 0.00 44.74 3.67
4085 6257 6.524101 ACTACCACATTTTTGTTTGTGACT 57.476 33.333 4.70 0.00 44.74 3.41
4086 6258 6.329496 ACTACCACATTTTTGTTTGTGACTG 58.671 36.000 4.70 0.00 44.74 3.51
4087 6259 5.398603 ACCACATTTTTGTTTGTGACTGA 57.601 34.783 4.70 0.00 44.74 3.41
4088 6260 5.976458 ACCACATTTTTGTTTGTGACTGAT 58.024 33.333 4.70 0.00 44.74 2.90
4089 6261 7.106439 ACCACATTTTTGTTTGTGACTGATA 57.894 32.000 4.70 0.00 44.74 2.15
4090 6262 7.551585 ACCACATTTTTGTTTGTGACTGATAA 58.448 30.769 4.70 0.00 44.74 1.75
4091 6263 7.491048 ACCACATTTTTGTTTGTGACTGATAAC 59.509 33.333 4.70 0.00 44.74 1.89
4092 6264 7.706179 CCACATTTTTGTTTGTGACTGATAACT 59.294 33.333 4.70 0.00 44.74 2.24
4093 6265 9.729023 CACATTTTTGTTTGTGACTGATAACTA 57.271 29.630 0.00 0.00 44.74 2.24
4094 6266 9.730420 ACATTTTTGTTTGTGACTGATAACTAC 57.270 29.630 0.00 0.00 0.00 2.73
4095 6267 9.180678 CATTTTTGTTTGTGACTGATAACTACC 57.819 33.333 0.00 0.00 0.00 3.18
4096 6268 6.533819 TTTGTTTGTGACTGATAACTACCG 57.466 37.500 0.00 0.00 0.00 4.02
4097 6269 5.456548 TGTTTGTGACTGATAACTACCGA 57.543 39.130 0.00 0.00 0.00 4.69
4098 6270 5.845103 TGTTTGTGACTGATAACTACCGAA 58.155 37.500 0.00 0.00 0.00 4.30
4099 6271 6.282167 TGTTTGTGACTGATAACTACCGAAA 58.718 36.000 0.00 0.00 0.00 3.46
4100 6272 6.201425 TGTTTGTGACTGATAACTACCGAAAC 59.799 38.462 0.00 0.00 0.00 2.78
4101 6273 4.813027 TGTGACTGATAACTACCGAAACC 58.187 43.478 0.00 0.00 0.00 3.27
4102 6274 3.855950 GTGACTGATAACTACCGAAACCG 59.144 47.826 0.00 0.00 0.00 4.44
4118 6290 3.262936 CGGCATCGGCTGTTTCAA 58.737 55.556 0.00 0.00 41.67 2.69
4119 6291 1.578926 CGGCATCGGCTGTTTCAAA 59.421 52.632 0.00 0.00 41.67 2.69
4120 6292 0.039617 CGGCATCGGCTGTTTCAAAA 60.040 50.000 0.00 0.00 41.67 2.44
4121 6293 1.601663 CGGCATCGGCTGTTTCAAAAA 60.602 47.619 0.00 0.00 41.67 1.94
4137 6309 2.388310 AAAAACCCAAAACACCCGTG 57.612 45.000 0.00 0.00 0.00 4.94
4138 6310 0.537653 AAAACCCAAAACACCCGTGG 59.462 50.000 0.00 0.00 34.19 4.94
4139 6311 1.962321 AAACCCAAAACACCCGTGGC 61.962 55.000 0.00 0.00 34.19 5.01
4140 6312 2.520741 CCCAAAACACCCGTGGCT 60.521 61.111 0.00 0.00 34.19 4.75
4141 6313 1.228306 CCCAAAACACCCGTGGCTA 60.228 57.895 0.00 0.00 34.19 3.93
4142 6314 0.824182 CCCAAAACACCCGTGGCTAA 60.824 55.000 0.00 0.00 34.19 3.09
4143 6315 0.596082 CCAAAACACCCGTGGCTAAG 59.404 55.000 0.00 0.00 34.19 2.18
4144 6316 1.600023 CAAAACACCCGTGGCTAAGA 58.400 50.000 0.00 0.00 34.19 2.10
4145 6317 1.950909 CAAAACACCCGTGGCTAAGAA 59.049 47.619 0.00 0.00 34.19 2.52
4146 6318 2.351706 AAACACCCGTGGCTAAGAAA 57.648 45.000 0.00 0.00 34.19 2.52
4147 6319 2.579410 AACACCCGTGGCTAAGAAAT 57.421 45.000 0.00 0.00 34.19 2.17
4148 6320 2.579410 ACACCCGTGGCTAAGAAATT 57.421 45.000 0.00 0.00 34.19 1.82
4149 6321 3.706600 ACACCCGTGGCTAAGAAATTA 57.293 42.857 0.00 0.00 34.19 1.40
4150 6322 4.023726 ACACCCGTGGCTAAGAAATTAA 57.976 40.909 0.00 0.00 34.19 1.40
4151 6323 4.400120 ACACCCGTGGCTAAGAAATTAAA 58.600 39.130 0.00 0.00 34.19 1.52
4152 6324 4.216902 ACACCCGTGGCTAAGAAATTAAAC 59.783 41.667 0.00 0.00 34.19 2.01
4153 6325 3.760151 ACCCGTGGCTAAGAAATTAAACC 59.240 43.478 0.00 0.00 0.00 3.27
4154 6326 3.181504 CCCGTGGCTAAGAAATTAAACCG 60.182 47.826 0.00 0.00 0.00 4.44
4155 6327 3.181504 CCGTGGCTAAGAAATTAAACCGG 60.182 47.826 0.00 0.00 0.00 5.28
4156 6328 3.437741 CGTGGCTAAGAAATTAAACCGGT 59.562 43.478 0.00 0.00 0.00 5.28
4157 6329 4.083164 CGTGGCTAAGAAATTAAACCGGTT 60.083 41.667 15.86 15.86 0.00 4.44
4158 6330 5.563280 CGTGGCTAAGAAATTAAACCGGTTT 60.563 40.000 33.42 33.42 36.63 3.27
4159 6331 6.348376 CGTGGCTAAGAAATTAAACCGGTTTA 60.348 38.462 31.25 31.25 34.23 2.01
4160 6332 7.541162 GTGGCTAAGAAATTAAACCGGTTTAT 58.459 34.615 34.14 22.75 35.27 1.40
4161 6333 7.486870 GTGGCTAAGAAATTAAACCGGTTTATG 59.513 37.037 34.14 18.96 35.27 1.90
4162 6334 7.393796 TGGCTAAGAAATTAAACCGGTTTATGA 59.606 33.333 34.14 23.49 35.27 2.15
4163 6335 7.699391 GGCTAAGAAATTAAACCGGTTTATGAC 59.301 37.037 34.14 24.74 35.27 3.06
4164 6336 8.238631 GCTAAGAAATTAAACCGGTTTATGACA 58.761 33.333 34.14 22.51 35.27 3.58
4167 6339 8.173542 AGAAATTAAACCGGTTTATGACAAGT 57.826 30.769 34.14 20.52 35.27 3.16
4168 6340 8.294577 AGAAATTAAACCGGTTTATGACAAGTC 58.705 33.333 34.14 23.42 35.27 3.01
4169 6341 5.594724 TTAAACCGGTTTATGACAAGTCG 57.405 39.130 34.14 0.00 35.27 4.18
4170 6342 2.088950 ACCGGTTTATGACAAGTCGG 57.911 50.000 0.00 0.00 41.45 4.79
4171 6343 1.338389 ACCGGTTTATGACAAGTCGGG 60.338 52.381 0.00 0.00 40.19 5.14
4172 6344 0.725117 CGGTTTATGACAAGTCGGGC 59.275 55.000 0.00 0.00 0.00 6.13
4173 6345 1.092348 GGTTTATGACAAGTCGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
4174 6346 1.092348 GTTTATGACAAGTCGGGCCC 58.908 55.000 13.57 13.57 0.00 5.80
4175 6347 0.391927 TTTATGACAAGTCGGGCCCG 60.392 55.000 39.13 39.13 41.35 6.13
4176 6348 2.862674 TTATGACAAGTCGGGCCCGC 62.863 60.000 39.89 31.68 39.59 6.13
4183 6355 4.397832 GTCGGGCCCGCACCTAAA 62.398 66.667 39.89 18.28 39.59 1.85
4184 6356 4.397832 TCGGGCCCGCACCTAAAC 62.398 66.667 39.89 0.00 39.59 2.01
4186 6358 4.397832 GGGCCCGCACCTAAACGA 62.398 66.667 5.69 0.00 0.00 3.85
4187 6359 2.358984 GGCCCGCACCTAAACGAA 60.359 61.111 0.00 0.00 0.00 3.85
4188 6360 2.683859 GGCCCGCACCTAAACGAAC 61.684 63.158 0.00 0.00 0.00 3.95
4189 6361 2.683859 GCCCGCACCTAAACGAACC 61.684 63.158 0.00 0.00 0.00 3.62
4190 6362 2.385091 CCCGCACCTAAACGAACCG 61.385 63.158 0.00 0.00 0.00 4.44
4191 6363 1.665599 CCGCACCTAAACGAACCGT 60.666 57.895 0.00 0.00 43.97 4.83
4202 6374 0.374410 ACGAACCGTTTGTTTGACCG 59.626 50.000 0.00 0.00 40.30 4.79
4203 6375 0.374410 CGAACCGTTTGTTTGACCGT 59.626 50.000 0.00 0.00 40.30 4.83
4204 6376 1.202054 CGAACCGTTTGTTTGACCGTT 60.202 47.619 0.00 0.00 40.30 4.44
4205 6377 2.443387 GAACCGTTTGTTTGACCGTTC 58.557 47.619 0.00 0.00 37.29 3.95
4206 6378 0.734309 ACCGTTTGTTTGACCGTTCC 59.266 50.000 0.00 0.00 0.00 3.62
4207 6379 1.018910 CCGTTTGTTTGACCGTTCCT 58.981 50.000 0.00 0.00 0.00 3.36
4208 6380 1.402613 CCGTTTGTTTGACCGTTCCTT 59.597 47.619 0.00 0.00 0.00 3.36
4209 6381 2.159352 CCGTTTGTTTGACCGTTCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
4210 6382 2.849473 CGTTTGTTTGACCGTTCCTTTG 59.151 45.455 0.00 0.00 0.00 2.77
4211 6383 3.426426 CGTTTGTTTGACCGTTCCTTTGA 60.426 43.478 0.00 0.00 0.00 2.69
4212 6384 3.768468 TTGTTTGACCGTTCCTTTGAC 57.232 42.857 0.00 0.00 0.00 3.18
4213 6385 2.018515 TGTTTGACCGTTCCTTTGACC 58.981 47.619 0.00 0.00 0.00 4.02
4214 6386 1.003223 GTTTGACCGTTCCTTTGACCG 60.003 52.381 0.00 0.00 0.00 4.79
4215 6387 0.178533 TTGACCGTTCCTTTGACCGT 59.821 50.000 0.00 0.00 0.00 4.83
4216 6388 0.178533 TGACCGTTCCTTTGACCGTT 59.821 50.000 0.00 0.00 0.00 4.44
4217 6389 1.411977 TGACCGTTCCTTTGACCGTTA 59.588 47.619 0.00 0.00 0.00 3.18
4218 6390 2.158986 TGACCGTTCCTTTGACCGTTAA 60.159 45.455 0.00 0.00 0.00 2.01
4219 6391 2.212652 ACCGTTCCTTTGACCGTTAAC 58.787 47.619 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.813649 CCCTACTCATGGATGTGTAATATTCG 59.186 42.308 0.00 0.00 36.63 3.34
1 2 7.907389 TCCCTACTCATGGATGTGTAATATTC 58.093 38.462 0.00 0.00 36.63 1.75
2 3 7.038017 CCTCCCTACTCATGGATGTGTAATATT 60.038 40.741 0.00 0.00 36.63 1.28
3 4 6.441924 CCTCCCTACTCATGGATGTGTAATAT 59.558 42.308 0.00 0.00 36.63 1.28
4 5 5.780282 CCTCCCTACTCATGGATGTGTAATA 59.220 44.000 0.00 0.00 36.63 0.98
5 6 4.594920 CCTCCCTACTCATGGATGTGTAAT 59.405 45.833 0.00 0.00 36.63 1.89
6 7 3.967326 CCTCCCTACTCATGGATGTGTAA 59.033 47.826 0.00 0.00 36.63 2.41
7 8 3.576861 CCTCCCTACTCATGGATGTGTA 58.423 50.000 0.00 0.00 36.16 2.90
9 10 1.696336 CCCTCCCTACTCATGGATGTG 59.304 57.143 0.00 0.00 0.00 3.21
10 11 1.415126 CCCCTCCCTACTCATGGATGT 60.415 57.143 0.00 0.00 0.00 3.06
11 12 1.356124 CCCCTCCCTACTCATGGATG 58.644 60.000 0.00 0.00 0.00 3.51
12 13 0.194587 CCCCCTCCCTACTCATGGAT 59.805 60.000 0.00 0.00 0.00 3.41
13 14 1.632164 CCCCCTCCCTACTCATGGA 59.368 63.158 0.00 0.00 0.00 3.41
14 15 2.150051 GCCCCCTCCCTACTCATGG 61.150 68.421 0.00 0.00 0.00 3.66
15 16 0.695803 AAGCCCCCTCCCTACTCATG 60.696 60.000 0.00 0.00 0.00 3.07
16 17 0.695803 CAAGCCCCCTCCCTACTCAT 60.696 60.000 0.00 0.00 0.00 2.90
17 18 1.306997 CAAGCCCCCTCCCTACTCA 60.307 63.158 0.00 0.00 0.00 3.41
18 19 2.747443 GCAAGCCCCCTCCCTACTC 61.747 68.421 0.00 0.00 0.00 2.59
19 20 2.692741 GCAAGCCCCCTCCCTACT 60.693 66.667 0.00 0.00 0.00 2.57
20 21 3.015145 TGCAAGCCCCCTCCCTAC 61.015 66.667 0.00 0.00 0.00 3.18
21 22 3.015145 GTGCAAGCCCCCTCCCTA 61.015 66.667 0.00 0.00 0.00 3.53
23 24 4.066139 ATGTGCAAGCCCCCTCCC 62.066 66.667 0.00 0.00 0.00 4.30
24 25 2.440980 GATGTGCAAGCCCCCTCC 60.441 66.667 0.00 0.00 0.00 4.30
25 26 2.825836 CGATGTGCAAGCCCCCTC 60.826 66.667 0.00 0.00 0.00 4.30
26 27 3.329889 TCGATGTGCAAGCCCCCT 61.330 61.111 0.00 0.00 0.00 4.79
27 28 2.252072 TAGTCGATGTGCAAGCCCCC 62.252 60.000 0.00 0.00 0.00 5.40
28 29 1.090052 GTAGTCGATGTGCAAGCCCC 61.090 60.000 0.00 0.00 0.00 5.80
29 30 0.108138 AGTAGTCGATGTGCAAGCCC 60.108 55.000 0.00 0.00 0.00 5.19
30 31 2.464865 CTAGTAGTCGATGTGCAAGCC 58.535 52.381 0.00 0.00 0.00 4.35
31 32 2.159226 ACCTAGTAGTCGATGTGCAAGC 60.159 50.000 0.00 0.00 0.00 4.01
32 33 3.784701 ACCTAGTAGTCGATGTGCAAG 57.215 47.619 0.00 0.00 0.00 4.01
33 34 4.520179 TCTACCTAGTAGTCGATGTGCAA 58.480 43.478 0.00 0.00 37.41 4.08
34 35 4.146745 TCTACCTAGTAGTCGATGTGCA 57.853 45.455 1.94 0.00 37.41 4.57
35 36 4.083217 CCATCTACCTAGTAGTCGATGTGC 60.083 50.000 14.40 0.00 37.93 4.57
36 37 4.083217 GCCATCTACCTAGTAGTCGATGTG 60.083 50.000 14.40 9.77 37.93 3.21
37 38 4.073549 GCCATCTACCTAGTAGTCGATGT 58.926 47.826 14.40 2.16 37.93 3.06
38 39 3.440872 GGCCATCTACCTAGTAGTCGATG 59.559 52.174 0.00 11.02 38.83 3.84
39 40 3.074094 TGGCCATCTACCTAGTAGTCGAT 59.926 47.826 0.00 0.00 37.41 3.59
40 41 2.440627 TGGCCATCTACCTAGTAGTCGA 59.559 50.000 0.00 0.00 37.41 4.20
41 42 2.860009 TGGCCATCTACCTAGTAGTCG 58.140 52.381 0.00 0.00 37.41 4.18
42 43 3.574826 CCTTGGCCATCTACCTAGTAGTC 59.425 52.174 6.09 0.00 37.41 2.59
43 44 3.577919 CCTTGGCCATCTACCTAGTAGT 58.422 50.000 6.09 0.00 37.41 2.73
44 45 2.300437 GCCTTGGCCATCTACCTAGTAG 59.700 54.545 6.09 0.00 37.47 2.57
45 46 2.326428 GCCTTGGCCATCTACCTAGTA 58.674 52.381 6.09 0.00 0.00 1.82
46 47 1.132500 GCCTTGGCCATCTACCTAGT 58.868 55.000 6.09 0.00 0.00 2.57
47 48 1.071385 CTGCCTTGGCCATCTACCTAG 59.929 57.143 6.09 0.00 0.00 3.02
48 49 1.131638 CTGCCTTGGCCATCTACCTA 58.868 55.000 6.09 0.00 0.00 3.08
49 50 0.916358 ACTGCCTTGGCCATCTACCT 60.916 55.000 6.09 0.00 0.00 3.08
50 51 0.837272 TACTGCCTTGGCCATCTACC 59.163 55.000 6.09 0.00 0.00 3.18
51 52 1.762957 TCTACTGCCTTGGCCATCTAC 59.237 52.381 6.09 0.00 0.00 2.59
52 53 1.762957 GTCTACTGCCTTGGCCATCTA 59.237 52.381 6.09 0.00 0.00 1.98
53 54 0.543749 GTCTACTGCCTTGGCCATCT 59.456 55.000 6.09 0.00 0.00 2.90
54 55 0.543749 AGTCTACTGCCTTGGCCATC 59.456 55.000 6.09 0.00 0.00 3.51
55 56 1.879575 TAGTCTACTGCCTTGGCCAT 58.120 50.000 6.09 0.00 0.00 4.40
56 57 1.651737 TTAGTCTACTGCCTTGGCCA 58.348 50.000 0.00 0.00 0.00 5.36
57 58 2.945668 CAATTAGTCTACTGCCTTGGCC 59.054 50.000 9.35 0.00 0.00 5.36
58 59 2.356069 GCAATTAGTCTACTGCCTTGGC 59.644 50.000 4.43 4.43 0.00 4.52
59 60 3.375299 GTGCAATTAGTCTACTGCCTTGG 59.625 47.826 9.59 0.00 33.78 3.61
60 61 4.002982 TGTGCAATTAGTCTACTGCCTTG 58.997 43.478 9.59 0.00 33.78 3.61
61 62 4.286297 TGTGCAATTAGTCTACTGCCTT 57.714 40.909 9.59 0.00 33.78 4.35
62 63 3.981071 TGTGCAATTAGTCTACTGCCT 57.019 42.857 9.59 0.00 33.78 4.75
63 64 7.962964 TTATATGTGCAATTAGTCTACTGCC 57.037 36.000 9.59 3.93 33.78 4.85
70 71 9.855021 ACCAACTTTTTATATGTGCAATTAGTC 57.145 29.630 0.00 0.00 0.00 2.59
73 74 9.988815 ACAACCAACTTTTTATATGTGCAATTA 57.011 25.926 0.00 0.00 0.00 1.40
74 75 8.900983 ACAACCAACTTTTTATATGTGCAATT 57.099 26.923 0.00 0.00 0.00 2.32
75 76 8.147058 TGACAACCAACTTTTTATATGTGCAAT 58.853 29.630 0.00 0.00 0.00 3.56
76 77 7.492524 TGACAACCAACTTTTTATATGTGCAA 58.507 30.769 0.00 0.00 0.00 4.08
77 78 7.043961 TGACAACCAACTTTTTATATGTGCA 57.956 32.000 0.00 0.00 0.00 4.57
78 79 7.063308 CCATGACAACCAACTTTTTATATGTGC 59.937 37.037 0.00 0.00 0.00 4.57
79 80 8.087750 ACCATGACAACCAACTTTTTATATGTG 58.912 33.333 0.00 0.00 0.00 3.21
80 81 8.189119 ACCATGACAACCAACTTTTTATATGT 57.811 30.769 0.00 0.00 0.00 2.29
81 82 8.924691 CAACCATGACAACCAACTTTTTATATG 58.075 33.333 0.00 0.00 0.00 1.78
82 83 7.602265 GCAACCATGACAACCAACTTTTTATAT 59.398 33.333 0.00 0.00 0.00 0.86
83 84 6.926272 GCAACCATGACAACCAACTTTTTATA 59.074 34.615 0.00 0.00 0.00 0.98
84 85 5.757808 GCAACCATGACAACCAACTTTTTAT 59.242 36.000 0.00 0.00 0.00 1.40
85 86 5.105146 AGCAACCATGACAACCAACTTTTTA 60.105 36.000 0.00 0.00 0.00 1.52
86 87 3.938334 GCAACCATGACAACCAACTTTTT 59.062 39.130 0.00 0.00 0.00 1.94
87 88 3.197549 AGCAACCATGACAACCAACTTTT 59.802 39.130 0.00 0.00 0.00 2.27
88 89 2.765699 AGCAACCATGACAACCAACTTT 59.234 40.909 0.00 0.00 0.00 2.66
89 90 2.387757 AGCAACCATGACAACCAACTT 58.612 42.857 0.00 0.00 0.00 2.66
90 91 2.071778 AGCAACCATGACAACCAACT 57.928 45.000 0.00 0.00 0.00 3.16
91 92 2.350388 CGTAGCAACCATGACAACCAAC 60.350 50.000 0.00 0.00 0.00 3.77
92 93 1.876799 CGTAGCAACCATGACAACCAA 59.123 47.619 0.00 0.00 0.00 3.67
93 94 1.202710 ACGTAGCAACCATGACAACCA 60.203 47.619 0.00 0.00 0.00 3.67
94 95 1.519408 ACGTAGCAACCATGACAACC 58.481 50.000 0.00 0.00 0.00 3.77
95 96 2.916111 CAACGTAGCAACCATGACAAC 58.084 47.619 0.00 0.00 0.00 3.32
96 97 1.265635 GCAACGTAGCAACCATGACAA 59.734 47.619 0.00 0.00 0.00 3.18
97 98 0.871722 GCAACGTAGCAACCATGACA 59.128 50.000 0.00 0.00 0.00 3.58
98 99 0.871722 TGCAACGTAGCAACCATGAC 59.128 50.000 0.00 0.00 42.46 3.06
99 100 3.314083 TGCAACGTAGCAACCATGA 57.686 47.368 0.00 0.00 42.46 3.07
105 106 6.367999 TCCTATGAGGTTGCAACGTAGCAA 62.368 45.833 23.61 10.98 42.32 3.91
106 107 2.616960 CTATGAGGTTGCAACGTAGCA 58.383 47.619 23.61 18.21 43.99 3.49
107 108 1.933853 CCTATGAGGTTGCAACGTAGC 59.066 52.381 23.61 13.39 0.00 3.58
108 109 3.448686 CTCCTATGAGGTTGCAACGTAG 58.551 50.000 23.61 19.32 36.53 3.51
109 110 3.520290 CTCCTATGAGGTTGCAACGTA 57.480 47.619 23.61 12.44 36.53 3.57
110 111 2.386661 CTCCTATGAGGTTGCAACGT 57.613 50.000 23.78 23.78 36.53 3.99
120 121 4.970860 ACATGATCCAACCTCCTATGAG 57.029 45.455 0.00 0.00 38.42 2.90
121 122 4.284490 GCTACATGATCCAACCTCCTATGA 59.716 45.833 0.00 0.00 0.00 2.15
122 123 4.285517 AGCTACATGATCCAACCTCCTATG 59.714 45.833 0.00 0.00 0.00 2.23
123 124 4.497516 AGCTACATGATCCAACCTCCTAT 58.502 43.478 0.00 0.00 0.00 2.57
124 125 3.898123 GAGCTACATGATCCAACCTCCTA 59.102 47.826 0.00 0.00 0.00 2.94
125 126 2.703007 GAGCTACATGATCCAACCTCCT 59.297 50.000 0.00 0.00 0.00 3.69
126 127 3.118905 GAGCTACATGATCCAACCTCC 57.881 52.381 0.00 0.00 0.00 4.30
167 168 8.246180 TGCAACATTAGTACTACCTAGTGTAAC 58.754 37.037 0.91 1.11 37.02 2.50
168 169 8.246180 GTGCAACATTAGTACTACCTAGTGTAA 58.754 37.037 0.91 0.00 37.02 2.41
169 170 7.148018 GGTGCAACATTAGTACTACCTAGTGTA 60.148 40.741 0.91 0.00 37.02 2.90
170 171 6.350780 GGTGCAACATTAGTACTACCTAGTGT 60.351 42.308 0.91 0.79 38.91 3.55
171 172 6.040878 GGTGCAACATTAGTACTACCTAGTG 58.959 44.000 0.91 0.00 39.98 2.74
172 173 5.718130 TGGTGCAACATTAGTACTACCTAGT 59.282 40.000 0.00 0.00 39.98 2.57
173 174 6.216801 TGGTGCAACATTAGTACTACCTAG 57.783 41.667 0.00 0.00 39.98 3.02
174 175 6.801718 ATGGTGCAACATTAGTACTACCTA 57.198 37.500 12.64 0.00 39.98 3.08
175 176 5.693769 ATGGTGCAACATTAGTACTACCT 57.306 39.130 12.64 0.00 39.98 3.08
176 177 7.214381 TGATATGGTGCAACATTAGTACTACC 58.786 38.462 24.75 0.95 39.98 3.18
177 178 8.833231 ATGATATGGTGCAACATTAGTACTAC 57.167 34.615 24.75 6.41 39.98 2.73
179 180 9.658799 GATATGATATGGTGCAACATTAGTACT 57.341 33.333 24.75 4.34 39.98 2.73
180 181 9.435688 TGATATGATATGGTGCAACATTAGTAC 57.564 33.333 24.75 10.43 39.98 2.73
182 183 8.922931 TTGATATGATATGGTGCAACATTAGT 57.077 30.769 24.75 9.67 39.98 2.24
183 184 9.836076 CTTTGATATGATATGGTGCAACATTAG 57.164 33.333 24.75 0.00 39.98 1.73
184 185 9.353431 ACTTTGATATGATATGGTGCAACATTA 57.647 29.630 24.75 9.58 39.98 1.90
185 186 8.241497 ACTTTGATATGATATGGTGCAACATT 57.759 30.769 24.75 10.85 39.98 2.71
186 187 7.828508 ACTTTGATATGATATGGTGCAACAT 57.171 32.000 23.01 23.01 39.98 2.71
187 188 7.482474 CAACTTTGATATGATATGGTGCAACA 58.518 34.615 7.04 7.04 39.98 3.33
188 189 6.418819 GCAACTTTGATATGATATGGTGCAAC 59.581 38.462 0.00 0.00 0.00 4.17
189 190 6.506147 GCAACTTTGATATGATATGGTGCAA 58.494 36.000 5.86 0.00 0.00 4.08
190 191 5.277925 CGCAACTTTGATATGATATGGTGCA 60.278 40.000 10.04 0.00 0.00 4.57
191 192 5.049474 TCGCAACTTTGATATGATATGGTGC 60.049 40.000 1.63 1.63 0.00 5.01
192 193 6.544038 TCGCAACTTTGATATGATATGGTG 57.456 37.500 0.00 0.00 0.00 4.17
193 194 7.750229 ATTCGCAACTTTGATATGATATGGT 57.250 32.000 0.00 0.00 0.00 3.55
194 195 8.720562 TGTATTCGCAACTTTGATATGATATGG 58.279 33.333 0.00 0.00 0.00 2.74
195 196 9.750882 CTGTATTCGCAACTTTGATATGATATG 57.249 33.333 0.00 0.00 0.00 1.78
196 197 9.710900 TCTGTATTCGCAACTTTGATATGATAT 57.289 29.630 0.00 0.00 0.00 1.63
197 198 9.196552 CTCTGTATTCGCAACTTTGATATGATA 57.803 33.333 0.00 0.00 0.00 2.15
198 199 7.712639 ACTCTGTATTCGCAACTTTGATATGAT 59.287 33.333 0.00 0.00 0.00 2.45
199 200 7.041721 ACTCTGTATTCGCAACTTTGATATGA 58.958 34.615 0.00 0.00 0.00 2.15
200 201 7.239166 ACTCTGTATTCGCAACTTTGATATG 57.761 36.000 0.00 0.00 0.00 1.78
201 202 8.942338 TTACTCTGTATTCGCAACTTTGATAT 57.058 30.769 0.00 0.00 0.00 1.63
202 203 7.491372 CCTTACTCTGTATTCGCAACTTTGATA 59.509 37.037 0.00 0.00 0.00 2.15
203 204 6.313905 CCTTACTCTGTATTCGCAACTTTGAT 59.686 38.462 0.00 0.00 0.00 2.57
204 205 5.637810 CCTTACTCTGTATTCGCAACTTTGA 59.362 40.000 0.00 0.00 0.00 2.69
205 206 5.163854 CCCTTACTCTGTATTCGCAACTTTG 60.164 44.000 0.00 0.00 0.00 2.77
206 207 4.935808 CCCTTACTCTGTATTCGCAACTTT 59.064 41.667 0.00 0.00 0.00 2.66
207 208 4.504858 CCCTTACTCTGTATTCGCAACTT 58.495 43.478 0.00 0.00 0.00 2.66
208 209 3.679083 GCCCTTACTCTGTATTCGCAACT 60.679 47.826 0.00 0.00 0.00 3.16
209 210 2.608090 GCCCTTACTCTGTATTCGCAAC 59.392 50.000 0.00 0.00 0.00 4.17
210 211 2.737359 CGCCCTTACTCTGTATTCGCAA 60.737 50.000 0.00 0.00 0.00 4.85
211 212 1.202371 CGCCCTTACTCTGTATTCGCA 60.202 52.381 0.00 0.00 0.00 5.10
219 220 1.381327 TCCCTCCGCCCTTACTCTG 60.381 63.158 0.00 0.00 0.00 3.35
222 223 2.758737 CGTCCCTCCGCCCTTACT 60.759 66.667 0.00 0.00 0.00 2.24
272 273 1.070786 GAGACACCCGGCTCACAAA 59.929 57.895 0.00 0.00 0.00 2.83
273 274 2.741092 GAGACACCCGGCTCACAA 59.259 61.111 0.00 0.00 0.00 3.33
278 279 3.936203 TTTGCGAGACACCCGGCT 61.936 61.111 0.00 0.00 0.00 5.52
281 282 0.234884 GAAAGTTTGCGAGACACCCG 59.765 55.000 0.00 0.00 0.00 5.28
285 286 0.181587 TGGGGAAAGTTTGCGAGACA 59.818 50.000 0.66 0.00 0.00 3.41
286 287 0.875059 CTGGGGAAAGTTTGCGAGAC 59.125 55.000 0.66 0.00 0.00 3.36
288 289 0.890996 AGCTGGGGAAAGTTTGCGAG 60.891 55.000 0.66 1.26 0.00 5.03
289 290 0.467290 AAGCTGGGGAAAGTTTGCGA 60.467 50.000 0.66 0.00 0.00 5.10
291 292 1.869774 CAAAGCTGGGGAAAGTTTGC 58.130 50.000 0.00 0.00 0.00 3.68
292 293 1.413812 AGCAAAGCTGGGGAAAGTTTG 59.586 47.619 0.00 0.00 37.57 2.93
294 295 1.688735 GAAGCAAAGCTGGGGAAAGTT 59.311 47.619 0.00 0.00 39.62 2.66
297 298 1.786937 TTGAAGCAAAGCTGGGGAAA 58.213 45.000 0.00 0.00 39.62 3.13
299 300 2.014010 AATTGAAGCAAAGCTGGGGA 57.986 45.000 0.00 0.00 39.62 4.81
301 302 1.802365 GCAAATTGAAGCAAAGCTGGG 59.198 47.619 0.00 0.00 39.62 4.45
302 303 2.478894 CTGCAAATTGAAGCAAAGCTGG 59.521 45.455 0.00 0.00 39.62 4.85
303 304 2.478894 CCTGCAAATTGAAGCAAAGCTG 59.521 45.455 0.00 0.00 39.62 4.24
315 347 5.475719 CACATGTCTGAATTCCTGCAAATT 58.524 37.500 2.27 0.00 0.00 1.82
317 349 3.256383 CCACATGTCTGAATTCCTGCAAA 59.744 43.478 2.27 0.00 0.00 3.68
321 353 3.077484 ACCCACATGTCTGAATTCCTG 57.923 47.619 2.27 0.00 0.00 3.86
327 359 4.081476 CACAGATCTACCCACATGTCTGAA 60.081 45.833 12.35 0.00 37.21 3.02
334 366 5.441718 AATGTTCACAGATCTACCCACAT 57.558 39.130 0.00 0.00 0.00 3.21
337 369 5.497464 TCAAATGTTCACAGATCTACCCA 57.503 39.130 0.00 0.00 0.00 4.51
340 372 6.128200 TGTGCATCAAATGTTCACAGATCTAC 60.128 38.462 0.00 0.00 33.33 2.59
341 373 5.939296 TGTGCATCAAATGTTCACAGATCTA 59.061 36.000 0.00 0.00 33.33 1.98
342 374 4.763279 TGTGCATCAAATGTTCACAGATCT 59.237 37.500 0.00 0.00 33.33 2.75
347 379 6.922247 AAAATTGTGCATCAAATGTTCACA 57.078 29.167 5.94 0.00 39.62 3.58
350 382 8.385111 CCATCTAAAATTGTGCATCAAATGTTC 58.615 33.333 5.94 0.00 39.62 3.18
362 394 4.090354 CGCTTTGTGCCATCTAAAATTGTG 59.910 41.667 0.00 0.00 38.78 3.33
368 400 2.881513 TGAACGCTTTGTGCCATCTAAA 59.118 40.909 0.00 0.00 38.78 1.85
371 403 1.317613 TTGAACGCTTTGTGCCATCT 58.682 45.000 0.00 0.00 38.78 2.90
384 416 2.126502 GGCCATGCGGTTTGAACG 60.127 61.111 0.00 0.00 33.28 3.95
385 417 2.261361 GGGCCATGCGGTTTGAAC 59.739 61.111 4.39 0.00 33.28 3.18
387 419 3.851897 TTCGGGCCATGCGGTTTGA 62.852 57.895 4.39 0.00 33.28 2.69
388 420 2.709883 ATTCGGGCCATGCGGTTTG 61.710 57.895 4.39 0.00 33.28 2.93
389 421 2.362375 ATTCGGGCCATGCGGTTT 60.362 55.556 4.39 0.00 33.28 3.27
393 425 0.029300 CTAAACATTCGGGCCATGCG 59.971 55.000 4.39 0.00 0.00 4.73
396 428 1.101049 CCGCTAAACATTCGGGCCAT 61.101 55.000 4.39 0.00 39.52 4.40
398 430 3.107447 CCGCTAAACATTCGGGCC 58.893 61.111 0.00 0.00 39.52 5.80
400 432 1.641123 AACGCCGCTAAACATTCGGG 61.641 55.000 2.02 0.00 43.11 5.14
425 457 2.807676 AGGGCATCTCCAACGATTTTT 58.192 42.857 0.00 0.00 36.21 1.94
428 460 2.505819 ACTAAGGGCATCTCCAACGATT 59.494 45.455 0.00 0.00 36.21 3.34
430 462 1.207089 CACTAAGGGCATCTCCAACGA 59.793 52.381 0.00 0.00 36.21 3.85
431 463 1.066143 ACACTAAGGGCATCTCCAACG 60.066 52.381 0.00 0.00 36.21 4.10
441 2161 1.271163 TGCCAACTACACACTAAGGGC 60.271 52.381 0.00 0.00 40.51 5.19
444 2164 4.330074 GCATAGTGCCAACTACACACTAAG 59.670 45.833 6.22 3.70 46.67 2.18
445 2165 4.250464 GCATAGTGCCAACTACACACTAA 58.750 43.478 6.22 0.00 46.67 2.24
450 2170 2.355756 CCATGCATAGTGCCAACTACAC 59.644 50.000 0.00 0.00 44.23 2.90
451 2171 2.642427 CCATGCATAGTGCCAACTACA 58.358 47.619 0.00 0.00 44.23 2.74
453 2173 1.679139 GCCATGCATAGTGCCAACTA 58.321 50.000 0.00 0.00 44.23 2.24
455 2175 1.064621 CGCCATGCATAGTGCCAAC 59.935 57.895 0.00 0.00 44.23 3.77
456 2176 2.773745 GCGCCATGCATAGTGCCAA 61.774 57.895 18.37 0.00 44.23 4.52
481 2201 4.776322 TTGTCCGGCCTGGCATCG 62.776 66.667 22.05 15.42 37.80 3.84
492 2212 0.726827 CCACCGATTGATGTTGTCCG 59.273 55.000 0.00 0.00 0.00 4.79
563 2283 9.871238 TTGTAGTGGTCTCTATATTTTGAGAAC 57.129 33.333 5.87 5.87 44.70 3.01
585 2486 1.614850 GCTTTGGGATCCCGGTTTGTA 60.615 52.381 26.03 3.14 39.42 2.41
586 2487 0.898326 GCTTTGGGATCCCGGTTTGT 60.898 55.000 26.03 0.00 39.42 2.83
587 2488 0.897863 TGCTTTGGGATCCCGGTTTG 60.898 55.000 26.03 14.30 39.42 2.93
594 2495 3.703052 AGATGTCAATTGCTTTGGGATCC 59.297 43.478 1.92 1.92 35.92 3.36
605 2506 6.446781 AGTTATTCTGGCAGATGTCAATTG 57.553 37.500 19.50 0.00 0.00 2.32
607 2508 6.660521 TGAAAGTTATTCTGGCAGATGTCAAT 59.339 34.615 19.50 10.85 0.00 2.57
611 2512 5.413833 CAGTGAAAGTTATTCTGGCAGATGT 59.586 40.000 19.50 12.72 0.00 3.06
612 2513 5.645067 TCAGTGAAAGTTATTCTGGCAGATG 59.355 40.000 19.50 8.92 0.00 2.90
613 2514 5.809001 TCAGTGAAAGTTATTCTGGCAGAT 58.191 37.500 19.50 10.97 0.00 2.90
614 2515 5.227569 TCAGTGAAAGTTATTCTGGCAGA 57.772 39.130 14.43 14.43 0.00 4.26
615 2516 5.471456 AGTTCAGTGAAAGTTATTCTGGCAG 59.529 40.000 8.58 8.58 0.00 4.85
616 2517 5.239306 CAGTTCAGTGAAAGTTATTCTGGCA 59.761 40.000 7.25 0.00 0.00 4.92
617 2518 5.335191 CCAGTTCAGTGAAAGTTATTCTGGC 60.335 44.000 18.25 0.03 33.65 4.85
618 2519 5.997746 TCCAGTTCAGTGAAAGTTATTCTGG 59.002 40.000 21.83 21.83 39.70 3.86
619 2520 7.678947 ATCCAGTTCAGTGAAAGTTATTCTG 57.321 36.000 7.25 8.57 0.00 3.02
620 2521 9.965902 AATATCCAGTTCAGTGAAAGTTATTCT 57.034 29.630 7.25 0.00 0.00 2.40
626 2527 9.520515 AACAATAATATCCAGTTCAGTGAAAGT 57.479 29.630 7.25 0.00 0.00 2.66
640 2546 8.340443 GGTACCGACTTTGAAACAATAATATCC 58.660 37.037 0.00 0.00 0.00 2.59
644 2550 7.696992 ATGGTACCGACTTTGAAACAATAAT 57.303 32.000 7.57 0.00 0.00 1.28
660 2566 1.597663 GCGAAATGAGGAATGGTACCG 59.402 52.381 7.57 0.00 0.00 4.02
665 2571 3.514645 CCTTTTGCGAAATGAGGAATGG 58.485 45.455 0.00 0.00 0.00 3.16
667 2573 2.094026 GGCCTTTTGCGAAATGAGGAAT 60.094 45.455 9.68 0.00 42.61 3.01
670 2576 0.890683 AGGCCTTTTGCGAAATGAGG 59.109 50.000 0.00 2.51 42.61 3.86
678 2584 1.133025 CCACATTCTAGGCCTTTTGCG 59.867 52.381 12.58 0.00 42.61 4.85
725 2631 4.283978 TCAGATTGTTTCATGGCAATGGTT 59.716 37.500 0.00 1.13 35.69 3.67
760 2698 6.713276 TGGATCTCCGTTCCAAAATTAGTTA 58.287 36.000 0.00 0.00 40.29 2.24
771 2709 1.278127 TCCAACTTGGATCTCCGTTCC 59.722 52.381 6.39 0.00 42.67 3.62
772 2710 2.762535 TCCAACTTGGATCTCCGTTC 57.237 50.000 6.39 0.00 42.67 3.95
814 2752 8.585471 ATGTGATGAACCAATCTGAAATACTT 57.415 30.769 0.00 0.00 0.00 2.24
815 2753 8.585471 AATGTGATGAACCAATCTGAAATACT 57.415 30.769 0.00 0.00 0.00 2.12
816 2754 9.643693 AAAATGTGATGAACCAATCTGAAATAC 57.356 29.630 0.00 0.00 0.00 1.89
817 2755 9.642327 CAAAATGTGATGAACCAATCTGAAATA 57.358 29.630 0.00 0.00 0.00 1.40
819 2757 6.930164 CCAAAATGTGATGAACCAATCTGAAA 59.070 34.615 0.00 0.00 0.00 2.69
820 2758 6.267242 TCCAAAATGTGATGAACCAATCTGAA 59.733 34.615 0.00 0.00 0.00 3.02
821 2759 5.774184 TCCAAAATGTGATGAACCAATCTGA 59.226 36.000 0.00 0.00 0.00 3.27
822 2760 6.028146 TCCAAAATGTGATGAACCAATCTG 57.972 37.500 0.00 0.00 0.00 2.90
823 2761 6.458210 GTTCCAAAATGTGATGAACCAATCT 58.542 36.000 0.00 0.00 31.41 2.40
824 2762 5.345741 CGTTCCAAAATGTGATGAACCAATC 59.654 40.000 0.00 0.00 33.48 2.67
825 2763 5.229423 CGTTCCAAAATGTGATGAACCAAT 58.771 37.500 0.00 0.00 33.48 3.16
826 2764 4.500545 CCGTTCCAAAATGTGATGAACCAA 60.501 41.667 0.00 0.00 33.48 3.67
827 2765 3.005261 CCGTTCCAAAATGTGATGAACCA 59.995 43.478 0.00 0.00 33.48 3.67
828 2766 3.254657 TCCGTTCCAAAATGTGATGAACC 59.745 43.478 0.00 0.00 33.48 3.62
829 2767 4.475944 CTCCGTTCCAAAATGTGATGAAC 58.524 43.478 0.00 0.00 33.66 3.18
830 2768 3.505680 CCTCCGTTCCAAAATGTGATGAA 59.494 43.478 0.00 0.00 0.00 2.57
831 2769 3.081061 CCTCCGTTCCAAAATGTGATGA 58.919 45.455 0.00 0.00 0.00 2.92
832 2770 2.164219 CCCTCCGTTCCAAAATGTGATG 59.836 50.000 0.00 0.00 0.00 3.07
833 2771 2.041081 TCCCTCCGTTCCAAAATGTGAT 59.959 45.455 0.00 0.00 0.00 3.06
834 2772 1.422024 TCCCTCCGTTCCAAAATGTGA 59.578 47.619 0.00 0.00 0.00 3.58
835 2773 1.812571 CTCCCTCCGTTCCAAAATGTG 59.187 52.381 0.00 0.00 0.00 3.21
836 2774 1.423921 ACTCCCTCCGTTCCAAAATGT 59.576 47.619 0.00 0.00 0.00 2.71
837 2775 2.200373 ACTCCCTCCGTTCCAAAATG 57.800 50.000 0.00 0.00 0.00 2.32
838 2776 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
839 2777 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
848 2786 3.137728 AGCTCTAGACTTCTACTCCCTCC 59.862 52.174 0.00 0.00 0.00 4.30
941 2882 4.525912 ATCAAAAAGGGTGAAGACATGC 57.474 40.909 0.00 0.00 0.00 4.06
1016 2972 3.595758 GCCTGTTGTTGCGGCTGT 61.596 61.111 0.00 0.00 40.62 4.40
1071 3030 1.839994 CCATTCCAGCCAAGAGACCTA 59.160 52.381 0.00 0.00 0.00 3.08
1220 3185 0.813821 GGGTGGAATTGCAGCTTCTC 59.186 55.000 25.25 8.04 0.00 2.87
1246 3238 1.741706 CCATAATGAGATCATGCGGCC 59.258 52.381 0.00 0.00 36.56 6.13
1335 3333 4.699257 ACTGAGCCATGTCTTTGAAAGATC 59.301 41.667 11.20 4.14 40.18 2.75
1402 3424 2.005451 CAGCCTGCTGATTGTGAGTAC 58.995 52.381 13.85 0.00 46.30 2.73
1630 3661 1.133513 TGCCAGCCCAATTCGGAATAT 60.134 47.619 3.22 0.00 36.56 1.28
1697 3752 7.023575 CAGAAGGTTTTTCGTATTCTCATTGG 58.976 38.462 0.00 0.00 0.00 3.16
1699 3754 7.444183 TGACAGAAGGTTTTTCGTATTCTCATT 59.556 33.333 0.00 0.00 0.00 2.57
1843 3898 2.760385 CACTCCCGAGGGTCCTCC 60.760 72.222 11.08 0.00 39.77 4.30
2161 4220 0.239347 CGGAGGTTTTCAGCAAGCTG 59.761 55.000 15.67 15.67 44.86 4.24
2204 4263 4.334759 CCAAAAGTGAGGCTATGAGATGTG 59.665 45.833 0.00 0.00 0.00 3.21
2205 4264 4.225942 TCCAAAAGTGAGGCTATGAGATGT 59.774 41.667 0.00 0.00 0.00 3.06
2208 4267 3.582647 TGTCCAAAAGTGAGGCTATGAGA 59.417 43.478 0.00 0.00 0.00 3.27
2268 4327 1.267121 TTGTCTCAGGGCTACCAGTC 58.733 55.000 0.00 0.00 40.13 3.51
2319 4378 2.266055 GGGGAGGTCAGCTCGTTG 59.734 66.667 0.00 0.00 0.00 4.10
2427 4489 7.882791 TGTTTTGTAATCTTTCTCCAGCATCTA 59.117 33.333 0.00 0.00 0.00 1.98
2476 4538 1.482593 GAGATCCTGGTCGGTTGATGT 59.517 52.381 0.00 0.00 0.00 3.06
2546 4608 7.487484 TCTGCTGATTTCTATACAGTTCTCAG 58.513 38.462 0.00 0.00 34.60 3.35
2584 4646 5.924356 TGTGAACTCTATGACCTTTGACAA 58.076 37.500 0.00 0.00 0.00 3.18
2586 4648 5.106908 GCTTGTGAACTCTATGACCTTTGAC 60.107 44.000 0.00 0.00 0.00 3.18
2618 4680 8.269424 GTGTCTCGTCAATATTTATCATGTCAC 58.731 37.037 0.00 0.00 0.00 3.67
2627 4689 5.961272 TCAGCAGTGTCTCGTCAATATTTA 58.039 37.500 0.00 0.00 0.00 1.40
2670 4741 3.413327 AGTACTTGCGAGTCTTCTCAGA 58.587 45.455 10.71 0.00 40.44 3.27
2682 4753 4.621034 CCAAATTTGCCTTTAGTACTTGCG 59.379 41.667 12.92 0.00 0.00 4.85
2723 4794 6.881065 CCAAAGGAAGAGATGTTCTGTAATCA 59.119 38.462 0.00 0.00 35.91 2.57
2930 5004 7.272731 CGTTCATTCGTAGTAACTGATCTGAAA 59.727 37.037 6.60 0.00 0.00 2.69
3080 5154 0.381089 CAGCAGGCTTGAAGCTATGC 59.619 55.000 28.11 28.11 46.61 3.14
3097 5171 3.061563 GCATGCACACACATATTTTGCAG 59.938 43.478 14.21 0.00 45.80 4.41
3125 5199 2.048222 CCGAGTCGCCAAGCTCAA 60.048 61.111 7.12 0.00 0.00 3.02
3168 5242 2.104572 TTGCAGCGCTCACCTCTCTT 62.105 55.000 7.13 0.00 0.00 2.85
3190 5264 3.682858 ACAATATCCGCGCATATAACCAC 59.317 43.478 8.75 0.00 0.00 4.16
3201 5276 9.142515 TGTAAATATTAAGGTACAATATCCGCG 57.857 33.333 0.00 0.00 30.13 6.46
3349 5509 6.758886 AGCTAAGCTGTGTAAGTCATGATTAC 59.241 38.462 15.45 15.45 37.57 1.89
3358 5518 5.875359 GTGGAAATAGCTAAGCTGTGTAAGT 59.125 40.000 0.00 0.00 40.10 2.24
3419 5582 4.079253 GCCAACAAGAACCTCCAATTCTA 58.921 43.478 0.00 0.00 35.31 2.10
3676 5839 3.756933 AGTTGTACGCTCCACCTTTAA 57.243 42.857 0.00 0.00 0.00 1.52
3701 5864 6.293407 CGAGAAGAACCTGTAATTTTCAGCAA 60.293 38.462 0.00 0.00 0.00 3.91
3702 5865 5.179368 CGAGAAGAACCTGTAATTTTCAGCA 59.821 40.000 0.00 0.00 0.00 4.41
3810 5973 5.499315 AGGTAACACTGCTGATGCCTCAG 62.499 52.174 14.08 14.08 45.99 3.35
3828 6000 6.747414 ACCATCTAAATACATGCTCAGGTA 57.253 37.500 0.00 0.00 31.82 3.08
3908 6080 8.768501 TCCAATGAGTAACTCACTACTATGAT 57.231 34.615 0.00 0.00 43.63 2.45
3932 6104 1.846439 TCATGGGATCTCCTTGGGTTC 59.154 52.381 12.91 0.00 40.13 3.62
3972 6144 5.004448 TGACTTGTCAACACAAACCAACTA 58.996 37.500 0.44 0.00 42.13 2.24
4011 6183 9.914834 TGGTAGTTTTATGCTATTTACTCCATT 57.085 29.630 0.00 0.00 0.00 3.16
4019 6191 8.789762 ACGAAAAGTGGTAGTTTTATGCTATTT 58.210 29.630 0.00 0.00 31.40 1.40
4020 6192 8.331730 ACGAAAAGTGGTAGTTTTATGCTATT 57.668 30.769 0.00 0.00 31.40 1.73
4021 6193 7.065443 GGACGAAAAGTGGTAGTTTTATGCTAT 59.935 37.037 0.00 0.00 31.40 2.97
4022 6194 6.369615 GGACGAAAAGTGGTAGTTTTATGCTA 59.630 38.462 0.00 0.00 31.40 3.49
4023 6195 5.180680 GGACGAAAAGTGGTAGTTTTATGCT 59.819 40.000 0.00 0.00 31.40 3.79
4024 6196 5.180680 AGGACGAAAAGTGGTAGTTTTATGC 59.819 40.000 0.00 0.00 31.40 3.14
4025 6197 6.796705 AGGACGAAAAGTGGTAGTTTTATG 57.203 37.500 0.00 0.00 31.40 1.90
4026 6198 7.551617 CCATAGGACGAAAAGTGGTAGTTTTAT 59.448 37.037 0.00 0.00 31.40 1.40
4027 6199 6.875195 CCATAGGACGAAAAGTGGTAGTTTTA 59.125 38.462 0.00 0.00 31.40 1.52
4028 6200 5.704053 CCATAGGACGAAAAGTGGTAGTTTT 59.296 40.000 0.00 0.00 33.74 2.43
4029 6201 5.221783 ACCATAGGACGAAAAGTGGTAGTTT 60.222 40.000 0.00 0.00 38.13 2.66
4030 6202 4.285260 ACCATAGGACGAAAAGTGGTAGTT 59.715 41.667 0.00 0.00 38.13 2.24
4031 6203 3.836562 ACCATAGGACGAAAAGTGGTAGT 59.163 43.478 0.00 0.00 38.13 2.73
4032 6204 4.467198 ACCATAGGACGAAAAGTGGTAG 57.533 45.455 0.00 0.00 38.13 3.18
4033 6205 4.322953 GGAACCATAGGACGAAAAGTGGTA 60.323 45.833 6.90 0.00 38.91 3.25
4034 6206 3.558533 GGAACCATAGGACGAAAAGTGGT 60.559 47.826 0.00 0.00 41.42 4.16
4035 6207 3.007635 GGAACCATAGGACGAAAAGTGG 58.992 50.000 0.00 0.00 0.00 4.00
4036 6208 3.670625 TGGAACCATAGGACGAAAAGTG 58.329 45.455 0.00 0.00 0.00 3.16
4037 6209 4.360951 TTGGAACCATAGGACGAAAAGT 57.639 40.909 0.00 0.00 0.00 2.66
4038 6210 5.699097 TTTTGGAACCATAGGACGAAAAG 57.301 39.130 0.00 0.00 0.00 2.27
4058 6230 8.499967 GTCACAAACAAAAATGTGGTAGTTTTT 58.500 29.630 6.11 0.00 45.41 1.94
4059 6231 7.875554 AGTCACAAACAAAAATGTGGTAGTTTT 59.124 29.630 6.11 0.00 45.41 2.43
4060 6232 7.330700 CAGTCACAAACAAAAATGTGGTAGTTT 59.669 33.333 6.11 0.00 45.41 2.66
4061 6233 6.811170 CAGTCACAAACAAAAATGTGGTAGTT 59.189 34.615 6.11 0.00 45.41 2.24
4062 6234 6.151985 TCAGTCACAAACAAAAATGTGGTAGT 59.848 34.615 6.11 0.00 45.41 2.73
4063 6235 6.559810 TCAGTCACAAACAAAAATGTGGTAG 58.440 36.000 6.11 0.00 45.41 3.18
4064 6236 6.516739 TCAGTCACAAACAAAAATGTGGTA 57.483 33.333 6.11 0.00 45.41 3.25
4065 6237 5.398603 TCAGTCACAAACAAAAATGTGGT 57.601 34.783 6.11 0.00 45.41 4.16
4066 6238 7.706179 AGTTATCAGTCACAAACAAAAATGTGG 59.294 33.333 6.11 0.00 45.41 4.17
4067 6239 8.633075 AGTTATCAGTCACAAACAAAAATGTG 57.367 30.769 0.00 0.00 46.44 3.21
4068 6240 9.730420 GTAGTTATCAGTCACAAACAAAAATGT 57.270 29.630 0.00 0.00 0.00 2.71
4069 6241 9.180678 GGTAGTTATCAGTCACAAACAAAAATG 57.819 33.333 0.00 0.00 0.00 2.32
4070 6242 8.073768 CGGTAGTTATCAGTCACAAACAAAAAT 58.926 33.333 0.00 0.00 0.00 1.82
4071 6243 7.280428 TCGGTAGTTATCAGTCACAAACAAAAA 59.720 33.333 0.00 0.00 0.00 1.94
4072 6244 6.762187 TCGGTAGTTATCAGTCACAAACAAAA 59.238 34.615 0.00 0.00 0.00 2.44
4073 6245 6.282167 TCGGTAGTTATCAGTCACAAACAAA 58.718 36.000 0.00 0.00 0.00 2.83
4074 6246 5.845103 TCGGTAGTTATCAGTCACAAACAA 58.155 37.500 0.00 0.00 0.00 2.83
4075 6247 5.456548 TCGGTAGTTATCAGTCACAAACA 57.543 39.130 0.00 0.00 0.00 2.83
4076 6248 6.347160 GGTTTCGGTAGTTATCAGTCACAAAC 60.347 42.308 0.00 0.00 0.00 2.93
4077 6249 5.697633 GGTTTCGGTAGTTATCAGTCACAAA 59.302 40.000 0.00 0.00 0.00 2.83
4078 6250 5.232463 GGTTTCGGTAGTTATCAGTCACAA 58.768 41.667 0.00 0.00 0.00 3.33
4079 6251 4.616604 CGGTTTCGGTAGTTATCAGTCACA 60.617 45.833 0.00 0.00 0.00 3.58
4080 6252 3.855950 CGGTTTCGGTAGTTATCAGTCAC 59.144 47.826 0.00 0.00 0.00 3.67
4081 6253 4.100707 CGGTTTCGGTAGTTATCAGTCA 57.899 45.455 0.00 0.00 0.00 3.41
4101 6273 0.039617 TTTTGAAACAGCCGATGCCG 60.040 50.000 0.00 0.00 38.69 5.69
4102 6274 2.147436 TTTTTGAAACAGCCGATGCC 57.853 45.000 0.00 0.00 38.69 4.40
4118 6290 1.066071 CCACGGGTGTTTTGGGTTTTT 60.066 47.619 0.00 0.00 0.00 1.94
4119 6291 0.537653 CCACGGGTGTTTTGGGTTTT 59.462 50.000 0.00 0.00 0.00 2.43
4120 6292 1.962321 GCCACGGGTGTTTTGGGTTT 61.962 55.000 0.00 0.00 0.00 3.27
4121 6293 2.428085 GCCACGGGTGTTTTGGGTT 61.428 57.895 0.00 0.00 0.00 4.11
4122 6294 1.997256 TAGCCACGGGTGTTTTGGGT 61.997 55.000 0.00 0.00 43.50 4.51
4123 6295 0.824182 TTAGCCACGGGTGTTTTGGG 60.824 55.000 0.00 0.00 0.00 4.12
4124 6296 0.596082 CTTAGCCACGGGTGTTTTGG 59.404 55.000 0.00 0.00 0.00 3.28
4125 6297 1.600023 TCTTAGCCACGGGTGTTTTG 58.400 50.000 0.00 0.00 0.00 2.44
4126 6298 2.351706 TTCTTAGCCACGGGTGTTTT 57.648 45.000 0.00 0.00 0.00 2.43
4127 6299 2.351706 TTTCTTAGCCACGGGTGTTT 57.648 45.000 0.00 0.00 0.00 2.83
4128 6300 2.579410 ATTTCTTAGCCACGGGTGTT 57.421 45.000 0.00 0.00 0.00 3.32
4129 6301 2.579410 AATTTCTTAGCCACGGGTGT 57.421 45.000 0.00 0.00 0.00 4.16
4130 6302 4.380128 GGTTTAATTTCTTAGCCACGGGTG 60.380 45.833 0.00 0.00 0.00 4.61
4131 6303 3.760151 GGTTTAATTTCTTAGCCACGGGT 59.240 43.478 0.00 0.00 0.00 5.28
4132 6304 3.181504 CGGTTTAATTTCTTAGCCACGGG 60.182 47.826 0.00 0.00 0.00 5.28
4133 6305 3.181504 CCGGTTTAATTTCTTAGCCACGG 60.182 47.826 0.00 0.00 0.00 4.94
4134 6306 3.437741 ACCGGTTTAATTTCTTAGCCACG 59.562 43.478 0.00 0.00 0.00 4.94
4135 6307 5.381174 AACCGGTTTAATTTCTTAGCCAC 57.619 39.130 15.86 0.00 0.00 5.01
4136 6308 7.393796 TCATAAACCGGTTTAATTTCTTAGCCA 59.606 33.333 36.33 16.70 38.38 4.75
4137 6309 7.699391 GTCATAAACCGGTTTAATTTCTTAGCC 59.301 37.037 36.33 15.45 38.38 3.93
4138 6310 8.238631 TGTCATAAACCGGTTTAATTTCTTAGC 58.761 33.333 36.33 20.56 38.38 3.09
4141 6313 8.635328 ACTTGTCATAAACCGGTTTAATTTCTT 58.365 29.630 36.33 20.44 38.38 2.52
4142 6314 8.173542 ACTTGTCATAAACCGGTTTAATTTCT 57.826 30.769 36.33 21.10 38.38 2.52
4143 6315 7.269724 CGACTTGTCATAAACCGGTTTAATTTC 59.730 37.037 36.33 26.19 38.38 2.17
4144 6316 7.079475 CGACTTGTCATAAACCGGTTTAATTT 58.921 34.615 36.33 21.77 38.38 1.82
4145 6317 6.348704 CCGACTTGTCATAAACCGGTTTAATT 60.349 38.462 36.33 22.44 38.38 1.40
4146 6318 5.122711 CCGACTTGTCATAAACCGGTTTAAT 59.877 40.000 36.33 23.82 38.38 1.40
4147 6319 4.451774 CCGACTTGTCATAAACCGGTTTAA 59.548 41.667 36.33 23.48 38.38 1.52
4148 6320 3.995705 CCGACTTGTCATAAACCGGTTTA 59.004 43.478 35.24 35.24 39.12 2.01
4149 6321 2.809696 CCGACTTGTCATAAACCGGTTT 59.190 45.455 33.42 33.42 36.63 3.27
4150 6322 2.419667 CCGACTTGTCATAAACCGGTT 58.580 47.619 15.86 15.86 0.00 4.44
4151 6323 1.338389 CCCGACTTGTCATAAACCGGT 60.338 52.381 0.00 0.00 34.25 5.28
4152 6324 1.365699 CCCGACTTGTCATAAACCGG 58.634 55.000 0.00 0.00 35.68 5.28
4153 6325 0.725117 GCCCGACTTGTCATAAACCG 59.275 55.000 1.59 0.00 0.00 4.44
4154 6326 1.092348 GGCCCGACTTGTCATAAACC 58.908 55.000 0.00 0.00 0.00 3.27
4155 6327 1.092348 GGGCCCGACTTGTCATAAAC 58.908 55.000 5.69 0.00 0.00 2.01
4156 6328 0.391927 CGGGCCCGACTTGTCATAAA 60.392 55.000 41.82 0.00 42.83 1.40
4157 6329 1.219664 CGGGCCCGACTTGTCATAA 59.780 57.895 41.82 0.00 42.83 1.90
4158 6330 2.897207 CGGGCCCGACTTGTCATA 59.103 61.111 41.82 0.00 42.83 2.15
4169 6341 3.905437 TTCGTTTAGGTGCGGGCCC 62.905 63.158 13.57 13.57 0.00 5.80
4170 6342 2.358984 TTCGTTTAGGTGCGGGCC 60.359 61.111 0.00 0.00 0.00 5.80
4171 6343 2.683859 GGTTCGTTTAGGTGCGGGC 61.684 63.158 0.00 0.00 0.00 6.13
4172 6344 2.385091 CGGTTCGTTTAGGTGCGGG 61.385 63.158 0.00 0.00 0.00 6.13
4173 6345 1.665599 ACGGTTCGTTTAGGTGCGG 60.666 57.895 0.00 0.00 36.35 5.69
4174 6346 3.941035 ACGGTTCGTTTAGGTGCG 58.059 55.556 0.00 0.00 36.35 5.34
4183 6355 0.374410 CGGTCAAACAAACGGTTCGT 59.626 50.000 0.00 0.00 43.97 3.85
4184 6356 0.374410 ACGGTCAAACAAACGGTTCG 59.626 50.000 0.00 0.00 39.29 3.95
4185 6357 2.443387 GAACGGTCAAACAAACGGTTC 58.557 47.619 0.00 9.80 44.33 3.62
4186 6358 1.132834 GGAACGGTCAAACAAACGGTT 59.867 47.619 1.31 0.00 41.21 4.44
4187 6359 0.734309 GGAACGGTCAAACAAACGGT 59.266 50.000 1.31 0.00 0.00 4.83
4188 6360 1.018910 AGGAACGGTCAAACAAACGG 58.981 50.000 1.31 0.00 0.00 4.44
4189 6361 2.836479 AAGGAACGGTCAAACAAACG 57.164 45.000 1.31 0.00 0.00 3.60
4190 6362 3.855379 GTCAAAGGAACGGTCAAACAAAC 59.145 43.478 1.31 0.00 0.00 2.93
4191 6363 3.119424 GGTCAAAGGAACGGTCAAACAAA 60.119 43.478 1.31 0.00 0.00 2.83
4192 6364 2.424246 GGTCAAAGGAACGGTCAAACAA 59.576 45.455 1.31 0.00 0.00 2.83
4193 6365 2.018515 GGTCAAAGGAACGGTCAAACA 58.981 47.619 1.31 0.00 0.00 2.83
4194 6366 2.768833 GGTCAAAGGAACGGTCAAAC 57.231 50.000 1.31 0.00 0.00 2.93



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.