Multiple sequence alignment - TraesCS2D01G139600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G139600 chr2D 100.000 2893 0 0 1 2893 82211187 82208295 0.000000e+00 5343
1 TraesCS2D01G139600 chr2D 96.259 2486 83 7 311 2789 114667926 114665444 0.000000e+00 4067
2 TraesCS2D01G139600 chr2D 97.516 322 3 3 1 318 607305372 607305692 1.960000e-151 545
3 TraesCS2D01G139600 chr5D 96.516 2526 75 9 311 2827 363005886 363008407 0.000000e+00 4165
4 TraesCS2D01G139600 chr5D 95.030 2515 86 21 311 2793 320661006 320663513 0.000000e+00 3916
5 TraesCS2D01G139600 chr5D 93.950 2562 108 25 311 2831 134489352 134486797 0.000000e+00 3829
6 TraesCS2D01G139600 chr2A 95.609 2528 92 10 311 2827 676711464 676713983 0.000000e+00 4036
7 TraesCS2D01G139600 chr5A 95.309 2537 93 13 311 2827 673390537 673388007 0.000000e+00 4002
8 TraesCS2D01G139600 chr5A 94.700 2547 97 16 311 2827 573662162 573659624 0.000000e+00 3921
9 TraesCS2D01G139600 chr5A 95.811 2268 83 7 311 2568 524632600 524630335 0.000000e+00 3651
10 TraesCS2D01G139600 chr1D 96.429 2184 58 9 658 2827 447755640 447753463 0.000000e+00 3583
11 TraesCS2D01G139600 chr3D 95.961 2154 66 10 658 2793 252333286 252331136 0.000000e+00 3476
12 TraesCS2D01G139600 chr3D 99.035 311 2 1 1 310 295072974 295072664 9.060000e-155 556
13 TraesCS2D01G139600 chr3D 99.035 311 2 1 1 310 453780066 453780376 9.060000e-155 556
14 TraesCS2D01G139600 chr3D 98.714 311 4 0 1 311 578230517 578230827 1.170000e-153 553
15 TraesCS2D01G139600 chr1A 95.067 2169 76 11 311 2453 50970843 50968680 0.000000e+00 3384
16 TraesCS2D01G139600 chr1A 96.410 390 13 1 311 700 104232026 104231638 2.430000e-180 641
17 TraesCS2D01G139600 chr7A 93.575 607 28 4 313 918 644765345 644764749 0.000000e+00 894
18 TraesCS2D01G139600 chr7D 98.710 310 4 0 1 310 380523614 380523923 4.210000e-153 551
19 TraesCS2D01G139600 chr7D 97.492 319 8 0 1 319 112772926 112773244 1.960000e-151 545
20 TraesCS2D01G139600 chr6D 98.710 310 4 0 1 310 60400389 60400080 4.210000e-153 551
21 TraesCS2D01G139600 chr6D 98.403 313 5 0 1 313 273689854 273690166 4.210000e-153 551
22 TraesCS2D01G139600 chr4D 98.714 311 3 1 1 310 503776232 503776542 4.210000e-153 551


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G139600 chr2D 82208295 82211187 2892 True 5343 5343 100.000 1 2893 1 chr2D.!!$R1 2892
1 TraesCS2D01G139600 chr2D 114665444 114667926 2482 True 4067 4067 96.259 311 2789 1 chr2D.!!$R2 2478
2 TraesCS2D01G139600 chr5D 363005886 363008407 2521 False 4165 4165 96.516 311 2827 1 chr5D.!!$F2 2516
3 TraesCS2D01G139600 chr5D 320661006 320663513 2507 False 3916 3916 95.030 311 2793 1 chr5D.!!$F1 2482
4 TraesCS2D01G139600 chr5D 134486797 134489352 2555 True 3829 3829 93.950 311 2831 1 chr5D.!!$R1 2520
5 TraesCS2D01G139600 chr2A 676711464 676713983 2519 False 4036 4036 95.609 311 2827 1 chr2A.!!$F1 2516
6 TraesCS2D01G139600 chr5A 673388007 673390537 2530 True 4002 4002 95.309 311 2827 1 chr5A.!!$R3 2516
7 TraesCS2D01G139600 chr5A 573659624 573662162 2538 True 3921 3921 94.700 311 2827 1 chr5A.!!$R2 2516
8 TraesCS2D01G139600 chr5A 524630335 524632600 2265 True 3651 3651 95.811 311 2568 1 chr5A.!!$R1 2257
9 TraesCS2D01G139600 chr1D 447753463 447755640 2177 True 3583 3583 96.429 658 2827 1 chr1D.!!$R1 2169
10 TraesCS2D01G139600 chr3D 252331136 252333286 2150 True 3476 3476 95.961 658 2793 1 chr3D.!!$R1 2135
11 TraesCS2D01G139600 chr1A 50968680 50970843 2163 True 3384 3384 95.067 311 2453 1 chr1A.!!$R1 2142
12 TraesCS2D01G139600 chr7A 644764749 644765345 596 True 894 894 93.575 313 918 1 chr7A.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.032403 TCTTCCCAACCGTACGTGTG 59.968 55.0 15.21 11.18 0.0 3.82 F
181 182 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.0 0.00 0.00 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1558 0.044092 TCCCAGGGAAGTCAGGCATA 59.956 55.000 5.36 0.0 0.0 3.14 R
2077 2157 4.536090 ACCTACCATCACATCCAAAAGAGA 59.464 41.667 0.00 0.0 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.178169 TTCCACCACCACGCCGTT 62.178 61.111 0.00 0.00 0.00 4.44
18 19 4.920112 TCCACCACCACGCCGTTG 62.920 66.667 0.00 0.00 0.00 4.10
20 21 3.947841 CACCACCACGCCGTTGTG 61.948 66.667 13.93 13.93 39.60 3.33
23 24 4.312231 CACCACGCCGTTGTGCTG 62.312 66.667 8.58 0.00 38.55 4.41
26 27 4.671549 CACGCCGTTGTGCTGCTG 62.672 66.667 0.00 0.00 32.31 4.41
29 30 3.058160 GCCGTTGTGCTGCTGGAT 61.058 61.111 0.00 0.00 0.00 3.41
30 31 3.044059 GCCGTTGTGCTGCTGGATC 62.044 63.158 0.00 0.00 0.00 3.36
31 32 1.376424 CCGTTGTGCTGCTGGATCT 60.376 57.895 0.00 0.00 0.00 2.75
32 33 1.364626 CCGTTGTGCTGCTGGATCTC 61.365 60.000 0.00 0.00 0.00 2.75
33 34 1.364626 CGTTGTGCTGCTGGATCTCC 61.365 60.000 0.00 0.00 0.00 3.71
34 35 0.321919 GTTGTGCTGCTGGATCTCCA 60.322 55.000 0.00 0.00 45.30 3.86
35 36 0.622136 TTGTGCTGCTGGATCTCCAT 59.378 50.000 0.00 0.00 46.46 3.41
36 37 0.179702 TGTGCTGCTGGATCTCCATC 59.820 55.000 0.00 0.00 46.46 3.51
37 38 0.179702 GTGCTGCTGGATCTCCATCA 59.820 55.000 0.00 0.85 46.46 3.07
38 39 0.913924 TGCTGCTGGATCTCCATCAA 59.086 50.000 0.00 0.00 46.46 2.57
39 40 1.307097 GCTGCTGGATCTCCATCAAC 58.693 55.000 0.00 0.00 46.46 3.18
40 41 1.964552 CTGCTGGATCTCCATCAACC 58.035 55.000 0.00 0.00 46.46 3.77
41 42 1.489649 CTGCTGGATCTCCATCAACCT 59.510 52.381 0.00 0.00 46.46 3.50
42 43 1.487976 TGCTGGATCTCCATCAACCTC 59.512 52.381 0.00 0.00 46.46 3.85
43 44 1.767681 GCTGGATCTCCATCAACCTCT 59.232 52.381 0.00 0.00 46.46 3.69
44 45 2.224257 GCTGGATCTCCATCAACCTCTC 60.224 54.545 0.00 0.00 46.46 3.20
45 46 2.368221 CTGGATCTCCATCAACCTCTCC 59.632 54.545 0.00 0.00 46.46 3.71
46 47 1.696884 GGATCTCCATCAACCTCTCCC 59.303 57.143 0.00 0.00 35.64 4.30
47 48 2.688477 GATCTCCATCAACCTCTCCCT 58.312 52.381 0.00 0.00 0.00 4.20
48 49 2.166907 TCTCCATCAACCTCTCCCTC 57.833 55.000 0.00 0.00 0.00 4.30
49 50 1.127343 CTCCATCAACCTCTCCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
50 51 0.326618 TCCATCAACCTCTCCCTCCC 60.327 60.000 0.00 0.00 0.00 4.30
51 52 1.348775 CCATCAACCTCTCCCTCCCC 61.349 65.000 0.00 0.00 0.00 4.81
52 53 1.004891 ATCAACCTCTCCCTCCCCC 59.995 63.158 0.00 0.00 0.00 5.40
53 54 1.541168 ATCAACCTCTCCCTCCCCCT 61.541 60.000 0.00 0.00 0.00 4.79
54 55 1.229984 CAACCTCTCCCTCCCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
55 56 1.229984 AACCTCTCCCTCCCCCTTG 60.230 63.158 0.00 0.00 0.00 3.61
56 57 3.093172 CCTCTCCCTCCCCCTTGC 61.093 72.222 0.00 0.00 0.00 4.01
57 58 2.041928 CTCTCCCTCCCCCTTGCT 59.958 66.667 0.00 0.00 0.00 3.91
58 59 2.285668 TCTCCCTCCCCCTTGCTG 60.286 66.667 0.00 0.00 0.00 4.41
59 60 3.415087 CTCCCTCCCCCTTGCTGG 61.415 72.222 0.00 0.00 0.00 4.85
60 61 3.950861 CTCCCTCCCCCTTGCTGGA 62.951 68.421 0.00 0.00 38.35 3.86
61 62 2.697644 CCCTCCCCCTTGCTGGAT 60.698 66.667 0.00 0.00 38.35 3.41
62 63 2.761465 CCCTCCCCCTTGCTGGATC 61.761 68.421 0.00 0.00 38.35 3.36
63 64 2.002977 CCTCCCCCTTGCTGGATCA 61.003 63.158 0.00 0.00 38.35 2.92
64 65 1.574526 CCTCCCCCTTGCTGGATCAA 61.575 60.000 0.00 0.00 38.35 2.57
65 66 0.106819 CTCCCCCTTGCTGGATCAAG 60.107 60.000 0.00 0.00 42.23 3.02
66 67 0.549902 TCCCCCTTGCTGGATCAAGA 60.550 55.000 0.00 0.00 44.61 3.02
67 68 0.332632 CCCCCTTGCTGGATCAAGAA 59.667 55.000 0.00 0.00 44.61 2.52
68 69 1.684248 CCCCCTTGCTGGATCAAGAAG 60.684 57.143 0.00 2.15 44.61 2.85
69 70 1.684248 CCCCTTGCTGGATCAAGAAGG 60.684 57.143 16.02 16.02 44.61 3.46
70 71 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
71 72 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
72 73 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
73 74 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
74 75 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
75 76 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
76 77 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
77 78 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
78 79 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
79 80 2.100087 GGATCAAGAAGGAGGAGACGTC 59.900 54.545 7.70 7.70 0.00 4.34
80 81 2.588464 TCAAGAAGGAGGAGACGTCT 57.412 50.000 20.18 20.18 0.00 4.18
81 82 2.877866 TCAAGAAGGAGGAGACGTCTT 58.122 47.619 21.08 4.10 0.00 3.01
82 83 2.820787 TCAAGAAGGAGGAGACGTCTTC 59.179 50.000 21.08 18.81 41.37 2.87
85 86 4.436368 GGAGGAGACGTCTTCCCA 57.564 61.111 21.08 0.00 42.11 4.37
86 87 2.667348 GGAGGAGACGTCTTCCCAA 58.333 57.895 21.08 0.00 42.11 4.12
87 88 0.246910 GGAGGAGACGTCTTCCCAAC 59.753 60.000 21.08 14.11 42.11 3.77
88 89 0.246910 GAGGAGACGTCTTCCCAACC 59.753 60.000 21.08 14.81 0.00 3.77
89 90 1.080025 GGAGACGTCTTCCCAACCG 60.080 63.158 21.08 0.00 0.00 4.44
90 91 1.664306 GAGACGTCTTCCCAACCGT 59.336 57.895 21.08 0.00 36.04 4.83
91 92 0.883833 GAGACGTCTTCCCAACCGTA 59.116 55.000 21.08 0.00 33.03 4.02
92 93 0.600057 AGACGTCTTCCCAACCGTAC 59.400 55.000 13.58 0.00 33.03 3.67
93 94 0.730494 GACGTCTTCCCAACCGTACG 60.730 60.000 8.69 8.69 33.03 3.67
94 95 1.286880 CGTCTTCCCAACCGTACGT 59.713 57.895 15.21 0.00 0.00 3.57
95 96 1.005294 CGTCTTCCCAACCGTACGTG 61.005 60.000 15.21 6.71 0.00 4.49
96 97 0.032540 GTCTTCCCAACCGTACGTGT 59.967 55.000 15.21 8.99 0.00 4.49
97 98 0.032403 TCTTCCCAACCGTACGTGTG 59.968 55.000 15.21 11.18 0.00 3.82
98 99 0.249573 CTTCCCAACCGTACGTGTGT 60.250 55.000 15.21 1.81 0.00 3.72
99 100 0.177604 TTCCCAACCGTACGTGTGTT 59.822 50.000 15.21 8.50 0.00 3.32
100 101 0.530211 TCCCAACCGTACGTGTGTTG 60.530 55.000 21.61 21.61 39.20 3.33
101 102 0.530211 CCCAACCGTACGTGTGTTGA 60.530 55.000 26.91 0.00 41.38 3.18
102 103 1.288350 CCAACCGTACGTGTGTTGAA 58.712 50.000 26.91 0.00 41.38 2.69
103 104 1.004715 CCAACCGTACGTGTGTTGAAC 60.005 52.381 26.91 1.04 41.38 3.18
104 105 0.922717 AACCGTACGTGTGTTGAACG 59.077 50.000 15.21 0.00 46.32 3.95
105 106 1.199859 CCGTACGTGTGTTGAACGC 59.800 57.895 15.21 1.20 44.80 4.84
110 111 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
111 112 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
112 113 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
113 114 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
114 115 3.723348 GTTGAACGCGGAGGTGCC 61.723 66.667 12.47 0.00 0.00 5.01
136 137 3.255379 GTTCGGCGCTCGGTCATC 61.255 66.667 7.64 0.00 39.77 2.92
137 138 4.847516 TTCGGCGCTCGGTCATCG 62.848 66.667 7.64 0.00 39.77 3.84
141 142 4.492160 GCGCTCGGTCATCGGTGA 62.492 66.667 0.00 0.00 39.77 4.02
142 143 2.413351 CGCTCGGTCATCGGTGAT 59.587 61.111 0.00 0.00 39.77 3.06
143 144 1.226974 CGCTCGGTCATCGGTGATT 60.227 57.895 0.00 0.00 39.77 2.57
144 145 0.806102 CGCTCGGTCATCGGTGATTT 60.806 55.000 0.00 0.00 39.77 2.17
145 146 0.652592 GCTCGGTCATCGGTGATTTG 59.347 55.000 0.00 0.00 39.77 2.32
146 147 1.290203 CTCGGTCATCGGTGATTTGG 58.710 55.000 0.00 0.00 39.77 3.28
147 148 0.899019 TCGGTCATCGGTGATTTGGA 59.101 50.000 0.00 0.00 39.77 3.53
148 149 1.484653 TCGGTCATCGGTGATTTGGAT 59.515 47.619 0.00 0.00 39.77 3.41
149 150 1.867233 CGGTCATCGGTGATTTGGATC 59.133 52.381 0.00 0.00 36.60 3.36
150 151 2.741553 CGGTCATCGGTGATTTGGATCA 60.742 50.000 0.00 0.00 36.60 2.92
160 161 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
161 162 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
162 163 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
163 164 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
164 165 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
165 166 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
166 167 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
167 168 0.319813 TCACGACGAGTACGACTCCA 60.320 55.000 0.00 0.00 42.12 3.86
168 169 0.725686 CACGACGAGTACGACTCCAT 59.274 55.000 0.00 0.00 42.12 3.41
169 170 1.005340 ACGACGAGTACGACTCCATC 58.995 55.000 0.00 6.63 42.12 3.51
170 171 1.004595 CGACGAGTACGACTCCATCA 58.995 55.000 8.73 0.00 42.12 3.07
171 172 1.395954 CGACGAGTACGACTCCATCAA 59.604 52.381 8.73 0.00 42.12 2.57
172 173 2.783333 GACGAGTACGACTCCATCAAC 58.217 52.381 8.73 0.00 42.12 3.18
173 174 1.471684 ACGAGTACGACTCCATCAACC 59.528 52.381 8.73 0.00 42.12 3.77
174 175 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
175 176 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
176 177 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
177 178 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
178 179 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
179 180 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
180 181 0.323629 GACTCCATCAACCCCGTTCA 59.676 55.000 0.00 0.00 0.00 3.18
181 182 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.000 0.00 0.00 0.00 3.18
182 183 0.324943 CTCCATCAACCCCGTTCACT 59.675 55.000 0.00 0.00 0.00 3.41
183 184 0.768622 TCCATCAACCCCGTTCACTT 59.231 50.000 0.00 0.00 0.00 3.16
184 185 0.881118 CCATCAACCCCGTTCACTTG 59.119 55.000 0.00 0.00 0.00 3.16
185 186 1.544537 CCATCAACCCCGTTCACTTGA 60.545 52.381 0.00 0.00 0.00 3.02
186 187 2.226330 CATCAACCCCGTTCACTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
194 195 3.729004 GTTCACTTGAACGCTTCCG 57.271 52.632 6.36 0.00 43.97 4.30
195 196 0.384353 GTTCACTTGAACGCTTCCGC 60.384 55.000 6.36 0.00 43.97 5.54
196 197 0.531974 TTCACTTGAACGCTTCCGCT 60.532 50.000 0.00 0.00 38.22 5.52
197 198 0.944311 TCACTTGAACGCTTCCGCTC 60.944 55.000 0.00 0.00 38.22 5.03
198 199 2.022129 ACTTGAACGCTTCCGCTCG 61.022 57.895 0.00 0.00 38.22 5.03
199 200 3.354499 CTTGAACGCTTCCGCTCGC 62.354 63.158 0.00 0.00 38.22 5.03
205 206 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
206 207 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
207 208 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
208 209 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
209 210 0.248498 TTCCGCTCGCGATCTACAAG 60.248 55.000 10.36 0.00 42.83 3.16
210 211 1.658717 CCGCTCGCGATCTACAAGG 60.659 63.158 10.36 0.00 42.83 3.61
211 212 1.658717 CGCTCGCGATCTACAAGGG 60.659 63.158 10.36 0.00 42.83 3.95
212 213 1.437986 GCTCGCGATCTACAAGGGT 59.562 57.895 10.36 0.00 0.00 4.34
213 214 0.666913 GCTCGCGATCTACAAGGGTA 59.333 55.000 10.36 0.00 0.00 3.69
214 215 1.269998 GCTCGCGATCTACAAGGGTAT 59.730 52.381 10.36 0.00 0.00 2.73
215 216 2.922758 GCTCGCGATCTACAAGGGTATG 60.923 54.545 10.36 0.00 0.00 2.39
216 217 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
217 218 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
226 227 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
227 228 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
228 229 4.471386 ACAAGGGTATGTAGATGCACTCTT 59.529 41.667 0.00 0.00 35.28 2.85
229 230 5.045578 ACAAGGGTATGTAGATGCACTCTTT 60.046 40.000 0.00 0.00 35.28 2.52
230 231 5.700402 AGGGTATGTAGATGCACTCTTTT 57.300 39.130 0.00 0.00 35.28 2.27
231 232 5.675538 AGGGTATGTAGATGCACTCTTTTC 58.324 41.667 0.00 0.00 35.28 2.29
232 233 4.816925 GGGTATGTAGATGCACTCTTTTCC 59.183 45.833 0.00 0.00 35.28 3.13
233 234 4.816925 GGTATGTAGATGCACTCTTTTCCC 59.183 45.833 0.00 0.00 35.28 3.97
234 235 4.851639 ATGTAGATGCACTCTTTTCCCT 57.148 40.909 0.00 0.00 35.28 4.20
235 236 4.207891 TGTAGATGCACTCTTTTCCCTC 57.792 45.455 0.00 0.00 35.28 4.30
236 237 3.840666 TGTAGATGCACTCTTTTCCCTCT 59.159 43.478 0.00 0.00 35.28 3.69
237 238 3.625649 AGATGCACTCTTTTCCCTCTC 57.374 47.619 0.00 0.00 0.00 3.20
238 239 2.909006 AGATGCACTCTTTTCCCTCTCA 59.091 45.455 0.00 0.00 0.00 3.27
239 240 3.522750 AGATGCACTCTTTTCCCTCTCAT 59.477 43.478 0.00 0.00 0.00 2.90
240 241 3.795688 TGCACTCTTTTCCCTCTCATT 57.204 42.857 0.00 0.00 0.00 2.57
241 242 3.415212 TGCACTCTTTTCCCTCTCATTG 58.585 45.455 0.00 0.00 0.00 2.82
242 243 2.163211 GCACTCTTTTCCCTCTCATTGC 59.837 50.000 0.00 0.00 0.00 3.56
243 244 3.683802 CACTCTTTTCCCTCTCATTGCT 58.316 45.455 0.00 0.00 0.00 3.91
244 245 4.836825 CACTCTTTTCCCTCTCATTGCTA 58.163 43.478 0.00 0.00 0.00 3.49
245 246 4.874966 CACTCTTTTCCCTCTCATTGCTAG 59.125 45.833 0.00 0.00 0.00 3.42
246 247 4.780021 ACTCTTTTCCCTCTCATTGCTAGA 59.220 41.667 0.00 0.00 0.00 2.43
247 248 5.249393 ACTCTTTTCCCTCTCATTGCTAGAA 59.751 40.000 0.00 0.00 0.00 2.10
248 249 5.738909 TCTTTTCCCTCTCATTGCTAGAAG 58.261 41.667 0.00 0.00 0.00 2.85
249 250 5.485353 TCTTTTCCCTCTCATTGCTAGAAGA 59.515 40.000 0.00 0.00 0.00 2.87
250 251 4.744795 TTCCCTCTCATTGCTAGAAGAC 57.255 45.455 0.00 0.00 0.00 3.01
251 252 3.987745 TCCCTCTCATTGCTAGAAGACT 58.012 45.455 0.00 0.00 0.00 3.24
252 253 3.957497 TCCCTCTCATTGCTAGAAGACTC 59.043 47.826 0.00 0.00 0.00 3.36
253 254 3.069443 CCCTCTCATTGCTAGAAGACTCC 59.931 52.174 0.00 0.00 0.00 3.85
254 255 3.703556 CCTCTCATTGCTAGAAGACTCCA 59.296 47.826 0.00 0.00 0.00 3.86
255 256 4.344679 CCTCTCATTGCTAGAAGACTCCAT 59.655 45.833 0.00 0.00 0.00 3.41
256 257 5.538053 CCTCTCATTGCTAGAAGACTCCATA 59.462 44.000 0.00 0.00 0.00 2.74
257 258 6.294675 CCTCTCATTGCTAGAAGACTCCATAG 60.295 46.154 0.00 0.00 0.00 2.23
258 259 6.368805 TCTCATTGCTAGAAGACTCCATAGA 58.631 40.000 0.00 0.00 0.00 1.98
259 260 7.009550 TCTCATTGCTAGAAGACTCCATAGAT 58.990 38.462 0.00 0.00 0.00 1.98
260 261 7.508636 TCTCATTGCTAGAAGACTCCATAGATT 59.491 37.037 0.00 0.00 0.00 2.40
261 262 7.440198 TCATTGCTAGAAGACTCCATAGATTG 58.560 38.462 0.00 0.00 0.00 2.67
262 263 6.798427 TTGCTAGAAGACTCCATAGATTGT 57.202 37.500 0.00 0.00 0.00 2.71
263 264 6.798427 TGCTAGAAGACTCCATAGATTGTT 57.202 37.500 0.00 0.00 0.00 2.83
264 265 6.810911 TGCTAGAAGACTCCATAGATTGTTC 58.189 40.000 0.00 0.00 0.00 3.18
265 266 6.609212 TGCTAGAAGACTCCATAGATTGTTCT 59.391 38.462 0.00 0.00 38.39 3.01
266 267 7.124901 TGCTAGAAGACTCCATAGATTGTTCTT 59.875 37.037 0.00 0.00 36.84 2.52
267 268 7.437862 GCTAGAAGACTCCATAGATTGTTCTTG 59.562 40.741 0.00 0.00 36.84 3.02
268 269 6.648192 AGAAGACTCCATAGATTGTTCTTGG 58.352 40.000 0.00 0.00 33.21 3.61
269 270 6.214412 AGAAGACTCCATAGATTGTTCTTGGT 59.786 38.462 0.00 0.00 33.21 3.67
270 271 5.738909 AGACTCCATAGATTGTTCTTGGTG 58.261 41.667 0.00 0.00 34.45 4.17
271 272 5.485353 AGACTCCATAGATTGTTCTTGGTGA 59.515 40.000 0.00 0.00 34.45 4.02
272 273 6.157645 AGACTCCATAGATTGTTCTTGGTGAT 59.842 38.462 0.00 0.00 34.45 3.06
273 274 6.118170 ACTCCATAGATTGTTCTTGGTGATG 58.882 40.000 0.00 0.00 34.45 3.07
274 275 4.883585 TCCATAGATTGTTCTTGGTGATGC 59.116 41.667 0.00 0.00 34.45 3.91
275 276 4.260907 CCATAGATTGTTCTTGGTGATGCG 60.261 45.833 0.00 0.00 33.17 4.73
276 277 2.783135 AGATTGTTCTTGGTGATGCGT 58.217 42.857 0.00 0.00 0.00 5.24
277 278 3.937814 AGATTGTTCTTGGTGATGCGTA 58.062 40.909 0.00 0.00 0.00 4.42
278 279 3.935203 AGATTGTTCTTGGTGATGCGTAG 59.065 43.478 0.00 0.00 0.00 3.51
279 280 3.394674 TTGTTCTTGGTGATGCGTAGA 57.605 42.857 0.00 0.00 0.00 2.59
280 281 3.394674 TGTTCTTGGTGATGCGTAGAA 57.605 42.857 0.00 0.00 0.00 2.10
281 282 3.734463 TGTTCTTGGTGATGCGTAGAAA 58.266 40.909 0.00 0.00 0.00 2.52
282 283 4.130857 TGTTCTTGGTGATGCGTAGAAAA 58.869 39.130 0.00 0.00 0.00 2.29
283 284 4.759693 TGTTCTTGGTGATGCGTAGAAAAT 59.240 37.500 0.00 0.00 0.00 1.82
284 285 5.240623 TGTTCTTGGTGATGCGTAGAAAATT 59.759 36.000 0.00 0.00 0.00 1.82
285 286 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
286 287 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
287 288 7.441890 TCTTGGTGATGCGTAGAAAATTTTA 57.558 32.000 2.75 0.00 0.00 1.52
288 289 7.877003 TCTTGGTGATGCGTAGAAAATTTTAA 58.123 30.769 2.75 0.00 0.00 1.52
289 290 8.519526 TCTTGGTGATGCGTAGAAAATTTTAAT 58.480 29.630 2.75 0.00 0.00 1.40
290 291 9.139174 CTTGGTGATGCGTAGAAAATTTTAATT 57.861 29.630 2.75 0.00 0.00 1.40
291 292 9.482627 TTGGTGATGCGTAGAAAATTTTAATTT 57.517 25.926 2.75 0.00 40.15 1.82
292 293 9.134734 TGGTGATGCGTAGAAAATTTTAATTTC 57.865 29.630 2.75 0.00 37.62 2.17
293 294 9.353999 GGTGATGCGTAGAAAATTTTAATTTCT 57.646 29.630 2.75 7.50 46.11 2.52
295 296 8.859156 TGATGCGTAGAAAATTTTAATTTCTGC 58.141 29.630 2.75 9.37 44.55 4.26
296 297 8.755696 ATGCGTAGAAAATTTTAATTTCTGCA 57.244 26.923 14.47 13.84 44.63 4.41
297 298 8.581057 TGCGTAGAAAATTTTAATTTCTGCAA 57.419 26.923 14.47 4.02 44.63 4.08
298 299 8.484008 TGCGTAGAAAATTTTAATTTCTGCAAC 58.516 29.630 14.47 8.76 44.63 4.17
299 300 7.678428 GCGTAGAAAATTTTAATTTCTGCAACG 59.322 33.333 14.47 14.26 44.63 4.10
300 301 8.897809 CGTAGAAAATTTTAATTTCTGCAACGA 58.102 29.630 13.55 0.00 44.63 3.85
303 304 8.925700 AGAAAATTTTAATTTCTGCAACGATCC 58.074 29.630 2.75 0.00 43.56 3.36
304 305 7.595311 AAATTTTAATTTCTGCAACGATCCC 57.405 32.000 0.00 0.00 33.54 3.85
305 306 4.712122 TTTAATTTCTGCAACGATCCCC 57.288 40.909 0.00 0.00 0.00 4.81
306 307 2.214376 AATTTCTGCAACGATCCCCA 57.786 45.000 0.00 0.00 0.00 4.96
307 308 2.214376 ATTTCTGCAACGATCCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
308 309 1.243902 TTTCTGCAACGATCCCCAAC 58.756 50.000 0.00 0.00 0.00 3.77
309 310 0.109532 TTCTGCAACGATCCCCAACA 59.890 50.000 0.00 0.00 0.00 3.33
352 353 2.957402 TGGCCTCTGTGAGTTCAATT 57.043 45.000 3.32 0.00 0.00 2.32
357 358 2.350522 CTCTGTGAGTTCAATTCCCCG 58.649 52.381 0.00 0.00 0.00 5.73
408 409 2.943199 GCTGCAGCTAGGGTTTGATCTT 60.943 50.000 31.33 0.00 38.21 2.40
435 436 4.641989 GCATGGTTGATTAGTGGTCTGATT 59.358 41.667 0.00 0.00 0.00 2.57
484 485 3.669557 GCTGCGGTTACAATTTGTGGTAG 60.670 47.826 12.30 8.36 0.00 3.18
544 545 7.210873 AGTAGTAGAGTTTGAAGTTGAACCTG 58.789 38.462 0.00 0.00 0.00 4.00
711 731 5.039920 ACATGTATGCTCCTGCTTTCATA 57.960 39.130 0.00 0.00 40.48 2.15
941 962 1.873903 CGTTGAGCCAACTACTGCTGT 60.874 52.381 13.76 0.66 41.62 4.40
1303 1352 0.530650 CCATGTCGCGGTTAGCTCAT 60.531 55.000 6.13 0.00 45.59 2.90
1453 1503 2.328819 ATGCAGCACATCTTCTCCTC 57.671 50.000 0.00 0.00 31.52 3.71
1508 1558 0.912006 GGGAGCCTCTTGGTTCTCCT 60.912 60.000 7.03 0.00 42.35 3.69
1632 1684 0.106521 GAAGAGAGGAGGCCTGATGC 59.893 60.000 12.00 0.00 31.76 3.91
2077 2157 2.633509 GCGGTGGTAGGACGACACT 61.634 63.158 0.00 0.00 35.53 3.55
2233 2321 3.678072 CCATTGATTTGCTGCTTCAACTG 59.322 43.478 12.86 11.91 32.61 3.16
2290 2378 2.955660 GTGTTCATTGGTGAGGTTCCAA 59.044 45.455 0.00 0.00 46.82 3.53
2479 2567 0.905357 AGCTGCTAAGGTGGATCGTT 59.095 50.000 0.00 0.00 31.35 3.85
2541 2629 3.064820 AGTTCGTCACCATTGTTGTGTTC 59.935 43.478 0.00 0.00 35.25 3.18
2583 2671 4.202441 GTGATCATTGTGGGTAAGCTCAT 58.798 43.478 0.00 0.00 0.00 2.90
2636 2724 0.885150 TCGTATGCAACCAAACGCCA 60.885 50.000 0.00 0.00 35.40 5.69
2644 2732 2.352225 GCAACCAAACGCCATGTTCATA 60.352 45.455 0.00 0.00 40.84 2.15
2665 2753 2.190313 CGCTAGGGCCAATGCAGA 59.810 61.111 6.18 0.00 40.13 4.26
2670 2758 0.403655 TAGGGCCAATGCAGACAACA 59.596 50.000 6.18 0.00 40.13 3.33
2683 2776 1.191096 GACAACAAAGTGCACTTGCG 58.809 50.000 31.73 25.99 45.83 4.85
2684 2777 0.525761 ACAACAAAGTGCACTTGCGT 59.474 45.000 31.73 26.61 45.83 5.24
2793 2886 2.744202 GGTTGAGAAGTTCATGCGATGT 59.256 45.455 5.50 0.00 35.27 3.06
2801 2894 5.127194 AGAAGTTCATGCGATGTAGGAACTA 59.873 40.000 13.64 0.00 45.15 2.24
2827 2920 2.473760 CGACAACCAAACACGCCCA 61.474 57.895 0.00 0.00 0.00 5.36
2831 2924 1.142965 AACCAAACACGCCCAAAGC 59.857 52.632 0.00 0.00 38.52 3.51
2832 2925 1.608717 AACCAAACACGCCCAAAGCA 61.609 50.000 0.00 0.00 44.04 3.91
2833 2926 1.142748 CCAAACACGCCCAAAGCAA 59.857 52.632 0.00 0.00 44.04 3.91
2834 2927 0.249826 CCAAACACGCCCAAAGCAAT 60.250 50.000 0.00 0.00 44.04 3.56
2835 2928 1.139163 CAAACACGCCCAAAGCAATC 58.861 50.000 0.00 0.00 44.04 2.67
2836 2929 0.318614 AAACACGCCCAAAGCAATCG 60.319 50.000 0.00 0.00 44.04 3.34
2837 2930 1.169661 AACACGCCCAAAGCAATCGA 61.170 50.000 0.00 0.00 44.04 3.59
2838 2931 0.960364 ACACGCCCAAAGCAATCGAT 60.960 50.000 0.00 0.00 44.04 3.59
2839 2932 0.523968 CACGCCCAAAGCAATCGATG 60.524 55.000 0.00 0.00 44.04 3.84
2840 2933 1.064621 CGCCCAAAGCAATCGATGG 59.935 57.895 0.00 0.00 44.04 3.51
2841 2934 1.227060 GCCCAAAGCAATCGATGGC 60.227 57.895 17.46 17.46 42.97 4.40
2842 2935 1.438814 CCCAAAGCAATCGATGGCC 59.561 57.895 21.30 0.00 0.00 5.36
2843 2936 1.064621 CCAAAGCAATCGATGGCCG 59.935 57.895 21.30 10.04 40.25 6.13
2866 2959 4.537433 GGCGGCGAAGGAGAGCAT 62.537 66.667 12.98 0.00 34.54 3.79
2867 2960 3.267860 GCGGCGAAGGAGAGCATG 61.268 66.667 12.98 0.00 34.54 4.06
2868 2961 2.185350 CGGCGAAGGAGAGCATGT 59.815 61.111 0.00 0.00 34.54 3.21
2869 2962 1.880340 CGGCGAAGGAGAGCATGTC 60.880 63.158 0.00 0.00 34.54 3.06
2870 2963 1.880340 GGCGAAGGAGAGCATGTCG 60.880 63.158 0.00 0.00 34.54 4.35
2871 2964 1.153745 GCGAAGGAGAGCATGTCGT 60.154 57.895 0.00 0.00 34.29 4.34
2872 2965 0.737715 GCGAAGGAGAGCATGTCGTT 60.738 55.000 0.00 0.00 39.28 3.85
2873 2966 1.272781 CGAAGGAGAGCATGTCGTTC 58.727 55.000 7.01 7.01 46.01 3.95
2875 2968 2.376808 AAGGAGAGCATGTCGTTCAG 57.623 50.000 0.00 0.00 30.12 3.02
2876 2969 1.550327 AGGAGAGCATGTCGTTCAGA 58.450 50.000 0.00 0.00 0.00 3.27
2877 2970 2.106566 AGGAGAGCATGTCGTTCAGAT 58.893 47.619 0.00 0.00 0.00 2.90
2878 2971 2.159128 AGGAGAGCATGTCGTTCAGATG 60.159 50.000 0.00 0.00 0.00 2.90
2879 2972 2.159184 GGAGAGCATGTCGTTCAGATGA 60.159 50.000 0.00 0.00 0.00 2.92
2880 2973 3.492309 GGAGAGCATGTCGTTCAGATGAT 60.492 47.826 0.00 0.00 0.00 2.45
2881 2974 3.455327 AGAGCATGTCGTTCAGATGATG 58.545 45.455 0.00 0.00 0.00 3.07
2882 2975 2.543012 GAGCATGTCGTTCAGATGATGG 59.457 50.000 0.00 0.00 0.00 3.51
2883 2976 1.003116 GCATGTCGTTCAGATGATGGC 60.003 52.381 0.00 0.00 0.00 4.40
2884 2977 2.558378 CATGTCGTTCAGATGATGGCT 58.442 47.619 0.00 0.00 0.00 4.75
2885 2978 2.014335 TGTCGTTCAGATGATGGCTG 57.986 50.000 0.00 0.00 34.71 4.85
2886 2979 1.293924 GTCGTTCAGATGATGGCTGG 58.706 55.000 0.00 0.00 34.20 4.85
2887 2980 0.462581 TCGTTCAGATGATGGCTGGC 60.463 55.000 0.00 0.00 34.20 4.85
2888 2981 1.769098 CGTTCAGATGATGGCTGGCG 61.769 60.000 0.00 0.00 34.20 5.69
2889 2982 1.153107 TTCAGATGATGGCTGGCGG 60.153 57.895 0.00 0.00 34.20 6.13
2890 2983 3.285215 CAGATGATGGCTGGCGGC 61.285 66.667 10.59 10.59 40.90 6.53
2891 2984 3.486685 AGATGATGGCTGGCGGCT 61.487 61.111 19.30 0.00 41.46 5.52
2892 2985 2.976903 GATGATGGCTGGCGGCTC 60.977 66.667 19.30 9.50 41.46 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.178169 AACGGCGTGGTGGTGGAA 62.178 61.111 15.70 0.00 0.00 3.53
1 2 4.920112 CAACGGCGTGGTGGTGGA 62.920 66.667 15.70 0.00 0.00 4.02
3 4 3.947841 CACAACGGCGTGGTGGTG 61.948 66.667 34.23 24.43 34.13 4.17
9 10 4.671549 CAGCAGCACAACGGCGTG 62.672 66.667 15.70 10.75 45.09 5.34
12 13 3.044059 GATCCAGCAGCACAACGGC 62.044 63.158 0.00 0.00 40.15 5.68
13 14 1.364626 GAGATCCAGCAGCACAACGG 61.365 60.000 0.00 0.00 0.00 4.44
14 15 1.364626 GGAGATCCAGCAGCACAACG 61.365 60.000 0.00 0.00 35.64 4.10
15 16 0.321919 TGGAGATCCAGCAGCACAAC 60.322 55.000 0.00 0.00 42.01 3.32
16 17 2.068915 TGGAGATCCAGCAGCACAA 58.931 52.632 0.00 0.00 42.01 3.33
17 18 3.810255 TGGAGATCCAGCAGCACA 58.190 55.556 0.00 0.00 42.01 4.57
26 27 1.696884 GGGAGAGGTTGATGGAGATCC 59.303 57.143 0.00 0.00 0.00 3.36
27 28 2.632512 GAGGGAGAGGTTGATGGAGATC 59.367 54.545 0.00 0.00 0.00 2.75
28 29 2.688477 GAGGGAGAGGTTGATGGAGAT 58.312 52.381 0.00 0.00 0.00 2.75
29 30 1.343478 GGAGGGAGAGGTTGATGGAGA 60.343 57.143 0.00 0.00 0.00 3.71
30 31 1.127343 GGAGGGAGAGGTTGATGGAG 58.873 60.000 0.00 0.00 0.00 3.86
31 32 0.326618 GGGAGGGAGAGGTTGATGGA 60.327 60.000 0.00 0.00 0.00 3.41
32 33 1.348775 GGGGAGGGAGAGGTTGATGG 61.349 65.000 0.00 0.00 0.00 3.51
33 34 1.348775 GGGGGAGGGAGAGGTTGATG 61.349 65.000 0.00 0.00 0.00 3.07
34 35 1.004891 GGGGGAGGGAGAGGTTGAT 59.995 63.158 0.00 0.00 0.00 2.57
35 36 1.761780 AAGGGGGAGGGAGAGGTTGA 61.762 60.000 0.00 0.00 0.00 3.18
36 37 1.229984 AAGGGGGAGGGAGAGGTTG 60.230 63.158 0.00 0.00 0.00 3.77
37 38 1.229984 CAAGGGGGAGGGAGAGGTT 60.230 63.158 0.00 0.00 0.00 3.50
38 39 2.456840 CAAGGGGGAGGGAGAGGT 59.543 66.667 0.00 0.00 0.00 3.85
39 40 3.093172 GCAAGGGGGAGGGAGAGG 61.093 72.222 0.00 0.00 0.00 3.69
40 41 2.041928 AGCAAGGGGGAGGGAGAG 59.958 66.667 0.00 0.00 0.00 3.20
41 42 2.285668 CAGCAAGGGGGAGGGAGA 60.286 66.667 0.00 0.00 0.00 3.71
42 43 3.415087 CCAGCAAGGGGGAGGGAG 61.415 72.222 0.00 0.00 0.00 4.30
43 44 3.287954 ATCCAGCAAGGGGGAGGGA 62.288 63.158 0.00 0.00 36.45 4.20
44 45 2.697644 ATCCAGCAAGGGGGAGGG 60.698 66.667 0.00 0.00 36.45 4.30
45 46 1.574526 TTGATCCAGCAAGGGGGAGG 61.575 60.000 0.00 0.00 36.45 4.30
46 47 0.106819 CTTGATCCAGCAAGGGGGAG 60.107 60.000 0.00 0.00 41.15 4.30
47 48 0.549902 TCTTGATCCAGCAAGGGGGA 60.550 55.000 4.79 0.00 44.14 4.81
48 49 0.332632 TTCTTGATCCAGCAAGGGGG 59.667 55.000 4.79 0.00 44.14 5.40
49 50 1.684248 CCTTCTTGATCCAGCAAGGGG 60.684 57.143 4.79 4.42 44.14 4.79
50 51 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
51 52 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
52 53 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
53 54 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
54 55 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
55 56 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
56 57 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
57 58 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
58 59 2.100087 GACGTCTCCTCCTTCTTGATCC 59.900 54.545 8.70 0.00 0.00 3.36
59 60 3.020984 AGACGTCTCCTCCTTCTTGATC 58.979 50.000 13.58 0.00 0.00 2.92
60 61 3.094484 AGACGTCTCCTCCTTCTTGAT 57.906 47.619 13.58 0.00 0.00 2.57
61 62 2.588464 AGACGTCTCCTCCTTCTTGA 57.412 50.000 13.58 0.00 0.00 3.02
62 63 2.094442 GGAAGACGTCTCCTCCTTCTTG 60.094 54.545 23.46 0.00 36.28 3.02
63 64 2.172679 GGAAGACGTCTCCTCCTTCTT 58.827 52.381 23.46 4.82 36.28 2.52
64 65 1.617533 GGGAAGACGTCTCCTCCTTCT 60.618 57.143 27.43 8.78 36.28 2.85
65 66 0.818938 GGGAAGACGTCTCCTCCTTC 59.181 60.000 27.43 17.21 35.52 3.46
66 67 0.114560 TGGGAAGACGTCTCCTCCTT 59.885 55.000 27.43 10.16 0.00 3.36
67 68 0.114560 TTGGGAAGACGTCTCCTCCT 59.885 55.000 27.43 10.85 0.00 3.69
68 69 0.246910 GTTGGGAAGACGTCTCCTCC 59.753 60.000 22.91 22.91 0.00 4.30
69 70 0.246910 GGTTGGGAAGACGTCTCCTC 59.753 60.000 20.33 13.65 0.00 3.71
70 71 1.533469 CGGTTGGGAAGACGTCTCCT 61.533 60.000 20.33 3.47 0.00 3.69
71 72 1.080025 CGGTTGGGAAGACGTCTCC 60.080 63.158 20.33 19.97 0.00 3.71
72 73 0.883833 TACGGTTGGGAAGACGTCTC 59.116 55.000 20.33 12.14 40.38 3.36
73 74 0.600057 GTACGGTTGGGAAGACGTCT 59.400 55.000 13.58 13.58 40.38 4.18
74 75 0.730494 CGTACGGTTGGGAAGACGTC 60.730 60.000 7.70 7.70 40.38 4.34
75 76 1.286880 CGTACGGTTGGGAAGACGT 59.713 57.895 7.57 0.00 42.71 4.34
76 77 1.005294 CACGTACGGTTGGGAAGACG 61.005 60.000 21.06 0.00 36.42 4.18
77 78 0.032540 ACACGTACGGTTGGGAAGAC 59.967 55.000 21.06 0.00 0.00 3.01
78 79 0.032403 CACACGTACGGTTGGGAAGA 59.968 55.000 21.06 0.00 0.00 2.87
79 80 0.249573 ACACACGTACGGTTGGGAAG 60.250 55.000 21.06 4.49 0.00 3.46
80 81 0.177604 AACACACGTACGGTTGGGAA 59.822 50.000 21.06 0.00 0.00 3.97
81 82 0.530211 CAACACACGTACGGTTGGGA 60.530 55.000 21.06 0.00 38.52 4.37
82 83 0.530211 TCAACACACGTACGGTTGGG 60.530 55.000 25.39 17.76 41.59 4.12
83 84 1.004715 GTTCAACACACGTACGGTTGG 60.005 52.381 25.39 13.85 41.59 3.77
84 85 1.331334 CGTTCAACACACGTACGGTTG 60.331 52.381 22.19 22.19 42.39 3.77
85 86 0.922717 CGTTCAACACACGTACGGTT 59.077 50.000 21.06 11.24 32.80 4.44
86 87 1.481819 GCGTTCAACACACGTACGGT 61.482 55.000 21.06 11.73 39.92 4.83
87 88 1.199859 GCGTTCAACACACGTACGG 59.800 57.895 21.06 11.05 39.92 4.02
88 89 1.155158 CGCGTTCAACACACGTACG 60.155 57.895 15.01 15.01 39.92 3.67
89 90 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
90 91 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
91 92 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
92 93 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
93 94 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
94 95 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
95 96 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
96 97 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
97 98 3.723348 GGCACCTCCGCGTTCAAC 61.723 66.667 4.92 0.00 0.00 3.18
119 120 3.255379 GATGACCGAGCGCCGAAC 61.255 66.667 17.96 11.88 41.76 3.95
120 121 4.847516 CGATGACCGAGCGCCGAA 62.848 66.667 17.96 5.55 41.76 4.30
124 125 3.774959 ATCACCGATGACCGAGCGC 62.775 63.158 0.00 0.00 41.76 5.92
125 126 0.806102 AAATCACCGATGACCGAGCG 60.806 55.000 0.00 0.00 41.76 5.03
126 127 0.652592 CAAATCACCGATGACCGAGC 59.347 55.000 0.00 0.00 41.76 5.03
127 128 1.134818 TCCAAATCACCGATGACCGAG 60.135 52.381 0.00 0.00 41.76 4.63
128 129 0.899019 TCCAAATCACCGATGACCGA 59.101 50.000 0.00 0.00 41.76 4.69
129 130 1.867233 GATCCAAATCACCGATGACCG 59.133 52.381 0.00 0.00 37.79 4.79
130 131 2.917933 TGATCCAAATCACCGATGACC 58.082 47.619 0.00 0.00 37.79 4.02
138 139 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
139 140 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
140 141 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
141 142 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
142 143 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
143 144 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
144 145 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
145 146 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
146 147 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
147 148 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
148 149 0.319813 TGGAGTCGTACTCGTCGTGA 60.320 55.000 0.56 0.00 45.96 4.35
149 150 0.725686 ATGGAGTCGTACTCGTCGTG 59.274 55.000 8.33 0.00 45.96 4.35
150 151 1.005340 GATGGAGTCGTACTCGTCGT 58.995 55.000 8.33 0.00 45.96 4.34
151 152 1.004595 TGATGGAGTCGTACTCGTCG 58.995 55.000 8.33 0.00 45.96 5.12
152 153 2.477525 GGTTGATGGAGTCGTACTCGTC 60.478 54.545 8.33 9.13 45.96 4.20
153 154 1.471684 GGTTGATGGAGTCGTACTCGT 59.528 52.381 8.33 1.85 45.96 4.18
154 155 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
155 156 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
156 157 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
157 158 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
158 159 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
159 160 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
160 161 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
161 162 0.323629 TGAACGGGGTTGATGGAGTC 59.676 55.000 0.00 0.00 0.00 3.36
162 163 0.036306 GTGAACGGGGTTGATGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
163 164 0.324943 AGTGAACGGGGTTGATGGAG 59.675 55.000 0.00 0.00 0.00 3.86
164 165 0.768622 AAGTGAACGGGGTTGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
165 166 0.881118 CAAGTGAACGGGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
166 167 1.890876 TCAAGTGAACGGGGTTGATG 58.109 50.000 0.00 0.00 0.00 3.07
167 168 2.227194 GTTCAAGTGAACGGGGTTGAT 58.773 47.619 8.34 0.00 43.97 2.57
168 169 1.670791 GTTCAAGTGAACGGGGTTGA 58.329 50.000 8.34 0.00 43.97 3.18
189 190 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
190 191 0.248498 CTTGTAGATCGCGAGCGGAA 60.248 55.000 19.77 11.67 40.25 4.30
191 192 1.355563 CTTGTAGATCGCGAGCGGA 59.644 57.895 19.77 8.43 40.25 5.54
192 193 1.658717 CCTTGTAGATCGCGAGCGG 60.659 63.158 19.77 9.89 40.25 5.52
193 194 1.658717 CCCTTGTAGATCGCGAGCG 60.659 63.158 19.77 11.64 41.35 5.03
194 195 0.666913 TACCCTTGTAGATCGCGAGC 59.333 55.000 18.21 18.21 0.00 5.03
195 196 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
196 197 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
197 198 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
203 204 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
204 205 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
205 206 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
206 207 4.679373 AGAGTGCATCTACATACCCTTG 57.321 45.455 0.00 0.00 36.10 3.61
207 208 5.700402 AAAGAGTGCATCTACATACCCTT 57.300 39.130 0.00 0.00 37.23 3.95
208 209 5.396884 GGAAAAGAGTGCATCTACATACCCT 60.397 44.000 0.00 0.00 37.23 4.34
209 210 4.816925 GGAAAAGAGTGCATCTACATACCC 59.183 45.833 0.00 0.00 37.23 3.69
210 211 4.816925 GGGAAAAGAGTGCATCTACATACC 59.183 45.833 0.00 0.00 37.23 2.73
211 212 5.675538 AGGGAAAAGAGTGCATCTACATAC 58.324 41.667 0.00 0.00 37.23 2.39
212 213 5.663106 AGAGGGAAAAGAGTGCATCTACATA 59.337 40.000 0.00 0.00 37.23 2.29
213 214 4.472833 AGAGGGAAAAGAGTGCATCTACAT 59.527 41.667 0.00 0.00 37.23 2.29
214 215 3.840666 AGAGGGAAAAGAGTGCATCTACA 59.159 43.478 0.00 0.00 37.23 2.74
215 216 4.081420 TGAGAGGGAAAAGAGTGCATCTAC 60.081 45.833 0.00 0.00 37.23 2.59
216 217 4.096681 TGAGAGGGAAAAGAGTGCATCTA 58.903 43.478 0.00 0.00 37.23 1.98
217 218 2.909006 TGAGAGGGAAAAGAGTGCATCT 59.091 45.455 0.00 0.00 41.27 2.90
218 219 3.340814 TGAGAGGGAAAAGAGTGCATC 57.659 47.619 0.00 0.00 0.00 3.91
219 220 4.015084 CAATGAGAGGGAAAAGAGTGCAT 58.985 43.478 0.00 0.00 0.00 3.96
220 221 3.415212 CAATGAGAGGGAAAAGAGTGCA 58.585 45.455 0.00 0.00 0.00 4.57
221 222 2.163211 GCAATGAGAGGGAAAAGAGTGC 59.837 50.000 0.00 0.00 0.00 4.40
222 223 3.683802 AGCAATGAGAGGGAAAAGAGTG 58.316 45.455 0.00 0.00 0.00 3.51
223 224 4.780021 TCTAGCAATGAGAGGGAAAAGAGT 59.220 41.667 0.00 0.00 0.00 3.24
224 225 5.350504 TCTAGCAATGAGAGGGAAAAGAG 57.649 43.478 0.00 0.00 0.00 2.85
225 226 5.485353 TCTTCTAGCAATGAGAGGGAAAAGA 59.515 40.000 0.00 0.00 0.00 2.52
226 227 5.584251 GTCTTCTAGCAATGAGAGGGAAAAG 59.416 44.000 0.00 0.00 0.00 2.27
227 228 5.249393 AGTCTTCTAGCAATGAGAGGGAAAA 59.751 40.000 0.00 0.00 0.00 2.29
228 229 4.780021 AGTCTTCTAGCAATGAGAGGGAAA 59.220 41.667 0.00 0.00 0.00 3.13
229 230 4.357325 AGTCTTCTAGCAATGAGAGGGAA 58.643 43.478 0.00 0.00 0.00 3.97
230 231 3.957497 GAGTCTTCTAGCAATGAGAGGGA 59.043 47.826 0.00 0.00 0.00 4.20
231 232 3.069443 GGAGTCTTCTAGCAATGAGAGGG 59.931 52.174 0.00 0.00 0.00 4.30
232 233 3.703556 TGGAGTCTTCTAGCAATGAGAGG 59.296 47.826 0.00 0.00 0.00 3.69
233 234 4.998671 TGGAGTCTTCTAGCAATGAGAG 57.001 45.455 0.00 0.00 0.00 3.20
234 235 6.368805 TCTATGGAGTCTTCTAGCAATGAGA 58.631 40.000 0.00 0.00 0.00 3.27
235 236 6.647334 TCTATGGAGTCTTCTAGCAATGAG 57.353 41.667 0.00 0.00 0.00 2.90
236 237 7.070447 ACAATCTATGGAGTCTTCTAGCAATGA 59.930 37.037 0.00 0.00 0.00 2.57
237 238 7.215789 ACAATCTATGGAGTCTTCTAGCAATG 58.784 38.462 0.00 0.00 0.00 2.82
238 239 7.372260 ACAATCTATGGAGTCTTCTAGCAAT 57.628 36.000 0.00 0.00 0.00 3.56
239 240 6.798427 ACAATCTATGGAGTCTTCTAGCAA 57.202 37.500 0.00 0.00 0.00 3.91
240 241 6.609212 AGAACAATCTATGGAGTCTTCTAGCA 59.391 38.462 0.00 0.00 32.88 3.49
241 242 7.049799 AGAACAATCTATGGAGTCTTCTAGC 57.950 40.000 0.00 0.00 32.88 3.42
242 243 7.925483 CCAAGAACAATCTATGGAGTCTTCTAG 59.075 40.741 0.00 0.00 36.64 2.43
243 244 7.400339 ACCAAGAACAATCTATGGAGTCTTCTA 59.600 37.037 0.00 0.00 37.33 2.10
244 245 6.214412 ACCAAGAACAATCTATGGAGTCTTCT 59.786 38.462 11.44 0.00 37.33 2.85
245 246 6.314896 CACCAAGAACAATCTATGGAGTCTTC 59.685 42.308 11.44 0.00 37.33 2.87
246 247 6.013379 TCACCAAGAACAATCTATGGAGTCTT 60.013 38.462 11.44 0.00 37.33 3.01
247 248 5.485353 TCACCAAGAACAATCTATGGAGTCT 59.515 40.000 11.44 0.00 37.33 3.24
248 249 5.734720 TCACCAAGAACAATCTATGGAGTC 58.265 41.667 11.44 0.00 37.33 3.36
249 250 5.762179 TCACCAAGAACAATCTATGGAGT 57.238 39.130 11.44 0.00 37.33 3.85
250 251 5.008415 GCATCACCAAGAACAATCTATGGAG 59.992 44.000 11.44 6.29 37.33 3.86
251 252 4.883585 GCATCACCAAGAACAATCTATGGA 59.116 41.667 11.44 0.00 37.33 3.41
252 253 4.260907 CGCATCACCAAGAACAATCTATGG 60.261 45.833 0.00 0.00 38.62 2.74
253 254 4.333649 ACGCATCACCAAGAACAATCTATG 59.666 41.667 0.00 0.00 33.77 2.23
254 255 4.517285 ACGCATCACCAAGAACAATCTAT 58.483 39.130 0.00 0.00 33.77 1.98
255 256 3.937814 ACGCATCACCAAGAACAATCTA 58.062 40.909 0.00 0.00 33.77 1.98
256 257 2.783135 ACGCATCACCAAGAACAATCT 58.217 42.857 0.00 0.00 37.57 2.40
257 258 3.932710 TCTACGCATCACCAAGAACAATC 59.067 43.478 0.00 0.00 0.00 2.67
258 259 3.937814 TCTACGCATCACCAAGAACAAT 58.062 40.909 0.00 0.00 0.00 2.71
259 260 3.394674 TCTACGCATCACCAAGAACAA 57.605 42.857 0.00 0.00 0.00 2.83
260 261 3.394674 TTCTACGCATCACCAAGAACA 57.605 42.857 0.00 0.00 0.00 3.18
261 262 4.742438 TTTTCTACGCATCACCAAGAAC 57.258 40.909 0.00 0.00 0.00 3.01
262 263 5.957842 AATTTTCTACGCATCACCAAGAA 57.042 34.783 0.00 0.00 0.00 2.52
263 264 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
264 265 8.687824 ATTAAAATTTTCTACGCATCACCAAG 57.312 30.769 6.72 0.00 0.00 3.61
265 266 9.482627 AAATTAAAATTTTCTACGCATCACCAA 57.517 25.926 6.72 0.00 35.16 3.67
266 267 9.134734 GAAATTAAAATTTTCTACGCATCACCA 57.865 29.630 6.72 0.00 38.64 4.17
267 268 9.353999 AGAAATTAAAATTTTCTACGCATCACC 57.646 29.630 6.72 0.00 38.64 4.02
269 270 8.859156 GCAGAAATTAAAATTTTCTACGCATCA 58.141 29.630 6.72 0.00 38.64 3.07
270 271 8.859156 TGCAGAAATTAAAATTTTCTACGCATC 58.141 29.630 6.72 0.00 38.64 3.91
271 272 8.755696 TGCAGAAATTAAAATTTTCTACGCAT 57.244 26.923 6.72 0.00 38.64 4.73
272 273 8.484008 GTTGCAGAAATTAAAATTTTCTACGCA 58.516 29.630 6.72 6.02 38.64 5.24
273 274 7.678428 CGTTGCAGAAATTAAAATTTTCTACGC 59.322 33.333 6.72 3.58 38.64 4.42
274 275 8.897809 TCGTTGCAGAAATTAAAATTTTCTACG 58.102 29.630 6.72 9.14 38.64 3.51
277 278 8.925700 GGATCGTTGCAGAAATTAAAATTTTCT 58.074 29.630 6.72 0.00 38.64 2.52
278 279 8.168626 GGGATCGTTGCAGAAATTAAAATTTTC 58.831 33.333 6.72 0.00 38.64 2.29
279 280 7.119116 GGGGATCGTTGCAGAAATTAAAATTTT 59.881 33.333 8.75 8.75 38.64 1.82
280 281 6.593770 GGGGATCGTTGCAGAAATTAAAATTT 59.406 34.615 0.37 0.37 41.06 1.82
281 282 6.106003 GGGGATCGTTGCAGAAATTAAAATT 58.894 36.000 0.00 0.00 0.00 1.82
282 283 5.186797 TGGGGATCGTTGCAGAAATTAAAAT 59.813 36.000 0.00 0.00 0.00 1.82
283 284 4.524714 TGGGGATCGTTGCAGAAATTAAAA 59.475 37.500 0.00 0.00 0.00 1.52
284 285 4.082845 TGGGGATCGTTGCAGAAATTAAA 58.917 39.130 0.00 0.00 0.00 1.52
285 286 3.691575 TGGGGATCGTTGCAGAAATTAA 58.308 40.909 0.00 0.00 0.00 1.40
286 287 3.358111 TGGGGATCGTTGCAGAAATTA 57.642 42.857 0.00 0.00 0.00 1.40
287 288 2.214376 TGGGGATCGTTGCAGAAATT 57.786 45.000 0.00 0.00 0.00 1.82
288 289 1.818674 GTTGGGGATCGTTGCAGAAAT 59.181 47.619 0.00 0.00 0.00 2.17
289 290 1.243902 GTTGGGGATCGTTGCAGAAA 58.756 50.000 0.00 0.00 0.00 2.52
290 291 0.109532 TGTTGGGGATCGTTGCAGAA 59.890 50.000 0.00 0.00 0.00 3.02
291 292 0.605319 GTGTTGGGGATCGTTGCAGA 60.605 55.000 0.00 0.00 0.00 4.26
292 293 1.586154 GGTGTTGGGGATCGTTGCAG 61.586 60.000 0.00 0.00 0.00 4.41
293 294 1.602323 GGTGTTGGGGATCGTTGCA 60.602 57.895 0.00 0.00 0.00 4.08
294 295 2.340328 GGGTGTTGGGGATCGTTGC 61.340 63.158 0.00 0.00 0.00 4.17
295 296 0.676782 GAGGGTGTTGGGGATCGTTG 60.677 60.000 0.00 0.00 0.00 4.10
296 297 1.683441 GAGGGTGTTGGGGATCGTT 59.317 57.895 0.00 0.00 0.00 3.85
297 298 2.656069 CGAGGGTGTTGGGGATCGT 61.656 63.158 0.00 0.00 0.00 3.73
298 299 2.186903 CGAGGGTGTTGGGGATCG 59.813 66.667 0.00 0.00 0.00 3.69
299 300 1.221021 GACGAGGGTGTTGGGGATC 59.779 63.158 0.00 0.00 0.00 3.36
300 301 2.298661 GGACGAGGGTGTTGGGGAT 61.299 63.158 0.00 0.00 0.00 3.85
301 302 2.926242 GGACGAGGGTGTTGGGGA 60.926 66.667 0.00 0.00 0.00 4.81
302 303 2.928396 AGGACGAGGGTGTTGGGG 60.928 66.667 0.00 0.00 0.00 4.96
303 304 1.764571 TTGAGGACGAGGGTGTTGGG 61.765 60.000 0.00 0.00 0.00 4.12
304 305 0.320771 CTTGAGGACGAGGGTGTTGG 60.321 60.000 0.00 0.00 0.00 3.77
305 306 0.951040 GCTTGAGGACGAGGGTGTTG 60.951 60.000 0.00 0.00 0.00 3.33
306 307 1.122019 AGCTTGAGGACGAGGGTGTT 61.122 55.000 0.00 0.00 0.00 3.32
307 308 1.534235 AGCTTGAGGACGAGGGTGT 60.534 57.895 0.00 0.00 0.00 4.16
308 309 1.079543 CAGCTTGAGGACGAGGGTG 60.080 63.158 0.00 0.00 0.00 4.61
309 310 2.948720 GCAGCTTGAGGACGAGGGT 61.949 63.158 0.00 0.00 0.00 4.34
352 353 0.471211 AGGAACAGTGAGAACGGGGA 60.471 55.000 0.00 0.00 0.00 4.81
357 358 4.529109 AGCTAGAAGGAACAGTGAGAAC 57.471 45.455 0.00 0.00 0.00 3.01
408 409 3.947196 GACCACTAATCAACCATGCATCA 59.053 43.478 0.00 0.00 0.00 3.07
435 436 3.719268 ACCAACCATATCAGCTCACAA 57.281 42.857 0.00 0.00 0.00 3.33
484 485 1.952296 CATGCTTGAACATCTAGCCCC 59.048 52.381 10.46 0.00 43.03 5.80
544 545 2.029649 AGCATGATTCAACACAAGCACC 60.030 45.455 0.00 0.00 33.97 5.01
711 731 3.753272 GCACACAACATACCAGACAATCT 59.247 43.478 0.00 0.00 0.00 2.40
1303 1352 4.783227 ACAGTATGAAAAGGAAGAGGGCTA 59.217 41.667 0.00 0.00 39.69 3.93
1487 1537 0.912006 GAGAACCAAGAGGCTCCCCT 60.912 60.000 11.71 0.00 46.74 4.79
1508 1558 0.044092 TCCCAGGGAAGTCAGGCATA 59.956 55.000 5.36 0.00 0.00 3.14
1632 1684 4.695396 CAGAAGACATTGATCTCCTCCTG 58.305 47.826 0.00 0.00 0.00 3.86
2077 2157 4.536090 ACCTACCATCACATCCAAAAGAGA 59.464 41.667 0.00 0.00 0.00 3.10
2290 2378 6.652205 TTCTTCCCATGAACTATAAACCCT 57.348 37.500 0.00 0.00 0.00 4.34
2479 2567 0.973632 TTCAGCTTCAGGCCGAACTA 59.026 50.000 0.00 0.00 43.05 2.24
2541 2629 2.034879 CCTAGCACACCAACGCCAG 61.035 63.158 0.00 0.00 0.00 4.85
2583 2671 4.020839 GTGCTTACCTTGTACCCTAGTTGA 60.021 45.833 0.00 0.00 0.00 3.18
2636 2724 2.479566 CCCTAGCGGCATATGAACAT 57.520 50.000 6.97 0.00 0.00 2.71
2665 2753 3.327464 CGCAAGTGCACTTTGTTGT 57.673 47.368 29.23 4.82 42.21 3.32
2683 2776 7.147707 CCCTAGTCCCTGCATTAGGTAATATAC 60.148 44.444 0.00 0.00 45.80 1.47
2684 2777 6.901300 CCCTAGTCCCTGCATTAGGTAATATA 59.099 42.308 0.00 0.00 45.80 0.86
2738 2831 4.352893 AGCAAAAACAGGCCCTAATACAT 58.647 39.130 0.00 0.00 0.00 2.29
2739 2832 3.761752 GAGCAAAAACAGGCCCTAATACA 59.238 43.478 0.00 0.00 0.00 2.29
2793 2886 5.221481 TGGTTGTCGTTGTCAATAGTTCCTA 60.221 40.000 0.00 0.00 0.00 2.94
2801 2894 3.729462 CGTGTTTGGTTGTCGTTGTCAAT 60.729 43.478 0.00 0.00 0.00 2.57
2827 2920 4.635769 TCGGCCATCGATTGCTTT 57.364 50.000 19.64 0.00 43.74 3.51
2849 2942 4.537433 ATGCTCTCCTTCGCCGCC 62.537 66.667 0.00 0.00 0.00 6.13
2850 2943 3.267860 CATGCTCTCCTTCGCCGC 61.268 66.667 0.00 0.00 0.00 6.53
2851 2944 1.880340 GACATGCTCTCCTTCGCCG 60.880 63.158 0.00 0.00 0.00 6.46
2852 2945 1.880340 CGACATGCTCTCCTTCGCC 60.880 63.158 0.00 0.00 0.00 5.54
2853 2946 0.737715 AACGACATGCTCTCCTTCGC 60.738 55.000 0.00 0.00 32.91 4.70
2854 2947 1.272781 GAACGACATGCTCTCCTTCG 58.727 55.000 0.00 0.00 35.80 3.79
2855 2948 2.094494 TCTGAACGACATGCTCTCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
2856 2949 1.895798 TCTGAACGACATGCTCTCCTT 59.104 47.619 0.00 0.00 0.00 3.36
2857 2950 1.550327 TCTGAACGACATGCTCTCCT 58.450 50.000 0.00 0.00 0.00 3.69
2858 2951 2.159184 TCATCTGAACGACATGCTCTCC 60.159 50.000 0.00 0.00 0.00 3.71
2859 2952 3.156511 TCATCTGAACGACATGCTCTC 57.843 47.619 0.00 0.00 0.00 3.20
2860 2953 3.455327 CATCATCTGAACGACATGCTCT 58.545 45.455 0.00 0.00 0.00 4.09
2861 2954 2.543012 CCATCATCTGAACGACATGCTC 59.457 50.000 0.00 0.00 0.00 4.26
2862 2955 2.558378 CCATCATCTGAACGACATGCT 58.442 47.619 0.00 0.00 0.00 3.79
2863 2956 1.003116 GCCATCATCTGAACGACATGC 60.003 52.381 0.00 0.00 0.00 4.06
2864 2957 2.287103 CAGCCATCATCTGAACGACATG 59.713 50.000 0.00 0.00 33.54 3.21
2865 2958 2.558378 CAGCCATCATCTGAACGACAT 58.442 47.619 0.00 0.00 33.54 3.06
2866 2959 1.405933 CCAGCCATCATCTGAACGACA 60.406 52.381 0.00 0.00 33.54 4.35
2867 2960 1.293924 CCAGCCATCATCTGAACGAC 58.706 55.000 0.00 0.00 33.54 4.34
2868 2961 0.462581 GCCAGCCATCATCTGAACGA 60.463 55.000 0.00 0.00 33.54 3.85
2869 2962 1.769098 CGCCAGCCATCATCTGAACG 61.769 60.000 0.00 0.00 33.54 3.95
2870 2963 1.442526 CCGCCAGCCATCATCTGAAC 61.443 60.000 0.00 0.00 33.54 3.18
2871 2964 1.153107 CCGCCAGCCATCATCTGAA 60.153 57.895 0.00 0.00 33.54 3.02
2872 2965 2.507452 CCGCCAGCCATCATCTGA 59.493 61.111 0.00 0.00 33.54 3.27
2873 2966 3.285215 GCCGCCAGCCATCATCTG 61.285 66.667 0.00 0.00 34.35 2.90
2874 2967 3.472943 GAGCCGCCAGCCATCATCT 62.473 63.158 0.00 0.00 45.47 2.90
2875 2968 2.976903 GAGCCGCCAGCCATCATC 60.977 66.667 0.00 0.00 45.47 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.