Multiple sequence alignment - TraesCS2D01G139200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G139200 chr2D 100.000 4505 0 0 1 4505 82141529 82146033 0.000000e+00 8320.0
1 TraesCS2D01G139200 chr2D 90.476 1470 114 9 2202 3648 489369823 489368357 0.000000e+00 1916.0
2 TraesCS2D01G139200 chr2D 86.497 1807 167 33 2041 3774 488553834 488552032 0.000000e+00 1914.0
3 TraesCS2D01G139200 chr2D 87.554 1623 149 25 2208 3782 488454269 488452652 0.000000e+00 1829.0
4 TraesCS2D01G139200 chr2D 91.796 1292 69 19 709 1995 488555079 488553820 0.000000e+00 1764.0
5 TraesCS2D01G139200 chr2D 88.193 1406 91 31 607 1995 489371316 489369969 0.000000e+00 1607.0
6 TraesCS2D01G139200 chr2D 86.457 1366 107 34 611 1918 450990246 450991591 0.000000e+00 1426.0
7 TraesCS2D01G139200 chr2D 85.638 1316 136 29 2500 3771 450992707 450994013 0.000000e+00 1334.0
8 TraesCS2D01G139200 chr2D 93.517 617 33 4 1382 1995 488455085 488454473 0.000000e+00 911.0
9 TraesCS2D01G139200 chr2D 96.471 340 11 1 1018 1357 488455409 488455071 1.090000e-155 560.0
10 TraesCS2D01G139200 chr2D 89.527 296 26 3 2191 2482 450992347 450992641 1.980000e-98 370.0
11 TraesCS2D01G139200 chr2D 84.469 367 33 9 573 929 488463774 488463422 1.550000e-89 340.0
12 TraesCS2D01G139200 chr2D 81.570 293 46 5 2504 2790 450984838 450985128 7.530000e-58 235.0
13 TraesCS2D01G139200 chr2D 96.203 79 3 0 4364 4442 200932492 200932414 3.660000e-26 130.0
14 TraesCS2D01G139200 chr2B 92.360 1924 103 16 1874 3779 133979914 133981811 0.000000e+00 2699.0
15 TraesCS2D01G139200 chr2B 86.207 1798 165 39 2047 3770 572705467 572703679 0.000000e+00 1869.0
16 TraesCS2D01G139200 chr2B 89.354 1409 85 31 603 1995 572706818 572705459 0.000000e+00 1711.0
17 TraesCS2D01G139200 chr2B 94.149 1128 43 7 715 1835 133978806 133979917 0.000000e+00 1696.0
18 TraesCS2D01G139200 chr2B 84.966 1317 146 27 2500 3771 531131560 531132869 0.000000e+00 1288.0
19 TraesCS2D01G139200 chr2B 90.564 975 72 7 964 1918 531129440 531130414 0.000000e+00 1273.0
20 TraesCS2D01G139200 chr2B 90.120 415 24 8 3 406 133949644 133950052 1.440000e-144 523.0
21 TraesCS2D01G139200 chr2B 93.617 282 15 3 451 731 133978516 133978795 6.970000e-113 418.0
22 TraesCS2D01G139200 chr2B 93.651 63 2 2 4444 4505 282459295 282459356 4.800000e-15 93.5
23 TraesCS2D01G139200 chr2B 92.424 66 4 1 4441 4505 476572467 476572532 4.800000e-15 93.5
24 TraesCS2D01G139200 chr2A 87.172 1372 103 35 610 1921 598624024 598622666 0.000000e+00 1491.0
25 TraesCS2D01G139200 chr2A 85.703 1315 133 28 2500 3771 598621592 598620290 0.000000e+00 1336.0
26 TraesCS2D01G139200 chr2A 88.673 309 29 3 2194 2496 598621949 598621641 5.500000e-99 372.0
27 TraesCS2D01G139200 chr2A 89.377 273 29 0 4091 4363 82339138 82339410 1.200000e-90 344.0
28 TraesCS2D01G139200 chr3D 85.139 397 56 3 3786 4179 165765606 165765210 1.950000e-108 403.0
29 TraesCS2D01G139200 chr3D 89.024 82 6 3 4179 4258 165772625 165772545 1.030000e-16 99.0
30 TraesCS2D01G139200 chr7B 84.887 397 57 2 3784 4179 228015185 228014791 9.080000e-107 398.0
31 TraesCS2D01G139200 chr7B 92.308 78 6 0 4181 4258 115964579 115964502 1.320000e-20 111.0
32 TraesCS2D01G139200 chr7B 94.366 71 4 0 4188 4258 498093144 498093074 4.760000e-20 110.0
33 TraesCS2D01G139200 chr6B 84.367 403 56 6 3781 4179 386204784 386205183 5.460000e-104 388.0
34 TraesCS2D01G139200 chr6B 83.459 399 61 4 3781 4178 550178990 550179384 2.560000e-97 366.0
35 TraesCS2D01G139200 chr6B 90.909 77 7 0 4182 4258 386205836 386205912 2.220000e-18 104.0
36 TraesCS2D01G139200 chr3A 83.920 398 60 4 3784 4179 624752832 624752437 1.180000e-100 377.0
37 TraesCS2D01G139200 chr3B 83.979 387 60 2 3781 4166 556925867 556926252 1.980000e-98 370.0
38 TraesCS2D01G139200 chr3B 74.560 511 108 21 1283 1782 507796874 507797373 2.120000e-48 204.0
39 TraesCS2D01G139200 chr6D 83.375 403 59 8 3781 4177 75744344 75744744 2.560000e-97 366.0
40 TraesCS2D01G139200 chr6D 89.804 255 19 6 83 333 348087857 348087606 2.020000e-83 320.0
41 TraesCS2D01G139200 chr6D 96.203 79 3 0 4364 4442 102373089 102373167 3.660000e-26 130.0
42 TraesCS2D01G139200 chr6A 83.127 403 63 5 3781 4179 461423895 461424296 3.310000e-96 363.0
43 TraesCS2D01G139200 chr6A 96.203 79 3 0 4364 4442 64687815 64687737 3.660000e-26 130.0
44 TraesCS2D01G139200 chr6A 96.552 58 1 1 4449 4505 219194682 219194739 1.330000e-15 95.3
45 TraesCS2D01G139200 chr1B 83.459 399 57 6 3784 4176 31865292 31865687 3.310000e-96 363.0
46 TraesCS2D01G139200 chr1B 96.203 79 3 0 4364 4442 672580634 672580556 3.660000e-26 130.0
47 TraesCS2D01G139200 chr1B 98.305 59 1 0 4200 4258 444382269 444382211 2.220000e-18 104.0
48 TraesCS2D01G139200 chr7D 89.535 258 20 5 80 333 363048663 363048917 2.020000e-83 320.0
49 TraesCS2D01G139200 chr5D 87.546 273 26 6 76 344 443651567 443651835 4.380000e-80 309.0
50 TraesCS2D01G139200 chr5D 96.203 79 3 0 4364 4442 562922732 562922654 3.660000e-26 130.0
51 TraesCS2D01G139200 chr5D 95.652 69 2 1 4188 4256 328431320 328431387 4.760000e-20 110.0
52 TraesCS2D01G139200 chr4D 90.123 243 17 6 91 329 145579756 145579517 4.380000e-80 309.0
53 TraesCS2D01G139200 chr4D 86.891 267 24 8 80 341 9306116 9306376 5.700000e-74 289.0
54 TraesCS2D01G139200 chr4D 95.181 83 3 1 4364 4445 383936766 383936684 3.660000e-26 130.0
55 TraesCS2D01G139200 chr4D 95.082 61 2 1 4446 4505 108006606 108006546 1.330000e-15 95.3
56 TraesCS2D01G139200 chr4D 93.750 64 2 2 4443 4505 300313175 300313237 1.330000e-15 95.3
57 TraesCS2D01G139200 chr4D 93.651 63 3 1 4444 4505 364011222 364011284 4.800000e-15 93.5
58 TraesCS2D01G139200 chr4A 87.984 258 24 5 90 343 24555077 24555331 9.470000e-77 298.0
59 TraesCS2D01G139200 chr5B 88.710 248 21 5 90 333 447183488 447183244 3.410000e-76 296.0
60 TraesCS2D01G139200 chr1A 87.843 255 24 5 83 333 464856238 464855987 4.410000e-75 292.0
61 TraesCS2D01G139200 chrUn 96.203 79 3 0 4364 4442 189420103 189420025 3.660000e-26 130.0
62 TraesCS2D01G139200 chrUn 95.161 62 2 1 4445 4505 110532827 110532888 3.710000e-16 97.1
63 TraesCS2D01G139200 chr4B 96.203 79 3 0 4364 4442 209132864 209132942 3.660000e-26 130.0
64 TraesCS2D01G139200 chr4B 96.203 79 3 0 4364 4442 209281924 209282002 3.660000e-26 130.0
65 TraesCS2D01G139200 chr4B 89.286 84 8 1 4174 4256 73827809 73827892 2.220000e-18 104.0
66 TraesCS2D01G139200 chr5A 92.208 77 6 0 4182 4258 569297979 569298055 4.760000e-20 110.0
67 TraesCS2D01G139200 chr5A 95.238 63 1 2 4445 4505 410248378 410248440 1.030000e-16 99.0
68 TraesCS2D01G139200 chr7A 91.045 67 4 2 4441 4505 336659779 336659713 6.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G139200 chr2D 82141529 82146033 4504 False 8320.000000 8320 100.000000 1 4505 1 chr2D.!!$F1 4504
1 TraesCS2D01G139200 chr2D 488552032 488555079 3047 True 1839.000000 1914 89.146500 709 3774 2 chr2D.!!$R4 3065
2 TraesCS2D01G139200 chr2D 489368357 489371316 2959 True 1761.500000 1916 89.334500 607 3648 2 chr2D.!!$R5 3041
3 TraesCS2D01G139200 chr2D 488452652 488455409 2757 True 1100.000000 1829 92.514000 1018 3782 3 chr2D.!!$R3 2764
4 TraesCS2D01G139200 chr2D 450990246 450994013 3767 False 1043.333333 1426 87.207333 611 3771 3 chr2D.!!$F3 3160
5 TraesCS2D01G139200 chr2B 572703679 572706818 3139 True 1790.000000 1869 87.780500 603 3770 2 chr2B.!!$R1 3167
6 TraesCS2D01G139200 chr2B 133978516 133981811 3295 False 1604.333333 2699 93.375333 451 3779 3 chr2B.!!$F4 3328
7 TraesCS2D01G139200 chr2B 531129440 531132869 3429 False 1280.500000 1288 87.765000 964 3771 2 chr2B.!!$F5 2807
8 TraesCS2D01G139200 chr2A 598620290 598624024 3734 True 1066.333333 1491 87.182667 610 3771 3 chr2A.!!$R1 3161
9 TraesCS2D01G139200 chr6B 386204784 386205912 1128 False 246.000000 388 87.638000 3781 4258 2 chr6B.!!$F2 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.030101 GATCTCGTCGAGGAGGCAAG 59.970 60.0 29.20 9.67 34.74 4.01 F
1779 1874 0.163788 CGTTCGCATGCTTCGACTTT 59.836 50.0 17.13 0.00 35.51 2.66 F
2039 2687 0.321346 TCTGGTCGATCTTGCTTGCA 59.679 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2668 0.321346 TGCAAGCAAGATCGACCAGA 59.679 50.000 0.0 0.0 0.0 3.86 R
2899 3732 1.202651 CCTCGCCTGGATACCGAAAAT 60.203 52.381 0.0 0.0 0.0 1.82 R
3928 4826 0.171007 CACCGCATGATTGAACCCAC 59.829 55.000 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.736126 TTGTGAAGATATGAAGAGCCGA 57.264 40.909 0.00 0.00 0.00 5.54
25 26 4.313277 TGTGAAGATATGAAGAGCCGAG 57.687 45.455 0.00 0.00 0.00 4.63
26 27 3.056304 GTGAAGATATGAAGAGCCGAGC 58.944 50.000 0.00 0.00 0.00 5.03
27 28 2.961741 TGAAGATATGAAGAGCCGAGCT 59.038 45.455 0.00 0.00 43.88 4.09
28 29 4.022762 GTGAAGATATGAAGAGCCGAGCTA 60.023 45.833 0.00 0.00 39.88 3.32
29 30 4.769488 TGAAGATATGAAGAGCCGAGCTAT 59.231 41.667 0.00 0.00 39.88 2.97
30 31 4.717233 AGATATGAAGAGCCGAGCTATG 57.283 45.455 0.00 0.00 39.88 2.23
31 32 4.085733 AGATATGAAGAGCCGAGCTATGT 58.914 43.478 0.00 0.00 39.88 2.29
32 33 4.526262 AGATATGAAGAGCCGAGCTATGTT 59.474 41.667 0.00 0.00 39.88 2.71
33 34 2.299993 TGAAGAGCCGAGCTATGTTG 57.700 50.000 0.00 0.00 39.88 3.33
34 35 1.824852 TGAAGAGCCGAGCTATGTTGA 59.175 47.619 0.00 0.00 39.88 3.18
35 36 2.432146 TGAAGAGCCGAGCTATGTTGAT 59.568 45.455 0.00 0.00 39.88 2.57
36 37 2.810439 AGAGCCGAGCTATGTTGATC 57.190 50.000 0.00 0.00 39.88 2.92
37 38 1.000827 AGAGCCGAGCTATGTTGATCG 60.001 52.381 0.00 0.00 44.21 3.69
40 41 3.272766 CGAGCTATGTTGATCGGCA 57.727 52.632 0.00 0.00 41.42 5.69
41 42 1.570813 CGAGCTATGTTGATCGGCAA 58.429 50.000 0.00 0.00 41.42 4.52
42 43 2.138320 CGAGCTATGTTGATCGGCAAT 58.862 47.619 0.00 0.00 41.42 3.56
43 44 2.096565 CGAGCTATGTTGATCGGCAATG 60.097 50.000 0.00 0.00 41.42 2.82
44 45 2.874701 GAGCTATGTTGATCGGCAATGT 59.125 45.455 0.00 0.00 39.03 2.71
45 46 3.282021 AGCTATGTTGATCGGCAATGTT 58.718 40.909 0.00 0.00 39.03 2.71
46 47 3.696051 AGCTATGTTGATCGGCAATGTTT 59.304 39.130 0.00 0.00 39.03 2.83
47 48 4.037690 GCTATGTTGATCGGCAATGTTTC 58.962 43.478 0.00 0.00 39.03 2.78
48 49 4.201950 GCTATGTTGATCGGCAATGTTTCT 60.202 41.667 0.00 0.00 39.03 2.52
49 50 3.829886 TGTTGATCGGCAATGTTTCTC 57.170 42.857 0.00 0.00 39.03 2.87
50 51 2.487762 TGTTGATCGGCAATGTTTCTCC 59.512 45.455 0.00 0.00 39.03 3.71
51 52 2.487762 GTTGATCGGCAATGTTTCTCCA 59.512 45.455 0.00 0.00 39.03 3.86
52 53 3.003394 TGATCGGCAATGTTTCTCCAT 57.997 42.857 0.00 0.00 0.00 3.41
53 54 4.149511 TGATCGGCAATGTTTCTCCATA 57.850 40.909 0.00 0.00 0.00 2.74
54 55 4.717877 TGATCGGCAATGTTTCTCCATAT 58.282 39.130 0.00 0.00 0.00 1.78
55 56 5.863965 TGATCGGCAATGTTTCTCCATATA 58.136 37.500 0.00 0.00 0.00 0.86
56 57 6.475504 TGATCGGCAATGTTTCTCCATATAT 58.524 36.000 0.00 0.00 0.00 0.86
57 58 7.619965 TGATCGGCAATGTTTCTCCATATATA 58.380 34.615 0.00 0.00 0.00 0.86
58 59 8.267183 TGATCGGCAATGTTTCTCCATATATAT 58.733 33.333 0.00 0.00 0.00 0.86
59 60 9.113838 GATCGGCAATGTTTCTCCATATATATT 57.886 33.333 0.00 0.00 0.00 1.28
60 61 8.267620 TCGGCAATGTTTCTCCATATATATTG 57.732 34.615 0.00 0.00 0.00 1.90
61 62 8.100164 TCGGCAATGTTTCTCCATATATATTGA 58.900 33.333 0.00 0.00 0.00 2.57
62 63 8.729756 CGGCAATGTTTCTCCATATATATTGAA 58.270 33.333 0.00 0.00 0.00 2.69
85 86 9.487790 TGAAACAAGATGAAAACAATTAATCCC 57.512 29.630 0.00 0.00 0.00 3.85
86 87 9.710900 GAAACAAGATGAAAACAATTAATCCCT 57.289 29.630 0.00 0.00 0.00 4.20
87 88 9.710900 AAACAAGATGAAAACAATTAATCCCTC 57.289 29.630 0.00 0.00 0.00 4.30
88 89 8.655935 ACAAGATGAAAACAATTAATCCCTCT 57.344 30.769 0.00 0.00 0.00 3.69
89 90 8.526147 ACAAGATGAAAACAATTAATCCCTCTG 58.474 33.333 0.00 0.00 0.00 3.35
90 91 8.526147 CAAGATGAAAACAATTAATCCCTCTGT 58.474 33.333 0.00 0.00 0.00 3.41
91 92 8.655935 AGATGAAAACAATTAATCCCTCTGTT 57.344 30.769 0.00 0.00 0.00 3.16
92 93 9.093458 AGATGAAAACAATTAATCCCTCTGTTT 57.907 29.630 8.67 8.67 40.87 2.83
95 96 9.323985 TGAAAACAATTAATCCCTCTGTTTTTG 57.676 29.630 20.66 3.43 45.41 2.44
96 97 9.325198 GAAAACAATTAATCCCTCTGTTTTTGT 57.675 29.630 20.66 7.03 45.41 2.83
97 98 9.679661 AAAACAATTAATCCCTCTGTTTTTGTT 57.320 25.926 16.69 6.05 43.89 2.83
99 100 9.758651 AACAATTAATCCCTCTGTTTTTGTTAC 57.241 29.630 0.00 0.00 34.17 2.50
100 101 9.143155 ACAATTAATCCCTCTGTTTTTGTTACT 57.857 29.630 0.00 0.00 0.00 2.24
101 102 9.626045 CAATTAATCCCTCTGTTTTTGTTACTC 57.374 33.333 0.00 0.00 0.00 2.59
102 103 7.754851 TTAATCCCTCTGTTTTTGTTACTCC 57.245 36.000 0.00 0.00 0.00 3.85
103 104 3.735591 TCCCTCTGTTTTTGTTACTCCG 58.264 45.455 0.00 0.00 0.00 4.63
104 105 2.225727 CCCTCTGTTTTTGTTACTCCGC 59.774 50.000 0.00 0.00 0.00 5.54
105 106 2.875933 CCTCTGTTTTTGTTACTCCGCA 59.124 45.455 0.00 0.00 0.00 5.69
106 107 3.502211 CCTCTGTTTTTGTTACTCCGCAT 59.498 43.478 0.00 0.00 0.00 4.73
107 108 4.693566 CCTCTGTTTTTGTTACTCCGCATA 59.306 41.667 0.00 0.00 0.00 3.14
108 109 5.354234 CCTCTGTTTTTGTTACTCCGCATAT 59.646 40.000 0.00 0.00 0.00 1.78
109 110 6.128007 CCTCTGTTTTTGTTACTCCGCATATT 60.128 38.462 0.00 0.00 0.00 1.28
110 111 7.065324 CCTCTGTTTTTGTTACTCCGCATATTA 59.935 37.037 0.00 0.00 0.00 0.98
111 112 7.970384 TCTGTTTTTGTTACTCCGCATATTAG 58.030 34.615 0.00 0.00 0.00 1.73
112 113 6.548171 TGTTTTTGTTACTCCGCATATTAGC 58.452 36.000 0.00 0.00 0.00 3.09
113 114 6.373216 TGTTTTTGTTACTCCGCATATTAGCT 59.627 34.615 0.00 0.00 0.00 3.32
114 115 6.995511 TTTTGTTACTCCGCATATTAGCTT 57.004 33.333 0.00 0.00 0.00 3.74
115 116 6.995511 TTTGTTACTCCGCATATTAGCTTT 57.004 33.333 0.00 0.00 0.00 3.51
116 117 5.984233 TGTTACTCCGCATATTAGCTTTG 57.016 39.130 0.00 0.00 0.00 2.77
117 118 5.666462 TGTTACTCCGCATATTAGCTTTGA 58.334 37.500 0.00 0.00 0.00 2.69
118 119 5.522460 TGTTACTCCGCATATTAGCTTTGAC 59.478 40.000 0.00 0.00 0.00 3.18
119 120 4.408182 ACTCCGCATATTAGCTTTGACT 57.592 40.909 0.00 0.00 0.00 3.41
120 121 4.122776 ACTCCGCATATTAGCTTTGACTG 58.877 43.478 0.00 0.00 0.00 3.51
121 122 4.141937 ACTCCGCATATTAGCTTTGACTGA 60.142 41.667 0.00 0.00 0.00 3.41
122 123 4.765273 TCCGCATATTAGCTTTGACTGAA 58.235 39.130 0.00 0.00 0.00 3.02
123 124 4.811024 TCCGCATATTAGCTTTGACTGAAG 59.189 41.667 0.00 0.00 0.00 3.02
124 125 4.572389 CCGCATATTAGCTTTGACTGAAGT 59.428 41.667 0.00 0.00 0.00 3.01
125 126 5.277058 CCGCATATTAGCTTTGACTGAAGTC 60.277 44.000 3.41 3.41 44.97 3.01
239 240 9.645128 TGATGAATCCAATTGTATAGATTTGGT 57.355 29.630 18.08 5.35 0.00 3.67
240 241 9.903682 GATGAATCCAATTGTATAGATTTGGTG 57.096 33.333 18.08 0.99 0.00 4.17
241 242 8.236585 TGAATCCAATTGTATAGATTTGGTGG 57.763 34.615 18.08 0.79 0.00 4.61
242 243 7.838696 TGAATCCAATTGTATAGATTTGGTGGT 59.161 33.333 18.08 8.69 0.00 4.16
243 244 7.587037 ATCCAATTGTATAGATTTGGTGGTG 57.413 36.000 18.08 0.00 0.00 4.17
244 245 6.489603 TCCAATTGTATAGATTTGGTGGTGT 58.510 36.000 18.08 0.00 0.00 4.16
245 246 7.634718 TCCAATTGTATAGATTTGGTGGTGTA 58.365 34.615 18.08 1.63 0.00 2.90
246 247 8.278639 TCCAATTGTATAGATTTGGTGGTGTAT 58.721 33.333 18.08 0.00 0.00 2.29
247 248 9.567776 CCAATTGTATAGATTTGGTGGTGTATA 57.432 33.333 12.99 0.00 0.00 1.47
312 313 8.782533 GTTTGACTTTAGACAAACCTAATGTG 57.217 34.615 19.88 0.00 46.80 3.21
313 314 6.554334 TGACTTTAGACAAACCTAATGTGC 57.446 37.500 0.00 0.00 37.23 4.57
314 315 5.178623 TGACTTTAGACAAACCTAATGTGCG 59.821 40.000 0.00 0.00 37.23 5.34
315 316 5.061179 ACTTTAGACAAACCTAATGTGCGT 58.939 37.500 0.00 0.00 36.37 5.24
316 317 6.225318 ACTTTAGACAAACCTAATGTGCGTA 58.775 36.000 0.00 0.00 36.37 4.42
317 318 6.367969 ACTTTAGACAAACCTAATGTGCGTAG 59.632 38.462 0.00 0.00 36.37 3.51
318 319 4.267349 AGACAAACCTAATGTGCGTAGT 57.733 40.909 0.00 0.00 0.00 2.73
319 320 5.395682 AGACAAACCTAATGTGCGTAGTA 57.604 39.130 0.00 0.00 0.00 1.82
320 321 5.786311 AGACAAACCTAATGTGCGTAGTAA 58.214 37.500 0.00 0.00 0.00 2.24
321 322 6.225318 AGACAAACCTAATGTGCGTAGTAAA 58.775 36.000 0.00 0.00 0.00 2.01
322 323 6.877322 AGACAAACCTAATGTGCGTAGTAAAT 59.123 34.615 0.00 0.00 0.00 1.40
323 324 8.036575 AGACAAACCTAATGTGCGTAGTAAATA 58.963 33.333 0.00 0.00 0.00 1.40
324 325 8.550710 ACAAACCTAATGTGCGTAGTAAATAA 57.449 30.769 0.00 0.00 0.00 1.40
325 326 9.001542 ACAAACCTAATGTGCGTAGTAAATAAA 57.998 29.630 0.00 0.00 0.00 1.40
326 327 9.828852 CAAACCTAATGTGCGTAGTAAATAAAA 57.171 29.630 0.00 0.00 0.00 1.52
328 329 9.830294 AACCTAATGTGCGTAGTAAATAAAAAC 57.170 29.630 0.00 0.00 0.00 2.43
329 330 9.001542 ACCTAATGTGCGTAGTAAATAAAAACA 57.998 29.630 0.00 0.00 0.00 2.83
330 331 9.485591 CCTAATGTGCGTAGTAAATAAAAACAG 57.514 33.333 0.00 0.00 0.00 3.16
333 334 7.949903 TGTGCGTAGTAAATAAAAACAGAGA 57.050 32.000 0.00 0.00 0.00 3.10
334 335 8.367943 TGTGCGTAGTAAATAAAAACAGAGAA 57.632 30.769 0.00 0.00 0.00 2.87
335 336 8.828644 TGTGCGTAGTAAATAAAAACAGAGAAA 58.171 29.630 0.00 0.00 0.00 2.52
336 337 9.314501 GTGCGTAGTAAATAAAAACAGAGAAAG 57.685 33.333 0.00 0.00 0.00 2.62
337 338 9.048446 TGCGTAGTAAATAAAAACAGAGAAAGT 57.952 29.630 0.00 0.00 0.00 2.66
362 363 9.760077 GTATATGAATAATTATGGGTCGTAGGG 57.240 37.037 0.00 0.00 0.00 3.53
363 364 6.697641 ATGAATAATTATGGGTCGTAGGGT 57.302 37.500 0.00 0.00 0.00 4.34
364 365 6.105397 TGAATAATTATGGGTCGTAGGGTC 57.895 41.667 0.00 0.00 0.00 4.46
365 366 5.603395 TGAATAATTATGGGTCGTAGGGTCA 59.397 40.000 0.00 0.00 0.00 4.02
366 367 3.832615 AATTATGGGTCGTAGGGTCAC 57.167 47.619 0.00 0.00 0.00 3.67
367 368 2.234896 TTATGGGTCGTAGGGTCACA 57.765 50.000 0.00 0.00 0.00 3.58
368 369 2.234896 TATGGGTCGTAGGGTCACAA 57.765 50.000 0.00 0.00 0.00 3.33
369 370 1.580059 ATGGGTCGTAGGGTCACAAT 58.420 50.000 0.00 0.00 0.00 2.71
370 371 1.354101 TGGGTCGTAGGGTCACAATT 58.646 50.000 0.00 0.00 0.00 2.32
371 372 1.002659 TGGGTCGTAGGGTCACAATTG 59.997 52.381 3.24 3.24 0.00 2.32
372 373 1.677820 GGGTCGTAGGGTCACAATTGG 60.678 57.143 10.83 0.00 0.00 3.16
373 374 1.677820 GGTCGTAGGGTCACAATTGGG 60.678 57.143 10.83 5.72 0.00 4.12
374 375 1.276989 GTCGTAGGGTCACAATTGGGA 59.723 52.381 6.21 6.21 0.00 4.37
375 376 1.979308 TCGTAGGGTCACAATTGGGAA 59.021 47.619 13.07 0.00 0.00 3.97
376 377 2.574369 TCGTAGGGTCACAATTGGGAAT 59.426 45.455 13.07 4.26 0.00 3.01
377 378 3.775866 TCGTAGGGTCACAATTGGGAATA 59.224 43.478 13.07 3.23 0.00 1.75
378 379 4.410883 TCGTAGGGTCACAATTGGGAATAT 59.589 41.667 13.07 3.50 0.00 1.28
379 380 5.104277 TCGTAGGGTCACAATTGGGAATATT 60.104 40.000 13.07 1.33 0.00 1.28
380 381 5.008613 CGTAGGGTCACAATTGGGAATATTG 59.991 44.000 13.07 0.00 38.61 1.90
381 382 5.205517 AGGGTCACAATTGGGAATATTGA 57.794 39.130 13.07 0.00 36.67 2.57
382 383 5.780731 AGGGTCACAATTGGGAATATTGAT 58.219 37.500 13.07 0.00 36.67 2.57
383 384 5.835280 AGGGTCACAATTGGGAATATTGATC 59.165 40.000 13.07 3.33 36.67 2.92
384 385 5.835280 GGGTCACAATTGGGAATATTGATCT 59.165 40.000 13.07 0.00 36.67 2.75
385 386 6.015940 GGGTCACAATTGGGAATATTGATCTC 60.016 42.308 13.07 0.00 36.67 2.75
386 387 6.293626 GGTCACAATTGGGAATATTGATCTCG 60.294 42.308 13.07 0.00 36.67 4.04
387 388 6.260936 GTCACAATTGGGAATATTGATCTCGT 59.739 38.462 13.07 0.00 36.67 4.18
388 389 6.483307 TCACAATTGGGAATATTGATCTCGTC 59.517 38.462 8.25 0.00 36.67 4.20
389 390 5.466728 ACAATTGGGAATATTGATCTCGTCG 59.533 40.000 10.83 0.00 36.67 5.12
390 391 4.929819 TTGGGAATATTGATCTCGTCGA 57.070 40.909 0.00 0.00 0.00 4.20
391 392 4.505313 TGGGAATATTGATCTCGTCGAG 57.495 45.455 16.33 16.33 0.00 4.04
392 393 3.255888 TGGGAATATTGATCTCGTCGAGG 59.744 47.826 21.63 0.00 0.00 4.63
393 394 3.506455 GGGAATATTGATCTCGTCGAGGA 59.494 47.826 21.63 7.70 0.00 3.71
394 395 4.380023 GGGAATATTGATCTCGTCGAGGAG 60.380 50.000 25.49 25.49 35.32 3.69
395 396 4.380023 GGAATATTGATCTCGTCGAGGAGG 60.380 50.000 29.20 14.56 34.74 4.30
396 397 0.671251 ATTGATCTCGTCGAGGAGGC 59.329 55.000 29.20 22.34 34.74 4.70
397 398 0.679960 TTGATCTCGTCGAGGAGGCA 60.680 55.000 29.20 24.18 34.74 4.75
398 399 0.679960 TGATCTCGTCGAGGAGGCAA 60.680 55.000 29.20 14.78 34.74 4.52
399 400 0.030101 GATCTCGTCGAGGAGGCAAG 59.970 60.000 29.20 9.67 34.74 4.01
400 401 0.394488 ATCTCGTCGAGGAGGCAAGA 60.394 55.000 29.20 14.32 34.74 3.02
401 402 1.027255 TCTCGTCGAGGAGGCAAGAG 61.027 60.000 29.20 8.35 34.74 2.85
402 403 1.002502 TCGTCGAGGAGGCAAGAGA 60.003 57.895 3.17 0.00 0.00 3.10
403 404 0.394488 TCGTCGAGGAGGCAAGAGAT 60.394 55.000 3.17 0.00 0.00 2.75
404 405 1.134189 TCGTCGAGGAGGCAAGAGATA 60.134 52.381 3.17 0.00 0.00 1.98
405 406 1.676529 CGTCGAGGAGGCAAGAGATAA 59.323 52.381 0.00 0.00 0.00 1.75
406 407 2.099263 CGTCGAGGAGGCAAGAGATAAA 59.901 50.000 0.00 0.00 0.00 1.40
407 408 3.428999 CGTCGAGGAGGCAAGAGATAAAA 60.429 47.826 0.00 0.00 0.00 1.52
408 409 4.116238 GTCGAGGAGGCAAGAGATAAAAG 58.884 47.826 0.00 0.00 0.00 2.27
409 410 3.769844 TCGAGGAGGCAAGAGATAAAAGT 59.230 43.478 0.00 0.00 0.00 2.66
410 411 4.954202 TCGAGGAGGCAAGAGATAAAAGTA 59.046 41.667 0.00 0.00 0.00 2.24
411 412 5.421056 TCGAGGAGGCAAGAGATAAAAGTAA 59.579 40.000 0.00 0.00 0.00 2.24
412 413 6.070995 TCGAGGAGGCAAGAGATAAAAGTAAA 60.071 38.462 0.00 0.00 0.00 2.01
413 414 6.594159 CGAGGAGGCAAGAGATAAAAGTAAAA 59.406 38.462 0.00 0.00 0.00 1.52
414 415 7.119262 CGAGGAGGCAAGAGATAAAAGTAAAAA 59.881 37.037 0.00 0.00 0.00 1.94
439 440 9.643693 AAATAAAATGCCAACAGTCTTTAGATG 57.356 29.630 0.00 0.00 0.00 2.90
440 441 6.899393 AAAATGCCAACAGTCTTTAGATGA 57.101 33.333 0.00 0.00 0.00 2.92
441 442 6.899393 AAATGCCAACAGTCTTTAGATGAA 57.101 33.333 0.00 0.00 0.00 2.57
442 443 5.886960 ATGCCAACAGTCTTTAGATGAAC 57.113 39.130 0.00 0.00 0.00 3.18
443 444 4.072131 TGCCAACAGTCTTTAGATGAACC 58.928 43.478 0.00 0.00 0.00 3.62
444 445 3.440522 GCCAACAGTCTTTAGATGAACCC 59.559 47.826 0.00 0.00 0.00 4.11
445 446 4.651778 CCAACAGTCTTTAGATGAACCCA 58.348 43.478 0.00 0.00 0.00 4.51
446 447 5.256474 CCAACAGTCTTTAGATGAACCCAT 58.744 41.667 0.00 0.00 35.29 4.00
447 448 5.711976 CCAACAGTCTTTAGATGAACCCATT 59.288 40.000 0.00 0.00 32.09 3.16
448 449 6.209391 CCAACAGTCTTTAGATGAACCCATTT 59.791 38.462 0.00 0.00 32.09 2.32
449 450 7.393234 CCAACAGTCTTTAGATGAACCCATTTA 59.607 37.037 0.00 0.00 32.09 1.40
472 473 5.482163 TGGATGTGATGTACAAGTCTTGA 57.518 39.130 19.53 0.00 43.77 3.02
525 526 5.437289 TTTTACATGGTCAGACAAAGCAG 57.563 39.130 2.17 0.00 0.00 4.24
527 528 0.524862 CATGGTCAGACAAAGCAGCC 59.475 55.000 2.17 0.00 0.00 4.85
529 530 1.055849 TGGTCAGACAAAGCAGCCTA 58.944 50.000 2.17 0.00 0.00 3.93
544 545 2.238646 CAGCCTACATCCCCACTTTGTA 59.761 50.000 0.00 0.00 0.00 2.41
572 573 3.684305 TGTGTGGTTTCTAGCATCGATTG 59.316 43.478 0.00 0.00 33.75 2.67
585 586 2.961522 TCGATTGGCAACTCGTTTTC 57.038 45.000 22.19 7.91 36.33 2.29
643 644 7.704472 TGGAAAGAATGTCACATGTTGTAAAAC 59.296 33.333 0.00 0.00 0.00 2.43
713 714 6.083630 CAGTCAATGGTATTAAAACACACCG 58.916 40.000 0.00 0.00 33.55 4.94
722 750 7.662258 TGGTATTAAAACACACCGGGATATATG 59.338 37.037 6.32 0.00 33.55 1.78
837 888 1.070376 CAACTCATGTGTGCACTCACG 60.070 52.381 22.79 15.79 46.01 4.35
940 1031 6.745794 AAACCATTTCCCCATATACCATTG 57.254 37.500 0.00 0.00 0.00 2.82
966 1057 1.066143 TGCCGAGAAAGATCTTGTCCC 60.066 52.381 9.17 3.23 35.54 4.46
985 1080 2.047655 CGCCAACTCCGCTAACCA 60.048 61.111 0.00 0.00 0.00 3.67
992 1087 3.306502 CCAACTCCGCTAACCAGTTAAGA 60.307 47.826 0.00 0.00 0.00 2.10
997 1092 5.007385 TCCGCTAACCAGTTAAGAAGATC 57.993 43.478 0.00 0.00 0.00 2.75
1299 1394 3.343421 GGGAACACGCACACGGAC 61.343 66.667 0.00 0.00 46.04 4.79
1546 1641 4.367023 GGCCGTACGAGCACCACA 62.367 66.667 18.76 0.00 0.00 4.17
1779 1874 0.163788 CGTTCGCATGCTTCGACTTT 59.836 50.000 17.13 0.00 35.51 2.66
1835 1951 1.262950 TCTTTTTCGTGGCATGTGACG 59.737 47.619 6.60 11.16 36.91 4.35
1863 1979 6.519679 TGGATTTGACAATCTGAATTCCAG 57.480 37.500 2.27 0.98 44.27 3.86
1945 2061 3.049912 GCGTCCCTTCAAAACAAATCAC 58.950 45.455 0.00 0.00 0.00 3.06
1947 2063 4.023536 GCGTCCCTTCAAAACAAATCACTA 60.024 41.667 0.00 0.00 0.00 2.74
1948 2064 5.449304 CGTCCCTTCAAAACAAATCACTAC 58.551 41.667 0.00 0.00 0.00 2.73
1950 2066 6.206498 GTCCCTTCAAAACAAATCACTACAC 58.794 40.000 0.00 0.00 0.00 2.90
1954 2070 8.023128 CCCTTCAAAACAAATCACTACACATAG 58.977 37.037 0.00 0.00 34.25 2.23
1987 2175 9.444600 TTTTCTGTTCCTACTGATTTGTATACC 57.555 33.333 0.00 0.00 33.04 2.73
1988 2176 7.973048 TCTGTTCCTACTGATTTGTATACCT 57.027 36.000 0.00 0.00 0.00 3.08
1989 2177 7.782049 TCTGTTCCTACTGATTTGTATACCTG 58.218 38.462 0.00 0.00 0.00 4.00
1990 2178 6.884832 TGTTCCTACTGATTTGTATACCTGG 58.115 40.000 0.00 0.00 0.00 4.45
1991 2179 6.126883 TGTTCCTACTGATTTGTATACCTGGG 60.127 42.308 0.00 0.00 0.00 4.45
1992 2180 5.784023 TCCTACTGATTTGTATACCTGGGA 58.216 41.667 0.00 0.00 0.00 4.37
1993 2181 6.206787 TCCTACTGATTTGTATACCTGGGAA 58.793 40.000 0.00 0.00 0.00 3.97
1994 2182 6.674861 TCCTACTGATTTGTATACCTGGGAAA 59.325 38.462 0.00 0.00 0.00 3.13
1996 2184 7.832187 CCTACTGATTTGTATACCTGGGAAAAA 59.168 37.037 0.00 0.00 0.00 1.94
2021 2669 8.922058 AAAATGCAAGATCAATTGTGACTATC 57.078 30.769 5.13 0.69 36.31 2.08
2027 2675 5.595885 AGATCAATTGTGACTATCTGGTCG 58.404 41.667 5.13 0.00 38.91 4.79
2030 2678 5.592054 TCAATTGTGACTATCTGGTCGATC 58.408 41.667 5.13 0.00 38.91 3.69
2039 2687 0.321346 TCTGGTCGATCTTGCTTGCA 59.679 50.000 0.00 0.00 0.00 4.08
2043 2691 2.279741 GGTCGATCTTGCTTGCATGTA 58.720 47.619 8.07 0.00 0.00 2.29
2044 2692 2.874701 GGTCGATCTTGCTTGCATGTAT 59.125 45.455 8.07 2.23 0.00 2.29
2055 2731 5.708948 TGCTTGCATGTATTTAGTGGAAAC 58.291 37.500 1.14 0.00 0.00 2.78
2113 2789 5.163703 GGTGCACCATGACAACGAAATATTA 60.164 40.000 31.23 0.00 35.64 0.98
2119 2795 8.064222 CACCATGACAACGAAATATTATGACTC 58.936 37.037 0.00 0.00 0.00 3.36
2313 3092 1.935933 ACGACGCTGTTTTCTTGAGT 58.064 45.000 0.00 0.00 0.00 3.41
2574 3404 2.581354 GAGCGTGAGGATGCTGGT 59.419 61.111 0.00 0.00 44.95 4.00
2622 3452 0.739462 CATCGCTTGCGTTCTGGGTA 60.739 55.000 14.70 0.00 0.00 3.69
2646 3476 5.755409 AAGAGTATGTTGGGTATGACACA 57.245 39.130 0.00 0.00 0.00 3.72
2712 3542 4.403432 AGGCTTGTCCATAATCCAAATGTG 59.597 41.667 0.00 0.00 37.29 3.21
2786 3616 7.341769 CCTAATTTTCCCATCAGTTACCATGAA 59.658 37.037 0.00 0.00 0.00 2.57
2788 3618 3.931907 TCCCATCAGTTACCATGAAGG 57.068 47.619 0.00 0.00 45.67 3.46
2899 3732 7.994425 TTTGTGACTAGGCTTTTGAATGATA 57.006 32.000 0.00 0.00 0.00 2.15
2907 3740 6.530019 AGGCTTTTGAATGATATTTTCGGT 57.470 33.333 0.00 0.00 0.00 4.69
3029 3862 9.014297 CCTTGAGGTATCACAAACTTTAGAATT 57.986 33.333 0.00 0.00 34.35 2.17
3030 3863 9.831737 CTTGAGGTATCACAAACTTTAGAATTG 57.168 33.333 0.00 0.00 34.35 2.32
3066 3909 8.315482 TGCTTGTTTCAGTACATGGTACTAATA 58.685 33.333 8.58 0.00 0.00 0.98
3298 4144 1.561542 ACCACATCATGAGGGAGGAAC 59.438 52.381 22.62 0.00 32.05 3.62
3379 4225 1.507141 GGATAAGCCCGCGGTCAATG 61.507 60.000 26.12 9.44 0.00 2.82
3405 4251 5.907866 AGAAGTTCCAGAGCTACTTAGAC 57.092 43.478 0.00 0.00 32.58 2.59
3414 4260 3.056465 AGAGCTACTTAGACAGTGCCAAC 60.056 47.826 0.00 0.00 35.97 3.77
3448 4294 4.836175 TCTCCATGCCGGACATTAGTAATA 59.164 41.667 5.05 0.00 39.64 0.98
3623 4493 8.085296 ACCGCAATCAAAAATAAATGTGTAAGA 58.915 29.630 0.00 0.00 0.00 2.10
3625 4495 9.941991 CGCAATCAAAAATAAATGTGTAAGAAG 57.058 29.630 0.00 0.00 0.00 2.85
3800 4698 8.797350 ACAGAACATTATGATCAGATTGTTCA 57.203 30.769 35.60 9.47 41.50 3.18
3804 4702 9.459640 GAACATTATGATCAGATTGTTCATTGG 57.540 33.333 32.70 9.39 40.10 3.16
3805 4703 7.948357 ACATTATGATCAGATTGTTCATTGGG 58.052 34.615 11.14 2.47 37.77 4.12
3806 4704 6.964807 TTATGATCAGATTGTTCATTGGGG 57.035 37.500 0.09 0.00 37.77 4.96
3807 4705 4.320546 TGATCAGATTGTTCATTGGGGT 57.679 40.909 0.00 0.00 0.00 4.95
3808 4706 4.676109 TGATCAGATTGTTCATTGGGGTT 58.324 39.130 0.00 0.00 0.00 4.11
3809 4707 5.085920 TGATCAGATTGTTCATTGGGGTTT 58.914 37.500 0.00 0.00 0.00 3.27
3825 4723 8.938906 CATTGGGGTTTATTGAATCTTTTGAAG 58.061 33.333 0.00 0.00 0.00 3.02
3826 4724 7.847711 TGGGGTTTATTGAATCTTTTGAAGA 57.152 32.000 0.00 0.00 42.69 2.87
3864 4762 4.392921 TGAGTAGCTTTGTATGCTCTCC 57.607 45.455 0.00 0.00 41.46 3.71
3869 4767 2.139118 GCTTTGTATGCTCTCCGATCC 58.861 52.381 0.00 0.00 0.00 3.36
3870 4768 2.483714 GCTTTGTATGCTCTCCGATCCA 60.484 50.000 0.00 0.00 0.00 3.41
3879 4777 2.869192 GCTCTCCGATCCATTTGTCTTC 59.131 50.000 0.00 0.00 0.00 2.87
3889 4787 3.903090 TCCATTTGTCTTCTTTGGCCAAT 59.097 39.130 21.26 0.00 0.00 3.16
3890 4788 5.083122 TCCATTTGTCTTCTTTGGCCAATA 58.917 37.500 21.26 8.09 0.00 1.90
3892 4790 6.213195 TCCATTTGTCTTCTTTGGCCAATATT 59.787 34.615 21.26 0.00 0.00 1.28
3899 4797 6.041296 GTCTTCTTTGGCCAATATTGATGGAT 59.959 38.462 21.26 0.00 40.56 3.41
3905 4803 5.951204 TGGCCAATATTGATGGATAGTTCA 58.049 37.500 17.23 0.00 40.56 3.18
3916 4814 6.385443 TGATGGATAGTTCATTAGAGGGAGT 58.615 40.000 0.00 0.00 0.00 3.85
3917 4815 6.268617 TGATGGATAGTTCATTAGAGGGAGTG 59.731 42.308 0.00 0.00 0.00 3.51
3924 4822 3.653164 TCATTAGAGGGAGTGGTGCATA 58.347 45.455 0.00 0.00 0.00 3.14
3928 4826 2.672098 AGAGGGAGTGGTGCATAGTAG 58.328 52.381 0.00 0.00 0.00 2.57
3936 4834 2.027561 GTGGTGCATAGTAGTGGGTTCA 60.028 50.000 0.00 0.00 0.00 3.18
3938 4836 3.265737 TGGTGCATAGTAGTGGGTTCAAT 59.734 43.478 0.00 0.00 0.00 2.57
3940 4838 4.513442 GTGCATAGTAGTGGGTTCAATCA 58.487 43.478 0.00 0.00 0.00 2.57
3943 4841 4.023707 GCATAGTAGTGGGTTCAATCATGC 60.024 45.833 0.00 0.00 0.00 4.06
3956 4856 1.516161 ATCATGCGGTGATTCATCCG 58.484 50.000 17.77 17.77 45.25 4.18
3964 4864 2.972625 GGTGATTCATCCGAGTGACAA 58.027 47.619 0.00 0.00 0.00 3.18
3972 4872 3.146066 CATCCGAGTGACAAAAAGGGAA 58.854 45.455 0.00 0.00 0.00 3.97
3973 4873 3.502123 TCCGAGTGACAAAAAGGGAAT 57.498 42.857 0.00 0.00 0.00 3.01
3974 4874 3.146066 TCCGAGTGACAAAAAGGGAATG 58.854 45.455 0.00 0.00 0.00 2.67
3975 4875 3.146066 CCGAGTGACAAAAAGGGAATGA 58.854 45.455 0.00 0.00 0.00 2.57
3990 4890 7.696992 AAGGGAATGAACACGTATTGTATTT 57.303 32.000 0.00 0.00 37.51 1.40
3992 4892 7.535139 AGGGAATGAACACGTATTGTATTTTG 58.465 34.615 0.00 0.00 37.51 2.44
3995 4895 5.049398 TGAACACGTATTGTATTTTGGCC 57.951 39.130 0.00 0.00 37.51 5.36
4031 4931 9.696917 AAAATGATGGTTTCTTTATCACACTTC 57.303 29.630 0.00 0.00 34.04 3.01
4032 4932 8.641498 AATGATGGTTTCTTTATCACACTTCT 57.359 30.769 0.00 0.00 34.04 2.85
4036 4936 7.921786 TGGTTTCTTTATCACACTTCTATGG 57.078 36.000 0.00 0.00 0.00 2.74
4088 4988 3.615496 GCTTATTGCAATGCTCTGTTTGG 59.385 43.478 22.27 1.46 42.31 3.28
4089 4989 4.813027 CTTATTGCAATGCTCTGTTTGGT 58.187 39.130 22.27 0.00 0.00 3.67
4092 4992 7.637631 TTATTGCAATGCTCTGTTTGGTATA 57.362 32.000 22.27 0.00 0.00 1.47
4128 5028 2.833943 AGATGCATGATGGATAGCGGTA 59.166 45.455 2.46 0.00 0.00 4.02
4151 5314 4.748277 TGGGTGGAGTATTAGTTGTAGC 57.252 45.455 0.00 0.00 0.00 3.58
4165 5328 4.003648 AGTTGTAGCTGCAGTTGGATAAC 58.996 43.478 16.64 9.90 37.06 1.89
4169 5332 1.165270 GCTGCAGTTGGATAACGGTT 58.835 50.000 16.64 0.00 41.71 4.44
4179 5342 7.041372 GCAGTTGGATAACGGTTTACATATCAT 60.041 37.037 0.00 0.00 41.71 2.45
4180 5343 8.836413 CAGTTGGATAACGGTTTACATATCATT 58.164 33.333 0.00 0.00 41.71 2.57
4186 5737 4.714632 ACGGTTTACATATCATTGAGGGG 58.285 43.478 0.00 0.00 0.00 4.79
4190 5741 7.165485 CGGTTTACATATCATTGAGGGGAATA 58.835 38.462 0.00 0.00 0.00 1.75
4191 5742 7.119262 CGGTTTACATATCATTGAGGGGAATAC 59.881 40.741 0.00 0.00 0.00 1.89
4198 5749 9.745018 CATATCATTGAGGGGAATACTTATTGT 57.255 33.333 0.00 0.00 0.00 2.71
4259 5810 3.533606 TCTTATGAGAGAGCAAGCACC 57.466 47.619 0.00 0.00 0.00 5.01
4260 5811 3.102972 TCTTATGAGAGAGCAAGCACCT 58.897 45.455 0.00 0.00 0.00 4.00
4261 5812 2.975732 TATGAGAGAGCAAGCACCTG 57.024 50.000 0.00 0.00 0.00 4.00
4262 5813 0.392729 ATGAGAGAGCAAGCACCTGC 60.393 55.000 0.00 0.00 42.97 4.85
4263 5814 1.744741 GAGAGAGCAAGCACCTGCC 60.745 63.158 2.21 0.00 43.73 4.85
4264 5815 2.033141 GAGAGCAAGCACCTGCCA 59.967 61.111 2.21 0.00 43.73 4.92
4265 5816 1.601759 GAGAGCAAGCACCTGCCAA 60.602 57.895 2.21 0.00 43.73 4.52
4266 5817 1.584380 GAGAGCAAGCACCTGCCAAG 61.584 60.000 2.21 0.00 43.73 3.61
4267 5818 3.278592 GAGCAAGCACCTGCCAAGC 62.279 63.158 2.21 0.00 43.73 4.01
4268 5819 4.368543 GCAAGCACCTGCCAAGCC 62.369 66.667 0.00 0.00 43.38 4.35
4269 5820 4.047059 CAAGCACCTGCCAAGCCG 62.047 66.667 0.00 0.00 43.38 5.52
4322 5873 4.935495 CCGATGGTGATGGCGGGG 62.935 72.222 0.00 0.00 40.08 5.73
4324 5875 4.504596 GATGGTGATGGCGGGGCA 62.505 66.667 0.00 0.00 0.00 5.36
4325 5876 4.820744 ATGGTGATGGCGGGGCAC 62.821 66.667 0.00 0.00 0.00 5.01
4327 5878 4.740822 GGTGATGGCGGGGCACTT 62.741 66.667 0.00 0.00 33.25 3.16
4328 5879 3.134127 GTGATGGCGGGGCACTTC 61.134 66.667 0.00 0.00 0.00 3.01
4329 5880 4.424711 TGATGGCGGGGCACTTCC 62.425 66.667 0.00 0.00 0.00 3.46
4330 5881 4.115199 GATGGCGGGGCACTTCCT 62.115 66.667 0.00 0.00 34.39 3.36
4331 5882 3.645268 GATGGCGGGGCACTTCCTT 62.645 63.158 0.00 0.00 34.39 3.36
4332 5883 3.944250 ATGGCGGGGCACTTCCTTG 62.944 63.158 0.00 0.00 34.39 3.61
4335 5886 3.058160 CGGGGCACTTCCTTGCAG 61.058 66.667 0.00 0.00 44.94 4.41
4336 5887 3.376918 GGGGCACTTCCTTGCAGC 61.377 66.667 0.00 0.00 44.94 5.25
4337 5888 2.282745 GGGCACTTCCTTGCAGCT 60.283 61.111 0.00 0.00 44.94 4.24
4338 5889 2.633509 GGGCACTTCCTTGCAGCTG 61.634 63.158 10.11 10.11 44.94 4.24
4339 5890 2.257676 GCACTTCCTTGCAGCTGC 59.742 61.111 31.89 31.89 42.49 5.25
4340 5891 2.266627 GCACTTCCTTGCAGCTGCT 61.267 57.895 36.61 14.44 42.49 4.24
4341 5892 1.803366 GCACTTCCTTGCAGCTGCTT 61.803 55.000 36.61 11.39 42.49 3.91
4342 5893 0.240411 CACTTCCTTGCAGCTGCTTC 59.760 55.000 36.61 11.58 42.66 3.86
4343 5894 1.233285 ACTTCCTTGCAGCTGCTTCG 61.233 55.000 36.61 23.88 42.66 3.79
4344 5895 0.952497 CTTCCTTGCAGCTGCTTCGA 60.952 55.000 36.61 25.05 42.66 3.71
4345 5896 0.321919 TTCCTTGCAGCTGCTTCGAT 60.322 50.000 36.61 0.00 42.66 3.59
4346 5897 0.742281 TCCTTGCAGCTGCTTCGATC 60.742 55.000 36.61 9.26 42.66 3.69
4347 5898 0.743701 CCTTGCAGCTGCTTCGATCT 60.744 55.000 36.61 0.00 42.66 2.75
4348 5899 0.374063 CTTGCAGCTGCTTCGATCTG 59.626 55.000 36.61 14.88 42.66 2.90
4349 5900 1.022982 TTGCAGCTGCTTCGATCTGG 61.023 55.000 36.61 0.00 42.66 3.86
4350 5901 2.178890 GCAGCTGCTTCGATCTGGG 61.179 63.158 31.33 0.00 38.21 4.45
4351 5902 1.523258 CAGCTGCTTCGATCTGGGG 60.523 63.158 0.00 0.00 0.00 4.96
4352 5903 2.203126 GCTGCTTCGATCTGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
4353 5904 2.203126 CTGCTTCGATCTGGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
4354 5905 3.764160 CTGCTTCGATCTGGGGGCC 62.764 68.421 0.00 0.00 0.00 5.80
4355 5906 4.570874 GCTTCGATCTGGGGGCCC 62.571 72.222 15.76 15.76 0.00 5.80
4356 5907 2.770048 CTTCGATCTGGGGGCCCT 60.770 66.667 24.38 0.78 36.94 5.19
4357 5908 3.089874 TTCGATCTGGGGGCCCTG 61.090 66.667 24.38 15.97 36.94 4.45
4370 5921 4.778143 CCCTGGCTCCCCGTTTCG 62.778 72.222 0.00 0.00 0.00 3.46
4372 5923 4.016706 CTGGCTCCCCGTTTCGGT 62.017 66.667 7.40 0.00 46.80 4.69
4373 5924 2.604079 TGGCTCCCCGTTTCGGTA 60.604 61.111 7.40 0.00 46.80 4.02
4374 5925 2.186125 GGCTCCCCGTTTCGGTAG 59.814 66.667 7.40 5.63 46.80 3.18
4375 5926 2.510918 GCTCCCCGTTTCGGTAGC 60.511 66.667 13.80 13.80 46.80 3.58
4376 5927 2.975536 CTCCCCGTTTCGGTAGCA 59.024 61.111 7.40 0.00 46.80 3.49
4377 5928 1.294138 CTCCCCGTTTCGGTAGCAA 59.706 57.895 7.40 0.00 46.80 3.91
4378 5929 0.107848 CTCCCCGTTTCGGTAGCAAT 60.108 55.000 7.40 0.00 46.80 3.56
4379 5930 0.325602 TCCCCGTTTCGGTAGCAATT 59.674 50.000 7.40 0.00 46.80 2.32
4380 5931 0.450184 CCCCGTTTCGGTAGCAATTG 59.550 55.000 0.00 0.00 46.80 2.32
4381 5932 0.179174 CCCGTTTCGGTAGCAATTGC 60.179 55.000 23.05 23.05 46.80 3.56
4382 5933 0.519519 CCGTTTCGGTAGCAATTGCA 59.480 50.000 30.89 14.94 42.73 4.08
4383 5934 1.465689 CCGTTTCGGTAGCAATTGCAG 60.466 52.381 30.89 18.54 42.73 4.41
4384 5935 1.463056 CGTTTCGGTAGCAATTGCAGA 59.537 47.619 30.89 20.34 45.16 4.26
4385 5936 2.095969 CGTTTCGGTAGCAATTGCAGAA 60.096 45.455 30.89 24.13 45.16 3.02
4386 5937 3.608241 CGTTTCGGTAGCAATTGCAGAAA 60.608 43.478 30.89 27.41 45.16 2.52
4387 5938 3.829886 TTCGGTAGCAATTGCAGAAAG 57.170 42.857 30.89 17.56 45.16 2.62
4388 5939 1.468520 TCGGTAGCAATTGCAGAAAGC 59.531 47.619 30.89 19.92 45.16 3.51
4389 5940 1.468054 CGGTAGCAATTGCAGAAAGCC 60.468 52.381 30.89 19.82 44.83 4.35
4390 5941 1.821136 GGTAGCAATTGCAGAAAGCCT 59.179 47.619 30.89 11.19 44.83 4.58
4391 5942 2.416431 GGTAGCAATTGCAGAAAGCCTG 60.416 50.000 30.89 0.00 44.83 4.85
4392 5943 1.335145 AGCAATTGCAGAAAGCCTGT 58.665 45.000 30.89 4.40 44.71 4.00
4393 5944 1.690352 AGCAATTGCAGAAAGCCTGTT 59.310 42.857 30.89 3.86 44.71 3.16
4394 5945 2.103601 AGCAATTGCAGAAAGCCTGTTT 59.896 40.909 30.89 3.64 44.71 2.83
4395 5946 2.222445 GCAATTGCAGAAAGCCTGTTTG 59.778 45.455 25.36 0.00 44.71 2.93
4396 5947 2.159327 ATTGCAGAAAGCCTGTTTGC 57.841 45.000 0.00 0.00 44.71 3.68
4397 5948 0.248990 TTGCAGAAAGCCTGTTTGCG 60.249 50.000 0.00 0.00 44.71 4.85
4398 5949 1.372128 GCAGAAAGCCTGTTTGCGG 60.372 57.895 0.00 0.00 44.71 5.69
4399 5950 2.032981 CAGAAAGCCTGTTTGCGGT 58.967 52.632 0.00 0.00 38.10 5.68
4400 5951 0.385390 CAGAAAGCCTGTTTGCGGTT 59.615 50.000 0.00 0.00 38.10 4.44
4401 5952 0.385390 AGAAAGCCTGTTTGCGGTTG 59.615 50.000 0.00 0.00 36.02 3.77
4402 5953 1.215014 GAAAGCCTGTTTGCGGTTGC 61.215 55.000 0.00 0.00 43.20 4.17
4414 5965 0.514691 GCGGTTGCAGCATCTATAGC 59.485 55.000 2.05 0.00 42.15 2.97
4415 5966 1.869774 CGGTTGCAGCATCTATAGCA 58.130 50.000 2.05 0.00 34.79 3.49
4416 5967 2.212652 CGGTTGCAGCATCTATAGCAA 58.787 47.619 2.05 0.00 43.90 3.91
4419 5970 3.909776 TTGCAGCATCTATAGCAATGC 57.090 42.857 15.36 15.36 46.84 3.56
4440 5991 9.740239 CAATGCATGCTAGTACTCAATTTATTT 57.260 29.630 20.33 0.00 0.00 1.40
4441 5992 9.740239 AATGCATGCTAGTACTCAATTTATTTG 57.260 29.630 20.33 0.00 36.61 2.32
4442 5993 7.706159 TGCATGCTAGTACTCAATTTATTTGG 58.294 34.615 20.33 0.00 35.92 3.28
4443 5994 6.638468 GCATGCTAGTACTCAATTTATTTGGC 59.362 38.462 11.37 0.00 35.92 4.52
4444 5995 6.358118 TGCTAGTACTCAATTTATTTGGCG 57.642 37.500 0.00 0.00 35.92 5.69
4445 5996 5.295787 TGCTAGTACTCAATTTATTTGGCGG 59.704 40.000 0.00 0.00 35.92 6.13
4446 5997 4.632538 AGTACTCAATTTATTTGGCGGC 57.367 40.909 0.00 0.00 35.92 6.53
4447 5998 2.559998 ACTCAATTTATTTGGCGGCG 57.440 45.000 0.51 0.51 35.92 6.46
4448 5999 1.199624 CTCAATTTATTTGGCGGCGC 58.800 50.000 26.17 26.17 35.92 6.53
4449 6000 0.524392 TCAATTTATTTGGCGGCGCG 60.524 50.000 26.95 0.00 35.92 6.86
4450 6001 0.800300 CAATTTATTTGGCGGCGCGT 60.800 50.000 26.95 13.94 0.00 6.01
4451 6002 0.800300 AATTTATTTGGCGGCGCGTG 60.800 50.000 26.95 1.25 0.00 5.34
4452 6003 1.649390 ATTTATTTGGCGGCGCGTGA 61.649 50.000 26.95 13.97 0.00 4.35
4453 6004 1.649390 TTTATTTGGCGGCGCGTGAT 61.649 50.000 26.95 19.87 0.00 3.06
4454 6005 2.316361 TTATTTGGCGGCGCGTGATG 62.316 55.000 26.95 0.00 0.00 3.07
4462 6013 3.047280 GCGCGTGATGTCCCACAA 61.047 61.111 8.43 0.00 36.89 3.33
4463 6014 3.027170 GCGCGTGATGTCCCACAAG 62.027 63.158 8.43 0.00 36.89 3.16
4464 6015 1.667830 CGCGTGATGTCCCACAAGT 60.668 57.895 0.00 0.00 36.89 3.16
4465 6016 0.389296 CGCGTGATGTCCCACAAGTA 60.389 55.000 0.00 0.00 36.89 2.24
4466 6017 1.739035 CGCGTGATGTCCCACAAGTAT 60.739 52.381 0.00 0.00 36.89 2.12
4467 6018 2.480587 CGCGTGATGTCCCACAAGTATA 60.481 50.000 0.00 0.00 36.89 1.47
4468 6019 3.123804 GCGTGATGTCCCACAAGTATAG 58.876 50.000 0.00 0.00 36.89 1.31
4469 6020 3.717707 CGTGATGTCCCACAAGTATAGG 58.282 50.000 0.00 0.00 36.89 2.57
4470 6021 3.492656 CGTGATGTCCCACAAGTATAGGG 60.493 52.174 0.00 0.00 44.22 3.53
4471 6022 3.045634 TGATGTCCCACAAGTATAGGGG 58.954 50.000 0.00 0.00 43.03 4.79
4475 6026 3.717507 TCCCACAAGTATAGGGGATCA 57.282 47.619 0.00 0.00 44.54 2.92
4476 6027 4.015617 TCCCACAAGTATAGGGGATCAA 57.984 45.455 0.00 0.00 44.54 2.57
4477 6028 4.577096 TCCCACAAGTATAGGGGATCAAT 58.423 43.478 0.00 0.00 44.54 2.57
4478 6029 4.597507 TCCCACAAGTATAGGGGATCAATC 59.402 45.833 0.00 0.00 44.54 2.67
4479 6030 4.350816 CCCACAAGTATAGGGGATCAATCA 59.649 45.833 0.00 0.00 43.57 2.57
4480 6031 5.014544 CCCACAAGTATAGGGGATCAATCAT 59.985 44.000 0.00 0.00 43.57 2.45
4481 6032 6.215431 CCCACAAGTATAGGGGATCAATCATA 59.785 42.308 0.00 0.00 43.57 2.15
4482 6033 7.334090 CCACAAGTATAGGGGATCAATCATAG 58.666 42.308 0.00 0.00 0.00 2.23
4483 6034 7.038017 CCACAAGTATAGGGGATCAATCATAGT 60.038 40.741 0.00 0.00 0.00 2.12
4484 6035 8.037758 CACAAGTATAGGGGATCAATCATAGTC 58.962 40.741 0.00 0.00 0.00 2.59
4485 6036 7.958583 ACAAGTATAGGGGATCAATCATAGTCT 59.041 37.037 0.00 0.00 0.00 3.24
4486 6037 8.820831 CAAGTATAGGGGATCAATCATAGTCTT 58.179 37.037 0.00 0.00 0.00 3.01
4487 6038 8.980832 AGTATAGGGGATCAATCATAGTCTTT 57.019 34.615 0.00 0.00 0.00 2.52
4488 6039 9.398921 AGTATAGGGGATCAATCATAGTCTTTT 57.601 33.333 0.00 0.00 0.00 2.27
4489 6040 9.442047 GTATAGGGGATCAATCATAGTCTTTTG 57.558 37.037 0.00 0.00 0.00 2.44
4490 6041 6.581388 AGGGGATCAATCATAGTCTTTTGA 57.419 37.500 0.00 0.00 33.06 2.69
4491 6042 7.159201 AGGGGATCAATCATAGTCTTTTGAT 57.841 36.000 0.00 0.00 40.51 2.57
4492 6043 8.280258 AGGGGATCAATCATAGTCTTTTGATA 57.720 34.615 0.00 0.00 38.55 2.15
4493 6044 8.727149 AGGGGATCAATCATAGTCTTTTGATAA 58.273 33.333 0.00 0.00 38.55 1.75
4494 6045 9.007901 GGGGATCAATCATAGTCTTTTGATAAG 57.992 37.037 0.00 0.00 38.55 1.73
4495 6046 9.566432 GGGATCAATCATAGTCTTTTGATAAGT 57.434 33.333 0.00 0.00 38.55 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.405278 TCGGCTCTTCATATCTTCACAATA 57.595 37.500 0.00 0.00 0.00 1.90
2 3 5.282055 TCGGCTCTTCATATCTTCACAAT 57.718 39.130 0.00 0.00 0.00 2.71
3 4 4.686972 CTCGGCTCTTCATATCTTCACAA 58.313 43.478 0.00 0.00 0.00 3.33
4 5 3.491619 GCTCGGCTCTTCATATCTTCACA 60.492 47.826 0.00 0.00 0.00 3.58
6 7 2.961741 AGCTCGGCTCTTCATATCTTCA 59.038 45.455 0.00 0.00 30.62 3.02
7 8 3.658757 AGCTCGGCTCTTCATATCTTC 57.341 47.619 0.00 0.00 30.62 2.87
9 10 4.085733 ACATAGCTCGGCTCTTCATATCT 58.914 43.478 1.46 0.00 40.44 1.98
12 13 3.636764 TCAACATAGCTCGGCTCTTCATA 59.363 43.478 1.46 0.00 40.44 2.15
13 14 2.432146 TCAACATAGCTCGGCTCTTCAT 59.568 45.455 1.46 0.00 40.44 2.57
14 15 1.824852 TCAACATAGCTCGGCTCTTCA 59.175 47.619 1.46 0.00 40.44 3.02
15 16 2.586258 TCAACATAGCTCGGCTCTTC 57.414 50.000 1.46 0.00 40.44 2.87
16 17 2.544694 CGATCAACATAGCTCGGCTCTT 60.545 50.000 1.46 0.00 40.44 2.85
17 18 1.000827 CGATCAACATAGCTCGGCTCT 60.001 52.381 1.46 0.00 40.44 4.09
18 19 1.413382 CGATCAACATAGCTCGGCTC 58.587 55.000 1.46 0.00 40.44 4.70
19 20 0.032678 CCGATCAACATAGCTCGGCT 59.967 55.000 0.00 3.87 43.51 5.52
20 21 2.522060 CCGATCAACATAGCTCGGC 58.478 57.895 0.00 0.00 43.51 5.54
22 23 1.570813 TTGCCGATCAACATAGCTCG 58.429 50.000 0.00 0.00 0.00 5.03
23 24 2.874701 ACATTGCCGATCAACATAGCTC 59.125 45.455 0.00 0.00 37.53 4.09
24 25 2.923121 ACATTGCCGATCAACATAGCT 58.077 42.857 0.00 0.00 37.53 3.32
25 26 3.698029 AACATTGCCGATCAACATAGC 57.302 42.857 0.00 0.00 37.53 2.97
26 27 5.490139 AGAAACATTGCCGATCAACATAG 57.510 39.130 0.00 0.00 37.53 2.23
27 28 4.335315 GGAGAAACATTGCCGATCAACATA 59.665 41.667 0.00 0.00 37.53 2.29
28 29 3.129287 GGAGAAACATTGCCGATCAACAT 59.871 43.478 0.00 0.00 37.53 2.71
29 30 2.487762 GGAGAAACATTGCCGATCAACA 59.512 45.455 0.00 0.00 37.53 3.33
30 31 2.487762 TGGAGAAACATTGCCGATCAAC 59.512 45.455 0.00 0.00 37.53 3.18
31 32 2.789213 TGGAGAAACATTGCCGATCAA 58.211 42.857 0.00 0.00 39.32 2.57
32 33 2.488204 TGGAGAAACATTGCCGATCA 57.512 45.000 0.00 0.00 0.00 2.92
33 34 6.992063 ATATATGGAGAAACATTGCCGATC 57.008 37.500 0.00 0.00 32.39 3.69
34 35 8.896744 CAATATATATGGAGAAACATTGCCGAT 58.103 33.333 0.00 0.00 32.39 4.18
35 36 8.100164 TCAATATATATGGAGAAACATTGCCGA 58.900 33.333 0.00 0.00 32.39 5.54
36 37 8.267620 TCAATATATATGGAGAAACATTGCCG 57.732 34.615 0.00 0.00 32.39 5.69
59 60 9.487790 GGGATTAATTGTTTTCATCTTGTTTCA 57.512 29.630 0.00 0.00 0.00 2.69
60 61 9.710900 AGGGATTAATTGTTTTCATCTTGTTTC 57.289 29.630 0.00 0.00 0.00 2.78
61 62 9.710900 GAGGGATTAATTGTTTTCATCTTGTTT 57.289 29.630 0.00 0.00 0.00 2.83
62 63 9.093458 AGAGGGATTAATTGTTTTCATCTTGTT 57.907 29.630 0.00 0.00 0.00 2.83
63 64 8.526147 CAGAGGGATTAATTGTTTTCATCTTGT 58.474 33.333 0.00 0.00 0.00 3.16
64 65 8.526147 ACAGAGGGATTAATTGTTTTCATCTTG 58.474 33.333 0.00 0.00 0.00 3.02
65 66 8.655935 ACAGAGGGATTAATTGTTTTCATCTT 57.344 30.769 0.00 0.00 0.00 2.40
66 67 8.655935 AACAGAGGGATTAATTGTTTTCATCT 57.344 30.769 0.00 0.00 0.00 2.90
67 68 9.710900 AAAACAGAGGGATTAATTGTTTTCATC 57.289 29.630 16.69 0.00 44.21 2.92
69 70 9.323985 CAAAAACAGAGGGATTAATTGTTTTCA 57.676 29.630 20.25 0.00 45.76 2.69
70 71 9.325198 ACAAAAACAGAGGGATTAATTGTTTTC 57.675 29.630 20.25 4.29 45.76 2.29
73 74 9.758651 GTAACAAAAACAGAGGGATTAATTGTT 57.241 29.630 0.00 0.00 40.40 2.83
74 75 9.143155 AGTAACAAAAACAGAGGGATTAATTGT 57.857 29.630 0.00 0.00 0.00 2.71
75 76 9.626045 GAGTAACAAAAACAGAGGGATTAATTG 57.374 33.333 0.00 0.00 0.00 2.32
76 77 8.803235 GGAGTAACAAAAACAGAGGGATTAATT 58.197 33.333 0.00 0.00 0.00 1.40
77 78 7.120726 CGGAGTAACAAAAACAGAGGGATTAAT 59.879 37.037 0.00 0.00 0.00 1.40
78 79 6.428771 CGGAGTAACAAAAACAGAGGGATTAA 59.571 38.462 0.00 0.00 0.00 1.40
79 80 5.935789 CGGAGTAACAAAAACAGAGGGATTA 59.064 40.000 0.00 0.00 0.00 1.75
80 81 4.760204 CGGAGTAACAAAAACAGAGGGATT 59.240 41.667 0.00 0.00 0.00 3.01
81 82 4.324267 CGGAGTAACAAAAACAGAGGGAT 58.676 43.478 0.00 0.00 0.00 3.85
82 83 3.735591 CGGAGTAACAAAAACAGAGGGA 58.264 45.455 0.00 0.00 0.00 4.20
83 84 2.225727 GCGGAGTAACAAAAACAGAGGG 59.774 50.000 0.00 0.00 0.00 4.30
84 85 2.875933 TGCGGAGTAACAAAAACAGAGG 59.124 45.455 0.00 0.00 0.00 3.69
85 86 4.749245 ATGCGGAGTAACAAAAACAGAG 57.251 40.909 0.00 0.00 0.00 3.35
86 87 6.811253 AATATGCGGAGTAACAAAAACAGA 57.189 33.333 0.00 0.00 0.00 3.41
87 88 6.687105 GCTAATATGCGGAGTAACAAAAACAG 59.313 38.462 0.00 0.00 0.00 3.16
88 89 6.373216 AGCTAATATGCGGAGTAACAAAAACA 59.627 34.615 0.00 0.00 38.13 2.83
89 90 6.782150 AGCTAATATGCGGAGTAACAAAAAC 58.218 36.000 0.00 0.00 38.13 2.43
90 91 6.995511 AGCTAATATGCGGAGTAACAAAAA 57.004 33.333 0.00 0.00 38.13 1.94
91 92 6.995511 AAGCTAATATGCGGAGTAACAAAA 57.004 33.333 0.00 0.00 38.13 2.44
92 93 6.596106 TCAAAGCTAATATGCGGAGTAACAAA 59.404 34.615 0.00 0.00 38.13 2.83
93 94 6.036735 GTCAAAGCTAATATGCGGAGTAACAA 59.963 38.462 0.00 0.00 38.13 2.83
94 95 5.522460 GTCAAAGCTAATATGCGGAGTAACA 59.478 40.000 0.00 0.00 38.13 2.41
95 96 5.753921 AGTCAAAGCTAATATGCGGAGTAAC 59.246 40.000 0.00 0.00 38.13 2.50
96 97 5.753438 CAGTCAAAGCTAATATGCGGAGTAA 59.247 40.000 0.00 0.00 38.13 2.24
97 98 5.068591 TCAGTCAAAGCTAATATGCGGAGTA 59.931 40.000 0.00 0.00 38.13 2.59
98 99 4.122776 CAGTCAAAGCTAATATGCGGAGT 58.877 43.478 0.00 0.00 38.13 3.85
99 100 4.371786 TCAGTCAAAGCTAATATGCGGAG 58.628 43.478 0.00 0.00 38.13 4.63
100 101 4.400529 TCAGTCAAAGCTAATATGCGGA 57.599 40.909 0.00 0.00 38.13 5.54
101 102 4.572389 ACTTCAGTCAAAGCTAATATGCGG 59.428 41.667 0.00 0.00 38.13 5.69
102 103 5.725110 ACTTCAGTCAAAGCTAATATGCG 57.275 39.130 0.00 0.00 38.13 4.73
213 214 9.645128 ACCAAATCTATACAATTGGATTCATCA 57.355 29.630 8.85 0.00 44.01 3.07
214 215 9.903682 CACCAAATCTATACAATTGGATTCATC 57.096 33.333 8.85 0.00 44.01 2.92
215 216 8.863086 CCACCAAATCTATACAATTGGATTCAT 58.137 33.333 8.85 0.00 44.01 2.57
216 217 7.838696 ACCACCAAATCTATACAATTGGATTCA 59.161 33.333 8.85 0.00 44.01 2.57
217 218 8.137437 CACCACCAAATCTATACAATTGGATTC 58.863 37.037 8.85 0.00 44.01 2.52
218 219 7.619302 ACACCACCAAATCTATACAATTGGATT 59.381 33.333 8.85 5.22 44.01 3.01
219 220 7.125391 ACACCACCAAATCTATACAATTGGAT 58.875 34.615 8.55 8.55 44.01 3.41
220 221 6.489603 ACACCACCAAATCTATACAATTGGA 58.510 36.000 10.83 0.10 44.01 3.53
221 222 6.773976 ACACCACCAAATCTATACAATTGG 57.226 37.500 10.83 2.02 46.14 3.16
285 286 9.185680 ACATTAGGTTTGTCTAAAGTCAAACTT 57.814 29.630 22.82 19.87 46.04 2.66
286 287 8.621286 CACATTAGGTTTGTCTAAAGTCAAACT 58.379 33.333 22.82 15.28 46.04 2.66
287 288 7.378728 GCACATTAGGTTTGTCTAAAGTCAAAC 59.621 37.037 18.49 18.49 46.05 2.93
288 289 7.422399 GCACATTAGGTTTGTCTAAAGTCAAA 58.578 34.615 0.00 0.00 31.38 2.69
289 290 6.293190 CGCACATTAGGTTTGTCTAAAGTCAA 60.293 38.462 0.00 0.00 31.38 3.18
290 291 5.178623 CGCACATTAGGTTTGTCTAAAGTCA 59.821 40.000 0.00 0.00 31.38 3.41
291 292 5.178809 ACGCACATTAGGTTTGTCTAAAGTC 59.821 40.000 0.00 0.00 31.38 3.01
292 293 5.061179 ACGCACATTAGGTTTGTCTAAAGT 58.939 37.500 0.00 0.00 33.21 2.66
293 294 5.607119 ACGCACATTAGGTTTGTCTAAAG 57.393 39.130 0.00 0.00 33.54 1.85
294 295 6.225318 ACTACGCACATTAGGTTTGTCTAAA 58.775 36.000 0.00 0.00 33.54 1.85
295 296 5.786311 ACTACGCACATTAGGTTTGTCTAA 58.214 37.500 0.00 0.00 34.23 2.10
296 297 5.395682 ACTACGCACATTAGGTTTGTCTA 57.604 39.130 0.00 0.00 0.00 2.59
297 298 4.267349 ACTACGCACATTAGGTTTGTCT 57.733 40.909 0.00 0.00 0.00 3.41
298 299 6.470557 TTTACTACGCACATTAGGTTTGTC 57.529 37.500 0.00 0.00 0.00 3.18
299 300 8.550710 TTATTTACTACGCACATTAGGTTTGT 57.449 30.769 0.00 0.00 0.00 2.83
300 301 9.828852 TTTTATTTACTACGCACATTAGGTTTG 57.171 29.630 0.00 0.00 0.00 2.93
302 303 9.830294 GTTTTTATTTACTACGCACATTAGGTT 57.170 29.630 0.00 0.00 0.00 3.50
303 304 9.001542 TGTTTTTATTTACTACGCACATTAGGT 57.998 29.630 0.00 0.00 0.00 3.08
304 305 9.485591 CTGTTTTTATTTACTACGCACATTAGG 57.514 33.333 0.00 0.00 0.00 2.69
307 308 8.995220 TCTCTGTTTTTATTTACTACGCACATT 58.005 29.630 0.00 0.00 0.00 2.71
308 309 8.542497 TCTCTGTTTTTATTTACTACGCACAT 57.458 30.769 0.00 0.00 0.00 3.21
309 310 7.949903 TCTCTGTTTTTATTTACTACGCACA 57.050 32.000 0.00 0.00 0.00 4.57
310 311 9.314501 CTTTCTCTGTTTTTATTTACTACGCAC 57.685 33.333 0.00 0.00 0.00 5.34
311 312 9.048446 ACTTTCTCTGTTTTTATTTACTACGCA 57.952 29.630 0.00 0.00 0.00 5.24
336 337 9.760077 CCCTACGACCCATAATTATTCATATAC 57.240 37.037 0.00 0.00 0.00 1.47
337 338 9.496710 ACCCTACGACCCATAATTATTCATATA 57.503 33.333 0.00 0.00 0.00 0.86
338 339 8.388656 ACCCTACGACCCATAATTATTCATAT 57.611 34.615 0.00 0.00 0.00 1.78
339 340 7.455323 TGACCCTACGACCCATAATTATTCATA 59.545 37.037 0.00 0.00 0.00 2.15
340 341 6.271391 TGACCCTACGACCCATAATTATTCAT 59.729 38.462 0.00 0.00 0.00 2.57
341 342 5.603395 TGACCCTACGACCCATAATTATTCA 59.397 40.000 0.00 0.00 0.00 2.57
342 343 5.930569 GTGACCCTACGACCCATAATTATTC 59.069 44.000 0.00 0.00 0.00 1.75
343 344 5.367352 TGTGACCCTACGACCCATAATTATT 59.633 40.000 0.00 0.00 0.00 1.40
344 345 4.903049 TGTGACCCTACGACCCATAATTAT 59.097 41.667 0.00 0.00 0.00 1.28
345 346 4.288398 TGTGACCCTACGACCCATAATTA 58.712 43.478 0.00 0.00 0.00 1.40
346 347 3.109151 TGTGACCCTACGACCCATAATT 58.891 45.455 0.00 0.00 0.00 1.40
347 348 2.754465 TGTGACCCTACGACCCATAAT 58.246 47.619 0.00 0.00 0.00 1.28
348 349 2.234896 TGTGACCCTACGACCCATAA 57.765 50.000 0.00 0.00 0.00 1.90
349 350 2.234896 TTGTGACCCTACGACCCATA 57.765 50.000 0.00 0.00 0.00 2.74
350 351 1.580059 ATTGTGACCCTACGACCCAT 58.420 50.000 0.00 0.00 0.00 4.00
351 352 1.002659 CAATTGTGACCCTACGACCCA 59.997 52.381 0.00 0.00 0.00 4.51
352 353 1.677820 CCAATTGTGACCCTACGACCC 60.678 57.143 4.43 0.00 0.00 4.46
353 354 1.677820 CCCAATTGTGACCCTACGACC 60.678 57.143 4.43 0.00 0.00 4.79
354 355 1.276989 TCCCAATTGTGACCCTACGAC 59.723 52.381 4.43 0.00 0.00 4.34
355 356 1.646912 TCCCAATTGTGACCCTACGA 58.353 50.000 4.43 0.00 0.00 3.43
356 357 2.483014 TTCCCAATTGTGACCCTACG 57.517 50.000 4.43 0.00 0.00 3.51
357 358 6.126409 TCAATATTCCCAATTGTGACCCTAC 58.874 40.000 4.43 0.00 36.07 3.18
358 359 6.334378 TCAATATTCCCAATTGTGACCCTA 57.666 37.500 4.43 0.00 36.07 3.53
359 360 5.205517 TCAATATTCCCAATTGTGACCCT 57.794 39.130 4.43 0.00 36.07 4.34
360 361 5.835280 AGATCAATATTCCCAATTGTGACCC 59.165 40.000 4.43 0.00 36.07 4.46
361 362 6.293626 CGAGATCAATATTCCCAATTGTGACC 60.294 42.308 4.43 0.00 36.07 4.02
362 363 6.260936 ACGAGATCAATATTCCCAATTGTGAC 59.739 38.462 4.43 0.00 36.07 3.67
363 364 6.356556 ACGAGATCAATATTCCCAATTGTGA 58.643 36.000 4.43 0.00 36.07 3.58
364 365 6.564686 CGACGAGATCAATATTCCCAATTGTG 60.565 42.308 4.43 0.00 36.07 3.33
365 366 5.466728 CGACGAGATCAATATTCCCAATTGT 59.533 40.000 4.43 0.00 36.07 2.71
366 367 5.696270 TCGACGAGATCAATATTCCCAATTG 59.304 40.000 0.00 0.00 35.98 2.32
367 368 5.853936 TCGACGAGATCAATATTCCCAATT 58.146 37.500 0.00 0.00 0.00 2.32
368 369 5.468540 TCGACGAGATCAATATTCCCAAT 57.531 39.130 0.00 0.00 0.00 3.16
369 370 4.262036 CCTCGACGAGATCAATATTCCCAA 60.262 45.833 26.11 0.00 0.00 4.12
370 371 3.255888 CCTCGACGAGATCAATATTCCCA 59.744 47.826 26.11 0.00 0.00 4.37
371 372 3.506455 TCCTCGACGAGATCAATATTCCC 59.494 47.826 26.11 0.00 0.00 3.97
372 373 4.380023 CCTCCTCGACGAGATCAATATTCC 60.380 50.000 26.11 0.00 30.97 3.01
373 374 4.728534 CCTCCTCGACGAGATCAATATTC 58.271 47.826 26.11 0.00 30.97 1.75
374 375 3.057174 GCCTCCTCGACGAGATCAATATT 60.057 47.826 26.11 0.00 30.97 1.28
375 376 2.490115 GCCTCCTCGACGAGATCAATAT 59.510 50.000 26.11 0.00 30.97 1.28
376 377 1.880675 GCCTCCTCGACGAGATCAATA 59.119 52.381 26.11 3.56 30.97 1.90
377 378 0.671251 GCCTCCTCGACGAGATCAAT 59.329 55.000 26.11 0.00 30.97 2.57
378 379 0.679960 TGCCTCCTCGACGAGATCAA 60.680 55.000 26.11 7.61 30.97 2.57
379 380 0.679960 TTGCCTCCTCGACGAGATCA 60.680 55.000 26.11 13.85 30.97 2.92
380 381 0.030101 CTTGCCTCCTCGACGAGATC 59.970 60.000 26.11 11.60 30.97 2.75
381 382 0.394488 TCTTGCCTCCTCGACGAGAT 60.394 55.000 26.11 0.00 30.97 2.75
382 383 1.002502 TCTTGCCTCCTCGACGAGA 60.003 57.895 26.11 11.08 30.97 4.04
383 384 1.027255 TCTCTTGCCTCCTCGACGAG 61.027 60.000 18.08 18.08 0.00 4.18
384 385 0.394488 ATCTCTTGCCTCCTCGACGA 60.394 55.000 0.00 0.00 0.00 4.20
385 386 1.309950 TATCTCTTGCCTCCTCGACG 58.690 55.000 0.00 0.00 0.00 5.12
386 387 3.802948 TTTATCTCTTGCCTCCTCGAC 57.197 47.619 0.00 0.00 0.00 4.20
387 388 3.769844 ACTTTTATCTCTTGCCTCCTCGA 59.230 43.478 0.00 0.00 0.00 4.04
388 389 4.130286 ACTTTTATCTCTTGCCTCCTCG 57.870 45.455 0.00 0.00 0.00 4.63
389 390 7.923414 TTTTACTTTTATCTCTTGCCTCCTC 57.077 36.000 0.00 0.00 0.00 3.71
413 414 9.643693 CATCTAAAGACTGTTGGCATTTTATTT 57.356 29.630 0.00 0.00 0.00 1.40
414 415 9.023962 TCATCTAAAGACTGTTGGCATTTTATT 57.976 29.630 0.00 0.00 0.00 1.40
415 416 8.579850 TCATCTAAAGACTGTTGGCATTTTAT 57.420 30.769 0.00 0.00 0.00 1.40
416 417 7.994425 TCATCTAAAGACTGTTGGCATTTTA 57.006 32.000 0.00 0.00 0.00 1.52
417 418 6.899393 TCATCTAAAGACTGTTGGCATTTT 57.101 33.333 0.00 0.00 0.00 1.82
418 419 6.294731 GGTTCATCTAAAGACTGTTGGCATTT 60.295 38.462 0.00 0.00 0.00 2.32
419 420 5.183904 GGTTCATCTAAAGACTGTTGGCATT 59.816 40.000 0.00 0.00 0.00 3.56
420 421 4.702131 GGTTCATCTAAAGACTGTTGGCAT 59.298 41.667 0.00 0.00 0.00 4.40
421 422 4.072131 GGTTCATCTAAAGACTGTTGGCA 58.928 43.478 0.00 0.00 0.00 4.92
422 423 3.440522 GGGTTCATCTAAAGACTGTTGGC 59.559 47.826 0.00 0.00 0.00 4.52
423 424 4.651778 TGGGTTCATCTAAAGACTGTTGG 58.348 43.478 0.00 0.00 0.00 3.77
424 425 6.824305 AATGGGTTCATCTAAAGACTGTTG 57.176 37.500 0.00 0.00 32.24 3.33
425 426 8.960591 CATAAATGGGTTCATCTAAAGACTGTT 58.039 33.333 0.00 0.00 32.24 3.16
426 427 7.557719 CCATAAATGGGTTCATCTAAAGACTGT 59.442 37.037 0.67 0.00 44.31 3.55
427 428 7.934457 CCATAAATGGGTTCATCTAAAGACTG 58.066 38.462 0.67 0.00 44.31 3.51
438 439 7.802340 TGTACATCACATCCATAAATGGGTTCA 60.802 37.037 9.10 0.00 38.37 3.18
439 440 6.545666 TGTACATCACATCCATAAATGGGTTC 59.454 38.462 9.10 0.00 38.37 3.62
440 441 6.430864 TGTACATCACATCCATAAATGGGTT 58.569 36.000 9.10 0.00 38.37 4.11
441 442 6.012337 TGTACATCACATCCATAAATGGGT 57.988 37.500 9.10 0.00 43.60 4.51
442 443 6.547141 ACTTGTACATCACATCCATAAATGGG 59.453 38.462 9.10 0.00 39.64 4.00
443 444 7.500227 AGACTTGTACATCACATCCATAAATGG 59.500 37.037 0.00 2.34 40.17 3.16
444 445 8.442632 AGACTTGTACATCACATCCATAAATG 57.557 34.615 0.00 0.00 36.90 2.32
445 446 8.896744 CAAGACTTGTACATCACATCCATAAAT 58.103 33.333 7.05 0.00 36.90 1.40
446 447 8.100164 TCAAGACTTGTACATCACATCCATAAA 58.900 33.333 14.75 0.00 36.90 1.40
447 448 7.619965 TCAAGACTTGTACATCACATCCATAA 58.380 34.615 14.75 0.00 36.90 1.90
448 449 7.181569 TCAAGACTTGTACATCACATCCATA 57.818 36.000 14.75 0.00 36.90 2.74
449 450 6.053632 TCAAGACTTGTACATCACATCCAT 57.946 37.500 14.75 0.00 36.90 3.41
472 473 8.348285 TGCAACTAGGCAAATTAAGTCTAATT 57.652 30.769 0.00 0.00 41.65 1.40
525 526 3.577805 ATACAAAGTGGGGATGTAGGC 57.422 47.619 0.00 0.00 0.00 3.93
527 528 6.603201 ACAATGAATACAAAGTGGGGATGTAG 59.397 38.462 0.00 0.00 0.00 2.74
529 530 5.185635 CACAATGAATACAAAGTGGGGATGT 59.814 40.000 0.00 0.00 33.98 3.06
544 545 5.163723 CGATGCTAGAAACCACACAATGAAT 60.164 40.000 0.00 0.00 0.00 2.57
572 573 0.944386 TGCAGAGAAAACGAGTTGCC 59.056 50.000 0.00 0.00 0.00 4.52
585 586 2.483491 GAGGAGAAGCTTGTTTGCAGAG 59.517 50.000 2.10 0.00 34.99 3.35
654 655 9.800572 TCTATCGCTATATATCTAGCCAGAAAT 57.199 33.333 12.97 4.23 40.87 2.17
658 659 7.120432 TGCATCTATCGCTATATATCTAGCCAG 59.880 40.741 12.97 8.74 40.87 4.85
837 888 4.511454 TGGAAGATAATCGCATGCAACTAC 59.489 41.667 19.57 4.17 0.00 2.73
903 957 6.705825 GGGAAATGGTTTTGATGTATATTGCC 59.294 38.462 0.00 0.00 0.00 4.52
940 1031 4.154918 ACAAGATCTTTCTCGGCAATCAAC 59.845 41.667 4.86 0.00 0.00 3.18
966 1057 1.810030 GGTTAGCGGAGTTGGCGAG 60.810 63.158 0.00 0.00 35.00 5.03
985 1080 4.080863 AGTCGGCATTGGATCTTCTTAACT 60.081 41.667 0.00 0.00 0.00 2.24
992 1087 1.745141 GCAGAGTCGGCATTGGATCTT 60.745 52.381 10.61 0.00 0.00 2.40
997 1092 0.674581 TTCTGCAGAGTCGGCATTGG 60.675 55.000 18.45 7.48 41.06 3.16
1419 1514 4.728110 TGCAGGCGCTTGATGGCT 62.728 61.111 25.12 0.00 43.90 4.75
1546 1641 1.227853 GCCACGACAGAAGGTTGGT 60.228 57.895 0.00 0.00 34.98 3.67
1608 1703 2.278013 GCGACATCGACGAGTCCC 60.278 66.667 16.53 8.33 43.02 4.46
1835 1951 4.707030 TCAGATTGTCAAATCCATGCAC 57.293 40.909 0.00 0.00 42.84 4.57
1863 1979 5.105310 TGGTTAGCTTGGTCATAAGAGAGAC 60.105 44.000 0.00 0.00 0.00 3.36
1996 2184 8.746530 AGATAGTCACAATTGATCTTGCATTTT 58.253 29.630 13.59 0.00 33.11 1.82
1997 2185 8.188799 CAGATAGTCACAATTGATCTTGCATTT 58.811 33.333 13.59 0.00 33.11 2.32
2011 2659 4.678044 GCAAGATCGACCAGATAGTCACAA 60.678 45.833 0.00 0.00 40.26 3.33
2020 2668 0.321346 TGCAAGCAAGATCGACCAGA 59.679 50.000 0.00 0.00 0.00 3.86
2021 2669 1.063616 CATGCAAGCAAGATCGACCAG 59.936 52.381 0.00 0.00 0.00 4.00
2027 2675 6.038603 TCCACTAAATACATGCAAGCAAGATC 59.961 38.462 4.12 0.00 0.00 2.75
2030 2678 5.565592 TCCACTAAATACATGCAAGCAAG 57.434 39.130 0.00 0.00 0.00 4.01
2044 2692 8.407832 GCTTTTTACCAGTTAGTTTCCACTAAA 58.592 33.333 0.00 0.00 45.31 1.85
2055 2731 9.880157 TTATACACTAGGCTTTTTACCAGTTAG 57.120 33.333 0.00 0.00 0.00 2.34
2089 2765 0.665835 TTTCGTTGTCATGGTGCACC 59.334 50.000 29.67 29.67 0.00 5.01
2113 2789 9.684448 CAATGATTCGTAAGTGTATAGAGTCAT 57.316 33.333 0.00 0.00 39.05 3.06
2119 2795 8.642908 TGGTTCAATGATTCGTAAGTGTATAG 57.357 34.615 0.00 0.00 39.48 1.31
2122 2798 7.822334 AGAATGGTTCAATGATTCGTAAGTGTA 59.178 33.333 0.00 0.00 39.48 2.90
2129 2807 9.003658 GGAATATAGAATGGTTCAATGATTCGT 57.996 33.333 0.00 0.00 32.39 3.85
2130 2808 9.224267 AGGAATATAGAATGGTTCAATGATTCG 57.776 33.333 0.00 0.00 32.39 3.34
2159 2837 7.518211 CGAGTGACAAATTCAATGTAAGACACA 60.518 37.037 0.00 0.00 42.69 3.72
2160 2838 6.792250 CGAGTGACAAATTCAATGTAAGACAC 59.208 38.462 0.00 0.00 35.39 3.67
2178 2859 0.647410 CACATGAATCGGCGAGTGAC 59.353 55.000 16.91 1.02 0.00 3.67
2241 3020 0.904649 TGACATAGGGTCCACTGCAG 59.095 55.000 13.48 13.48 46.38 4.41
2301 3080 6.773976 AATTTGTGAGGACTCAAGAAAACA 57.226 33.333 3.18 0.00 41.85 2.83
2313 3092 1.546773 CCCCCGACAAATTTGTGAGGA 60.547 52.381 29.73 0.00 42.43 3.71
2574 3404 0.246910 TTTGCAGTATCGGCGGTGTA 59.753 50.000 7.21 0.00 0.00 2.90
2622 3452 6.539173 TGTGTCATACCCAACATACTCTTTT 58.461 36.000 0.00 0.00 0.00 2.27
2646 3476 4.598257 CGCTCACGAAGGTCCATT 57.402 55.556 0.00 0.00 43.93 3.16
2712 3542 1.470098 CTTGTGTTGCCTAGCACCATC 59.530 52.381 0.00 0.00 38.71 3.51
2768 3598 3.455910 CTCCTTCATGGTAACTGATGGGA 59.544 47.826 10.30 7.03 38.09 4.37
2786 3616 5.105064 CCAAAATCATCAAATGGCTTCTCCT 60.105 40.000 0.00 0.00 35.26 3.69
2788 3618 5.579511 CACCAAAATCATCAAATGGCTTCTC 59.420 40.000 0.00 0.00 34.45 2.87
2899 3732 1.202651 CCTCGCCTGGATACCGAAAAT 60.203 52.381 0.00 0.00 0.00 1.82
2907 3740 2.201490 CCTCCCCTCGCCTGGATA 59.799 66.667 0.00 0.00 0.00 2.59
3029 3862 4.398988 ACTGAAACAAGCAAGTTGACATCA 59.601 37.500 7.16 1.16 38.60 3.07
3030 3863 4.925068 ACTGAAACAAGCAAGTTGACATC 58.075 39.130 7.16 0.00 38.60 3.06
3066 3909 7.714377 TGAAAATTTGTGATGGCAAACAGTAAT 59.286 29.630 6.50 3.14 40.58 1.89
3298 4144 6.401394 TCAATGGTTCTATGTGAAGAGACAG 58.599 40.000 0.00 0.00 35.01 3.51
3352 4198 2.102420 CCGCGGGCTTATCCATCATATA 59.898 50.000 20.10 0.00 36.21 0.86
3379 4225 8.132995 GTCTAAGTAGCTCTGGAACTTCTTATC 58.867 40.741 2.11 0.00 35.23 1.75
3414 4260 2.613691 GGCATGGAGAGTGCAATTTTG 58.386 47.619 0.00 0.00 44.25 2.44
3448 4294 3.503748 CCTTTCGGAAAGCTGACAATCTT 59.496 43.478 22.13 0.00 37.18 2.40
3509 4355 5.707242 TGGTAACTAGTGAGACACTCAAG 57.293 43.478 7.68 4.26 44.20 3.02
3575 4443 6.588756 CGGTAAAGTGTAGCTTATCACTGAAA 59.411 38.462 15.87 5.92 42.95 2.69
3623 4493 9.116067 CATTTTCATAAATTGGCATCCATTCTT 57.884 29.630 0.00 0.00 31.63 2.52
3625 4495 7.227910 AGCATTTTCATAAATTGGCATCCATTC 59.772 33.333 0.00 0.00 31.63 2.67
3741 4639 8.475331 ACACCAATACATAGTCTTTTACTTCG 57.525 34.615 0.00 0.00 39.80 3.79
3774 4672 9.889128 TGAACAATCTGATCATAATGTTCTGTA 57.111 29.630 28.20 15.11 44.18 2.74
3775 4673 8.797350 TGAACAATCTGATCATAATGTTCTGT 57.203 30.769 28.20 12.41 44.18 3.41
3778 4676 9.459640 CCAATGAACAATCTGATCATAATGTTC 57.540 33.333 24.57 24.57 38.66 3.18
3782 4680 7.071273 ACCCCAATGAACAATCTGATCATAAT 58.929 34.615 0.00 0.00 38.66 1.28
3800 4698 8.879227 TCTTCAAAAGATTCAATAAACCCCAAT 58.121 29.630 0.00 0.00 31.20 3.16
3834 4732 9.784531 AGCATACAAAGCTACTCAATTATACAT 57.215 29.630 0.00 0.00 41.32 2.29
3846 4744 3.438297 TCGGAGAGCATACAAAGCTAC 57.562 47.619 0.00 0.00 43.58 3.58
3864 4762 3.428045 GGCCAAAGAAGACAAATGGATCG 60.428 47.826 0.00 0.00 32.82 3.69
3869 4767 7.098477 TCAATATTGGCCAAAGAAGACAAATG 58.902 34.615 24.71 9.75 0.00 2.32
3870 4768 7.243604 TCAATATTGGCCAAAGAAGACAAAT 57.756 32.000 24.71 3.98 0.00 2.32
3879 4777 6.906157 ACTATCCATCAATATTGGCCAAAG 57.094 37.500 24.71 12.89 34.06 2.77
3889 4787 8.972662 TCCCTCTAATGAACTATCCATCAATA 57.027 34.615 0.00 0.00 0.00 1.90
3890 4788 7.515514 ACTCCCTCTAATGAACTATCCATCAAT 59.484 37.037 0.00 0.00 0.00 2.57
3892 4790 6.268617 CACTCCCTCTAATGAACTATCCATCA 59.731 42.308 0.00 0.00 0.00 3.07
3899 4797 3.451178 GCACCACTCCCTCTAATGAACTA 59.549 47.826 0.00 0.00 0.00 2.24
3905 4803 3.658725 ACTATGCACCACTCCCTCTAAT 58.341 45.455 0.00 0.00 0.00 1.73
3912 4810 1.139058 CCCACTACTATGCACCACTCC 59.861 57.143 0.00 0.00 0.00 3.85
3916 4814 2.261729 TGAACCCACTACTATGCACCA 58.738 47.619 0.00 0.00 0.00 4.17
3917 4815 3.343941 TTGAACCCACTACTATGCACC 57.656 47.619 0.00 0.00 0.00 5.01
3924 4822 2.632377 CGCATGATTGAACCCACTACT 58.368 47.619 0.00 0.00 0.00 2.57
3928 4826 0.171007 CACCGCATGATTGAACCCAC 59.829 55.000 0.00 0.00 0.00 4.61
3938 4836 2.990642 CGGATGAATCACCGCATGA 58.009 52.632 10.32 0.00 42.55 3.07
3950 4848 2.370519 TCCCTTTTTGTCACTCGGATGA 59.629 45.455 0.00 0.00 0.00 2.92
3951 4849 2.778299 TCCCTTTTTGTCACTCGGATG 58.222 47.619 0.00 0.00 0.00 3.51
3956 4856 5.281727 GTGTTCATTCCCTTTTTGTCACTC 58.718 41.667 0.00 0.00 0.00 3.51
3962 4862 6.212955 ACAATACGTGTTCATTCCCTTTTTG 58.787 36.000 0.00 0.00 37.01 2.44
3964 4864 7.696992 ATACAATACGTGTTCATTCCCTTTT 57.303 32.000 0.00 0.00 41.98 2.27
3972 4872 5.184096 TGGCCAAAATACAATACGTGTTCAT 59.816 36.000 0.61 0.00 41.98 2.57
3973 4873 4.519350 TGGCCAAAATACAATACGTGTTCA 59.481 37.500 0.61 0.00 41.98 3.18
3974 4874 4.854839 GTGGCCAAAATACAATACGTGTTC 59.145 41.667 7.24 0.00 41.98 3.18
3975 4875 4.521256 AGTGGCCAAAATACAATACGTGTT 59.479 37.500 7.24 0.00 41.98 3.32
3990 4890 5.598005 CCATCATTTTATCCTTAGTGGCCAA 59.402 40.000 7.24 0.00 35.26 4.52
3992 4892 5.140454 ACCATCATTTTATCCTTAGTGGCC 58.860 41.667 0.00 0.00 35.26 5.36
4066 4966 3.615496 CCAAACAGAGCATTGCAATAAGC 59.385 43.478 12.53 12.56 45.96 3.09
4069 4969 7.637631 TTATACCAAACAGAGCATTGCAATA 57.362 32.000 12.53 0.00 0.00 1.90
4070 4970 6.528537 TTATACCAAACAGAGCATTGCAAT 57.471 33.333 11.91 5.99 0.00 3.56
4116 5016 1.351017 CCACCCAATACCGCTATCCAT 59.649 52.381 0.00 0.00 0.00 3.41
4128 5028 5.428783 AGCTACAACTAATACTCCACCCAAT 59.571 40.000 0.00 0.00 0.00 3.16
4151 5314 3.749088 TGTAAACCGTTATCCAACTGCAG 59.251 43.478 13.48 13.48 32.09 4.41
4165 5328 4.968259 TCCCCTCAATGATATGTAAACCG 58.032 43.478 0.00 0.00 0.00 4.44
4179 5342 7.519347 ACCTAACAATAAGTATTCCCCTCAA 57.481 36.000 0.00 0.00 0.00 3.02
4180 5343 7.519347 AACCTAACAATAAGTATTCCCCTCA 57.481 36.000 0.00 0.00 0.00 3.86
4190 5741 7.325725 AGGGTGAAGTAACCTAACAATAAGT 57.674 36.000 0.00 0.00 40.35 2.24
4191 5742 9.901172 ATAAGGGTGAAGTAACCTAACAATAAG 57.099 33.333 0.00 0.00 40.35 1.73
4198 5749 8.276477 CCCAAATATAAGGGTGAAGTAACCTAA 58.724 37.037 4.55 0.00 40.34 2.69
4252 5803 4.047059 CGGCTTGGCAGGTGCTTG 62.047 66.667 1.26 0.00 41.70 4.01
4305 5856 4.935495 CCCCGCCATCACCATCGG 62.935 72.222 0.00 0.00 41.41 4.18
4307 5858 4.504596 TGCCCCGCCATCACCATC 62.505 66.667 0.00 0.00 0.00 3.51
4308 5859 4.820744 GTGCCCCGCCATCACCAT 62.821 66.667 0.00 0.00 0.00 3.55
4310 5861 4.740822 AAGTGCCCCGCCATCACC 62.741 66.667 0.00 0.00 0.00 4.02
4311 5862 3.134127 GAAGTGCCCCGCCATCAC 61.134 66.667 0.00 0.00 0.00 3.06
4312 5863 4.424711 GGAAGTGCCCCGCCATCA 62.425 66.667 0.00 0.00 0.00 3.07
4313 5864 3.645268 AAGGAAGTGCCCCGCCATC 62.645 63.158 0.00 0.00 37.37 3.51
4314 5865 3.661648 AAGGAAGTGCCCCGCCAT 61.662 61.111 0.00 0.00 37.37 4.40
4315 5866 4.659172 CAAGGAAGTGCCCCGCCA 62.659 66.667 0.00 0.00 37.37 5.69
4318 5869 3.058160 CTGCAAGGAAGTGCCCCG 61.058 66.667 0.00 0.00 44.26 5.73
4319 5870 3.376918 GCTGCAAGGAAGTGCCCC 61.377 66.667 0.00 0.00 44.26 5.80
4320 5871 2.282745 AGCTGCAAGGAAGTGCCC 60.283 61.111 1.02 0.00 44.26 5.36
4321 5872 2.960170 CAGCTGCAAGGAAGTGCC 59.040 61.111 0.00 0.00 44.26 5.01
4322 5873 1.803366 AAGCAGCTGCAAGGAAGTGC 61.803 55.000 38.24 10.41 45.16 4.40
4323 5874 0.240411 GAAGCAGCTGCAAGGAAGTG 59.760 55.000 38.24 0.00 45.16 3.16
4324 5875 1.233285 CGAAGCAGCTGCAAGGAAGT 61.233 55.000 38.24 15.14 45.16 3.01
4325 5876 0.952497 TCGAAGCAGCTGCAAGGAAG 60.952 55.000 38.24 22.29 45.16 3.46
4326 5877 0.321919 ATCGAAGCAGCTGCAAGGAA 60.322 50.000 38.24 20.42 45.16 3.36
4327 5878 0.742281 GATCGAAGCAGCTGCAAGGA 60.742 55.000 38.24 29.35 45.16 3.36
4328 5879 0.743701 AGATCGAAGCAGCTGCAAGG 60.744 55.000 38.24 25.53 45.16 3.61
4329 5880 0.374063 CAGATCGAAGCAGCTGCAAG 59.626 55.000 38.24 27.29 45.16 4.01
4330 5881 1.022982 CCAGATCGAAGCAGCTGCAA 61.023 55.000 38.24 21.47 45.16 4.08
4331 5882 1.449070 CCAGATCGAAGCAGCTGCA 60.449 57.895 38.24 20.06 45.16 4.41
4332 5883 2.178890 CCCAGATCGAAGCAGCTGC 61.179 63.158 31.53 31.53 42.49 5.25
4333 5884 1.523258 CCCCAGATCGAAGCAGCTG 60.523 63.158 10.11 10.11 0.00 4.24
4334 5885 2.739996 CCCCCAGATCGAAGCAGCT 61.740 63.158 0.00 0.00 0.00 4.24
4335 5886 2.203126 CCCCCAGATCGAAGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
4336 5887 2.203126 GCCCCCAGATCGAAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
4337 5888 3.797353 GGCCCCCAGATCGAAGCA 61.797 66.667 0.00 0.00 0.00 3.91
4338 5889 4.570874 GGGCCCCCAGATCGAAGC 62.571 72.222 12.23 0.00 35.81 3.86
4339 5890 2.770048 AGGGCCCCCAGATCGAAG 60.770 66.667 21.43 0.00 38.92 3.79
4340 5891 3.089874 CAGGGCCCCCAGATCGAA 61.090 66.667 21.43 0.00 38.92 3.71
4353 5904 4.778143 CGAAACGGGGAGCCAGGG 62.778 72.222 0.00 0.00 0.00 4.45
4354 5905 4.778143 CCGAAACGGGGAGCCAGG 62.778 72.222 2.00 0.00 44.15 4.45
4361 5912 3.460822 GCAATTGCTACCGAAACGGGG 62.461 57.143 23.21 7.85 44.33 5.73
4362 5913 0.179174 GCAATTGCTACCGAAACGGG 60.179 55.000 23.21 0.00 44.33 5.28
4363 5914 3.306206 GCAATTGCTACCGAAACGG 57.694 52.632 23.21 8.67 45.03 4.44
4364 5915 1.463056 TCTGCAATTGCTACCGAAACG 59.537 47.619 29.37 8.07 42.66 3.60
4365 5916 3.552604 TTCTGCAATTGCTACCGAAAC 57.447 42.857 29.37 0.00 42.66 2.78
4366 5917 3.611530 GCTTTCTGCAATTGCTACCGAAA 60.612 43.478 29.37 25.45 42.66 3.46
4367 5918 2.095263 GCTTTCTGCAATTGCTACCGAA 60.095 45.455 29.37 21.38 42.66 4.30
4368 5919 1.468520 GCTTTCTGCAATTGCTACCGA 59.531 47.619 29.37 17.42 42.66 4.69
4369 5920 1.468054 GGCTTTCTGCAATTGCTACCG 60.468 52.381 29.37 15.60 45.15 4.02
4370 5921 1.821136 AGGCTTTCTGCAATTGCTACC 59.179 47.619 29.37 19.83 45.15 3.18
4371 5922 2.872370 CAGGCTTTCTGCAATTGCTAC 58.128 47.619 29.37 12.79 45.15 3.58
4382 5933 0.385390 CAACCGCAAACAGGCTTTCT 59.615 50.000 0.00 0.00 0.00 2.52
4383 5934 1.215014 GCAACCGCAAACAGGCTTTC 61.215 55.000 0.00 0.00 38.36 2.62
4384 5935 1.227234 GCAACCGCAAACAGGCTTT 60.227 52.632 0.00 0.00 38.36 3.51
4385 5936 2.417097 GCAACCGCAAACAGGCTT 59.583 55.556 0.00 0.00 38.36 4.35
4395 5946 0.514691 GCTATAGATGCTGCAACCGC 59.485 55.000 6.36 0.97 39.24 5.68
4396 5947 1.869774 TGCTATAGATGCTGCAACCG 58.130 50.000 6.36 0.00 32.12 4.44
4397 5948 3.611057 GCATTGCTATAGATGCTGCAACC 60.611 47.826 15.71 1.43 46.08 3.77
4398 5949 3.004002 TGCATTGCTATAGATGCTGCAAC 59.996 43.478 20.89 3.53 46.68 4.17
4399 5950 3.215975 TGCATTGCTATAGATGCTGCAA 58.784 40.909 20.89 11.23 46.68 4.08
4400 5951 2.853705 TGCATTGCTATAGATGCTGCA 58.146 42.857 20.89 16.83 46.68 4.41
4401 5952 3.759418 CATGCATTGCTATAGATGCTGC 58.241 45.455 20.89 15.03 46.68 5.25
4414 5965 9.740239 AAATAAATTGAGTACTAGCATGCATTG 57.260 29.630 21.98 11.56 0.00 2.82
4415 5966 9.740239 CAAATAAATTGAGTACTAGCATGCATT 57.260 29.630 21.98 5.67 41.85 3.56
4416 5967 8.355169 CCAAATAAATTGAGTACTAGCATGCAT 58.645 33.333 21.98 7.44 41.85 3.96
4417 5968 7.681782 GCCAAATAAATTGAGTACTAGCATGCA 60.682 37.037 21.98 5.01 41.85 3.96
4418 5969 6.638468 GCCAAATAAATTGAGTACTAGCATGC 59.362 38.462 10.51 10.51 41.85 4.06
4419 5970 6.852853 CGCCAAATAAATTGAGTACTAGCATG 59.147 38.462 0.00 0.00 41.85 4.06
4420 5971 6.017109 CCGCCAAATAAATTGAGTACTAGCAT 60.017 38.462 0.00 0.00 41.85 3.79
4421 5972 5.295787 CCGCCAAATAAATTGAGTACTAGCA 59.704 40.000 0.00 0.00 41.85 3.49
4422 5973 5.748592 CCGCCAAATAAATTGAGTACTAGC 58.251 41.667 0.00 0.00 41.85 3.42
4423 5974 5.558273 CGCCGCCAAATAAATTGAGTACTAG 60.558 44.000 0.00 0.00 41.85 2.57
4424 5975 4.271533 CGCCGCCAAATAAATTGAGTACTA 59.728 41.667 0.00 0.00 41.85 1.82
4425 5976 3.064820 CGCCGCCAAATAAATTGAGTACT 59.935 43.478 0.00 0.00 41.85 2.73
4426 5977 3.359654 CGCCGCCAAATAAATTGAGTAC 58.640 45.455 0.00 0.00 41.85 2.73
4427 5978 2.223386 GCGCCGCCAAATAAATTGAGTA 60.223 45.455 0.00 0.00 41.85 2.59
4428 5979 1.469079 GCGCCGCCAAATAAATTGAGT 60.469 47.619 0.00 0.00 41.85 3.41
4429 5980 1.199624 GCGCCGCCAAATAAATTGAG 58.800 50.000 0.00 0.00 41.85 3.02
4430 5981 0.524392 CGCGCCGCCAAATAAATTGA 60.524 50.000 2.28 0.00 41.85 2.57
4431 5982 0.800300 ACGCGCCGCCAAATAAATTG 60.800 50.000 5.73 0.00 38.84 2.32
4432 5983 0.800300 CACGCGCCGCCAAATAAATT 60.800 50.000 5.73 0.00 0.00 1.82
4433 5984 1.226547 CACGCGCCGCCAAATAAAT 60.227 52.632 5.73 0.00 0.00 1.40
4434 5985 1.649390 ATCACGCGCCGCCAAATAAA 61.649 50.000 5.73 0.00 0.00 1.40
4435 5986 2.109739 ATCACGCGCCGCCAAATAA 61.110 52.632 5.73 0.00 0.00 1.40
4436 5987 2.512745 ATCACGCGCCGCCAAATA 60.513 55.556 5.73 0.00 0.00 1.40
4437 5988 4.178214 CATCACGCGCCGCCAAAT 62.178 61.111 5.73 0.00 0.00 2.32
4445 5996 3.027170 CTTGTGGGACATCACGCGC 62.027 63.158 5.73 0.00 44.52 6.86
4446 5997 0.389296 TACTTGTGGGACATCACGCG 60.389 55.000 3.53 3.53 44.52 6.01
4447 5998 2.024176 ATACTTGTGGGACATCACGC 57.976 50.000 0.00 0.00 44.52 5.34
4448 5999 3.492656 CCCTATACTTGTGGGACATCACG 60.493 52.174 0.00 0.00 44.52 4.35
4449 6000 3.181454 CCCCTATACTTGTGGGACATCAC 60.181 52.174 0.00 0.00 44.52 3.06
4450 6001 3.045634 CCCCTATACTTGTGGGACATCA 58.954 50.000 0.00 0.00 44.52 3.07
4451 6002 3.314693 TCCCCTATACTTGTGGGACATC 58.685 50.000 0.00 0.00 44.52 3.06
4452 6003 3.431411 TCCCCTATACTTGTGGGACAT 57.569 47.619 0.00 0.00 44.52 3.06
4453 6004 2.953093 TCCCCTATACTTGTGGGACA 57.047 50.000 0.00 0.00 42.14 4.02
4456 6007 4.350816 TGATTGATCCCCTATACTTGTGGG 59.649 45.833 0.00 0.00 40.59 4.61
4457 6008 5.567037 TGATTGATCCCCTATACTTGTGG 57.433 43.478 0.00 0.00 0.00 4.17
4458 6009 7.911651 ACTATGATTGATCCCCTATACTTGTG 58.088 38.462 0.00 0.00 0.00 3.33
4459 6010 7.958583 AGACTATGATTGATCCCCTATACTTGT 59.041 37.037 0.00 0.00 0.00 3.16
4460 6011 8.372877 AGACTATGATTGATCCCCTATACTTG 57.627 38.462 0.00 0.00 0.00 3.16
4461 6012 8.980832 AAGACTATGATTGATCCCCTATACTT 57.019 34.615 0.00 0.00 0.00 2.24
4462 6013 8.980832 AAAGACTATGATTGATCCCCTATACT 57.019 34.615 0.00 0.00 0.00 2.12
4463 6014 9.442047 CAAAAGACTATGATTGATCCCCTATAC 57.558 37.037 0.00 0.00 0.00 1.47
4464 6015 9.392506 TCAAAAGACTATGATTGATCCCCTATA 57.607 33.333 0.00 0.00 0.00 1.31
4465 6016 8.280258 TCAAAAGACTATGATTGATCCCCTAT 57.720 34.615 0.00 0.00 0.00 2.57
4466 6017 7.690454 TCAAAAGACTATGATTGATCCCCTA 57.310 36.000 0.00 0.00 0.00 3.53
4467 6018 6.581388 TCAAAAGACTATGATTGATCCCCT 57.419 37.500 0.00 0.00 0.00 4.79
4468 6019 8.924511 TTATCAAAAGACTATGATTGATCCCC 57.075 34.615 8.49 0.00 40.60 4.81
4469 6020 9.566432 ACTTATCAAAAGACTATGATTGATCCC 57.434 33.333 8.49 0.00 40.60 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.