Multiple sequence alignment - TraesCS2D01G139400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G139400 chr2D 100.000 6056 0 0 1 6056 82186194 82180139 0.000000e+00 11184
1 TraesCS2D01G139400 chr2D 83.077 1430 148 38 1672 3028 82189287 82187879 0.000000e+00 1214
2 TraesCS2D01G139400 chr2D 85.014 694 61 17 4607 5284 82186300 82185634 0.000000e+00 665
3 TraesCS2D01G139400 chr2D 85.026 581 50 13 6 561 82181479 82180911 1.910000e-154 556
4 TraesCS2D01G139400 chr2D 87.810 443 49 5 3684 4122 82187159 82186718 1.160000e-141 514
5 TraesCS2D01G139400 chr2D 78.059 711 67 39 934 1594 82189993 82189322 3.450000e-97 366
6 TraesCS2D01G139400 chr2D 88.421 95 7 4 4179 4271 96798682 96798774 1.780000e-20 111
7 TraesCS2D01G139400 chr2A 94.064 4801 165 47 698 5468 82349742 82345032 0.000000e+00 7177
8 TraesCS2D01G139400 chr2A 82.463 1437 155 43 1672 3028 82353740 82352321 0.000000e+00 1168
9 TraesCS2D01G139400 chr2A 91.453 702 23 4 1 699 82350507 82349840 0.000000e+00 929
10 TraesCS2D01G139400 chr2A 85.754 723 74 12 4600 5315 82350620 82349920 0.000000e+00 737
11 TraesCS2D01G139400 chr2A 86.043 652 68 15 3043 3680 82352334 82351692 0.000000e+00 678
12 TraesCS2D01G139400 chr2A 92.841 447 17 10 5549 5981 82344896 82344451 8.560000e-178 634
13 TraesCS2D01G139400 chr2A 87.945 506 58 3 3684 4186 82351582 82351077 1.450000e-165 593
14 TraesCS2D01G139400 chr2A 82.961 716 59 39 962 1654 82354811 82354136 6.760000e-164 588
15 TraesCS2D01G139400 chr2A 83.681 576 58 14 6 557 82345785 82345222 1.510000e-140 510
16 TraesCS2D01G139400 chr2A 94.667 75 4 0 5982 6056 82344415 82344341 3.840000e-22 117
17 TraesCS2D01G139400 chr2B 92.189 2010 88 30 3978 5981 134045749 134043803 0.000000e+00 2778
18 TraesCS2D01G139400 chr2B 94.281 1836 72 12 1201 3005 134049017 134047184 0.000000e+00 2778
19 TraesCS2D01G139400 chr2B 96.472 992 26 2 2996 3980 134046899 134045910 0.000000e+00 1629
20 TraesCS2D01G139400 chr2B 87.828 723 61 10 4600 5314 134090703 134090000 0.000000e+00 822
21 TraesCS2D01G139400 chr2B 91.930 570 30 6 1 561 134090591 134090029 0.000000e+00 784
22 TraesCS2D01G139400 chr2B 85.423 686 74 14 3043 3710 134092351 134091674 0.000000e+00 689
23 TraesCS2D01G139400 chr2B 86.823 554 55 12 1672 2214 134093715 134093169 2.410000e-168 603
24 TraesCS2D01G139400 chr2B 80.220 819 92 37 2269 3028 134093145 134092338 8.870000e-153 551
25 TraesCS2D01G139400 chr2B 84.201 576 55 14 6 557 134045032 134044469 1.500000e-145 527
26 TraesCS2D01G139400 chr2B 81.006 716 66 37 973 1655 134094834 134094156 7.010000e-139 505
27 TraesCS2D01G139400 chr4D 91.579 95 3 5 4186 4278 34660035 34659944 6.370000e-25 126
28 TraesCS2D01G139400 chr6B 91.954 87 7 0 4185 4271 124550588 124550502 8.240000e-24 122
29 TraesCS2D01G139400 chr1A 91.765 85 6 1 4192 4275 343398331 343398415 3.840000e-22 117
30 TraesCS2D01G139400 chr5D 89.888 89 5 4 4186 4272 278271122 278271036 1.780000e-20 111
31 TraesCS2D01G139400 chr1B 89.888 89 5 4 4186 4272 288805396 288805482 1.780000e-20 111
32 TraesCS2D01G139400 chr1B 93.878 49 3 0 722 770 578093855 578093807 2.340000e-09 75
33 TraesCS2D01G139400 chr4A 87.234 94 8 4 4180 4271 581944255 581944346 2.990000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G139400 chr2D 82180139 82186194 6055 True 11184.000000 11184 100.000000 1 6056 1 chr2D.!!$R1 6055
1 TraesCS2D01G139400 chr2D 82185634 82189993 4359 True 689.750000 1214 83.490000 934 5284 4 chr2D.!!$R3 4350
2 TraesCS2D01G139400 chr2D 82180911 82181479 568 True 556.000000 556 85.026000 6 561 1 chr2D.!!$R2 555
3 TraesCS2D01G139400 chr2A 82344341 82349742 5401 True 2642.666667 7177 93.857333 698 6056 3 chr2A.!!$R2 5358
4 TraesCS2D01G139400 chr2A 82349840 82354811 4971 True 782.166667 1168 86.103167 1 5315 6 chr2A.!!$R3 5314
5 TraesCS2D01G139400 chr2A 82345222 82345785 563 True 510.000000 510 83.681000 6 557 1 chr2A.!!$R1 551
6 TraesCS2D01G139400 chr2B 134043803 134049017 5214 True 1928.000000 2778 91.785750 6 5981 4 chr2B.!!$R1 5975
7 TraesCS2D01G139400 chr2B 134090000 134094834 4834 True 659.000000 822 85.538333 1 5314 6 chr2B.!!$R2 5313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.036010 AGTTCCACCATCCGCAAGAG 60.036 55.000 0.00 0.0 43.02 2.85 F
1114 1124 0.036164 CCATCGAACCAACTGACCCA 59.964 55.000 0.00 0.0 0.00 4.51 F
1654 1723 0.254462 TCCCGCAGCCATGAATGTTA 59.746 50.000 0.00 0.0 0.00 2.41 F
1821 1890 3.119602 TCAAGGACTGCTGTGACGTATAC 60.120 47.826 0.00 0.0 0.00 1.47 F
3319 3775 1.145803 GCACGTTTAGTCAGTGGTCC 58.854 55.000 0.00 0.0 36.48 4.46 F
3451 3918 2.511600 GATTGCGAGGGTCGTGGG 60.512 66.667 0.00 0.0 42.81 4.61 F
3961 4512 4.221703 AGACAAGTGACCACAGAATAGAGG 59.778 45.833 2.78 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1412 1.675641 GCAGCAGTTGACGGGGATT 60.676 57.895 0.00 0.00 0.00 3.01 R
2609 2731 2.375509 GGAAAGGAACTCCAGGGAGAAA 59.624 50.000 21.73 0.00 44.53 2.52 R
2943 3090 2.928334 ACTGGTCCATGAGATGAATGC 58.072 47.619 0.00 0.00 0.00 3.56 R
3451 3918 3.055385 TGCAAGTAGGACATGGTACCTTC 60.055 47.826 14.36 6.82 37.68 3.46 R
4437 5256 3.128764 GCCCTACTGGTTTGCTGATAAAC 59.871 47.826 0.00 0.00 39.28 2.01 R
4639 5512 4.276926 AGAAATTGCAAGTCAGACCAAGAC 59.723 41.667 4.94 0.00 36.26 3.01 R
5838 6827 0.442699 GACGATTCTTGGCCGTGTTC 59.557 55.000 0.00 0.00 36.60 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.394836 GGAGCTGCTTCGGTCCCT 61.395 66.667 2.53 0.00 43.94 4.20
19 20 2.125350 GAGCTGCTTCGGTCCCTG 60.125 66.667 2.53 0.00 0.00 4.45
21 22 2.435059 GCTGCTTCGGTCCCTGAC 60.435 66.667 0.00 0.00 0.00 3.51
22 23 2.125912 CTGCTTCGGTCCCTGACG 60.126 66.667 0.00 0.00 32.65 4.35
23 24 2.599281 TGCTTCGGTCCCTGACGA 60.599 61.111 0.00 0.00 37.33 4.20
24 25 2.154798 CTGCTTCGGTCCCTGACGAA 62.155 60.000 0.00 0.00 45.61 3.85
40 41 0.110644 CGAAGTTTTCCACAGAGCGC 60.111 55.000 0.00 0.00 0.00 5.92
41 42 0.944386 GAAGTTTTCCACAGAGCGCA 59.056 50.000 11.47 0.00 0.00 6.09
42 43 1.333619 GAAGTTTTCCACAGAGCGCAA 59.666 47.619 11.47 0.00 0.00 4.85
43 44 0.947244 AGTTTTCCACAGAGCGCAAG 59.053 50.000 11.47 0.19 43.44 4.01
44 45 0.040067 GTTTTCCACAGAGCGCAAGG 60.040 55.000 11.47 3.48 38.28 3.61
45 46 1.172180 TTTTCCACAGAGCGCAAGGG 61.172 55.000 11.47 3.45 38.28 3.95
46 47 3.551496 TTCCACAGAGCGCAAGGGG 62.551 63.158 11.47 9.74 38.28 4.79
72 73 5.751680 CAACTATGCAACATACAGGCATAC 58.248 41.667 0.00 0.00 45.72 2.39
73 74 4.389374 ACTATGCAACATACAGGCATACC 58.611 43.478 0.00 0.00 45.72 2.73
75 76 3.078891 TGCAACATACAGGCATACCAA 57.921 42.857 0.00 0.00 39.06 3.67
76 77 3.630168 TGCAACATACAGGCATACCAAT 58.370 40.909 0.00 0.00 39.06 3.16
77 78 3.380954 TGCAACATACAGGCATACCAATG 59.619 43.478 0.00 0.00 39.06 2.82
88 89 2.372264 CATACCAATGCACTCCAGCTT 58.628 47.619 0.00 0.00 34.99 3.74
89 90 2.584835 TACCAATGCACTCCAGCTTT 57.415 45.000 0.00 0.00 34.99 3.51
91 92 1.202976 ACCAATGCACTCCAGCTTTCT 60.203 47.619 0.00 0.00 34.99 2.52
92 93 1.891150 CCAATGCACTCCAGCTTTCTT 59.109 47.619 0.00 0.00 34.99 2.52
94 95 3.314553 CAATGCACTCCAGCTTTCTTTG 58.685 45.455 0.00 0.00 34.99 2.77
95 96 0.670162 TGCACTCCAGCTTTCTTTGC 59.330 50.000 0.00 0.00 34.99 3.68
96 97 0.038801 GCACTCCAGCTTTCTTTGCC 60.039 55.000 0.00 0.00 0.00 4.52
97 98 0.239347 CACTCCAGCTTTCTTTGCCG 59.761 55.000 0.00 0.00 0.00 5.69
98 99 0.108585 ACTCCAGCTTTCTTTGCCGA 59.891 50.000 0.00 0.00 0.00 5.54
99 100 1.271597 ACTCCAGCTTTCTTTGCCGAT 60.272 47.619 0.00 0.00 0.00 4.18
100 101 1.815003 CTCCAGCTTTCTTTGCCGATT 59.185 47.619 0.00 0.00 0.00 3.34
103 104 2.165030 CCAGCTTTCTTTGCCGATTCAT 59.835 45.455 0.00 0.00 0.00 2.57
104 105 3.378112 CCAGCTTTCTTTGCCGATTCATA 59.622 43.478 0.00 0.00 0.00 2.15
106 107 3.378427 AGCTTTCTTTGCCGATTCATACC 59.622 43.478 0.00 0.00 0.00 2.73
108 109 3.358111 TTCTTTGCCGATTCATACCCA 57.642 42.857 0.00 0.00 0.00 4.51
110 111 2.238646 TCTTTGCCGATTCATACCCACT 59.761 45.455 0.00 0.00 0.00 4.00
111 112 2.325583 TTGCCGATTCATACCCACTC 57.674 50.000 0.00 0.00 0.00 3.51
112 113 1.199615 TGCCGATTCATACCCACTCA 58.800 50.000 0.00 0.00 0.00 3.41
113 114 1.557371 TGCCGATTCATACCCACTCAA 59.443 47.619 0.00 0.00 0.00 3.02
114 115 1.940613 GCCGATTCATACCCACTCAAC 59.059 52.381 0.00 0.00 0.00 3.18
116 117 2.093181 CCGATTCATACCCACTCAACCA 60.093 50.000 0.00 0.00 0.00 3.67
117 118 3.198068 CGATTCATACCCACTCAACCAG 58.802 50.000 0.00 0.00 0.00 4.00
118 119 3.369471 CGATTCATACCCACTCAACCAGT 60.369 47.826 0.00 0.00 34.67 4.00
119 120 4.589908 GATTCATACCCACTCAACCAGTT 58.410 43.478 0.00 0.00 30.26 3.16
120 121 3.695830 TCATACCCACTCAACCAGTTC 57.304 47.619 0.00 0.00 30.26 3.01
123 124 0.393077 ACCCACTCAACCAGTTCTCG 59.607 55.000 0.00 0.00 30.26 4.04
124 125 0.393077 CCCACTCAACCAGTTCTCGT 59.607 55.000 0.00 0.00 30.26 4.18
126 127 1.409412 CACTCAACCAGTTCTCGTCG 58.591 55.000 0.00 0.00 30.26 5.12
127 128 0.314302 ACTCAACCAGTTCTCGTCGG 59.686 55.000 0.00 0.00 26.56 4.79
128 129 0.596577 CTCAACCAGTTCTCGTCGGA 59.403 55.000 0.00 0.00 0.00 4.55
129 130 0.596577 TCAACCAGTTCTCGTCGGAG 59.403 55.000 0.00 0.00 41.89 4.63
137 138 1.428219 TCTCGTCGGAGATTGTCGC 59.572 57.895 0.00 0.00 44.28 5.19
138 139 1.025113 TCTCGTCGGAGATTGTCGCT 61.025 55.000 0.00 0.00 44.28 4.93
139 140 0.656259 CTCGTCGGAGATTGTCGCTA 59.344 55.000 0.00 0.00 43.27 4.26
140 141 0.656259 TCGTCGGAGATTGTCGCTAG 59.344 55.000 0.00 0.00 40.67 3.42
142 143 0.595310 GTCGGAGATTGTCGCTAGCC 60.595 60.000 9.66 0.00 40.67 3.93
143 144 1.658717 CGGAGATTGTCGCTAGCCG 60.659 63.158 9.66 4.62 38.61 5.52
144 145 1.300233 GGAGATTGTCGCTAGCCGG 60.300 63.158 9.66 0.00 37.59 6.13
145 146 1.951631 GAGATTGTCGCTAGCCGGC 60.952 63.158 21.89 21.89 43.18 6.13
146 147 2.107141 GATTGTCGCTAGCCGGCT 59.893 61.111 34.85 34.85 43.31 5.52
147 148 2.202932 ATTGTCGCTAGCCGGCTG 60.203 61.111 38.98 27.28 43.31 4.85
153 154 4.785453 GCTAGCCGGCTGCCAGTT 62.785 66.667 38.98 13.82 42.71 3.16
155 156 4.096003 TAGCCGGCTGCCAGTTCC 62.096 66.667 38.98 0.00 42.71 3.62
159 160 4.641645 CGGCTGCCAGTTCCACCA 62.642 66.667 20.29 0.00 0.00 4.17
161 162 2.048603 GGCTGCCAGTTCCACCATC 61.049 63.158 15.17 0.00 0.00 3.51
162 163 2.048603 GCTGCCAGTTCCACCATCC 61.049 63.158 0.00 0.00 0.00 3.51
163 164 1.746615 CTGCCAGTTCCACCATCCG 60.747 63.158 0.00 0.00 0.00 4.18
165 166 2.350895 CCAGTTCCACCATCCGCA 59.649 61.111 0.00 0.00 0.00 5.69
166 167 1.303236 CCAGTTCCACCATCCGCAA 60.303 57.895 0.00 0.00 0.00 4.85
168 169 0.321564 CAGTTCCACCATCCGCAAGA 60.322 55.000 0.00 0.00 43.02 3.02
169 170 0.036010 AGTTCCACCATCCGCAAGAG 60.036 55.000 0.00 0.00 43.02 2.85
170 171 0.321653 GTTCCACCATCCGCAAGAGT 60.322 55.000 0.00 0.00 43.02 3.24
171 172 1.066430 GTTCCACCATCCGCAAGAGTA 60.066 52.381 0.00 0.00 43.02 2.59
172 173 1.271856 TCCACCATCCGCAAGAGTAA 58.728 50.000 0.00 0.00 43.02 2.24
174 175 2.238646 TCCACCATCCGCAAGAGTAATT 59.761 45.455 0.00 0.00 43.02 1.40
176 177 3.065371 CCACCATCCGCAAGAGTAATTTC 59.935 47.826 0.00 0.00 43.02 2.17
177 178 2.936498 ACCATCCGCAAGAGTAATTTCG 59.064 45.455 0.00 0.00 43.02 3.46
178 179 2.287915 CCATCCGCAAGAGTAATTTCGG 59.712 50.000 0.00 0.00 43.02 4.30
181 182 2.494471 TCCGCAAGAGTAATTTCGGAGA 59.506 45.455 0.00 0.00 40.62 3.71
183 184 3.428999 CCGCAAGAGTAATTTCGGAGAGA 60.429 47.826 0.00 0.00 39.23 3.10
184 185 3.548268 CGCAAGAGTAATTTCGGAGAGAC 59.452 47.826 0.00 0.00 37.44 3.36
185 186 4.495422 GCAAGAGTAATTTCGGAGAGACA 58.505 43.478 0.00 0.00 38.43 3.41
186 187 4.327627 GCAAGAGTAATTTCGGAGAGACAC 59.672 45.833 0.00 0.00 38.43 3.67
187 188 5.470368 CAAGAGTAATTTCGGAGAGACACA 58.530 41.667 0.00 0.00 38.43 3.72
189 190 5.897050 AGAGTAATTTCGGAGAGACACATC 58.103 41.667 0.00 0.00 38.43 3.06
190 191 5.419155 AGAGTAATTTCGGAGAGACACATCA 59.581 40.000 0.00 0.00 38.43 3.07
191 192 6.097554 AGAGTAATTTCGGAGAGACACATCAT 59.902 38.462 0.00 0.00 38.43 2.45
192 193 6.276847 AGTAATTTCGGAGAGACACATCATC 58.723 40.000 0.00 0.00 38.43 2.92
194 195 4.377839 TTTCGGAGAGACACATCATCTC 57.622 45.455 0.00 0.00 42.57 2.75
195 196 1.943340 TCGGAGAGACACATCATCTCG 59.057 52.381 0.00 0.00 46.09 4.04
196 197 1.001924 CGGAGAGACACATCATCTCGG 60.002 57.143 0.00 0.00 46.09 4.63
197 198 2.028130 GGAGAGACACATCATCTCGGT 58.972 52.381 0.00 0.00 46.09 4.69
200 201 1.402259 GAGACACATCATCTCGGTCGT 59.598 52.381 0.00 0.00 33.68 4.34
201 202 1.133216 AGACACATCATCTCGGTCGTG 59.867 52.381 0.00 0.00 33.84 4.35
202 203 0.458543 ACACATCATCTCGGTCGTGC 60.459 55.000 0.00 0.00 0.00 5.34
203 204 1.141881 ACATCATCTCGGTCGTGCC 59.858 57.895 0.00 0.00 0.00 5.01
204 205 1.323271 ACATCATCTCGGTCGTGCCT 61.323 55.000 0.00 0.00 34.25 4.75
206 207 1.323271 ATCATCTCGGTCGTGCCTGT 61.323 55.000 0.00 0.00 34.25 4.00
207 208 1.807165 CATCTCGGTCGTGCCTGTG 60.807 63.158 0.00 0.00 34.25 3.66
208 209 1.977009 ATCTCGGTCGTGCCTGTGA 60.977 57.895 0.00 0.00 34.25 3.58
213 214 4.295119 GTCGTGCCTGTGACCCGT 62.295 66.667 0.00 0.00 0.00 5.28
215 216 4.602259 CGTGCCTGTGACCCGTGT 62.602 66.667 0.00 0.00 0.00 4.49
216 217 2.665185 GTGCCTGTGACCCGTGTC 60.665 66.667 0.00 0.00 42.12 3.67
225 226 0.756294 TGACCCGTGTCACAATGTCT 59.244 50.000 0.00 0.00 46.40 3.41
227 228 0.756294 ACCCGTGTCACAATGTCTCA 59.244 50.000 3.42 0.00 0.00 3.27
228 229 1.148310 CCCGTGTCACAATGTCTCAC 58.852 55.000 3.42 7.19 0.00 3.51
229 230 1.148310 CCGTGTCACAATGTCTCACC 58.852 55.000 3.42 0.00 0.00 4.02
231 232 1.865865 GTGTCACAATGTCTCACCGT 58.134 50.000 0.00 0.00 0.00 4.83
232 233 2.606065 CGTGTCACAATGTCTCACCGTA 60.606 50.000 3.42 0.00 0.00 4.02
233 234 3.386486 GTGTCACAATGTCTCACCGTAA 58.614 45.455 0.00 0.00 0.00 3.18
235 236 2.412089 GTCACAATGTCTCACCGTAAGC 59.588 50.000 0.00 0.00 0.00 3.09
236 237 1.390123 CACAATGTCTCACCGTAAGCG 59.610 52.381 0.00 0.00 37.95 4.68
250 251 3.251571 CGTAAGCGGTCTTTTAGCTTCT 58.748 45.455 5.14 0.00 46.91 2.85
251 252 4.418392 CGTAAGCGGTCTTTTAGCTTCTA 58.582 43.478 5.14 0.00 46.91 2.10
254 255 4.473477 AGCGGTCTTTTAGCTTCTATGT 57.527 40.909 0.00 0.00 38.13 2.29
255 256 4.434520 AGCGGTCTTTTAGCTTCTATGTC 58.565 43.478 0.00 0.00 38.13 3.06
256 257 3.243177 GCGGTCTTTTAGCTTCTATGTCG 59.757 47.826 0.00 0.00 0.00 4.35
257 258 4.421948 CGGTCTTTTAGCTTCTATGTCGT 58.578 43.478 0.00 0.00 0.00 4.34
258 259 4.499758 CGGTCTTTTAGCTTCTATGTCGTC 59.500 45.833 0.00 0.00 0.00 4.20
261 262 2.486951 TTAGCTTCTATGTCGTCGGC 57.513 50.000 0.00 0.00 0.00 5.54
262 263 1.676746 TAGCTTCTATGTCGTCGGCT 58.323 50.000 0.00 0.00 0.00 5.52
264 265 2.231529 AGCTTCTATGTCGTCGGCTAT 58.768 47.619 0.00 0.00 0.00 2.97
267 268 0.596577 TCTATGTCGTCGGCTATGGC 59.403 55.000 0.00 0.00 37.82 4.40
272 273 3.536917 CGTCGGCTATGGCAGGGA 61.537 66.667 2.58 0.00 40.87 4.20
273 274 2.872388 CGTCGGCTATGGCAGGGAT 61.872 63.158 2.58 0.00 40.87 3.85
275 276 1.766059 TCGGCTATGGCAGGGATGT 60.766 57.895 2.58 0.00 40.87 3.06
276 277 1.149174 CGGCTATGGCAGGGATGTT 59.851 57.895 2.58 0.00 40.87 2.71
277 278 0.466189 CGGCTATGGCAGGGATGTTT 60.466 55.000 2.58 0.00 40.87 2.83
278 279 1.780503 GGCTATGGCAGGGATGTTTT 58.219 50.000 2.58 0.00 40.87 2.43
279 280 1.683385 GGCTATGGCAGGGATGTTTTC 59.317 52.381 2.58 0.00 40.87 2.29
280 281 2.378038 GCTATGGCAGGGATGTTTTCA 58.622 47.619 0.00 0.00 38.54 2.69
281 282 2.961062 GCTATGGCAGGGATGTTTTCAT 59.039 45.455 0.00 0.00 39.79 2.57
282 283 4.144297 GCTATGGCAGGGATGTTTTCATA 58.856 43.478 0.00 0.00 38.34 2.15
283 284 4.022849 GCTATGGCAGGGATGTTTTCATAC 60.023 45.833 0.00 0.00 38.34 2.39
286 287 1.676006 GCAGGGATGTTTTCATACGGG 59.324 52.381 0.00 0.00 41.84 5.28
287 288 2.682563 GCAGGGATGTTTTCATACGGGA 60.683 50.000 0.00 0.00 41.84 5.14
289 290 2.844348 AGGGATGTTTTCATACGGGACT 59.156 45.455 0.00 0.00 41.84 3.85
290 291 4.035112 AGGGATGTTTTCATACGGGACTA 58.965 43.478 0.00 0.00 41.84 2.59
291 292 4.658901 AGGGATGTTTTCATACGGGACTAT 59.341 41.667 0.00 0.00 41.84 2.12
292 293 4.995487 GGGATGTTTTCATACGGGACTATC 59.005 45.833 0.00 0.00 41.84 2.08
293 294 4.995487 GGATGTTTTCATACGGGACTATCC 59.005 45.833 0.00 0.00 41.05 2.59
294 295 5.221661 GGATGTTTTCATACGGGACTATCCT 60.222 44.000 0.00 0.00 41.05 3.24
295 296 5.687166 TGTTTTCATACGGGACTATCCTT 57.313 39.130 0.00 0.00 36.57 3.36
296 297 5.667466 TGTTTTCATACGGGACTATCCTTC 58.333 41.667 0.00 0.00 36.57 3.46
297 298 4.579454 TTTCATACGGGACTATCCTTCG 57.421 45.455 0.00 0.00 36.57 3.79
298 299 3.497103 TCATACGGGACTATCCTTCGA 57.503 47.619 1.27 0.00 36.57 3.71
301 302 2.140839 ACGGGACTATCCTTCGAAGT 57.859 50.000 23.03 8.87 36.57 3.01
302 303 2.454538 ACGGGACTATCCTTCGAAGTT 58.545 47.619 23.03 12.87 36.57 2.66
304 305 2.688958 CGGGACTATCCTTCGAAGTTCT 59.311 50.000 23.03 10.00 36.57 3.01
309 310 2.393271 ATCCTTCGAAGTTCTGCTGG 57.607 50.000 23.03 6.93 0.00 4.85
312 313 1.301677 CTTCGAAGTTCTGCTGGGGC 61.302 60.000 17.24 0.00 39.26 5.80
314 315 2.759795 GAAGTTCTGCTGGGGCCT 59.240 61.111 0.84 0.00 37.74 5.19
315 316 1.075659 GAAGTTCTGCTGGGGCCTT 59.924 57.895 0.84 0.00 37.74 4.35
316 317 0.540597 GAAGTTCTGCTGGGGCCTTT 60.541 55.000 0.84 0.00 37.74 3.11
317 318 0.829182 AAGTTCTGCTGGGGCCTTTG 60.829 55.000 0.84 0.00 37.74 2.77
328 329 2.429069 GCCTTTGCCGTTGCTTCG 60.429 61.111 0.00 0.00 38.71 3.79
329 330 2.903547 GCCTTTGCCGTTGCTTCGA 61.904 57.895 2.99 0.00 38.71 3.71
330 331 1.652012 CCTTTGCCGTTGCTTCGAA 59.348 52.632 0.00 0.00 38.71 3.71
331 332 0.240945 CCTTTGCCGTTGCTTCGAAT 59.759 50.000 0.00 0.00 38.71 3.34
332 333 1.330306 CTTTGCCGTTGCTTCGAATG 58.670 50.000 0.00 0.00 38.71 2.67
333 334 0.039617 TTTGCCGTTGCTTCGAATGG 60.040 50.000 0.00 0.00 38.71 3.16
334 335 1.169661 TTGCCGTTGCTTCGAATGGT 61.170 50.000 0.00 0.00 38.71 3.55
336 337 0.729140 GCCGTTGCTTCGAATGGTTG 60.729 55.000 0.00 0.00 34.83 3.77
337 338 0.109781 CCGTTGCTTCGAATGGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
338 339 0.109781 CGTTGCTTCGAATGGTTGGG 60.110 55.000 0.00 0.00 0.00 4.12
339 340 0.243636 GTTGCTTCGAATGGTTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
340 341 0.111446 TTGCTTCGAATGGTTGGGGA 59.889 50.000 0.00 0.00 0.00 4.81
342 343 0.526211 GCTTCGAATGGTTGGGGAAC 59.474 55.000 0.00 0.00 0.00 3.62
343 344 1.886655 GCTTCGAATGGTTGGGGAACT 60.887 52.381 0.00 0.00 0.00 3.01
344 345 2.617021 GCTTCGAATGGTTGGGGAACTA 60.617 50.000 0.00 0.00 0.00 2.24
345 346 3.270877 CTTCGAATGGTTGGGGAACTAG 58.729 50.000 0.00 0.00 0.00 2.57
346 347 2.262637 TCGAATGGTTGGGGAACTAGT 58.737 47.619 0.00 0.00 0.00 2.57
348 349 3.007635 CGAATGGTTGGGGAACTAGTTC 58.992 50.000 24.73 24.73 38.80 3.01
349 350 3.558321 CGAATGGTTGGGGAACTAGTTCA 60.558 47.826 31.30 13.67 41.20 3.18
350 351 4.600062 GAATGGTTGGGGAACTAGTTCAT 58.400 43.478 31.30 15.73 41.20 2.57
351 352 3.433306 TGGTTGGGGAACTAGTTCATG 57.567 47.619 31.30 0.00 41.20 3.07
352 353 2.714250 TGGTTGGGGAACTAGTTCATGT 59.286 45.455 31.30 0.37 41.20 3.21
353 354 3.081804 GGTTGGGGAACTAGTTCATGTG 58.918 50.000 31.30 0.00 41.20 3.21
354 355 3.497942 GGTTGGGGAACTAGTTCATGTGT 60.498 47.826 31.30 0.00 41.20 3.72
356 357 2.708861 TGGGGAACTAGTTCATGTGTGT 59.291 45.455 31.30 0.00 41.20 3.72
357 358 3.074412 GGGGAACTAGTTCATGTGTGTG 58.926 50.000 31.30 0.00 41.20 3.82
358 359 2.484264 GGGAACTAGTTCATGTGTGTGC 59.516 50.000 31.30 14.12 41.20 4.57
360 361 2.928801 ACTAGTTCATGTGTGTGCCA 57.071 45.000 0.00 0.00 0.00 4.92
362 363 1.806542 CTAGTTCATGTGTGTGCCACC 59.193 52.381 0.00 0.00 43.85 4.61
363 364 0.183492 AGTTCATGTGTGTGCCACCT 59.817 50.000 0.00 0.00 43.85 4.00
365 366 1.408702 GTTCATGTGTGTGCCACCTTT 59.591 47.619 0.00 0.00 43.85 3.11
366 367 1.774110 TCATGTGTGTGCCACCTTTT 58.226 45.000 0.00 0.00 43.85 2.27
367 368 1.408340 TCATGTGTGTGCCACCTTTTG 59.592 47.619 0.00 0.00 43.85 2.44
381 382 2.315176 CCTTTTGGTGTCCAATGTCCA 58.685 47.619 1.97 0.00 43.55 4.02
382 383 2.899256 CCTTTTGGTGTCCAATGTCCAT 59.101 45.455 1.97 0.00 43.55 3.41
383 384 4.085733 CCTTTTGGTGTCCAATGTCCATA 58.914 43.478 1.97 0.00 43.55 2.74
384 385 4.082245 CCTTTTGGTGTCCAATGTCCATAC 60.082 45.833 1.97 0.00 43.55 2.39
385 386 4.380843 TTTGGTGTCCAATGTCCATACT 57.619 40.909 1.97 0.00 43.55 2.12
386 387 5.506730 TTTGGTGTCCAATGTCCATACTA 57.493 39.130 1.97 0.00 43.55 1.82
387 388 5.708736 TTGGTGTCCAATGTCCATACTAT 57.291 39.130 0.00 0.00 38.75 2.12
389 390 4.719273 TGGTGTCCAATGTCCATACTATCA 59.281 41.667 0.00 0.00 0.00 2.15
390 391 5.190726 TGGTGTCCAATGTCCATACTATCAA 59.809 40.000 0.00 0.00 0.00 2.57
391 392 6.119536 GGTGTCCAATGTCCATACTATCAAA 58.880 40.000 0.00 0.00 0.00 2.69
392 393 6.601613 GGTGTCCAATGTCCATACTATCAAAA 59.398 38.462 0.00 0.00 0.00 2.44
394 395 7.336931 GTGTCCAATGTCCATACTATCAAAACT 59.663 37.037 0.00 0.00 0.00 2.66
396 397 8.184192 GTCCAATGTCCATACTATCAAAACTTG 58.816 37.037 0.00 0.00 0.00 3.16
397 398 7.888021 TCCAATGTCCATACTATCAAAACTTGT 59.112 33.333 0.00 0.00 0.00 3.16
401 402 9.959721 ATGTCCATACTATCAAAACTTGTAACT 57.040 29.630 0.00 0.00 0.00 2.24
402 403 9.214957 TGTCCATACTATCAAAACTTGTAACTG 57.785 33.333 0.00 0.00 0.00 3.16
404 405 7.064134 TCCATACTATCAAAACTTGTAACTGCG 59.936 37.037 0.00 0.00 0.00 5.18
406 407 5.302360 ACTATCAAAACTTGTAACTGCGGA 58.698 37.500 0.00 0.00 0.00 5.54
408 409 3.799366 TCAAAACTTGTAACTGCGGAGA 58.201 40.909 12.26 0.00 0.00 3.71
409 410 3.807622 TCAAAACTTGTAACTGCGGAGAG 59.192 43.478 12.26 0.00 0.00 3.20
411 412 0.037232 ACTTGTAACTGCGGAGAGGC 60.037 55.000 12.26 0.00 0.00 4.70
412 413 0.037326 CTTGTAACTGCGGAGAGGCA 60.037 55.000 12.26 2.86 41.45 4.75
418 419 2.917227 TGCGGAGAGGCAGTGTGA 60.917 61.111 0.00 0.00 38.17 3.58
419 420 2.285773 TGCGGAGAGGCAGTGTGAT 61.286 57.895 0.00 0.00 38.17 3.06
420 421 1.078848 GCGGAGAGGCAGTGTGATT 60.079 57.895 0.00 0.00 0.00 2.57
421 422 1.086634 GCGGAGAGGCAGTGTGATTC 61.087 60.000 0.00 0.00 0.00 2.52
422 423 0.460987 CGGAGAGGCAGTGTGATTCC 60.461 60.000 0.00 0.00 0.00 3.01
423 424 0.908198 GGAGAGGCAGTGTGATTCCT 59.092 55.000 0.00 0.00 0.00 3.36
424 425 1.406614 GGAGAGGCAGTGTGATTCCTG 60.407 57.143 0.00 0.00 0.00 3.86
425 426 0.617413 AGAGGCAGTGTGATTCCTGG 59.383 55.000 0.00 0.00 0.00 4.45
426 427 0.326264 GAGGCAGTGTGATTCCTGGT 59.674 55.000 0.00 0.00 0.00 4.00
429 430 0.877071 GCAGTGTGATTCCTGGTGTG 59.123 55.000 0.00 0.00 0.00 3.82
430 431 1.815408 GCAGTGTGATTCCTGGTGTGT 60.815 52.381 0.00 0.00 0.00 3.72
432 433 3.738982 CAGTGTGATTCCTGGTGTGTAA 58.261 45.455 0.00 0.00 0.00 2.41
433 434 3.498397 CAGTGTGATTCCTGGTGTGTAAC 59.502 47.826 0.00 0.00 37.35 2.50
450 451 5.137403 GTGTAACAGTAAAGATGTGCAACG 58.863 41.667 0.00 0.00 36.51 4.10
452 453 4.893424 AACAGTAAAGATGTGCAACGTT 57.107 36.364 0.00 0.00 42.39 3.99
453 454 5.994887 AACAGTAAAGATGTGCAACGTTA 57.005 34.783 0.00 0.00 42.39 3.18
454 455 6.554334 AACAGTAAAGATGTGCAACGTTAT 57.446 33.333 0.00 0.00 42.39 1.89
456 457 5.932303 ACAGTAAAGATGTGCAACGTTATCT 59.068 36.000 0.00 2.65 42.39 1.98
457 458 6.128553 ACAGTAAAGATGTGCAACGTTATCTG 60.129 38.462 11.12 3.66 42.39 2.90
458 459 5.932303 AGTAAAGATGTGCAACGTTATCTGT 59.068 36.000 11.12 8.83 42.39 3.41
459 460 7.062956 CAGTAAAGATGTGCAACGTTATCTGTA 59.937 37.037 11.12 7.97 42.39 2.74
460 461 6.408858 AAAGATGTGCAACGTTATCTGTAG 57.591 37.500 11.12 0.00 42.39 2.74
462 463 5.103000 AGATGTGCAACGTTATCTGTAGAC 58.897 41.667 9.88 0.00 42.39 2.59
464 465 4.234574 TGTGCAACGTTATCTGTAGACTG 58.765 43.478 0.00 0.00 42.39 3.51
465 466 4.235360 GTGCAACGTTATCTGTAGACTGT 58.765 43.478 0.00 0.00 0.00 3.55
466 467 5.048573 TGTGCAACGTTATCTGTAGACTGTA 60.049 40.000 0.00 0.00 42.39 2.74
467 468 5.512082 GTGCAACGTTATCTGTAGACTGTAG 59.488 44.000 0.00 0.00 0.00 2.74
468 469 5.182570 TGCAACGTTATCTGTAGACTGTAGT 59.817 40.000 0.00 0.00 0.00 2.73
471 472 6.814506 ACGTTATCTGTAGACTGTAGTGTT 57.185 37.500 0.00 0.00 0.00 3.32
472 473 7.912056 ACGTTATCTGTAGACTGTAGTGTTA 57.088 36.000 0.00 0.00 0.00 2.41
473 474 7.746929 ACGTTATCTGTAGACTGTAGTGTTAC 58.253 38.462 0.00 0.00 0.00 2.50
474 475 7.388776 ACGTTATCTGTAGACTGTAGTGTTACA 59.611 37.037 0.00 0.00 37.45 2.41
486 487 6.401047 TGTAGTGTTACAGTACAGAAGCTT 57.599 37.500 24.14 0.00 42.89 3.74
487 488 6.444633 TGTAGTGTTACAGTACAGAAGCTTC 58.555 40.000 24.14 19.11 42.89 3.86
488 489 5.793030 AGTGTTACAGTACAGAAGCTTCT 57.207 39.130 23.49 23.49 38.25 2.85
489 490 7.734686 TGTAGTGTTACAGTACAGAAGCTTCTG 60.735 40.741 41.59 41.59 42.89 3.02
502 503 6.064846 AGAAGCTTCTGTGTGTACATTTTG 57.935 37.500 27.96 0.00 35.89 2.44
503 504 4.836125 AGCTTCTGTGTGTACATTTTGG 57.164 40.909 0.00 0.00 35.97 3.28
504 505 3.569701 AGCTTCTGTGTGTACATTTTGGG 59.430 43.478 0.00 0.00 35.97 4.12
505 506 3.857010 GCTTCTGTGTGTACATTTTGGGC 60.857 47.826 0.00 0.00 35.97 5.36
507 508 3.561143 TCTGTGTGTACATTTTGGGCTT 58.439 40.909 0.00 0.00 35.97 4.35
508 509 3.317711 TCTGTGTGTACATTTTGGGCTTG 59.682 43.478 0.00 0.00 35.97 4.01
510 511 3.181482 TGTGTGTACATTTTGGGCTTGTG 60.181 43.478 0.00 0.00 0.00 3.33
512 513 2.625790 GTGTACATTTTGGGCTTGTGGA 59.374 45.455 0.00 0.00 0.00 4.02
513 514 3.258123 GTGTACATTTTGGGCTTGTGGAT 59.742 43.478 0.00 0.00 0.00 3.41
514 515 3.509575 TGTACATTTTGGGCTTGTGGATC 59.490 43.478 0.00 0.00 0.00 3.36
515 516 2.607499 ACATTTTGGGCTTGTGGATCA 58.393 42.857 0.00 0.00 0.00 2.92
517 518 3.055675 ACATTTTGGGCTTGTGGATCATG 60.056 43.478 0.00 0.00 0.00 3.07
518 519 2.307496 TTTGGGCTTGTGGATCATGT 57.693 45.000 0.00 0.00 0.00 3.21
519 520 3.448093 TTTGGGCTTGTGGATCATGTA 57.552 42.857 0.00 0.00 0.00 2.29
520 521 2.418368 TGGGCTTGTGGATCATGTAC 57.582 50.000 0.00 0.00 0.00 2.90
522 523 2.292267 GGGCTTGTGGATCATGTACAG 58.708 52.381 0.33 0.00 0.00 2.74
524 525 1.328680 GCTTGTGGATCATGTACAGCG 59.671 52.381 0.33 0.00 0.00 5.18
525 526 1.935873 CTTGTGGATCATGTACAGCGG 59.064 52.381 0.33 0.00 0.00 5.52
526 527 0.901827 TGTGGATCATGTACAGCGGT 59.098 50.000 0.33 0.00 0.00 5.68
527 528 2.104170 TGTGGATCATGTACAGCGGTA 58.896 47.619 0.33 0.00 0.00 4.02
548 549 5.163893 GGTACTGTACCGATTGTTTGATGTG 60.164 44.000 20.34 0.00 39.39 3.21
550 551 5.543714 ACTGTACCGATTGTTTGATGTGTA 58.456 37.500 0.00 0.00 0.00 2.90
552 553 5.785243 TGTACCGATTGTTTGATGTGTAGA 58.215 37.500 0.00 0.00 0.00 2.59
553 554 6.224584 TGTACCGATTGTTTGATGTGTAGAA 58.775 36.000 0.00 0.00 0.00 2.10
555 556 6.627395 ACCGATTGTTTGATGTGTAGAAAA 57.373 33.333 0.00 0.00 0.00 2.29
557 558 8.330466 ACCGATTGTTTGATGTGTAGAAAATA 57.670 30.769 0.00 0.00 0.00 1.40
558 559 8.788806 ACCGATTGTTTGATGTGTAGAAAATAA 58.211 29.630 0.00 0.00 0.00 1.40
617 618 6.567602 TGAGATATCCGATATCCTCTCTGA 57.432 41.667 20.38 0.00 42.03 3.27
619 620 6.997476 TGAGATATCCGATATCCTCTCTGATG 59.003 42.308 20.38 0.00 42.03 3.07
620 621 6.910191 AGATATCCGATATCCTCTCTGATGT 58.090 40.000 20.38 0.68 42.03 3.06
621 622 6.998074 AGATATCCGATATCCTCTCTGATGTC 59.002 42.308 20.38 0.00 42.03 3.06
622 623 3.691575 TCCGATATCCTCTCTGATGTCC 58.308 50.000 0.00 0.00 31.34 4.02
623 624 2.421775 CCGATATCCTCTCTGATGTCCG 59.578 54.545 0.00 0.00 31.34 4.79
624 625 3.339141 CGATATCCTCTCTGATGTCCGA 58.661 50.000 0.00 0.00 31.34 4.55
625 626 3.944650 CGATATCCTCTCTGATGTCCGAT 59.055 47.826 0.00 0.00 31.34 4.18
627 628 5.762711 CGATATCCTCTCTGATGTCCGATAT 59.237 44.000 0.00 0.00 31.34 1.63
628 629 6.073276 CGATATCCTCTCTGATGTCCGATATC 60.073 46.154 0.00 0.00 35.97 1.63
630 631 4.729868 TCCTCTCTGATGTCCGATATCAA 58.270 43.478 8.92 1.20 34.41 2.57
631 632 4.520874 TCCTCTCTGATGTCCGATATCAAC 59.479 45.833 8.92 1.04 34.41 3.18
632 633 4.522405 CCTCTCTGATGTCCGATATCAACT 59.478 45.833 8.92 0.00 34.41 3.16
633 634 5.444663 TCTCTGATGTCCGATATCAACTG 57.555 43.478 8.92 3.36 34.41 3.16
636 637 2.224281 TGATGTCCGATATCAACTGCCC 60.224 50.000 5.41 0.00 31.98 5.36
638 639 1.768275 TGTCCGATATCAACTGCCCAT 59.232 47.619 3.12 0.00 0.00 4.00
640 641 3.389656 TGTCCGATATCAACTGCCCATAA 59.610 43.478 3.12 0.00 0.00 1.90
641 642 4.041567 TGTCCGATATCAACTGCCCATAAT 59.958 41.667 3.12 0.00 0.00 1.28
642 643 5.003804 GTCCGATATCAACTGCCCATAATT 58.996 41.667 3.12 0.00 0.00 1.40
643 644 5.003160 TCCGATATCAACTGCCCATAATTG 58.997 41.667 3.12 0.00 0.00 2.32
646 647 5.241506 CGATATCAACTGCCCATAATTGGTT 59.758 40.000 3.12 0.00 41.91 3.67
647 648 4.741321 ATCAACTGCCCATAATTGGTTG 57.259 40.909 0.00 0.00 41.91 3.77
648 649 2.233431 TCAACTGCCCATAATTGGTTGC 59.767 45.455 0.00 0.00 41.91 4.17
649 650 1.194218 ACTGCCCATAATTGGTTGCC 58.806 50.000 0.00 0.00 41.91 4.52
654 655 2.465813 CCCATAATTGGTTGCCCTGAA 58.534 47.619 0.00 0.00 41.91 3.02
655 656 2.168313 CCCATAATTGGTTGCCCTGAAC 59.832 50.000 0.00 0.00 41.91 3.18
656 657 3.099141 CCATAATTGGTTGCCCTGAACT 58.901 45.455 0.00 0.00 38.30 3.01
658 659 4.709397 CCATAATTGGTTGCCCTGAACTAA 59.291 41.667 0.00 0.00 38.30 2.24
660 661 6.127083 CCATAATTGGTTGCCCTGAACTAAAT 60.127 38.462 0.00 0.00 38.30 1.40
661 662 4.806640 ATTGGTTGCCCTGAACTAAATG 57.193 40.909 0.00 0.00 31.08 2.32
662 663 3.237268 TGGTTGCCCTGAACTAAATGT 57.763 42.857 0.00 0.00 0.00 2.71
663 664 2.890311 TGGTTGCCCTGAACTAAATGTG 59.110 45.455 0.00 0.00 0.00 3.21
664 665 2.352715 GGTTGCCCTGAACTAAATGTGC 60.353 50.000 0.00 0.00 0.00 4.57
665 666 2.558359 GTTGCCCTGAACTAAATGTGCT 59.442 45.455 0.00 0.00 0.00 4.40
666 667 2.161855 TGCCCTGAACTAAATGTGCTG 58.838 47.619 0.00 0.00 0.00 4.41
667 668 2.162681 GCCCTGAACTAAATGTGCTGT 58.837 47.619 0.00 0.00 0.00 4.40
668 669 2.558359 GCCCTGAACTAAATGTGCTGTT 59.442 45.455 0.00 0.00 0.00 3.16
669 670 3.005791 GCCCTGAACTAAATGTGCTGTTT 59.994 43.478 0.00 0.00 0.00 2.83
671 672 4.520492 CCCTGAACTAAATGTGCTGTTTCT 59.480 41.667 0.00 0.00 0.00 2.52
672 673 5.335191 CCCTGAACTAAATGTGCTGTTTCTC 60.335 44.000 0.00 0.00 0.00 2.87
674 675 6.238731 CCTGAACTAAATGTGCTGTTTCTCAA 60.239 38.462 0.00 0.00 0.00 3.02
676 677 7.542890 TGAACTAAATGTGCTGTTTCTCAAAA 58.457 30.769 0.00 0.00 0.00 2.44
677 678 8.196771 TGAACTAAATGTGCTGTTTCTCAAAAT 58.803 29.630 0.00 0.00 0.00 1.82
678 679 9.677567 GAACTAAATGTGCTGTTTCTCAAAATA 57.322 29.630 0.00 0.00 0.00 1.40
686 687 9.677567 TGTGCTGTTTCTCAAAATAAATAAGTC 57.322 29.630 0.00 0.00 0.00 3.01
707 708 3.523564 TCTTCTTCAATCCCCCGAGAAAT 59.476 43.478 0.00 0.00 0.00 2.17
709 710 2.172717 TCTTCAATCCCCCGAGAAATCC 59.827 50.000 0.00 0.00 0.00 3.01
724 725 5.193099 AGAAATCCCCTAGCTTGCTTTTA 57.807 39.130 0.00 0.00 0.00 1.52
725 726 5.770919 AGAAATCCCCTAGCTTGCTTTTAT 58.229 37.500 0.00 0.00 0.00 1.40
726 727 6.197903 AGAAATCCCCTAGCTTGCTTTTATT 58.802 36.000 0.00 0.00 0.00 1.40
727 728 6.669591 AGAAATCCCCTAGCTTGCTTTTATTT 59.330 34.615 0.00 1.54 0.00 1.40
769 770 2.432206 TCACATGTGTCACGTGGTAG 57.568 50.000 25.31 16.00 39.36 3.18
786 787 2.914289 GCCCCTAGCACTGCTCAT 59.086 61.111 6.86 0.00 42.97 2.90
787 788 1.525535 GCCCCTAGCACTGCTCATG 60.526 63.158 6.86 0.00 42.97 3.07
788 789 1.910722 CCCCTAGCACTGCTCATGT 59.089 57.895 6.86 0.00 40.44 3.21
789 790 1.123077 CCCCTAGCACTGCTCATGTA 58.877 55.000 6.86 0.00 40.44 2.29
792 793 2.103771 CCCTAGCACTGCTCATGTATGT 59.896 50.000 6.86 0.00 40.44 2.29
793 794 3.388308 CCTAGCACTGCTCATGTATGTC 58.612 50.000 6.86 0.00 40.44 3.06
794 795 1.931906 AGCACTGCTCATGTATGTCG 58.068 50.000 0.00 0.00 30.62 4.35
795 796 0.302890 GCACTGCTCATGTATGTCGC 59.697 55.000 0.00 0.00 0.00 5.19
796 797 0.573987 CACTGCTCATGTATGTCGCG 59.426 55.000 0.00 0.00 0.00 5.87
825 826 5.361427 AGCTTCATCAGTTCATCATCTCTG 58.639 41.667 0.00 0.00 0.00 3.35
827 828 5.234757 GCTTCATCAGTTCATCATCTCTGTC 59.765 44.000 0.00 0.00 0.00 3.51
828 829 4.929781 TCATCAGTTCATCATCTCTGTCG 58.070 43.478 0.00 0.00 0.00 4.35
841 846 4.707840 TGTCGTCGTCGTCGTCGC 62.708 66.667 15.28 11.38 44.86 5.19
883 888 1.261238 ACAGGGAAGAAGAGGAGGCG 61.261 60.000 0.00 0.00 0.00 5.52
910 915 1.213182 GGAAGGAGGGAGGATTTGACC 59.787 57.143 0.00 0.00 0.00 4.02
957 962 2.897350 CCATTTCCTCCCGCTCGC 60.897 66.667 0.00 0.00 0.00 5.03
1114 1124 0.036164 CCATCGAACCAACTGACCCA 59.964 55.000 0.00 0.00 0.00 4.51
1115 1125 1.340017 CCATCGAACCAACTGACCCAT 60.340 52.381 0.00 0.00 0.00 4.00
1123 1133 3.181329 ACCAACTGACCCATACATCTGA 58.819 45.455 0.00 0.00 0.00 3.27
1125 1135 3.535561 CAACTGACCCATACATCTGACC 58.464 50.000 0.00 0.00 0.00 4.02
1198 1208 3.121030 GCACCAGCAGCAGTACCG 61.121 66.667 0.00 0.00 41.58 4.02
1360 1397 4.402528 CCCGCCGTCCATCCACAA 62.403 66.667 0.00 0.00 0.00 3.33
1375 1412 3.691342 CAACGCCGTCCTCTCCCA 61.691 66.667 0.00 0.00 0.00 4.37
1461 1503 0.525761 CACTGTACCATTTTGCCCCG 59.474 55.000 0.00 0.00 0.00 5.73
1487 1529 4.928661 AATTGTCACAGCGTTCATCTAC 57.071 40.909 0.00 0.00 0.00 2.59
1598 1667 6.587608 GCTCCTTGTCAAAATTGTCTAAATGG 59.412 38.462 0.00 0.00 0.00 3.16
1629 1698 1.457303 GAGTGATAATTAGCGCGCAGG 59.543 52.381 35.10 0.00 0.00 4.85
1654 1723 0.254462 TCCCGCAGCCATGAATGTTA 59.746 50.000 0.00 0.00 0.00 2.41
1821 1890 3.119602 TCAAGGACTGCTGTGACGTATAC 60.120 47.826 0.00 0.00 0.00 1.47
2011 2080 6.729428 AGGTTCAAGATTCCTCATTCAGAAT 58.271 36.000 0.00 0.00 35.43 2.40
2383 2472 6.072673 GGCCCTATATCACGATTTTACCTTTG 60.073 42.308 0.00 0.00 0.00 2.77
2609 2731 9.609346 AGTTAAGTACCGTGCAAATTATCTAAT 57.391 29.630 0.00 0.00 0.00 1.73
2785 2931 6.978343 TTTTTAGCATGTACGATAAGTGCT 57.022 33.333 3.55 3.55 46.75 4.40
2847 2993 6.720309 TCATGATGGGAAGTTCACAATCTTA 58.280 36.000 12.77 0.00 31.08 2.10
3319 3775 1.145803 GCACGTTTAGTCAGTGGTCC 58.854 55.000 0.00 0.00 36.48 4.46
3451 3918 2.511600 GATTGCGAGGGTCGTGGG 60.512 66.667 0.00 0.00 42.81 4.61
3634 4101 9.513906 TTCAATATGTAATTCACCTCAACTCAA 57.486 29.630 0.00 0.00 0.00 3.02
3961 4512 4.221703 AGACAAGTGACCACAGAATAGAGG 59.778 45.833 2.78 0.00 0.00 3.69
4176 4894 7.386848 GTCCTATTCTACTGCAAACTGTTGTAA 59.613 37.037 0.00 0.00 37.06 2.41
4639 5512 0.817634 TGTTTGAGTGCCCCGTTCTG 60.818 55.000 0.00 0.00 0.00 3.02
5340 6233 0.804255 TCTTTTAGGGGGAGAGGGGT 59.196 55.000 0.00 0.00 0.00 4.95
5493 6389 8.969121 TTTTCTAGAACATGTTTGCATATGTG 57.031 30.769 13.36 0.00 37.57 3.21
5528 6424 7.679144 TCGAAATTCTCTTCTCATTTTGATCG 58.321 34.615 0.00 0.00 29.10 3.69
5530 6426 5.747951 ATTCTCTTCTCATTTTGATCGGC 57.252 39.130 0.00 0.00 0.00 5.54
5532 6428 2.932614 CTCTTCTCATTTTGATCGGCGT 59.067 45.455 6.85 0.00 0.00 5.68
5539 6435 1.710013 TTTTGATCGGCGTGTCTCTC 58.290 50.000 6.85 0.00 0.00 3.20
5542 6438 1.968704 TGATCGGCGTGTCTCTCTAT 58.031 50.000 6.85 0.00 0.00 1.98
5622 6603 2.237143 TGGTGAGCTTGAGTATGAAGGG 59.763 50.000 0.00 0.00 26.62 3.95
5636 6620 1.358787 TGAAGGGCATTTCCAGGACAT 59.641 47.619 0.00 0.00 36.21 3.06
5677 6661 4.179298 GGAAGAGAAATGCAAATTCCAGC 58.821 43.478 10.91 3.42 36.91 4.85
5707 6691 1.066430 TCATAACGGGTTGACCTCTGC 60.066 52.381 0.00 0.00 36.97 4.26
5754 6742 3.733684 CGGAAAACAGTTTGTGACTTGGG 60.734 47.826 0.00 0.00 36.10 4.12
5838 6827 1.063006 CAATTGTGCTCATCGCGGG 59.937 57.895 6.13 0.00 43.27 6.13
5866 6855 1.399727 CCAAGAATCGTCCGTTGCAAC 60.400 52.381 19.89 19.89 0.00 4.17
5868 6857 1.588674 AGAATCGTCCGTTGCAACAA 58.411 45.000 28.01 13.51 0.00 2.83
5871 6860 1.018148 ATCGTCCGTTGCAACAAACA 58.982 45.000 28.01 15.15 0.00 2.83
5872 6861 0.097325 TCGTCCGTTGCAACAAACAC 59.903 50.000 28.01 16.40 0.00 3.32
6042 7071 4.458295 CGAGAGTAAGTACCTGTTCCTGAA 59.542 45.833 0.00 0.00 0.00 3.02
6051 7080 4.408182 ACCTGTTCCTGAATTATCTCCG 57.592 45.455 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.394836 GGGACCGAAGCAGCTCCT 61.395 66.667 0.00 0.00 0.00 3.69
2 3 2.125350 CAGGGACCGAAGCAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
3 4 2.604686 TCAGGGACCGAAGCAGCT 60.605 61.111 0.00 0.00 0.00 4.24
6 7 2.154798 CTTCGTCAGGGACCGAAGCA 62.155 60.000 8.60 0.00 36.89 3.91
7 8 1.446272 CTTCGTCAGGGACCGAAGC 60.446 63.158 8.60 0.00 36.89 3.86
8 9 0.317479 AACTTCGTCAGGGACCGAAG 59.683 55.000 17.31 17.31 42.58 3.79
10 11 0.754472 AAAACTTCGTCAGGGACCGA 59.246 50.000 0.00 0.00 0.00 4.69
13 14 1.871676 GTGGAAAACTTCGTCAGGGAC 59.128 52.381 0.00 0.00 0.00 4.46
14 15 1.487142 TGTGGAAAACTTCGTCAGGGA 59.513 47.619 0.00 0.00 0.00 4.20
15 16 1.873591 CTGTGGAAAACTTCGTCAGGG 59.126 52.381 0.00 0.00 31.91 4.45
16 17 2.802816 CTCTGTGGAAAACTTCGTCAGG 59.197 50.000 0.00 0.00 34.33 3.86
17 18 2.221981 GCTCTGTGGAAAACTTCGTCAG 59.778 50.000 0.00 0.00 34.62 3.51
18 19 2.210116 GCTCTGTGGAAAACTTCGTCA 58.790 47.619 0.00 0.00 0.00 4.35
19 20 1.192534 CGCTCTGTGGAAAACTTCGTC 59.807 52.381 0.00 0.00 0.00 4.20
21 22 0.110644 GCGCTCTGTGGAAAACTTCG 60.111 55.000 0.00 0.00 0.00 3.79
22 23 0.944386 TGCGCTCTGTGGAAAACTTC 59.056 50.000 9.73 0.00 0.00 3.01
23 24 1.334869 CTTGCGCTCTGTGGAAAACTT 59.665 47.619 9.73 0.00 0.00 2.66
24 25 0.947244 CTTGCGCTCTGTGGAAAACT 59.053 50.000 9.73 0.00 0.00 2.66
26 27 1.172180 CCCTTGCGCTCTGTGGAAAA 61.172 55.000 9.73 0.00 0.00 2.29
28 29 2.032528 CCCTTGCGCTCTGTGGAA 59.967 61.111 9.73 0.00 0.00 3.53
29 30 4.020617 CCCCTTGCGCTCTGTGGA 62.021 66.667 9.73 0.00 0.00 4.02
49 50 4.906065 ATGCCTGTATGTTGCATAGTTG 57.094 40.909 0.00 0.00 43.51 3.16
50 51 4.821805 GGTATGCCTGTATGTTGCATAGTT 59.178 41.667 3.84 0.00 45.64 2.24
51 52 4.141505 TGGTATGCCTGTATGTTGCATAGT 60.142 41.667 0.16 0.00 45.64 2.12
52 53 4.388485 TGGTATGCCTGTATGTTGCATAG 58.612 43.478 0.16 0.00 45.64 2.23
53 54 4.429854 TGGTATGCCTGTATGTTGCATA 57.570 40.909 0.16 0.00 43.51 3.14
54 55 3.295585 TGGTATGCCTGTATGTTGCAT 57.704 42.857 0.16 0.00 46.68 3.96
55 56 2.797177 TGGTATGCCTGTATGTTGCA 57.203 45.000 0.16 0.00 39.68 4.08
56 57 3.968649 CATTGGTATGCCTGTATGTTGC 58.031 45.455 0.16 0.00 35.27 4.17
68 69 2.048444 AGCTGGAGTGCATTGGTATG 57.952 50.000 0.00 0.00 34.99 2.39
69 70 2.814805 AAGCTGGAGTGCATTGGTAT 57.185 45.000 0.00 0.00 34.99 2.73
70 71 2.040278 AGAAAGCTGGAGTGCATTGGTA 59.960 45.455 0.00 0.00 34.99 3.25
72 73 1.542492 AGAAAGCTGGAGTGCATTGG 58.458 50.000 0.00 0.00 34.99 3.16
73 74 3.314553 CAAAGAAAGCTGGAGTGCATTG 58.685 45.455 0.00 0.00 34.99 2.82
75 76 1.271656 GCAAAGAAAGCTGGAGTGCAT 59.728 47.619 0.00 0.00 34.99 3.96
76 77 0.670162 GCAAAGAAAGCTGGAGTGCA 59.330 50.000 0.00 0.00 34.99 4.57
77 78 0.038801 GGCAAAGAAAGCTGGAGTGC 60.039 55.000 0.00 0.00 0.00 4.40
78 79 0.239347 CGGCAAAGAAAGCTGGAGTG 59.761 55.000 0.00 0.00 34.75 3.51
79 80 0.108585 TCGGCAAAGAAAGCTGGAGT 59.891 50.000 0.00 0.00 38.87 3.85
80 81 1.457346 ATCGGCAAAGAAAGCTGGAG 58.543 50.000 0.00 0.00 38.87 3.86
81 82 1.812571 GAATCGGCAAAGAAAGCTGGA 59.187 47.619 0.00 0.00 38.87 3.86
82 83 1.541147 TGAATCGGCAAAGAAAGCTGG 59.459 47.619 0.00 0.00 38.87 4.85
84 85 3.378427 GGTATGAATCGGCAAAGAAAGCT 59.622 43.478 0.00 0.00 0.00 3.74
85 86 3.489229 GGGTATGAATCGGCAAAGAAAGC 60.489 47.826 0.00 0.00 0.00 3.51
86 87 3.694072 TGGGTATGAATCGGCAAAGAAAG 59.306 43.478 0.00 0.00 0.00 2.62
88 89 3.013921 GTGGGTATGAATCGGCAAAGAA 58.986 45.455 0.00 0.00 0.00 2.52
89 90 2.238646 AGTGGGTATGAATCGGCAAAGA 59.761 45.455 0.00 0.00 0.00 2.52
91 92 2.026729 TGAGTGGGTATGAATCGGCAAA 60.027 45.455 0.00 0.00 0.00 3.68
92 93 1.557371 TGAGTGGGTATGAATCGGCAA 59.443 47.619 0.00 0.00 0.00 4.52
94 95 1.940613 GTTGAGTGGGTATGAATCGGC 59.059 52.381 0.00 0.00 0.00 5.54
95 96 2.093181 TGGTTGAGTGGGTATGAATCGG 60.093 50.000 0.00 0.00 0.00 4.18
96 97 3.198068 CTGGTTGAGTGGGTATGAATCG 58.802 50.000 0.00 0.00 0.00 3.34
97 98 4.222124 ACTGGTTGAGTGGGTATGAATC 57.778 45.455 0.00 0.00 31.75 2.52
98 99 4.289672 AGAACTGGTTGAGTGGGTATGAAT 59.710 41.667 0.00 0.00 34.02 2.57
99 100 3.650942 AGAACTGGTTGAGTGGGTATGAA 59.349 43.478 0.00 0.00 34.02 2.57
100 101 3.248024 AGAACTGGTTGAGTGGGTATGA 58.752 45.455 0.00 0.00 34.02 2.15
103 104 1.616865 CGAGAACTGGTTGAGTGGGTA 59.383 52.381 0.00 0.00 34.02 3.69
104 105 0.393077 CGAGAACTGGTTGAGTGGGT 59.607 55.000 0.00 0.00 34.02 4.51
106 107 1.784525 GACGAGAACTGGTTGAGTGG 58.215 55.000 0.00 0.00 34.02 4.00
108 109 0.314302 CCGACGAGAACTGGTTGAGT 59.686 55.000 0.00 0.00 35.94 3.41
110 111 0.596577 CTCCGACGAGAACTGGTTGA 59.403 55.000 0.00 0.00 38.52 3.18
111 112 0.596577 TCTCCGACGAGAACTGGTTG 59.403 55.000 0.00 0.00 42.33 3.77
112 113 3.031916 TCTCCGACGAGAACTGGTT 57.968 52.632 0.00 0.00 42.33 3.67
113 114 4.815489 TCTCCGACGAGAACTGGT 57.185 55.556 0.00 0.00 42.33 4.00
120 121 0.656259 TAGCGACAATCTCCGACGAG 59.344 55.000 0.00 0.00 37.48 4.18
123 124 0.595310 GGCTAGCGACAATCTCCGAC 60.595 60.000 9.00 0.00 0.00 4.79
124 125 1.734137 GGCTAGCGACAATCTCCGA 59.266 57.895 9.00 0.00 0.00 4.55
126 127 1.300233 CCGGCTAGCGACAATCTCC 60.300 63.158 9.00 0.00 0.00 3.71
127 128 1.951631 GCCGGCTAGCGACAATCTC 60.952 63.158 22.15 0.00 0.00 2.75
128 129 2.107141 GCCGGCTAGCGACAATCT 59.893 61.111 22.15 0.00 0.00 2.40
129 130 2.107141 AGCCGGCTAGCGACAATC 59.893 61.111 31.86 0.00 38.01 2.67
130 131 2.202932 CAGCCGGCTAGCGACAAT 60.203 61.111 32.30 0.00 38.01 2.71
138 139 4.096003 GGAACTGGCAGCCGGCTA 62.096 66.667 32.30 13.84 44.01 3.93
142 143 3.925630 ATGGTGGAACTGGCAGCCG 62.926 63.158 15.89 4.22 36.74 5.52
143 144 2.036256 ATGGTGGAACTGGCAGCC 59.964 61.111 15.89 3.66 36.74 4.85
144 145 2.048603 GGATGGTGGAACTGGCAGC 61.049 63.158 15.89 0.00 36.74 5.25
145 146 1.746615 CGGATGGTGGAACTGGCAG 60.747 63.158 14.16 14.16 36.74 4.85
146 147 2.350895 CGGATGGTGGAACTGGCA 59.649 61.111 0.00 0.00 36.74 4.92
147 148 3.134127 GCGGATGGTGGAACTGGC 61.134 66.667 0.00 0.00 36.74 4.85
150 151 0.036010 CTCTTGCGGATGGTGGAACT 60.036 55.000 0.00 0.00 36.74 3.01
151 152 0.321653 ACTCTTGCGGATGGTGGAAC 60.322 55.000 0.00 0.00 0.00 3.62
152 153 1.271856 TACTCTTGCGGATGGTGGAA 58.728 50.000 0.00 0.00 0.00 3.53
153 154 1.271856 TTACTCTTGCGGATGGTGGA 58.728 50.000 0.00 0.00 0.00 4.02
155 156 3.242413 CGAAATTACTCTTGCGGATGGTG 60.242 47.826 0.00 0.00 0.00 4.17
156 157 2.936498 CGAAATTACTCTTGCGGATGGT 59.064 45.455 0.00 0.00 0.00 3.55
157 158 2.287915 CCGAAATTACTCTTGCGGATGG 59.712 50.000 0.00 0.00 41.11 3.51
158 159 3.194861 TCCGAAATTACTCTTGCGGATG 58.805 45.455 1.81 0.00 42.29 3.51
159 160 3.132289 TCTCCGAAATTACTCTTGCGGAT 59.868 43.478 6.40 0.00 45.49 4.18
161 162 2.860735 CTCTCCGAAATTACTCTTGCGG 59.139 50.000 0.00 0.00 40.06 5.69
162 163 3.548268 GTCTCTCCGAAATTACTCTTGCG 59.452 47.826 0.00 0.00 0.00 4.85
163 164 4.327627 GTGTCTCTCCGAAATTACTCTTGC 59.672 45.833 0.00 0.00 0.00 4.01
165 166 5.723672 TGTGTCTCTCCGAAATTACTCTT 57.276 39.130 0.00 0.00 0.00 2.85
166 167 5.419155 TGATGTGTCTCTCCGAAATTACTCT 59.581 40.000 0.00 0.00 0.00 3.24
168 169 5.661056 TGATGTGTCTCTCCGAAATTACT 57.339 39.130 0.00 0.00 0.00 2.24
169 170 6.276847 AGATGATGTGTCTCTCCGAAATTAC 58.723 40.000 0.00 0.00 0.00 1.89
170 171 6.471233 AGATGATGTGTCTCTCCGAAATTA 57.529 37.500 0.00 0.00 0.00 1.40
171 172 5.350504 AGATGATGTGTCTCTCCGAAATT 57.649 39.130 0.00 0.00 0.00 1.82
172 173 4.498850 CGAGATGATGTGTCTCTCCGAAAT 60.499 45.833 2.16 0.00 39.92 2.17
174 175 2.356069 CGAGATGATGTGTCTCTCCGAA 59.644 50.000 2.16 0.00 39.92 4.30
176 177 1.001924 CCGAGATGATGTGTCTCTCCG 60.002 57.143 2.16 0.00 39.92 4.63
177 178 2.028130 ACCGAGATGATGTGTCTCTCC 58.972 52.381 2.16 0.00 39.92 3.71
178 179 2.286713 CGACCGAGATGATGTGTCTCTC 60.287 54.545 2.16 0.00 39.92 3.20
179 180 1.673400 CGACCGAGATGATGTGTCTCT 59.327 52.381 2.16 0.00 39.92 3.10
181 182 1.133216 CACGACCGAGATGATGTGTCT 59.867 52.381 0.00 0.00 0.00 3.41
183 184 0.458543 GCACGACCGAGATGATGTGT 60.459 55.000 0.00 0.00 0.00 3.72
184 185 1.148157 GGCACGACCGAGATGATGTG 61.148 60.000 0.00 0.00 0.00 3.21
185 186 1.141881 GGCACGACCGAGATGATGT 59.858 57.895 0.00 0.00 0.00 3.06
186 187 0.873312 CAGGCACGACCGAGATGATG 60.873 60.000 0.00 0.00 46.52 3.07
187 188 1.323271 ACAGGCACGACCGAGATGAT 61.323 55.000 0.00 0.00 46.52 2.45
189 190 1.807165 CACAGGCACGACCGAGATG 60.807 63.158 0.00 0.00 46.52 2.90
190 191 1.977009 TCACAGGCACGACCGAGAT 60.977 57.895 0.00 0.00 46.52 2.75
191 192 2.596338 TCACAGGCACGACCGAGA 60.596 61.111 0.00 0.00 46.52 4.04
192 193 2.430921 GTCACAGGCACGACCGAG 60.431 66.667 0.00 0.00 46.52 4.63
196 197 4.295119 ACGGGTCACAGGCACGAC 62.295 66.667 0.00 0.00 0.00 4.34
197 198 4.293648 CACGGGTCACAGGCACGA 62.294 66.667 0.00 0.00 0.00 4.35
207 208 1.270094 TGAGACATTGTGACACGGGTC 60.270 52.381 11.93 11.93 44.57 4.46
208 209 0.756294 TGAGACATTGTGACACGGGT 59.244 50.000 0.00 0.00 0.00 5.28
210 211 1.148310 GGTGAGACATTGTGACACGG 58.852 55.000 0.22 0.00 33.08 4.94
211 212 0.784178 CGGTGAGACATTGTGACACG 59.216 55.000 0.22 7.84 33.08 4.49
212 213 1.865865 ACGGTGAGACATTGTGACAC 58.134 50.000 0.00 0.00 0.00 3.67
213 214 3.649073 CTTACGGTGAGACATTGTGACA 58.351 45.455 0.00 0.00 0.00 3.58
215 216 2.683968 GCTTACGGTGAGACATTGTGA 58.316 47.619 3.85 0.00 0.00 3.58
216 217 1.390123 CGCTTACGGTGAGACATTGTG 59.610 52.381 3.85 0.00 34.97 3.33
217 218 1.710013 CGCTTACGGTGAGACATTGT 58.290 50.000 3.85 0.00 34.97 2.71
229 230 3.251571 AGAAGCTAAAAGACCGCTTACG 58.748 45.455 0.00 0.00 43.42 3.18
231 232 5.974108 ACATAGAAGCTAAAAGACCGCTTA 58.026 37.500 0.00 0.00 43.42 3.09
232 233 4.833390 ACATAGAAGCTAAAAGACCGCTT 58.167 39.130 0.00 0.00 45.79 4.68
233 234 4.434520 GACATAGAAGCTAAAAGACCGCT 58.565 43.478 0.00 0.00 35.09 5.52
235 236 4.421948 ACGACATAGAAGCTAAAAGACCG 58.578 43.478 0.00 0.00 0.00 4.79
236 237 4.499758 CGACGACATAGAAGCTAAAAGACC 59.500 45.833 0.00 0.00 0.00 3.85
238 239 4.669318 CCGACGACATAGAAGCTAAAAGA 58.331 43.478 0.00 0.00 0.00 2.52
239 240 3.243177 GCCGACGACATAGAAGCTAAAAG 59.757 47.826 0.00 0.00 0.00 2.27
240 241 3.119245 AGCCGACGACATAGAAGCTAAAA 60.119 43.478 0.00 0.00 0.00 1.52
241 242 2.426024 AGCCGACGACATAGAAGCTAAA 59.574 45.455 0.00 0.00 0.00 1.85
243 244 1.676746 AGCCGACGACATAGAAGCTA 58.323 50.000 0.00 0.00 0.00 3.32
244 245 1.676746 TAGCCGACGACATAGAAGCT 58.323 50.000 0.00 0.00 0.00 3.74
245 246 2.320367 CATAGCCGACGACATAGAAGC 58.680 52.381 0.00 0.00 0.00 3.86
247 248 1.000607 GCCATAGCCGACGACATAGAA 60.001 52.381 0.00 0.00 0.00 2.10
248 249 0.596577 GCCATAGCCGACGACATAGA 59.403 55.000 0.00 0.00 0.00 1.98
250 251 0.313987 CTGCCATAGCCGACGACATA 59.686 55.000 0.00 0.00 38.69 2.29
251 252 1.068083 CTGCCATAGCCGACGACAT 59.932 57.895 0.00 0.00 38.69 3.06
254 255 3.536917 CCCTGCCATAGCCGACGA 61.537 66.667 0.00 0.00 38.69 4.20
255 256 2.872388 ATCCCTGCCATAGCCGACG 61.872 63.158 0.00 0.00 38.69 5.12
256 257 1.302033 CATCCCTGCCATAGCCGAC 60.302 63.158 0.00 0.00 38.69 4.79
257 258 1.344953 AACATCCCTGCCATAGCCGA 61.345 55.000 0.00 0.00 38.69 5.54
258 259 0.466189 AAACATCCCTGCCATAGCCG 60.466 55.000 0.00 0.00 38.69 5.52
261 262 4.214119 CGTATGAAAACATCCCTGCCATAG 59.786 45.833 0.00 0.00 0.00 2.23
262 263 4.133820 CGTATGAAAACATCCCTGCCATA 58.866 43.478 0.00 0.00 0.00 2.74
264 265 2.364632 CGTATGAAAACATCCCTGCCA 58.635 47.619 0.00 0.00 0.00 4.92
267 268 2.943033 GTCCCGTATGAAAACATCCCTG 59.057 50.000 0.00 0.00 0.00 4.45
272 273 5.888982 AGGATAGTCCCGTATGAAAACAT 57.111 39.130 0.00 0.00 37.19 2.71
273 274 5.667466 GAAGGATAGTCCCGTATGAAAACA 58.333 41.667 0.00 0.00 37.19 2.83
275 276 4.646040 TCGAAGGATAGTCCCGTATGAAAA 59.354 41.667 0.00 0.00 37.19 2.29
276 277 4.209538 TCGAAGGATAGTCCCGTATGAAA 58.790 43.478 0.00 0.00 37.19 2.69
277 278 3.824133 TCGAAGGATAGTCCCGTATGAA 58.176 45.455 0.00 0.00 37.19 2.57
278 279 3.497103 TCGAAGGATAGTCCCGTATGA 57.503 47.619 0.00 0.00 37.19 2.15
279 280 3.568853 ACTTCGAAGGATAGTCCCGTATG 59.431 47.826 27.86 0.00 37.19 2.39
280 281 3.830121 ACTTCGAAGGATAGTCCCGTAT 58.170 45.455 27.86 0.14 37.19 3.06
281 282 3.287867 ACTTCGAAGGATAGTCCCGTA 57.712 47.619 27.86 0.00 37.19 4.02
282 283 2.140839 ACTTCGAAGGATAGTCCCGT 57.859 50.000 27.86 1.81 37.19 5.28
283 284 2.688958 AGAACTTCGAAGGATAGTCCCG 59.311 50.000 27.86 1.14 37.19 5.14
286 287 4.109050 CAGCAGAACTTCGAAGGATAGTC 58.891 47.826 27.86 15.99 0.00 2.59
287 288 3.118956 CCAGCAGAACTTCGAAGGATAGT 60.119 47.826 27.86 5.44 0.00 2.12
289 290 2.168521 CCCAGCAGAACTTCGAAGGATA 59.831 50.000 27.86 0.00 0.00 2.59
290 291 1.065854 CCCAGCAGAACTTCGAAGGAT 60.066 52.381 27.86 16.80 0.00 3.24
291 292 0.321671 CCCAGCAGAACTTCGAAGGA 59.678 55.000 27.86 0.00 0.00 3.36
292 293 0.674895 CCCCAGCAGAACTTCGAAGG 60.675 60.000 27.86 11.96 0.00 3.46
293 294 1.301677 GCCCCAGCAGAACTTCGAAG 61.302 60.000 23.43 23.43 39.53 3.79
294 295 1.302511 GCCCCAGCAGAACTTCGAA 60.303 57.895 0.00 0.00 39.53 3.71
295 296 2.347490 GCCCCAGCAGAACTTCGA 59.653 61.111 0.00 0.00 39.53 3.71
296 297 2.747855 GGCCCCAGCAGAACTTCG 60.748 66.667 0.00 0.00 42.56 3.79
297 298 0.540597 AAAGGCCCCAGCAGAACTTC 60.541 55.000 0.00 0.00 42.56 3.01
298 299 0.829182 CAAAGGCCCCAGCAGAACTT 60.829 55.000 0.00 0.00 42.56 2.66
301 302 2.601367 GCAAAGGCCCCAGCAGAA 60.601 61.111 0.00 0.00 42.56 3.02
312 313 0.240945 ATTCGAAGCAACGGCAAAGG 59.759 50.000 3.35 0.00 44.61 3.11
314 315 0.039617 CCATTCGAAGCAACGGCAAA 60.040 50.000 3.35 0.00 44.61 3.68
315 316 1.169661 ACCATTCGAAGCAACGGCAA 61.170 50.000 3.35 0.00 44.61 4.52
316 317 1.169661 AACCATTCGAAGCAACGGCA 61.170 50.000 3.35 0.00 44.61 5.69
317 318 0.729140 CAACCATTCGAAGCAACGGC 60.729 55.000 3.35 0.00 41.61 5.68
321 322 0.111446 TCCCCAACCATTCGAAGCAA 59.889 50.000 3.35 0.00 0.00 3.91
322 323 0.111446 TTCCCCAACCATTCGAAGCA 59.889 50.000 3.35 0.00 0.00 3.91
325 326 2.640826 ACTAGTTCCCCAACCATTCGAA 59.359 45.455 0.00 0.00 32.22 3.71
328 329 4.028993 TGAACTAGTTCCCCAACCATTC 57.971 45.455 28.43 4.68 38.77 2.67
329 330 4.202673 ACATGAACTAGTTCCCCAACCATT 60.203 41.667 28.43 6.61 38.77 3.16
330 331 3.333680 ACATGAACTAGTTCCCCAACCAT 59.666 43.478 28.43 13.96 38.77 3.55
331 332 2.714250 ACATGAACTAGTTCCCCAACCA 59.286 45.455 28.43 12.37 38.77 3.67
332 333 3.081804 CACATGAACTAGTTCCCCAACC 58.918 50.000 28.43 7.15 38.77 3.77
333 334 3.502211 CACACATGAACTAGTTCCCCAAC 59.498 47.826 28.43 7.84 38.77 3.77
334 335 3.137544 ACACACATGAACTAGTTCCCCAA 59.862 43.478 28.43 13.48 38.77 4.12
336 337 3.074412 CACACACATGAACTAGTTCCCC 58.926 50.000 28.43 9.23 38.77 4.81
337 338 2.484264 GCACACACATGAACTAGTTCCC 59.516 50.000 28.43 9.92 38.77 3.97
338 339 2.484264 GGCACACACATGAACTAGTTCC 59.516 50.000 28.43 13.89 38.77 3.62
339 340 3.138304 TGGCACACACATGAACTAGTTC 58.862 45.455 25.73 25.73 39.91 3.01
340 341 3.207265 TGGCACACACATGAACTAGTT 57.793 42.857 8.13 8.13 0.00 2.24
366 367 4.719273 TGATAGTATGGACATTGGACACCA 59.281 41.667 0.00 0.00 36.83 4.17
367 368 5.290493 TGATAGTATGGACATTGGACACC 57.710 43.478 0.00 0.00 0.00 4.16
368 369 7.336931 AGTTTTGATAGTATGGACATTGGACAC 59.663 37.037 0.00 0.00 0.00 3.67
369 370 7.402054 AGTTTTGATAGTATGGACATTGGACA 58.598 34.615 0.00 0.00 0.00 4.02
370 371 7.865706 AGTTTTGATAGTATGGACATTGGAC 57.134 36.000 0.00 0.00 0.00 4.02
371 372 7.888021 ACAAGTTTTGATAGTATGGACATTGGA 59.112 33.333 0.00 0.00 0.00 3.53
372 373 8.055279 ACAAGTTTTGATAGTATGGACATTGG 57.945 34.615 0.00 0.00 0.00 3.16
376 377 9.214957 CAGTTACAAGTTTTGATAGTATGGACA 57.785 33.333 0.00 0.00 0.00 4.02
378 379 7.064134 CGCAGTTACAAGTTTTGATAGTATGGA 59.936 37.037 0.00 0.00 0.00 3.41
380 381 7.064134 TCCGCAGTTACAAGTTTTGATAGTATG 59.936 37.037 0.00 0.00 0.00 2.39
381 382 7.101054 TCCGCAGTTACAAGTTTTGATAGTAT 58.899 34.615 0.00 0.00 0.00 2.12
382 383 6.457355 TCCGCAGTTACAAGTTTTGATAGTA 58.543 36.000 0.00 0.00 0.00 1.82
383 384 5.302360 TCCGCAGTTACAAGTTTTGATAGT 58.698 37.500 0.00 0.00 0.00 2.12
384 385 5.637810 TCTCCGCAGTTACAAGTTTTGATAG 59.362 40.000 0.00 0.00 0.00 2.08
385 386 5.543714 TCTCCGCAGTTACAAGTTTTGATA 58.456 37.500 0.00 0.00 0.00 2.15
386 387 4.385825 TCTCCGCAGTTACAAGTTTTGAT 58.614 39.130 0.00 0.00 0.00 2.57
387 388 3.799366 TCTCCGCAGTTACAAGTTTTGA 58.201 40.909 0.00 0.00 0.00 2.69
389 390 3.139077 CCTCTCCGCAGTTACAAGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
390 391 2.767505 CCTCTCCGCAGTTACAAGTTT 58.232 47.619 0.00 0.00 0.00 2.66
391 392 1.608283 GCCTCTCCGCAGTTACAAGTT 60.608 52.381 0.00 0.00 0.00 2.66
392 393 0.037232 GCCTCTCCGCAGTTACAAGT 60.037 55.000 0.00 0.00 0.00 3.16
394 395 2.054458 TGCCTCTCCGCAGTTACAA 58.946 52.632 0.00 0.00 33.92 2.41
401 402 1.830587 AATCACACTGCCTCTCCGCA 61.831 55.000 0.00 0.00 37.19 5.69
402 403 1.078848 AATCACACTGCCTCTCCGC 60.079 57.895 0.00 0.00 0.00 5.54
404 405 0.908198 AGGAATCACACTGCCTCTCC 59.092 55.000 0.00 0.00 0.00 3.71
406 407 0.617413 CCAGGAATCACACTGCCTCT 59.383 55.000 0.00 0.00 33.43 3.69
408 409 0.037303 CACCAGGAATCACACTGCCT 59.963 55.000 0.00 0.00 33.43 4.75
409 410 0.250901 ACACCAGGAATCACACTGCC 60.251 55.000 0.00 0.00 33.43 4.85
411 412 2.260844 ACACACCAGGAATCACACTG 57.739 50.000 0.00 0.00 34.54 3.66
412 413 3.135712 TGTTACACACCAGGAATCACACT 59.864 43.478 0.00 0.00 0.00 3.55
413 414 3.472652 TGTTACACACCAGGAATCACAC 58.527 45.455 0.00 0.00 0.00 3.82
415 416 3.740115 ACTGTTACACACCAGGAATCAC 58.260 45.455 0.00 0.00 32.90 3.06
417 418 6.228258 TCTTTACTGTTACACACCAGGAATC 58.772 40.000 0.00 0.00 31.78 2.52
418 419 6.182507 TCTTTACTGTTACACACCAGGAAT 57.817 37.500 0.00 0.00 31.78 3.01
419 420 5.617528 TCTTTACTGTTACACACCAGGAA 57.382 39.130 0.00 0.00 32.90 3.36
420 421 5.071250 ACATCTTTACTGTTACACACCAGGA 59.929 40.000 0.00 0.00 32.90 3.86
421 422 5.179368 CACATCTTTACTGTTACACACCAGG 59.821 44.000 0.00 0.00 32.90 4.45
422 423 5.334105 GCACATCTTTACTGTTACACACCAG 60.334 44.000 0.00 0.00 34.82 4.00
423 424 4.513692 GCACATCTTTACTGTTACACACCA 59.486 41.667 0.00 0.00 0.00 4.17
424 425 4.513692 TGCACATCTTTACTGTTACACACC 59.486 41.667 0.00 0.00 0.00 4.16
425 426 5.666969 TGCACATCTTTACTGTTACACAC 57.333 39.130 0.00 0.00 0.00 3.82
426 427 5.277106 CGTTGCACATCTTTACTGTTACACA 60.277 40.000 0.00 0.00 0.00 3.72
429 430 5.338614 ACGTTGCACATCTTTACTGTTAC 57.661 39.130 0.00 0.00 0.00 2.50
430 431 5.994887 AACGTTGCACATCTTTACTGTTA 57.005 34.783 0.00 0.00 0.00 2.41
432 433 5.932303 AGATAACGTTGCACATCTTTACTGT 59.068 36.000 11.99 0.00 0.00 3.55
433 434 6.128553 ACAGATAACGTTGCACATCTTTACTG 60.129 38.462 11.99 2.71 0.00 2.74
434 435 5.932303 ACAGATAACGTTGCACATCTTTACT 59.068 36.000 11.99 0.00 0.00 2.24
435 436 6.165659 ACAGATAACGTTGCACATCTTTAC 57.834 37.500 11.99 0.00 0.00 2.01
437 438 6.090898 GTCTACAGATAACGTTGCACATCTTT 59.909 38.462 11.99 6.85 0.00 2.52
438 439 5.577164 GTCTACAGATAACGTTGCACATCTT 59.423 40.000 11.99 5.20 0.00 2.40
439 440 5.103000 GTCTACAGATAACGTTGCACATCT 58.897 41.667 11.99 8.28 0.00 2.90
440 441 5.004821 CAGTCTACAGATAACGTTGCACATC 59.995 44.000 11.99 5.84 0.00 3.06
441 442 4.864806 CAGTCTACAGATAACGTTGCACAT 59.135 41.667 11.99 0.00 0.00 3.21
443 444 4.235360 ACAGTCTACAGATAACGTTGCAC 58.765 43.478 11.99 2.07 0.00 4.57
444 445 4.514781 ACAGTCTACAGATAACGTTGCA 57.485 40.909 11.99 0.00 0.00 4.08
445 446 5.512082 CACTACAGTCTACAGATAACGTTGC 59.488 44.000 11.99 2.73 0.00 4.17
448 449 6.814506 AACACTACAGTCTACAGATAACGT 57.185 37.500 0.00 0.00 0.00 3.99
462 463 7.522399 AGAAGCTTCTGTACTGTAACACTACAG 60.522 40.741 27.96 11.70 46.29 2.74
464 465 6.679843 AGAAGCTTCTGTACTGTAACACTAC 58.320 40.000 27.96 0.00 35.89 2.73
465 466 6.896021 AGAAGCTTCTGTACTGTAACACTA 57.104 37.500 27.96 0.00 35.89 2.74
466 467 5.793030 AGAAGCTTCTGTACTGTAACACT 57.207 39.130 27.96 0.00 35.89 3.55
479 480 5.009010 CCAAAATGTACACACAGAAGCTTCT 59.991 40.000 23.49 23.49 38.30 2.85
480 481 5.215160 CCAAAATGTACACACAGAAGCTTC 58.785 41.667 19.11 19.11 38.30 3.86
481 482 4.037923 CCCAAAATGTACACACAGAAGCTT 59.962 41.667 0.00 0.00 38.30 3.74
483 484 3.857010 GCCCAAAATGTACACACAGAAGC 60.857 47.826 0.00 0.00 38.30 3.86
484 485 3.569701 AGCCCAAAATGTACACACAGAAG 59.430 43.478 0.00 0.00 38.30 2.85
486 487 3.222173 AGCCCAAAATGTACACACAGA 57.778 42.857 0.00 0.00 38.30 3.41
487 488 3.068024 ACAAGCCCAAAATGTACACACAG 59.932 43.478 0.00 0.00 38.30 3.66
488 489 3.027412 ACAAGCCCAAAATGTACACACA 58.973 40.909 0.00 0.00 39.52 3.72
489 490 3.380142 CACAAGCCCAAAATGTACACAC 58.620 45.455 0.00 0.00 0.00 3.82
490 491 2.363680 CCACAAGCCCAAAATGTACACA 59.636 45.455 0.00 0.00 0.00 3.72
491 492 2.625790 TCCACAAGCCCAAAATGTACAC 59.374 45.455 0.00 0.00 0.00 2.90
493 494 3.509575 TGATCCACAAGCCCAAAATGTAC 59.490 43.478 0.00 0.00 0.00 2.90
495 496 2.607499 TGATCCACAAGCCCAAAATGT 58.393 42.857 0.00 0.00 0.00 2.71
496 497 3.055675 ACATGATCCACAAGCCCAAAATG 60.056 43.478 0.00 0.00 0.00 2.32
497 498 3.175594 ACATGATCCACAAGCCCAAAAT 58.824 40.909 0.00 0.00 0.00 1.82
498 499 2.607499 ACATGATCCACAAGCCCAAAA 58.393 42.857 0.00 0.00 0.00 2.44
499 500 2.307496 ACATGATCCACAAGCCCAAA 57.693 45.000 0.00 0.00 0.00 3.28
500 501 2.040947 TGTACATGATCCACAAGCCCAA 59.959 45.455 0.00 0.00 0.00 4.12
501 502 1.632920 TGTACATGATCCACAAGCCCA 59.367 47.619 0.00 0.00 0.00 5.36
502 503 2.292267 CTGTACATGATCCACAAGCCC 58.708 52.381 0.00 0.00 0.00 5.19
503 504 1.672881 GCTGTACATGATCCACAAGCC 59.327 52.381 0.00 0.00 0.00 4.35
504 505 1.328680 CGCTGTACATGATCCACAAGC 59.671 52.381 0.00 0.00 0.00 4.01
505 506 1.935873 CCGCTGTACATGATCCACAAG 59.064 52.381 0.00 0.00 0.00 3.16
507 508 0.901827 ACCGCTGTACATGATCCACA 59.098 50.000 0.00 0.00 0.00 4.17
508 509 2.470821 GTACCGCTGTACATGATCCAC 58.529 52.381 12.95 0.00 45.50 4.02
524 525 4.933400 ACATCAAACAATCGGTACAGTACC 59.067 41.667 18.85 18.85 45.52 3.34
525 526 5.407387 ACACATCAAACAATCGGTACAGTAC 59.593 40.000 1.59 1.59 0.00 2.73
526 527 5.543714 ACACATCAAACAATCGGTACAGTA 58.456 37.500 0.00 0.00 0.00 2.74
527 528 4.385825 ACACATCAAACAATCGGTACAGT 58.614 39.130 0.00 0.00 0.00 3.55
528 529 5.867174 TCTACACATCAAACAATCGGTACAG 59.133 40.000 0.00 0.00 0.00 2.74
529 530 5.785243 TCTACACATCAAACAATCGGTACA 58.215 37.500 0.00 0.00 0.00 2.90
532 533 6.627395 TTTTCTACACATCAAACAATCGGT 57.373 33.333 0.00 0.00 0.00 4.69
533 534 9.787532 ATTATTTTCTACACATCAAACAATCGG 57.212 29.630 0.00 0.00 0.00 4.18
590 591 9.519191 CAGAGAGGATATCGGATATCTCATTAT 57.481 37.037 28.08 14.47 41.08 1.28
591 592 8.718656 TCAGAGAGGATATCGGATATCTCATTA 58.281 37.037 28.08 12.03 41.08 1.90
592 593 7.581814 TCAGAGAGGATATCGGATATCTCATT 58.418 38.462 28.08 16.29 41.08 2.57
593 594 7.147958 TCAGAGAGGATATCGGATATCTCAT 57.852 40.000 28.08 18.46 41.08 2.90
594 595 6.567602 TCAGAGAGGATATCGGATATCTCA 57.432 41.667 28.08 9.35 41.08 3.27
595 596 6.998074 ACATCAGAGAGGATATCGGATATCTC 59.002 42.308 28.08 23.14 41.08 2.75
596 597 6.910191 ACATCAGAGAGGATATCGGATATCT 58.090 40.000 28.08 18.28 41.08 1.98
597 598 6.206634 GGACATCAGAGAGGATATCGGATATC 59.793 46.154 23.75 23.75 40.68 1.63
598 599 6.068010 GGACATCAGAGAGGATATCGGATAT 58.932 44.000 10.20 10.20 31.58 1.63
599 600 5.441500 GGACATCAGAGAGGATATCGGATA 58.558 45.833 0.00 0.00 31.58 2.59
600 601 4.277476 GGACATCAGAGAGGATATCGGAT 58.723 47.826 0.00 0.00 32.74 4.18
601 602 3.691575 GGACATCAGAGAGGATATCGGA 58.308 50.000 0.00 0.00 0.00 4.55
602 603 2.421775 CGGACATCAGAGAGGATATCGG 59.578 54.545 0.00 0.00 0.00 4.18
603 604 3.339141 TCGGACATCAGAGAGGATATCG 58.661 50.000 0.00 0.00 0.00 2.92
604 605 6.770303 TGATATCGGACATCAGAGAGGATATC 59.230 42.308 0.00 9.89 40.35 1.63
606 607 6.067217 TGATATCGGACATCAGAGAGGATA 57.933 41.667 0.00 0.00 0.00 2.59
607 608 4.928263 TGATATCGGACATCAGAGAGGAT 58.072 43.478 0.00 0.00 0.00 3.24
608 609 4.373156 TGATATCGGACATCAGAGAGGA 57.627 45.455 0.00 0.00 0.00 3.71
609 610 4.522405 AGTTGATATCGGACATCAGAGAGG 59.478 45.833 0.00 0.00 34.07 3.69
610 611 5.459768 CAGTTGATATCGGACATCAGAGAG 58.540 45.833 0.00 0.00 34.07 3.20
612 613 3.986572 GCAGTTGATATCGGACATCAGAG 59.013 47.826 0.00 0.00 34.07 3.35
613 614 3.243873 GGCAGTTGATATCGGACATCAGA 60.244 47.826 0.00 0.00 34.07 3.27
614 615 3.062763 GGCAGTTGATATCGGACATCAG 58.937 50.000 0.00 0.00 34.07 2.90
617 618 1.768275 TGGGCAGTTGATATCGGACAT 59.232 47.619 10.54 0.00 0.00 3.06
619 620 2.550830 ATGGGCAGTTGATATCGGAC 57.449 50.000 0.00 0.00 0.00 4.79
620 621 4.908601 ATTATGGGCAGTTGATATCGGA 57.091 40.909 0.00 0.00 0.00 4.55
621 622 4.156556 CCAATTATGGGCAGTTGATATCGG 59.843 45.833 0.00 0.00 43.51 4.18
622 623 5.300969 CCAATTATGGGCAGTTGATATCG 57.699 43.478 0.00 0.00 43.51 2.92
646 647 2.161855 CAGCACATTTAGTTCAGGGCA 58.838 47.619 0.00 0.00 0.00 5.36
647 648 2.162681 ACAGCACATTTAGTTCAGGGC 58.837 47.619 0.00 0.00 0.00 5.19
648 649 4.520492 AGAAACAGCACATTTAGTTCAGGG 59.480 41.667 0.00 0.00 0.00 4.45
649 650 5.239306 TGAGAAACAGCACATTTAGTTCAGG 59.761 40.000 0.00 0.00 0.00 3.86
660 661 9.677567 GACTTATTTATTTTGAGAAACAGCACA 57.322 29.630 0.00 0.00 0.00 4.57
661 662 9.899226 AGACTTATTTATTTTGAGAAACAGCAC 57.101 29.630 0.00 0.00 0.00 4.40
674 675 9.201989 GGGGGATTGAAGAAGACTTATTTATTT 57.798 33.333 0.00 0.00 36.39 1.40
676 677 6.998673 CGGGGGATTGAAGAAGACTTATTTAT 59.001 38.462 0.00 0.00 36.39 1.40
677 678 6.157297 TCGGGGGATTGAAGAAGACTTATTTA 59.843 38.462 0.00 0.00 36.39 1.40
678 679 5.045140 TCGGGGGATTGAAGAAGACTTATTT 60.045 40.000 0.00 0.00 36.39 1.40
679 680 4.473559 TCGGGGGATTGAAGAAGACTTATT 59.526 41.667 0.00 0.00 36.39 1.40
680 681 4.037927 TCGGGGGATTGAAGAAGACTTAT 58.962 43.478 0.00 0.00 36.39 1.73
681 682 3.446968 TCGGGGGATTGAAGAAGACTTA 58.553 45.455 0.00 0.00 36.39 2.24
682 683 2.237392 CTCGGGGGATTGAAGAAGACTT 59.763 50.000 0.00 0.00 39.24 3.01
683 684 1.834263 CTCGGGGGATTGAAGAAGACT 59.166 52.381 0.00 0.00 0.00 3.24
684 685 1.831736 TCTCGGGGGATTGAAGAAGAC 59.168 52.381 0.00 0.00 0.00 3.01
685 686 2.247699 TCTCGGGGGATTGAAGAAGA 57.752 50.000 0.00 0.00 0.00 2.87
686 687 3.350219 TTTCTCGGGGGATTGAAGAAG 57.650 47.619 0.00 0.00 0.00 2.85
688 689 2.172717 GGATTTCTCGGGGGATTGAAGA 59.827 50.000 0.00 0.00 0.00 2.87
689 690 2.576615 GGATTTCTCGGGGGATTGAAG 58.423 52.381 0.00 0.00 0.00 3.02
691 692 0.843984 GGGATTTCTCGGGGGATTGA 59.156 55.000 0.00 0.00 0.00 2.57
692 693 0.178990 GGGGATTTCTCGGGGGATTG 60.179 60.000 0.00 0.00 0.00 2.67
694 695 0.571236 TAGGGGATTTCTCGGGGGAT 59.429 55.000 0.00 0.00 0.00 3.85
695 696 0.105142 CTAGGGGATTTCTCGGGGGA 60.105 60.000 0.00 0.00 0.00 4.81
696 697 1.769716 GCTAGGGGATTTCTCGGGGG 61.770 65.000 0.00 0.00 0.00 5.40
769 770 1.525535 CATGAGCAGTGCTAGGGGC 60.526 63.158 19.77 5.64 39.88 5.80
778 779 0.455815 TCGCGACATACATGAGCAGT 59.544 50.000 3.71 0.00 35.78 4.40
779 780 1.520174 CTTCGCGACATACATGAGCAG 59.480 52.381 9.15 0.00 35.78 4.24
781 782 0.855349 CCTTCGCGACATACATGAGC 59.145 55.000 9.15 0.93 33.94 4.26
782 783 2.492019 TCCTTCGCGACATACATGAG 57.508 50.000 9.15 0.00 0.00 2.90
783 784 2.809446 CTTCCTTCGCGACATACATGA 58.191 47.619 9.15 0.00 0.00 3.07
784 785 1.258982 GCTTCCTTCGCGACATACATG 59.741 52.381 9.15 0.00 0.00 3.21
785 786 1.137086 AGCTTCCTTCGCGACATACAT 59.863 47.619 9.15 0.00 0.00 2.29
786 787 0.530744 AGCTTCCTTCGCGACATACA 59.469 50.000 9.15 0.00 0.00 2.29
787 788 1.588861 GAAGCTTCCTTCGCGACATAC 59.411 52.381 15.97 0.00 38.24 2.39
788 789 1.922570 GAAGCTTCCTTCGCGACATA 58.077 50.000 15.97 0.00 38.24 2.29
789 790 2.755929 GAAGCTTCCTTCGCGACAT 58.244 52.632 15.97 0.00 38.24 3.06
796 797 4.940046 TGATGAACTGATGAAGCTTCCTTC 59.060 41.667 23.42 19.13 46.15 3.46
828 829 2.681666 CAATGCGACGACGACGAC 59.318 61.111 22.94 14.05 42.66 4.34
841 846 1.113788 ATCAATTCGGTGCCCCAATG 58.886 50.000 0.00 0.00 0.00 2.82
883 888 3.372554 CTCCCTCCTTCCGCGAACC 62.373 68.421 8.23 0.00 0.00 3.62
910 915 1.153086 ATAGCCGCCAAGGAAGCAG 60.153 57.895 4.03 0.00 45.00 4.24
1265 1287 2.432628 GCGGACTTGACCTCGGTG 60.433 66.667 0.00 0.00 0.00 4.94
1360 1397 2.683933 ATTGGGAGAGGACGGCGT 60.684 61.111 14.65 14.65 0.00 5.68
1375 1412 1.675641 GCAGCAGTTGACGGGGATT 60.676 57.895 0.00 0.00 0.00 3.01
1461 1503 4.203950 TGAACGCTGTGACAATTACAAC 57.796 40.909 0.00 0.00 0.00 3.32
1576 1645 7.710475 ACAACCATTTAGACAATTTTGACAAGG 59.290 33.333 0.00 0.00 0.00 3.61
1598 1667 4.419522 AATTATCACTCGGCAACACAAC 57.580 40.909 0.00 0.00 0.00 3.32
1640 1709 5.163513 GTGGAAGTTTAACATTCATGGCTG 58.836 41.667 0.00 0.00 0.00 4.85
1821 1890 2.265589 AGGTTTCCAAGGTACCAACG 57.734 50.000 15.94 1.12 34.32 4.10
2121 2193 7.924541 ACATAAAAAGGTATCCTCACCAAGTA 58.075 34.615 0.00 0.00 41.40 2.24
2383 2472 3.577805 ACATAACACATAAGAGGGGGC 57.422 47.619 0.00 0.00 0.00 5.80
2609 2731 2.375509 GGAAAGGAACTCCAGGGAGAAA 59.624 50.000 21.73 0.00 44.53 2.52
2943 3090 2.928334 ACTGGTCCATGAGATGAATGC 58.072 47.619 0.00 0.00 0.00 3.56
3451 3918 3.055385 TGCAAGTAGGACATGGTACCTTC 60.055 47.826 14.36 6.82 37.68 3.46
3701 4252 5.804639 ACAGAAACAGAAGTGGTATATGCA 58.195 37.500 0.00 0.00 0.00 3.96
3702 4253 6.743575 AACAGAAACAGAAGTGGTATATGC 57.256 37.500 0.00 0.00 0.00 3.14
4310 5028 9.663904 GCATTCAGCGAAGAATAAAATATTACA 57.336 29.630 2.96 0.00 36.13 2.41
4437 5256 3.128764 GCCCTACTGGTTTGCTGATAAAC 59.871 47.826 0.00 0.00 39.28 2.01
4639 5512 4.276926 AGAAATTGCAAGTCAGACCAAGAC 59.723 41.667 4.94 0.00 36.26 3.01
5430 6326 9.897744 CAAACACAGTTGACACATTTATCTTAT 57.102 29.630 0.00 0.00 0.00 1.73
5433 6329 6.183360 TGCAAACACAGTTGACACATTTATCT 60.183 34.615 0.00 0.00 0.00 1.98
5468 6364 8.969121 CACATATGCAAACATGTTCTAGAAAA 57.031 30.769 12.39 1.30 37.04 2.29
5486 6382 8.131100 AGAATTTCGAATAACCAAGCACATATG 58.869 33.333 0.00 0.00 0.00 1.78
5487 6383 8.225603 AGAATTTCGAATAACCAAGCACATAT 57.774 30.769 0.00 0.00 0.00 1.78
5488 6384 7.552687 AGAGAATTTCGAATAACCAAGCACATA 59.447 33.333 0.00 0.00 0.00 2.29
5489 6385 6.375455 AGAGAATTTCGAATAACCAAGCACAT 59.625 34.615 0.00 0.00 0.00 3.21
5490 6386 5.705441 AGAGAATTTCGAATAACCAAGCACA 59.295 36.000 0.00 0.00 0.00 4.57
5491 6387 6.183309 AGAGAATTTCGAATAACCAAGCAC 57.817 37.500 0.00 0.00 0.00 4.40
5492 6388 6.655003 AGAAGAGAATTTCGAATAACCAAGCA 59.345 34.615 0.00 0.00 32.33 3.91
5493 6389 7.078011 AGAAGAGAATTTCGAATAACCAAGC 57.922 36.000 0.00 0.00 32.33 4.01
5494 6390 8.256611 TGAGAAGAGAATTTCGAATAACCAAG 57.743 34.615 0.00 0.00 32.33 3.61
5495 6391 8.792830 ATGAGAAGAGAATTTCGAATAACCAA 57.207 30.769 0.00 0.00 32.33 3.67
5496 6392 8.792830 AATGAGAAGAGAATTTCGAATAACCA 57.207 30.769 0.00 0.00 32.33 3.67
5508 6404 4.272018 CGCCGATCAAAATGAGAAGAGAAT 59.728 41.667 0.00 0.00 0.00 2.40
5510 6406 3.190079 CGCCGATCAAAATGAGAAGAGA 58.810 45.455 0.00 0.00 0.00 3.10
5528 6424 2.299521 AGTACCATAGAGAGACACGCC 58.700 52.381 0.00 0.00 0.00 5.68
5575 6555 1.631405 CAAAGCACCCAAGATTCCCA 58.369 50.000 0.00 0.00 0.00 4.37
5600 6580 3.307691 CCCTTCATACTCAAGCTCACCAA 60.308 47.826 0.00 0.00 0.00 3.67
5622 6603 5.242393 AGTGCATTATATGTCCTGGAAATGC 59.758 40.000 25.50 25.50 45.81 3.56
5636 6620 6.899089 TCTTCCCATTTCAGAGTGCATTATA 58.101 36.000 0.00 0.00 0.00 0.98
5677 6661 3.492102 ACCCGTTATGAATCCATCCTG 57.508 47.619 0.00 0.00 34.31 3.86
5731 6715 3.127895 CCAAGTCACAAACTGTTTTCCGA 59.872 43.478 2.41 0.00 38.58 4.55
5733 6717 3.780902 CCCAAGTCACAAACTGTTTTCC 58.219 45.455 2.41 0.00 38.58 3.13
5754 6742 3.686726 ACTAGTTATTTCTGCTGCACTGC 59.313 43.478 0.00 0.00 0.00 4.40
5838 6827 0.442699 GACGATTCTTGGCCGTGTTC 59.557 55.000 0.00 0.00 36.60 3.18
5866 6855 1.528586 CTGTTCTCTCTGCGGTGTTTG 59.471 52.381 0.00 0.00 0.00 2.93
5868 6857 1.040646 TCTGTTCTCTCTGCGGTGTT 58.959 50.000 0.00 0.00 0.00 3.32
5871 6860 1.621992 TCTTCTGTTCTCTCTGCGGT 58.378 50.000 0.00 0.00 0.00 5.68
5872 6861 2.732412 TTCTTCTGTTCTCTCTGCGG 57.268 50.000 0.00 0.00 0.00 5.69
5989 7018 1.395826 CGGAGAGGGCGGAGAAGAAT 61.396 60.000 0.00 0.00 0.00 2.40
6035 7064 1.760613 ACGCCGGAGATAATTCAGGAA 59.239 47.619 13.83 0.00 34.77 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.