Multiple sequence alignment - TraesCS2D01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G139100 chr2D 100.000 4874 0 0 1 4874 82110601 82105728 0.000000e+00 9001.0
1 TraesCS2D01G139100 chr2D 85.418 1831 215 31 2106 3916 83101687 83103485 0.000000e+00 1855.0
2 TraesCS2D01G139100 chr2D 88.855 332 11 7 1 309 193270406 193270078 7.650000e-103 385.0
3 TraesCS2D01G139100 chr2D 92.308 104 8 0 205 308 329144313 329144210 1.090000e-31 148.0
4 TraesCS2D01G139100 chr2D 86.517 89 9 3 4138 4223 401548187 401548099 1.440000e-15 95.3
5 TraesCS2D01G139100 chr2D 86.364 88 10 2 4135 4220 401548103 401548190 1.440000e-15 95.3
6 TraesCS2D01G139100 chr2D 100.000 47 0 0 3871 3917 82106684 82106638 2.420000e-13 87.9
7 TraesCS2D01G139100 chr2D 100.000 47 0 0 3918 3964 82106731 82106685 2.420000e-13 87.9
8 TraesCS2D01G139100 chr2D 93.182 44 3 0 1442 1485 612542446 612542489 1.130000e-06 65.8
9 TraesCS2D01G139100 chr2A 95.895 3337 104 19 1550 4874 82213060 82209745 0.000000e+00 5373.0
10 TraesCS2D01G139100 chr2A 85.761 1819 210 30 2118 3916 83784107 83785896 0.000000e+00 1879.0
11 TraesCS2D01G139100 chr2A 91.204 739 35 15 593 1326 82213838 82213125 0.000000e+00 977.0
12 TraesCS2D01G139100 chr2A 93.684 95 6 0 214 308 570733900 570733806 5.090000e-30 143.0
13 TraesCS2D01G139100 chr2A 100.000 47 0 0 3871 3917 82210697 82210651 2.420000e-13 87.9
14 TraesCS2D01G139100 chr2A 100.000 47 0 0 3918 3964 82210744 82210698 2.420000e-13 87.9
15 TraesCS2D01G139100 chr2A 76.757 185 25 13 3918 4101 83785851 83786018 2.420000e-13 87.9
16 TraesCS2D01G139100 chr2A 94.286 35 2 0 1454 1488 688641008 688640974 2.000000e-03 54.7
17 TraesCS2D01G139100 chr2B 94.377 1814 92 4 2106 3917 133849065 133847260 0.000000e+00 2776.0
18 TraesCS2D01G139100 chr2B 87.654 1863 126 35 306 2109 133851326 133849509 0.000000e+00 2071.0
19 TraesCS2D01G139100 chr2B 86.981 1805 212 17 2129 3916 134778793 134780591 0.000000e+00 2010.0
20 TraesCS2D01G139100 chr2B 85.824 522 50 13 4353 4874 133846836 133846339 2.580000e-147 532.0
21 TraesCS2D01G139100 chr2B 86.364 374 41 4 1741 2109 134778341 134778709 2.730000e-107 399.0
22 TraesCS2D01G139100 chr2B 90.541 74 7 0 1320 1393 133850226 133850153 1.120000e-16 99.0
23 TraesCS2D01G139100 chr2B 91.304 46 4 0 3918 3963 134780546 134780591 4.070000e-06 63.9
24 TraesCS2D01G139100 chr7D 90.764 314 20 5 1 306 633383971 633383659 1.260000e-110 411.0
25 TraesCS2D01G139100 chr7D 87.915 331 15 11 1 306 618375234 618375564 2.770000e-97 366.0
26 TraesCS2D01G139100 chr7D 77.419 372 81 3 2156 2525 578721247 578721617 8.210000e-53 219.0
27 TraesCS2D01G139100 chr7D 89.623 106 9 2 205 309 511939935 511940039 3.060000e-27 134.0
28 TraesCS2D01G139100 chr7A 89.506 324 17 4 1 309 177271252 177270931 1.270000e-105 394.0
29 TraesCS2D01G139100 chr7A 83.333 96 16 0 3241 3336 1462287 1462382 6.720000e-14 89.8
30 TraesCS2D01G139100 chr7A 89.796 49 4 1 1437 1485 699805397 699805350 1.460000e-05 62.1
31 TraesCS2D01G139100 chr5A 89.342 319 21 8 1 306 600473503 600473821 5.920000e-104 388.0
32 TraesCS2D01G139100 chr5A 93.182 44 3 0 1442 1485 662382237 662382194 1.130000e-06 65.8
33 TraesCS2D01G139100 chr5A 89.796 49 4 1 4176 4223 3387449 3387401 1.460000e-05 62.1
34 TraesCS2D01G139100 chr5A 90.909 44 3 1 1442 1485 611022616 611022658 1.890000e-04 58.4
35 TraesCS2D01G139100 chr1D 88.720 328 14 10 1 306 299573007 299573333 3.560000e-101 379.0
36 TraesCS2D01G139100 chr1D 87.688 333 16 5 1 309 201527668 201527337 9.970000e-97 364.0
37 TraesCS2D01G139100 chr1D 87.538 329 18 10 1 306 457153820 457153492 4.640000e-95 359.0
38 TraesCS2D01G139100 chr1D 84.337 332 22 13 1 310 124093067 124093390 1.030000e-76 298.0
39 TraesCS2D01G139100 chr6D 87.988 333 14 10 1 308 458332529 458332860 2.140000e-98 370.0
40 TraesCS2D01G139100 chr5D 87.349 332 15 10 1 306 80439397 80439067 6.000000e-94 355.0
41 TraesCS2D01G139100 chr5D 93.750 48 2 1 1442 1488 350804652 350804605 2.430000e-08 71.3
42 TraesCS2D01G139100 chr7B 77.151 372 82 3 2156 2525 642480137 642480507 3.820000e-51 213.0
43 TraesCS2D01G139100 chr7B 93.333 45 3 0 1425 1469 745254479 745254435 3.150000e-07 67.6
44 TraesCS2D01G139100 chr6A 79.394 330 23 16 1 308 473048503 473048197 1.790000e-44 191.0
45 TraesCS2D01G139100 chr4A 92.308 104 7 1 205 308 7346446 7346548 3.930000e-31 147.0
46 TraesCS2D01G139100 chr4A 89.423 104 11 0 205 308 666802847 666802950 1.100000e-26 132.0
47 TraesCS2D01G139100 chr4A 97.143 35 1 0 1454 1488 384826230 384826264 5.270000e-05 60.2
48 TraesCS2D01G139100 chr1B 86.420 81 10 1 4139 4219 616129593 616129672 2.420000e-13 87.9
49 TraesCS2D01G139100 chr1B 91.111 45 4 0 4176 4220 403544063 403544019 1.460000e-05 62.1
50 TraesCS2D01G139100 chr1B 91.111 45 4 0 1442 1486 486457614 486457658 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G139100 chr2D 82105728 82110601 4873 True 3058.933333 9001 100.000000 1 4874 3 chr2D.!!$R4 4873
1 TraesCS2D01G139100 chr2D 83101687 83103485 1798 False 1855.000000 1855 85.418000 2106 3916 1 chr2D.!!$F1 1810
2 TraesCS2D01G139100 chr2A 82209745 82213838 4093 True 1631.450000 5373 96.774750 593 4874 4 chr2A.!!$R3 4281
3 TraesCS2D01G139100 chr2A 83784107 83786018 1911 False 983.450000 1879 81.259000 2118 4101 2 chr2A.!!$F1 1983
4 TraesCS2D01G139100 chr2B 133846339 133851326 4987 True 1369.500000 2776 89.599000 306 4874 4 chr2B.!!$R1 4568
5 TraesCS2D01G139100 chr2B 134778341 134780591 2250 False 824.300000 2010 88.216333 1741 3963 3 chr2B.!!$F1 2222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.031585 GACCCAAACGGACAAAAGGC 59.968 55.000 0.00 0.00 34.64 4.35 F
690 703 0.092351 GTTGTCATGCCGTACGTTCG 59.908 55.000 15.21 7.68 0.00 3.95 F
1062 1101 0.107643 GGCCCTGCTCTATCTCAACC 59.892 60.000 0.00 0.00 0.00 3.77 F
1063 1102 0.249657 GCCCTGCTCTATCTCAACCG 60.250 60.000 0.00 0.00 0.00 4.44 F
1245 1284 0.389948 CCAAGACGCTGTCCAGGTAC 60.390 60.000 5.29 0.00 32.18 3.34 F
2048 2135 1.652012 CGGTTTGGCTTGCTTCGAA 59.348 52.632 0.00 0.00 0.00 3.71 F
3550 4102 1.362224 ACCACCACTAGGCACTCAAT 58.638 50.000 0.00 0.00 41.75 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1101 0.173708 GAGAGGAGTAGTTGCCACCG 59.826 60.000 0.0 0.00 0.00 4.94 R
2383 2920 0.958382 TGTCCTTGGCAATGGTACGC 60.958 55.000 0.0 0.00 0.00 4.42 R
2865 3413 1.474077 GACATTCCTCAATGGTGGCAC 59.526 52.381 9.7 9.70 43.47 5.01 R
2989 3539 5.295540 TCGGATTACATCGCATGAAAATCAA 59.704 36.000 0.0 10.75 37.63 2.57 R
3251 3803 6.239217 TCAGCTTCTTGGAGATAATAAGCA 57.761 37.500 0.0 0.00 40.30 3.91 R
3573 4128 2.198827 TCCCGCCCTGCATATTTATG 57.801 50.000 0.0 0.00 36.78 1.90 R
4776 5382 0.035343 CCCCTTCGGTTTCTTCTCCC 60.035 60.000 0.0 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.779755 TGTCGGCAACCAATAGATGT 57.220 45.000 0.00 0.00 0.00 3.06
21 22 3.897141 TGTCGGCAACCAATAGATGTA 57.103 42.857 0.00 0.00 0.00 2.29
22 23 4.415881 TGTCGGCAACCAATAGATGTAT 57.584 40.909 0.00 0.00 0.00 2.29
23 24 4.377021 TGTCGGCAACCAATAGATGTATC 58.623 43.478 0.00 0.00 0.00 2.24
24 25 4.100963 TGTCGGCAACCAATAGATGTATCT 59.899 41.667 0.00 0.00 40.86 1.98
25 26 5.057149 GTCGGCAACCAATAGATGTATCTT 58.943 41.667 0.00 0.00 38.32 2.40
26 27 5.177696 GTCGGCAACCAATAGATGTATCTTC 59.822 44.000 0.00 0.00 38.32 2.87
27 28 5.070446 TCGGCAACCAATAGATGTATCTTCT 59.930 40.000 0.00 0.00 38.32 2.85
28 29 5.760253 CGGCAACCAATAGATGTATCTTCTT 59.240 40.000 0.00 0.00 38.32 2.52
29 30 6.260936 CGGCAACCAATAGATGTATCTTCTTT 59.739 38.462 0.00 0.00 38.32 2.52
30 31 7.201732 CGGCAACCAATAGATGTATCTTCTTTT 60.202 37.037 0.00 0.00 38.32 2.27
31 32 9.120538 GGCAACCAATAGATGTATCTTCTTTTA 57.879 33.333 0.00 0.00 38.32 1.52
41 42 8.946085 AGATGTATCTTCTTTTATTCGTTTGCA 58.054 29.630 0.00 0.00 31.97 4.08
42 43 9.554724 GATGTATCTTCTTTTATTCGTTTGCAA 57.445 29.630 0.00 0.00 0.00 4.08
43 44 9.906660 ATGTATCTTCTTTTATTCGTTTGCAAA 57.093 25.926 8.05 8.05 0.00 3.68
44 45 9.737427 TGTATCTTCTTTTATTCGTTTGCAAAA 57.263 25.926 14.67 0.00 0.00 2.44
45 46 9.989394 GTATCTTCTTTTATTCGTTTGCAAAAC 57.011 29.630 14.67 7.51 0.00 2.43
46 47 8.871686 ATCTTCTTTTATTCGTTTGCAAAACT 57.128 26.923 14.67 1.52 0.00 2.66
47 48 9.959749 ATCTTCTTTTATTCGTTTGCAAAACTA 57.040 25.926 14.67 2.05 0.00 2.24
48 49 9.959749 TCTTCTTTTATTCGTTTGCAAAACTAT 57.040 25.926 14.67 9.56 0.00 2.12
49 50 9.993881 CTTCTTTTATTCGTTTGCAAAACTATG 57.006 29.630 14.67 0.00 0.00 2.23
50 51 9.522804 TTCTTTTATTCGTTTGCAAAACTATGT 57.477 25.926 14.67 1.14 0.00 2.29
51 52 8.963130 TCTTTTATTCGTTTGCAAAACTATGTG 58.037 29.630 14.67 0.46 0.00 3.21
52 53 8.858003 TTTTATTCGTTTGCAAAACTATGTGA 57.142 26.923 14.67 0.94 0.00 3.58
53 54 8.858003 TTTATTCGTTTGCAAAACTATGTGAA 57.142 26.923 14.67 9.56 0.00 3.18
54 55 8.858003 TTATTCGTTTGCAAAACTATGTGAAA 57.142 26.923 14.67 0.00 0.00 2.69
55 56 6.561945 TTCGTTTGCAAAACTATGTGAAAC 57.438 33.333 14.67 0.00 37.35 2.78
104 105 6.812879 AACTATACTATTTATTTGGGCGGC 57.187 37.500 0.00 0.00 0.00 6.53
105 106 5.250982 ACTATACTATTTATTTGGGCGGCC 58.749 41.667 23.42 23.42 0.00 6.13
106 107 2.445682 ACTATTTATTTGGGCGGCCA 57.554 45.000 29.27 29.27 0.00 5.36
107 108 2.306847 ACTATTTATTTGGGCGGCCAG 58.693 47.619 30.86 18.62 0.00 4.85
108 109 2.092103 ACTATTTATTTGGGCGGCCAGA 60.092 45.455 30.86 27.38 0.00 3.86
109 110 1.111277 ATTTATTTGGGCGGCCAGAC 58.889 50.000 30.86 3.00 0.00 3.51
110 111 0.039035 TTTATTTGGGCGGCCAGACT 59.961 50.000 30.86 20.46 0.00 3.24
111 112 0.913205 TTATTTGGGCGGCCAGACTA 59.087 50.000 30.86 19.45 0.00 2.59
112 113 1.136828 TATTTGGGCGGCCAGACTAT 58.863 50.000 30.86 22.43 0.00 2.12
113 114 0.258774 ATTTGGGCGGCCAGACTATT 59.741 50.000 30.86 8.79 0.00 1.73
114 115 0.039035 TTTGGGCGGCCAGACTATTT 59.961 50.000 30.86 0.00 0.00 1.40
115 116 0.679640 TTGGGCGGCCAGACTATTTG 60.680 55.000 30.86 0.00 0.00 2.32
116 117 1.823899 GGGCGGCCAGACTATTTGG 60.824 63.158 25.33 0.00 38.78 3.28
126 127 5.957842 CCAGACTATTTGGCTTGTTAACA 57.042 39.130 3.59 3.59 0.00 2.41
127 128 6.515272 CCAGACTATTTGGCTTGTTAACAT 57.485 37.500 9.56 0.00 0.00 2.71
128 129 6.924111 CCAGACTATTTGGCTTGTTAACATT 58.076 36.000 9.56 0.00 0.00 2.71
129 130 7.378181 CCAGACTATTTGGCTTGTTAACATTT 58.622 34.615 9.56 0.00 0.00 2.32
130 131 7.872483 CCAGACTATTTGGCTTGTTAACATTTT 59.128 33.333 9.56 0.00 0.00 1.82
131 132 8.915654 CAGACTATTTGGCTTGTTAACATTTTC 58.084 33.333 9.56 0.91 0.00 2.29
132 133 8.637986 AGACTATTTGGCTTGTTAACATTTTCA 58.362 29.630 9.56 3.52 0.00 2.69
133 134 9.423061 GACTATTTGGCTTGTTAACATTTTCAT 57.577 29.630 9.56 1.13 0.00 2.57
134 135 9.777297 ACTATTTGGCTTGTTAACATTTTCATT 57.223 25.926 9.56 0.00 0.00 2.57
137 138 8.498054 TTTGGCTTGTTAACATTTTCATTTGA 57.502 26.923 9.56 0.00 0.00 2.69
138 139 7.475771 TGGCTTGTTAACATTTTCATTTGAC 57.524 32.000 9.56 0.00 0.00 3.18
139 140 7.044181 TGGCTTGTTAACATTTTCATTTGACA 58.956 30.769 9.56 0.00 0.00 3.58
140 141 7.550551 TGGCTTGTTAACATTTTCATTTGACAA 59.449 29.630 9.56 0.00 0.00 3.18
141 142 8.558700 GGCTTGTTAACATTTTCATTTGACAAT 58.441 29.630 9.56 0.00 0.00 2.71
153 154 8.828688 TTTCATTTGACAATATGTTGAATGCA 57.171 26.923 9.40 0.00 38.71 3.96
154 155 8.828688 TTCATTTGACAATATGTTGAATGCAA 57.171 26.923 9.40 5.14 38.71 4.08
155 156 8.828688 TCATTTGACAATATGTTGAATGCAAA 57.171 26.923 9.40 12.45 38.71 3.68
156 157 9.438228 TCATTTGACAATATGTTGAATGCAAAT 57.562 25.926 9.40 13.82 38.71 2.32
157 158 9.697250 CATTTGACAATATGTTGAATGCAAATC 57.303 29.630 9.40 0.00 38.71 2.17
158 159 8.828688 TTTGACAATATGTTGAATGCAAATCA 57.171 26.923 9.40 0.00 38.71 2.57
159 160 9.438228 TTTGACAATATGTTGAATGCAAATCAT 57.562 25.926 9.40 0.00 38.71 2.45
160 161 8.413899 TGACAATATGTTGAATGCAAATCATG 57.586 30.769 9.40 4.05 38.71 3.07
161 162 8.035984 TGACAATATGTTGAATGCAAATCATGT 58.964 29.630 9.40 6.77 38.71 3.21
162 163 9.518906 GACAATATGTTGAATGCAAATCATGTA 57.481 29.630 9.40 2.10 38.71 2.29
163 164 9.872721 ACAATATGTTGAATGCAAATCATGTAA 57.127 25.926 9.40 0.00 38.71 2.41
169 170 8.504815 TGTTGAATGCAAATCATGTAAAATTGG 58.495 29.630 6.41 0.00 35.42 3.16
170 171 7.612668 TGAATGCAAATCATGTAAAATTGGG 57.387 32.000 0.00 0.00 35.13 4.12
171 172 6.093771 TGAATGCAAATCATGTAAAATTGGGC 59.906 34.615 0.00 0.00 35.13 5.36
172 173 3.931468 TGCAAATCATGTAAAATTGGGCG 59.069 39.130 0.00 0.00 0.00 6.13
173 174 3.309410 GCAAATCATGTAAAATTGGGCGG 59.691 43.478 0.00 0.00 0.00 6.13
174 175 2.888834 ATCATGTAAAATTGGGCGGC 57.111 45.000 0.00 0.00 0.00 6.53
175 176 0.820871 TCATGTAAAATTGGGCGGCC 59.179 50.000 23.42 23.42 0.00 6.13
176 177 0.527385 CATGTAAAATTGGGCGGCCG 60.527 55.000 24.05 24.05 0.00 6.13
177 178 1.671901 ATGTAAAATTGGGCGGCCGG 61.672 55.000 29.38 8.95 0.00 6.13
178 179 3.453679 TAAAATTGGGCGGCCGGC 61.454 61.111 41.10 41.10 42.51 6.13
192 193 4.562425 CGGCCGGCACATATGGGT 62.562 66.667 30.85 0.00 0.00 4.51
193 194 2.594592 GGCCGGCACATATGGGTC 60.595 66.667 30.85 2.41 0.00 4.46
196 197 2.972505 CGGCACATATGGGTCGGC 60.973 66.667 24.11 11.40 43.82 5.54
197 198 2.191908 GGCACATATGGGTCGGCA 59.808 61.111 6.86 0.00 0.00 5.69
198 199 1.893808 GGCACATATGGGTCGGCAG 60.894 63.158 6.86 0.00 0.00 4.85
199 200 2.546494 GCACATATGGGTCGGCAGC 61.546 63.158 6.86 0.00 0.00 5.25
200 201 2.108976 ACATATGGGTCGGCAGCG 59.891 61.111 7.80 0.00 0.00 5.18
201 202 2.108976 CATATGGGTCGGCAGCGT 59.891 61.111 0.00 0.00 0.00 5.07
202 203 1.523711 CATATGGGTCGGCAGCGTT 60.524 57.895 0.00 0.00 0.00 4.84
203 204 1.523711 ATATGGGTCGGCAGCGTTG 60.524 57.895 0.00 0.00 0.00 4.10
214 215 2.276472 GCAGCGTTGCCATATCAAAA 57.724 45.000 13.92 0.00 44.74 2.44
215 216 2.605030 GCAGCGTTGCCATATCAAAAA 58.395 42.857 13.92 0.00 44.74 1.94
216 217 3.189285 GCAGCGTTGCCATATCAAAAAT 58.811 40.909 13.92 0.00 44.74 1.82
217 218 4.358851 GCAGCGTTGCCATATCAAAAATA 58.641 39.130 13.92 0.00 44.74 1.40
218 219 4.442073 GCAGCGTTGCCATATCAAAAATAG 59.558 41.667 13.92 0.00 44.74 1.73
219 220 4.977963 CAGCGTTGCCATATCAAAAATAGG 59.022 41.667 0.00 0.00 0.00 2.57
220 221 4.037923 AGCGTTGCCATATCAAAAATAGGG 59.962 41.667 0.00 0.00 0.00 3.53
223 224 3.575965 GCCATATCAAAAATAGGGCGG 57.424 47.619 5.12 0.00 40.84 6.13
224 225 3.153919 GCCATATCAAAAATAGGGCGGA 58.846 45.455 5.12 0.00 40.84 5.54
225 226 3.057526 GCCATATCAAAAATAGGGCGGAC 60.058 47.826 5.12 0.00 40.84 4.79
226 227 3.188460 CCATATCAAAAATAGGGCGGACG 59.812 47.826 0.00 0.00 0.00 4.79
227 228 1.675552 ATCAAAAATAGGGCGGACGG 58.324 50.000 0.00 0.00 0.00 4.79
228 229 1.027792 TCAAAAATAGGGCGGACGGC 61.028 55.000 9.97 9.97 42.51 5.68
229 230 2.110352 AAAAATAGGGCGGACGGCG 61.110 57.895 4.80 4.80 44.92 6.46
230 231 4.540735 AAATAGGGCGGACGGCGG 62.541 66.667 13.24 0.00 44.92 6.13
258 259 3.837669 CGACCCAAACGGACAAAAG 57.162 52.632 0.00 0.00 34.64 2.27
259 260 0.309612 CGACCCAAACGGACAAAAGG 59.690 55.000 0.00 0.00 34.64 3.11
260 261 0.031585 GACCCAAACGGACAAAAGGC 59.968 55.000 0.00 0.00 34.64 4.35
261 262 1.007849 CCCAAACGGACAAAAGGCG 60.008 57.895 0.00 0.00 0.00 5.52
262 263 1.007849 CCAAACGGACAAAAGGCGG 60.008 57.895 0.00 0.00 0.00 6.13
263 264 1.448922 CCAAACGGACAAAAGGCGGA 61.449 55.000 0.00 0.00 0.00 5.54
264 265 0.596082 CAAACGGACAAAAGGCGGAT 59.404 50.000 0.00 0.00 0.00 4.18
265 266 1.807742 CAAACGGACAAAAGGCGGATA 59.192 47.619 0.00 0.00 0.00 2.59
266 267 2.188062 AACGGACAAAAGGCGGATAA 57.812 45.000 0.00 0.00 0.00 1.75
267 268 2.188062 ACGGACAAAAGGCGGATAAA 57.812 45.000 0.00 0.00 0.00 1.40
268 269 2.506444 ACGGACAAAAGGCGGATAAAA 58.494 42.857 0.00 0.00 0.00 1.52
269 270 3.086282 ACGGACAAAAGGCGGATAAAAT 58.914 40.909 0.00 0.00 0.00 1.82
270 271 3.128068 ACGGACAAAAGGCGGATAAAATC 59.872 43.478 0.00 0.00 0.00 2.17
271 272 3.691498 GGACAAAAGGCGGATAAAATCG 58.309 45.455 0.00 0.00 0.00 3.34
277 278 1.568025 GCGGATAAAATCGCCGTCC 59.432 57.895 0.00 0.00 46.38 4.79
278 279 1.850640 CGGATAAAATCGCCGTCCG 59.149 57.895 0.00 0.00 44.72 4.79
279 280 0.872881 CGGATAAAATCGCCGTCCGT 60.873 55.000 3.70 0.00 44.94 4.69
280 281 1.292992 GGATAAAATCGCCGTCCGTT 58.707 50.000 0.00 0.00 38.35 4.44
281 282 1.667212 GGATAAAATCGCCGTCCGTTT 59.333 47.619 0.00 0.00 38.35 3.60
282 283 2.538132 GGATAAAATCGCCGTCCGTTTG 60.538 50.000 0.00 0.00 38.35 2.93
283 284 0.797542 TAAAATCGCCGTCCGTTTGG 59.202 50.000 0.00 0.00 38.35 3.28
284 285 1.858372 AAAATCGCCGTCCGTTTGGG 61.858 55.000 0.00 0.00 38.35 4.12
285 286 3.540367 AATCGCCGTCCGTTTGGGT 62.540 57.895 0.00 0.00 38.35 4.51
286 287 3.945304 ATCGCCGTCCGTTTGGGTC 62.945 63.158 0.00 0.00 38.35 4.46
287 288 4.973055 CGCCGTCCGTTTGGGTCA 62.973 66.667 0.00 0.00 37.00 4.02
288 289 3.047877 GCCGTCCGTTTGGGTCAG 61.048 66.667 0.00 0.00 37.00 3.51
289 290 3.047877 CCGTCCGTTTGGGTCAGC 61.048 66.667 0.00 0.00 37.00 4.26
290 291 3.047877 CGTCCGTTTGGGTCAGCC 61.048 66.667 0.00 0.00 37.00 4.85
299 300 3.637273 GGGTCAGCCCGTTGGAGT 61.637 66.667 0.00 0.00 46.51 3.85
300 301 2.430367 GGTCAGCCCGTTGGAGTT 59.570 61.111 0.00 0.00 0.00 3.01
301 302 1.966451 GGTCAGCCCGTTGGAGTTG 60.966 63.158 0.00 0.00 0.00 3.16
302 303 2.281484 TCAGCCCGTTGGAGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
303 304 2.281761 CAGCCCGTTGGAGTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
304 305 2.032681 AGCCCGTTGGAGTTGCTC 59.967 61.111 0.00 0.00 0.00 4.26
311 312 2.550208 CCGTTGGAGTTGCTCTAAGGTT 60.550 50.000 11.77 0.00 35.91 3.50
353 354 2.785258 GCGCACTTTGACGGATCC 59.215 61.111 0.30 0.00 0.00 3.36
354 355 2.032634 GCGCACTTTGACGGATCCA 61.033 57.895 13.41 0.00 0.00 3.41
355 356 1.369091 GCGCACTTTGACGGATCCAT 61.369 55.000 13.41 0.00 0.00 3.41
356 357 0.652592 CGCACTTTGACGGATCCATC 59.347 55.000 13.41 6.74 0.00 3.51
357 358 1.737838 GCACTTTGACGGATCCATCA 58.262 50.000 6.38 6.38 0.00 3.07
358 359 2.292267 GCACTTTGACGGATCCATCAT 58.708 47.619 12.03 0.00 0.00 2.45
360 361 2.615447 CACTTTGACGGATCCATCATGG 59.385 50.000 12.03 9.83 39.43 3.66
361 362 2.224606 CTTTGACGGATCCATCATGGG 58.775 52.381 12.03 1.30 38.32 4.00
368 369 0.825010 GATCCATCATGGGGTGTGGC 60.825 60.000 3.05 0.00 38.32 5.01
371 372 2.114670 CATCATGGGGTGTGGCGTC 61.115 63.158 0.00 0.00 0.00 5.19
372 373 2.300967 ATCATGGGGTGTGGCGTCT 61.301 57.895 0.00 0.00 0.00 4.18
374 375 4.082523 ATGGGGTGTGGCGTCTCG 62.083 66.667 0.00 0.00 0.00 4.04
398 399 0.667993 TCCAAAAGAACTTGCTGGCG 59.332 50.000 9.65 0.00 0.00 5.69
416 417 1.809619 GTGTCTTGCCTATCGCGCA 60.810 57.895 8.75 0.00 42.08 6.09
426 427 0.528466 CTATCGCGCAAGGCTTCTCA 60.528 55.000 8.75 0.00 40.44 3.27
442 443 3.213206 TCTCAGGCAACATTGTCTTGT 57.787 42.857 0.00 0.00 40.96 3.16
445 446 3.814625 TCAGGCAACATTGTCTTGTGTA 58.185 40.909 0.00 0.00 40.96 2.90
448 449 2.350388 GGCAACATTGTCTTGTGTACCG 60.350 50.000 0.00 0.00 0.00 4.02
449 450 2.289547 GCAACATTGTCTTGTGTACCGT 59.710 45.455 0.00 0.00 0.00 4.83
450 451 3.242936 GCAACATTGTCTTGTGTACCGTT 60.243 43.478 0.00 0.00 0.00 4.44
454 455 2.410785 TGTCTTGTGTACCGTTCTCG 57.589 50.000 0.00 0.00 0.00 4.04
455 456 1.948834 TGTCTTGTGTACCGTTCTCGA 59.051 47.619 0.00 0.00 39.71 4.04
459 460 2.624316 TGTGTACCGTTCTCGATGTC 57.376 50.000 0.00 0.00 39.71 3.06
460 461 1.881324 TGTGTACCGTTCTCGATGTCA 59.119 47.619 0.00 0.00 39.71 3.58
464 465 0.898789 ACCGTTCTCGATGTCAGGGT 60.899 55.000 0.00 0.00 39.71 4.34
468 469 3.116300 CGTTCTCGATGTCAGGGTTATG 58.884 50.000 0.00 0.00 39.71 1.90
481 482 3.751175 CAGGGTTATGTGATGACGTGTTT 59.249 43.478 0.00 0.00 0.00 2.83
482 483 3.751175 AGGGTTATGTGATGACGTGTTTG 59.249 43.478 0.00 0.00 0.00 2.93
487 488 1.063321 TGTGATGACGTGTTTGTGTGC 59.937 47.619 0.00 0.00 0.00 4.57
490 491 0.581529 ATGACGTGTTTGTGTGCGAG 59.418 50.000 0.00 0.00 0.00 5.03
498 499 2.356069 TGTTTGTGTGCGAGCAATGTTA 59.644 40.909 0.00 0.00 0.00 2.41
499 500 2.679355 TTGTGTGCGAGCAATGTTAC 57.321 45.000 0.00 0.00 0.00 2.50
500 501 0.510790 TGTGTGCGAGCAATGTTACG 59.489 50.000 0.00 0.00 0.00 3.18
534 535 8.660373 CCACAGTTTTGTTTTTGCAAAGTAATA 58.340 29.630 12.41 0.43 39.20 0.98
535 536 9.471742 CACAGTTTTGTTTTTGCAAAGTAATAC 57.528 29.630 12.41 12.75 39.20 1.89
545 546 7.710676 TTTGCAAAGTAATACACATGGGTAT 57.289 32.000 15.09 15.09 35.53 2.73
547 548 7.328277 TGCAAAGTAATACACATGGGTATTC 57.672 36.000 31.60 22.86 41.68 1.75
571 572 4.201647 CGATTACGGTGGAAATGTGTACAC 60.202 45.833 19.36 19.36 35.72 2.90
578 579 1.808343 GGAAATGTGTACACGGTTCCC 59.192 52.381 31.67 20.22 39.25 3.97
579 580 2.496111 GAAATGTGTACACGGTTCCCA 58.504 47.619 20.61 1.98 0.00 4.37
652 665 1.133598 TGTGTCGCTATACTTGGTCCG 59.866 52.381 0.00 0.00 0.00 4.79
653 666 1.133790 GTGTCGCTATACTTGGTCCGT 59.866 52.381 0.00 0.00 0.00 4.69
654 667 1.402968 TGTCGCTATACTTGGTCCGTC 59.597 52.381 0.00 0.00 0.00 4.79
655 668 1.027357 TCGCTATACTTGGTCCGTCC 58.973 55.000 0.00 0.00 0.00 4.79
675 688 3.000815 GTCATGGTGACACCGTTGT 57.999 52.632 17.05 1.28 46.22 3.32
690 703 0.092351 GTTGTCATGCCGTACGTTCG 59.908 55.000 15.21 7.68 0.00 3.95
733 746 8.723942 ATTATAGTAGAAAACCAAGCTGACAG 57.276 34.615 0.00 0.00 0.00 3.51
740 753 2.659016 CAAGCTGACAGCCCGAGA 59.341 61.111 23.74 0.00 43.77 4.04
836 850 1.656587 TTGGCCCTCAGATAGTGTGT 58.343 50.000 0.00 0.00 0.00 3.72
837 851 0.904649 TGGCCCTCAGATAGTGTGTG 59.095 55.000 0.00 0.00 0.00 3.82
838 852 0.905357 GGCCCTCAGATAGTGTGTGT 59.095 55.000 0.00 0.00 0.00 3.72
839 853 1.406069 GGCCCTCAGATAGTGTGTGTG 60.406 57.143 0.00 0.00 0.00 3.82
987 1026 4.827692 TCACAAGTCACAACTAACACAGT 58.172 39.130 0.00 0.00 40.05 3.55
1044 1083 0.531532 CGGCAATCCTACTCAGCAGG 60.532 60.000 0.00 0.00 34.20 4.85
1059 1098 2.831859 CAGGCCCTGCTCTATCTCA 58.168 57.895 0.00 0.00 0.00 3.27
1060 1099 1.126488 CAGGCCCTGCTCTATCTCAA 58.874 55.000 0.00 0.00 0.00 3.02
1062 1101 0.107643 GGCCCTGCTCTATCTCAACC 59.892 60.000 0.00 0.00 0.00 3.77
1063 1102 0.249657 GCCCTGCTCTATCTCAACCG 60.250 60.000 0.00 0.00 0.00 4.44
1064 1103 0.390860 CCCTGCTCTATCTCAACCGG 59.609 60.000 0.00 0.00 0.00 5.28
1065 1104 1.115467 CCTGCTCTATCTCAACCGGT 58.885 55.000 0.00 0.00 0.00 5.28
1066 1105 1.202463 CCTGCTCTATCTCAACCGGTG 60.202 57.143 8.52 2.16 0.00 4.94
1067 1106 0.824109 TGCTCTATCTCAACCGGTGG 59.176 55.000 8.52 4.63 0.00 4.61
1068 1107 0.530870 GCTCTATCTCAACCGGTGGC 60.531 60.000 8.52 0.00 0.00 5.01
1069 1108 0.824109 CTCTATCTCAACCGGTGGCA 59.176 55.000 8.52 0.00 0.00 4.92
1070 1109 1.207089 CTCTATCTCAACCGGTGGCAA 59.793 52.381 8.52 0.00 0.00 4.52
1105 1144 1.609501 CCTCTCCAACCGTCTCCCA 60.610 63.158 0.00 0.00 0.00 4.37
1152 1191 2.509336 CCTGCCACGGAAGCTACG 60.509 66.667 8.96 8.96 37.36 3.51
1242 1281 2.046892 CCCAAGACGCTGTCCAGG 60.047 66.667 5.29 7.31 32.18 4.45
1245 1284 0.389948 CCAAGACGCTGTCCAGGTAC 60.390 60.000 5.29 0.00 32.18 3.34
1319 1360 4.321718 CAGGTATACGCTAGTGCTACCTA 58.678 47.826 26.03 5.67 42.94 3.08
1326 1367 9.102757 GTATACGCTAGTGCTACCTATACATAA 57.897 37.037 2.40 0.00 36.97 1.90
1330 1371 8.027771 ACGCTAGTGCTACCTATACATAAAATC 58.972 37.037 2.40 0.00 36.97 2.17
1365 1406 5.917087 TCCTAATCCATACTCCCTCCATTTT 59.083 40.000 0.00 0.00 0.00 1.82
1384 1425 7.920151 TCCATTTTCAAATATATGACGCTTTGG 59.080 33.333 0.00 0.00 31.20 3.28
1532 1609 6.485648 ACCACTAACCAAGATACTTGTTTCAC 59.514 38.462 9.99 0.00 0.00 3.18
1533 1610 6.072673 CCACTAACCAAGATACTTGTTTCACC 60.073 42.308 9.99 0.00 0.00 4.02
1534 1611 6.002082 ACTAACCAAGATACTTGTTTCACCC 58.998 40.000 9.99 0.00 0.00 4.61
1535 1612 3.408634 ACCAAGATACTTGTTTCACCCG 58.591 45.455 9.99 0.00 0.00 5.28
1536 1613 2.161609 CCAAGATACTTGTTTCACCCGC 59.838 50.000 9.99 0.00 0.00 6.13
1537 1614 2.811431 CAAGATACTTGTTTCACCCGCA 59.189 45.455 0.00 0.00 0.00 5.69
1538 1615 3.134574 AGATACTTGTTTCACCCGCAA 57.865 42.857 0.00 0.00 0.00 4.85
1539 1616 3.482436 AGATACTTGTTTCACCCGCAAA 58.518 40.909 0.00 0.00 0.00 3.68
1540 1617 3.886505 AGATACTTGTTTCACCCGCAAAA 59.113 39.130 0.00 0.00 0.00 2.44
1541 1618 4.339814 AGATACTTGTTTCACCCGCAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
1645 1728 6.364261 CGTCGTGTCTAGTAGATATTTCTGG 58.636 44.000 2.51 0.00 33.17 3.86
1733 1818 7.637511 AGTATTCCTGAAAAATCTGATCCACT 58.362 34.615 0.00 0.00 0.00 4.00
1736 1821 4.460382 TCCTGAAAAATCTGATCCACTTGC 59.540 41.667 0.00 0.00 0.00 4.01
1737 1822 4.461781 CCTGAAAAATCTGATCCACTTGCT 59.538 41.667 0.00 0.00 0.00 3.91
1738 1823 5.047519 CCTGAAAAATCTGATCCACTTGCTT 60.048 40.000 0.00 0.00 0.00 3.91
1739 1824 6.151648 CCTGAAAAATCTGATCCACTTGCTTA 59.848 38.462 0.00 0.00 0.00 3.09
1802 1889 4.585581 AGCTAATTAATCCATGCATGCACA 59.414 37.500 25.37 10.62 0.00 4.57
1844 1931 4.650754 AAATGGATGATTGCAAGAGCTC 57.349 40.909 5.27 5.27 42.74 4.09
1942 2029 2.163010 TGTCCAACGTCTCGGAATAGAC 59.837 50.000 3.13 0.00 42.09 2.59
1986 2073 7.581600 GGTTGATATCGCGTTAAGTCAAATTAC 59.418 37.037 5.77 0.00 0.00 1.89
2048 2135 1.652012 CGGTTTGGCTTGCTTCGAA 59.348 52.632 0.00 0.00 0.00 3.71
2069 2156 2.276732 ACATGGTCTTTGGGTGTCTG 57.723 50.000 0.00 0.00 0.00 3.51
2383 2920 1.662026 GCAAGTTAAACGTGCCCTTCG 60.662 52.381 0.00 0.00 45.63 3.79
2572 3109 9.478768 TGTCTTCGTTATACTCAATTACACAAA 57.521 29.630 0.00 0.00 0.00 2.83
2582 3119 7.678947 ACTCAATTACACAAAGAAGATGGAG 57.321 36.000 0.00 0.00 0.00 3.86
2712 3260 2.165301 GGTGGCGCGATCTGTACAC 61.165 63.158 12.10 6.22 0.00 2.90
2865 3413 2.079158 GGATGACACATATGATGCCCG 58.921 52.381 10.38 0.00 0.00 6.13
2900 3448 3.369756 GGAATGTCGACAACTAAATGCGA 59.630 43.478 24.13 0.00 0.00 5.10
2924 3473 6.941857 ACCATACAAAGGTTTGAAAGTTTGT 58.058 32.000 17.43 17.43 43.65 2.83
2966 3516 6.284475 TGCAAAAACTAACATGCAATCAAC 57.716 33.333 0.00 0.00 45.04 3.18
3251 3803 6.291648 TCTATGCAGTTTCAAGATCTGTCT 57.708 37.500 0.00 0.00 35.82 3.41
3550 4102 1.362224 ACCACCACTAGGCACTCAAT 58.638 50.000 0.00 0.00 41.75 2.57
4144 4710 4.072131 CTCTCTCTCTCTTAATCCCTCCG 58.928 52.174 0.00 0.00 0.00 4.63
4166 4738 7.309177 TCCGTTCCAAAATATGTGTTGTTATG 58.691 34.615 0.00 0.00 0.00 1.90
4248 4820 2.812358 ATTTCACAAAAACCGCCCTC 57.188 45.000 0.00 0.00 0.00 4.30
4250 4822 1.770294 TTCACAAAAACCGCCCTCTT 58.230 45.000 0.00 0.00 0.00 2.85
4251 4823 1.770294 TCACAAAAACCGCCCTCTTT 58.230 45.000 0.00 0.00 0.00 2.52
4283 4855 2.883122 ACGGCCAAAACCCAACTATA 57.117 45.000 2.24 0.00 0.00 1.31
4284 4856 3.375647 ACGGCCAAAACCCAACTATAT 57.624 42.857 2.24 0.00 0.00 0.86
4285 4857 4.506937 ACGGCCAAAACCCAACTATATA 57.493 40.909 2.24 0.00 0.00 0.86
4286 4858 5.056553 ACGGCCAAAACCCAACTATATAT 57.943 39.130 2.24 0.00 0.00 0.86
4525 5131 5.300792 GGAAGGATACAAGAAACCAAACACA 59.699 40.000 0.00 0.00 41.41 3.72
4648 5254 6.500684 AAATTGCGTACACAGAAATCTCAT 57.499 33.333 0.00 0.00 0.00 2.90
4652 5258 5.927030 TGCGTACACAGAAATCTCATTTTC 58.073 37.500 0.00 0.00 36.13 2.29
4684 5290 0.750249 TCTGAGTGCCAACAAGTCGA 59.250 50.000 0.00 0.00 0.00 4.20
4715 5321 6.250104 CACTTAGTAAAGCTTTCGGTACTACG 59.750 42.308 16.57 16.28 36.05 3.51
4727 5333 2.159198 CGGTACTACGTGCCAATAAGGT 60.159 50.000 0.00 0.00 38.20 3.50
4743 5349 0.536460 AGGTAACAAGTGGGCAACGG 60.536 55.000 0.00 0.00 41.41 4.44
4752 5358 0.958822 GTGGGCAACGGATCAACTTT 59.041 50.000 0.00 0.00 37.60 2.66
4756 5362 1.792367 GGCAACGGATCAACTTTTTGC 59.208 47.619 0.00 0.00 38.87 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.281727 ACATCTATTGGTTGCCGACAT 57.718 42.857 0.00 0.00 0.00 3.06
1 2 2.779755 ACATCTATTGGTTGCCGACA 57.220 45.000 0.00 0.00 0.00 4.35
2 3 4.632153 AGATACATCTATTGGTTGCCGAC 58.368 43.478 0.00 0.00 34.85 4.79
3 4 4.955811 AGATACATCTATTGGTTGCCGA 57.044 40.909 0.00 0.00 34.85 5.54
4 5 5.300752 AGAAGATACATCTATTGGTTGCCG 58.699 41.667 0.00 0.00 35.76 5.69
5 6 7.573968 AAAGAAGATACATCTATTGGTTGCC 57.426 36.000 0.00 0.00 35.76 4.52
15 16 8.946085 TGCAAACGAATAAAAGAAGATACATCT 58.054 29.630 0.00 0.00 39.22 2.90
16 17 9.554724 TTGCAAACGAATAAAAGAAGATACATC 57.445 29.630 0.00 0.00 0.00 3.06
17 18 9.906660 TTTGCAAACGAATAAAAGAAGATACAT 57.093 25.926 8.05 0.00 0.00 2.29
18 19 9.737427 TTTTGCAAACGAATAAAAGAAGATACA 57.263 25.926 12.39 0.00 0.00 2.29
19 20 9.989394 GTTTTGCAAACGAATAAAAGAAGATAC 57.011 29.630 12.39 0.00 0.00 2.24
20 21 9.959749 AGTTTTGCAAACGAATAAAAGAAGATA 57.040 25.926 12.39 0.00 0.00 1.98
21 22 8.871686 AGTTTTGCAAACGAATAAAAGAAGAT 57.128 26.923 12.39 0.00 0.00 2.40
22 23 9.959749 ATAGTTTTGCAAACGAATAAAAGAAGA 57.040 25.926 12.39 0.00 0.00 2.87
23 24 9.993881 CATAGTTTTGCAAACGAATAAAAGAAG 57.006 29.630 12.39 0.00 0.00 2.85
24 25 9.522804 ACATAGTTTTGCAAACGAATAAAAGAA 57.477 25.926 12.39 0.00 0.00 2.52
25 26 8.963130 CACATAGTTTTGCAAACGAATAAAAGA 58.037 29.630 12.39 0.00 0.00 2.52
26 27 8.963130 TCACATAGTTTTGCAAACGAATAAAAG 58.037 29.630 12.39 0.31 0.00 2.27
27 28 8.858003 TCACATAGTTTTGCAAACGAATAAAA 57.142 26.923 12.39 0.00 0.00 1.52
28 29 8.858003 TTCACATAGTTTTGCAAACGAATAAA 57.142 26.923 12.39 0.00 0.00 1.40
29 30 8.747666 GTTTCACATAGTTTTGCAAACGAATAA 58.252 29.630 12.39 0.00 0.00 1.40
30 31 7.915923 TGTTTCACATAGTTTTGCAAACGAATA 59.084 29.630 12.39 2.21 0.00 1.75
31 32 6.754209 TGTTTCACATAGTTTTGCAAACGAAT 59.246 30.769 12.39 0.00 0.00 3.34
32 33 6.093404 TGTTTCACATAGTTTTGCAAACGAA 58.907 32.000 12.39 0.00 0.00 3.85
33 34 5.641709 TGTTTCACATAGTTTTGCAAACGA 58.358 33.333 12.39 4.34 0.00 3.85
34 35 5.940603 TGTTTCACATAGTTTTGCAAACG 57.059 34.783 12.39 0.96 0.00 3.60
35 36 9.553418 AAAAATGTTTCACATAGTTTTGCAAAC 57.447 25.926 12.39 7.48 37.97 2.93
78 79 8.785946 GCCGCCCAAATAAATAGTATAGTTTTA 58.214 33.333 0.00 0.00 28.73 1.52
79 80 7.255695 GGCCGCCCAAATAAATAGTATAGTTTT 60.256 37.037 0.00 0.00 28.73 2.43
80 81 6.208007 GGCCGCCCAAATAAATAGTATAGTTT 59.792 38.462 0.00 0.00 28.73 2.66
81 82 5.708697 GGCCGCCCAAATAAATAGTATAGTT 59.291 40.000 0.00 0.00 31.73 2.24
82 83 5.221966 TGGCCGCCCAAATAAATAGTATAGT 60.222 40.000 7.03 0.00 38.46 2.12
83 84 5.250200 TGGCCGCCCAAATAAATAGTATAG 58.750 41.667 7.03 0.00 38.46 1.31
84 85 5.013287 TCTGGCCGCCCAAATAAATAGTATA 59.987 40.000 7.03 0.00 41.58 1.47
85 86 4.079253 CTGGCCGCCCAAATAAATAGTAT 58.921 43.478 7.03 0.00 41.58 2.12
86 87 3.136809 TCTGGCCGCCCAAATAAATAGTA 59.863 43.478 7.03 0.00 41.58 1.82
87 88 2.092103 TCTGGCCGCCCAAATAAATAGT 60.092 45.455 7.03 0.00 41.58 2.12
88 89 2.293399 GTCTGGCCGCCCAAATAAATAG 59.707 50.000 7.03 0.00 41.58 1.73
89 90 2.092103 AGTCTGGCCGCCCAAATAAATA 60.092 45.455 7.03 0.00 41.58 1.40
90 91 1.111277 GTCTGGCCGCCCAAATAAAT 58.889 50.000 7.03 0.00 41.58 1.40
91 92 0.039035 AGTCTGGCCGCCCAAATAAA 59.961 50.000 7.03 0.00 41.58 1.40
92 93 0.913205 TAGTCTGGCCGCCCAAATAA 59.087 50.000 7.03 0.00 41.58 1.40
93 94 1.136828 ATAGTCTGGCCGCCCAAATA 58.863 50.000 7.03 0.00 41.58 1.40
94 95 0.258774 AATAGTCTGGCCGCCCAAAT 59.741 50.000 7.03 0.00 41.58 2.32
95 96 0.039035 AAATAGTCTGGCCGCCCAAA 59.961 50.000 7.03 0.00 41.58 3.28
96 97 0.679640 CAAATAGTCTGGCCGCCCAA 60.680 55.000 7.03 0.00 41.58 4.12
97 98 1.077787 CAAATAGTCTGGCCGCCCA 60.078 57.895 7.03 0.00 39.32 5.36
98 99 1.823899 CCAAATAGTCTGGCCGCCC 60.824 63.158 7.03 0.00 0.00 6.13
99 100 3.827634 CCAAATAGTCTGGCCGCC 58.172 61.111 1.04 1.04 0.00 6.13
104 105 5.957842 TGTTAACAAGCCAAATAGTCTGG 57.042 39.130 5.64 0.00 36.99 3.86
105 106 8.816640 AAAATGTTAACAAGCCAAATAGTCTG 57.183 30.769 13.23 0.00 0.00 3.51
106 107 8.637986 TGAAAATGTTAACAAGCCAAATAGTCT 58.362 29.630 13.23 0.00 0.00 3.24
107 108 8.810652 TGAAAATGTTAACAAGCCAAATAGTC 57.189 30.769 13.23 0.19 0.00 2.59
108 109 9.777297 AATGAAAATGTTAACAAGCCAAATAGT 57.223 25.926 13.23 0.00 0.00 2.12
111 112 9.118300 TCAAATGAAAATGTTAACAAGCCAAAT 57.882 25.926 13.23 0.18 0.00 2.32
112 113 8.394121 GTCAAATGAAAATGTTAACAAGCCAAA 58.606 29.630 13.23 0.00 0.00 3.28
113 114 7.550551 TGTCAAATGAAAATGTTAACAAGCCAA 59.449 29.630 13.23 0.00 0.00 4.52
114 115 7.044181 TGTCAAATGAAAATGTTAACAAGCCA 58.956 30.769 13.23 8.81 0.00 4.75
115 116 7.475771 TGTCAAATGAAAATGTTAACAAGCC 57.524 32.000 13.23 3.32 0.00 4.35
127 128 9.269453 TGCATTCAACATATTGTCAAATGAAAA 57.731 25.926 14.27 0.00 35.74 2.29
128 129 8.828688 TGCATTCAACATATTGTCAAATGAAA 57.171 26.923 14.27 6.30 35.74 2.69
129 130 8.828688 TTGCATTCAACATATTGTCAAATGAA 57.171 26.923 14.27 6.90 35.74 2.57
130 131 8.828688 TTTGCATTCAACATATTGTCAAATGA 57.171 26.923 14.27 0.00 35.74 2.57
131 132 9.697250 GATTTGCATTCAACATATTGTCAAATG 57.303 29.630 10.91 8.17 36.28 2.32
132 133 9.438228 TGATTTGCATTCAACATATTGTCAAAT 57.562 25.926 0.00 0.00 36.51 2.32
133 134 8.828688 TGATTTGCATTCAACATATTGTCAAA 57.171 26.923 0.00 0.00 37.11 2.69
134 135 8.874816 CATGATTTGCATTCAACATATTGTCAA 58.125 29.630 4.19 0.00 34.44 3.18
135 136 8.035984 ACATGATTTGCATTCAACATATTGTCA 58.964 29.630 0.00 0.00 34.44 3.58
136 137 8.415192 ACATGATTTGCATTCAACATATTGTC 57.585 30.769 0.00 0.00 34.44 3.18
137 138 9.872721 TTACATGATTTGCATTCAACATATTGT 57.127 25.926 0.00 5.79 34.44 2.71
143 144 8.504815 CCAATTTTACATGATTTGCATTCAACA 58.495 29.630 0.00 0.00 34.15 3.33
144 145 7.964011 CCCAATTTTACATGATTTGCATTCAAC 59.036 33.333 0.00 0.00 34.15 3.18
145 146 7.361885 GCCCAATTTTACATGATTTGCATTCAA 60.362 33.333 0.00 0.00 34.15 2.69
146 147 6.093771 GCCCAATTTTACATGATTTGCATTCA 59.906 34.615 0.00 2.68 34.15 2.57
147 148 6.488817 GCCCAATTTTACATGATTTGCATTC 58.511 36.000 0.00 0.00 34.15 2.67
148 149 5.064962 CGCCCAATTTTACATGATTTGCATT 59.935 36.000 0.00 0.00 34.15 3.56
149 150 4.571580 CGCCCAATTTTACATGATTTGCAT 59.428 37.500 0.00 0.00 37.85 3.96
150 151 3.931468 CGCCCAATTTTACATGATTTGCA 59.069 39.130 0.00 0.00 0.00 4.08
151 152 3.309410 CCGCCCAATTTTACATGATTTGC 59.691 43.478 0.00 0.00 0.00 3.68
152 153 3.309410 GCCGCCCAATTTTACATGATTTG 59.691 43.478 0.00 0.00 0.00 2.32
153 154 3.530535 GCCGCCCAATTTTACATGATTT 58.469 40.909 0.00 0.00 0.00 2.17
154 155 2.158971 GGCCGCCCAATTTTACATGATT 60.159 45.455 0.00 0.00 0.00 2.57
155 156 1.412343 GGCCGCCCAATTTTACATGAT 59.588 47.619 0.00 0.00 0.00 2.45
156 157 0.820871 GGCCGCCCAATTTTACATGA 59.179 50.000 0.00 0.00 0.00 3.07
157 158 0.527385 CGGCCGCCCAATTTTACATG 60.527 55.000 14.67 0.00 0.00 3.21
158 159 1.671901 CCGGCCGCCCAATTTTACAT 61.672 55.000 22.85 0.00 0.00 2.29
159 160 2.344203 CCGGCCGCCCAATTTTACA 61.344 57.895 22.85 0.00 0.00 2.41
160 161 2.492560 CCGGCCGCCCAATTTTAC 59.507 61.111 22.85 0.00 0.00 2.01
161 162 3.453679 GCCGGCCGCCCAATTTTA 61.454 61.111 22.85 0.00 0.00 1.52
175 176 4.562425 ACCCATATGTGCCGGCCG 62.562 66.667 26.77 21.04 0.00 6.13
176 177 2.594592 GACCCATATGTGCCGGCC 60.595 66.667 26.77 16.24 0.00 6.13
177 178 2.972505 CGACCCATATGTGCCGGC 60.973 66.667 22.73 22.73 0.00 6.13
178 179 2.280797 CCGACCCATATGTGCCGG 60.281 66.667 0.00 0.00 0.00 6.13
179 180 2.972505 GCCGACCCATATGTGCCG 60.973 66.667 1.24 0.00 0.00 5.69
180 181 1.893808 CTGCCGACCCATATGTGCC 60.894 63.158 1.24 0.00 0.00 5.01
181 182 2.546494 GCTGCCGACCCATATGTGC 61.546 63.158 1.24 0.00 0.00 4.57
182 183 2.246739 CGCTGCCGACCCATATGTG 61.247 63.158 1.24 0.00 36.29 3.21
183 184 2.108976 CGCTGCCGACCCATATGT 59.891 61.111 1.24 0.00 36.29 2.29
184 185 1.523711 AACGCTGCCGACCCATATG 60.524 57.895 0.00 0.00 38.29 1.78
185 186 1.523711 CAACGCTGCCGACCCATAT 60.524 57.895 0.00 0.00 38.29 1.78
186 187 2.125310 CAACGCTGCCGACCCATA 60.125 61.111 0.00 0.00 38.29 2.74
196 197 4.977963 CCTATTTTTGATATGGCAACGCTG 59.022 41.667 0.00 0.00 42.51 5.18
197 198 4.037923 CCCTATTTTTGATATGGCAACGCT 59.962 41.667 0.00 0.00 42.51 5.07
198 199 4.298332 CCCTATTTTTGATATGGCAACGC 58.702 43.478 0.00 0.00 42.51 4.84
199 200 4.298332 GCCCTATTTTTGATATGGCAACG 58.702 43.478 0.00 0.00 35.98 4.10
200 201 4.298332 CGCCCTATTTTTGATATGGCAAC 58.702 43.478 11.22 0.00 35.77 4.17
201 202 3.320541 CCGCCCTATTTTTGATATGGCAA 59.679 43.478 11.22 0.00 35.77 4.52
202 203 2.890311 CCGCCCTATTTTTGATATGGCA 59.110 45.455 11.22 0.00 35.77 4.92
203 204 3.057526 GTCCGCCCTATTTTTGATATGGC 60.058 47.826 0.00 0.00 33.66 4.40
204 205 3.188460 CGTCCGCCCTATTTTTGATATGG 59.812 47.826 0.00 0.00 0.00 2.74
205 206 3.188460 CCGTCCGCCCTATTTTTGATATG 59.812 47.826 0.00 0.00 0.00 1.78
206 207 3.408634 CCGTCCGCCCTATTTTTGATAT 58.591 45.455 0.00 0.00 0.00 1.63
207 208 2.841215 CCGTCCGCCCTATTTTTGATA 58.159 47.619 0.00 0.00 0.00 2.15
208 209 1.675552 CCGTCCGCCCTATTTTTGAT 58.324 50.000 0.00 0.00 0.00 2.57
209 210 1.027792 GCCGTCCGCCCTATTTTTGA 61.028 55.000 0.00 0.00 0.00 2.69
210 211 1.431845 GCCGTCCGCCCTATTTTTG 59.568 57.895 0.00 0.00 0.00 2.44
211 212 2.110352 CGCCGTCCGCCCTATTTTT 61.110 57.895 0.00 0.00 0.00 1.94
212 213 2.512974 CGCCGTCCGCCCTATTTT 60.513 61.111 0.00 0.00 0.00 1.82
213 214 4.540735 CCGCCGTCCGCCCTATTT 62.541 66.667 0.00 0.00 35.03 1.40
237 238 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
238 239 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
240 241 0.309612 CCTTTTGTCCGTTTGGGTCG 59.690 55.000 0.00 0.00 37.00 4.79
241 242 0.031585 GCCTTTTGTCCGTTTGGGTC 59.968 55.000 0.00 0.00 37.00 4.46
242 243 1.730451 CGCCTTTTGTCCGTTTGGGT 61.730 55.000 0.00 0.00 37.00 4.51
243 244 1.007849 CGCCTTTTGTCCGTTTGGG 60.008 57.895 0.00 0.00 35.24 4.12
244 245 1.007849 CCGCCTTTTGTCCGTTTGG 60.008 57.895 0.00 0.00 0.00 3.28
245 246 0.596082 ATCCGCCTTTTGTCCGTTTG 59.404 50.000 0.00 0.00 0.00 2.93
246 247 2.188062 TATCCGCCTTTTGTCCGTTT 57.812 45.000 0.00 0.00 0.00 3.60
247 248 2.188062 TTATCCGCCTTTTGTCCGTT 57.812 45.000 0.00 0.00 0.00 4.44
248 249 2.188062 TTTATCCGCCTTTTGTCCGT 57.812 45.000 0.00 0.00 0.00 4.69
249 250 3.691498 GATTTTATCCGCCTTTTGTCCG 58.309 45.455 0.00 0.00 0.00 4.79
250 251 3.691498 CGATTTTATCCGCCTTTTGTCC 58.309 45.455 0.00 0.00 0.00 4.02
251 252 3.105937 GCGATTTTATCCGCCTTTTGTC 58.894 45.455 0.00 0.00 45.06 3.18
252 253 3.145212 GCGATTTTATCCGCCTTTTGT 57.855 42.857 0.00 0.00 45.06 2.83
259 260 2.154427 CGGACGGCGATTTTATCCGC 62.154 60.000 18.99 0.00 45.13 5.54
260 261 1.850640 CGGACGGCGATTTTATCCG 59.149 57.895 16.62 17.34 45.61 4.18
261 262 1.292992 AACGGACGGCGATTTTATCC 58.707 50.000 16.62 8.05 0.00 2.59
262 263 2.538132 CCAAACGGACGGCGATTTTATC 60.538 50.000 16.62 0.00 0.00 1.75
263 264 1.399089 CCAAACGGACGGCGATTTTAT 59.601 47.619 16.62 0.00 0.00 1.40
264 265 0.797542 CCAAACGGACGGCGATTTTA 59.202 50.000 16.62 0.00 0.00 1.52
265 266 1.577421 CCAAACGGACGGCGATTTT 59.423 52.632 16.62 3.87 0.00 1.82
266 267 2.329614 CCCAAACGGACGGCGATTT 61.330 57.895 16.62 5.62 0.00 2.17
267 268 2.744709 CCCAAACGGACGGCGATT 60.745 61.111 16.62 0.00 0.00 3.34
268 269 3.945304 GACCCAAACGGACGGCGAT 62.945 63.158 16.62 0.00 34.64 4.58
269 270 4.668118 GACCCAAACGGACGGCGA 62.668 66.667 16.62 0.00 34.64 5.54
270 271 4.973055 TGACCCAAACGGACGGCG 62.973 66.667 4.80 4.80 34.64 6.46
271 272 3.047877 CTGACCCAAACGGACGGC 61.048 66.667 0.00 0.00 34.64 5.68
272 273 3.047877 GCTGACCCAAACGGACGG 61.048 66.667 0.00 0.00 35.92 4.79
273 274 3.047877 GGCTGACCCAAACGGACG 61.048 66.667 0.00 0.00 34.64 4.79
283 284 1.966451 CAACTCCAACGGGCTGACC 60.966 63.158 0.00 0.00 0.00 4.02
284 285 2.617274 GCAACTCCAACGGGCTGAC 61.617 63.158 0.00 0.00 0.00 3.51
285 286 2.281484 GCAACTCCAACGGGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
286 287 2.281761 AGCAACTCCAACGGGCTG 60.282 61.111 0.00 0.00 32.76 4.85
287 288 1.192146 TAGAGCAACTCCAACGGGCT 61.192 55.000 0.00 0.00 37.56 5.19
288 289 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
289 290 1.676014 CCTTAGAGCAACTCCAACGGG 60.676 57.143 0.00 0.00 0.00 5.28
290 291 1.002087 ACCTTAGAGCAACTCCAACGG 59.998 52.381 0.00 0.00 0.00 4.44
291 292 2.457366 ACCTTAGAGCAACTCCAACG 57.543 50.000 0.00 0.00 0.00 4.10
292 293 4.454847 GGTTAACCTTAGAGCAACTCCAAC 59.545 45.833 17.83 0.00 0.00 3.77
293 294 4.349930 AGGTTAACCTTAGAGCAACTCCAA 59.650 41.667 21.96 0.00 46.09 3.53
294 295 3.908103 AGGTTAACCTTAGAGCAACTCCA 59.092 43.478 21.96 0.00 46.09 3.86
295 296 4.554960 AGGTTAACCTTAGAGCAACTCC 57.445 45.455 21.96 0.00 46.09 3.85
296 297 6.034161 TGTAGGTTAACCTTAGAGCAACTC 57.966 41.667 31.47 10.15 46.09 3.01
297 298 6.429521 TTGTAGGTTAACCTTAGAGCAACT 57.570 37.500 31.47 6.70 46.09 3.16
298 299 7.500720 TTTTGTAGGTTAACCTTAGAGCAAC 57.499 36.000 31.47 20.92 46.09 4.17
299 300 6.206048 GCTTTTGTAGGTTAACCTTAGAGCAA 59.794 38.462 31.47 22.34 46.09 3.91
300 301 5.704053 GCTTTTGTAGGTTAACCTTAGAGCA 59.296 40.000 31.47 18.57 46.09 4.26
301 302 5.938710 AGCTTTTGTAGGTTAACCTTAGAGC 59.061 40.000 31.47 26.86 46.09 4.09
302 303 7.159372 TGAGCTTTTGTAGGTTAACCTTAGAG 58.841 38.462 31.47 20.27 46.09 2.43
303 304 7.069877 TGAGCTTTTGTAGGTTAACCTTAGA 57.930 36.000 31.47 12.06 46.09 2.10
304 305 7.923414 ATGAGCTTTTGTAGGTTAACCTTAG 57.077 36.000 31.47 19.83 46.09 2.18
311 312 4.439057 CGGCTATGAGCTTTTGTAGGTTA 58.561 43.478 0.00 0.00 41.99 2.85
319 320 2.472909 GCGGCGGCTATGAGCTTTT 61.473 57.895 9.78 0.00 41.99 2.27
320 321 2.897350 GCGGCGGCTATGAGCTTT 60.897 61.111 9.78 0.00 41.99 3.51
340 341 2.421952 CCCATGATGGATCCGTCAAAGT 60.422 50.000 34.67 19.58 44.00 2.66
342 343 1.133823 CCCCATGATGGATCCGTCAAA 60.134 52.381 34.67 17.26 44.00 2.69
343 344 0.473755 CCCCATGATGGATCCGTCAA 59.526 55.000 34.67 20.86 44.00 3.18
346 347 0.988145 ACACCCCATGATGGATCCGT 60.988 55.000 14.26 6.04 40.96 4.69
347 348 0.535780 CACACCCCATGATGGATCCG 60.536 60.000 14.26 0.79 40.96 4.18
350 351 1.231068 GCCACACCCCATGATGGAT 59.769 57.895 14.26 0.00 40.96 3.41
353 354 2.045045 ACGCCACACCCCATGATG 60.045 61.111 0.00 0.00 0.00 3.07
354 355 2.257409 GAGACGCCACACCCCATGAT 62.257 60.000 0.00 0.00 0.00 2.45
355 356 2.927856 AGACGCCACACCCCATGA 60.928 61.111 0.00 0.00 0.00 3.07
356 357 2.436646 GAGACGCCACACCCCATG 60.437 66.667 0.00 0.00 0.00 3.66
357 358 4.082523 CGAGACGCCACACCCCAT 62.083 66.667 0.00 0.00 0.00 4.00
361 362 4.736896 GACCCGAGACGCCACACC 62.737 72.222 0.00 0.00 0.00 4.16
368 369 0.601558 TCTTTTGGAGACCCGAGACG 59.398 55.000 0.00 0.00 34.29 4.18
371 372 2.808543 CAAGTTCTTTTGGAGACCCGAG 59.191 50.000 0.00 0.00 33.02 4.63
372 373 2.846193 CAAGTTCTTTTGGAGACCCGA 58.154 47.619 0.00 0.00 33.02 5.14
374 375 2.294512 CAGCAAGTTCTTTTGGAGACCC 59.705 50.000 0.00 0.00 33.02 4.46
398 399 1.358725 TTGCGCGATAGGCAAGACAC 61.359 55.000 12.10 0.00 43.78 3.67
416 417 1.891150 CAATGTTGCCTGAGAAGCCTT 59.109 47.619 0.00 0.00 0.00 4.35
422 423 2.880268 CACAAGACAATGTTGCCTGAGA 59.120 45.455 0.00 0.00 0.00 3.27
426 427 2.884639 GGTACACAAGACAATGTTGCCT 59.115 45.455 0.00 0.00 0.00 4.75
435 436 1.948834 TCGAGAACGGTACACAAGACA 59.051 47.619 0.00 0.00 40.21 3.41
442 443 1.471287 CCTGACATCGAGAACGGTACA 59.529 52.381 0.00 0.00 40.21 2.90
445 446 0.898789 ACCCTGACATCGAGAACGGT 60.899 55.000 0.00 0.00 40.21 4.83
448 449 3.865745 CACATAACCCTGACATCGAGAAC 59.134 47.826 0.00 0.00 0.00 3.01
449 450 3.767131 TCACATAACCCTGACATCGAGAA 59.233 43.478 0.00 0.00 0.00 2.87
450 451 3.361786 TCACATAACCCTGACATCGAGA 58.638 45.455 0.00 0.00 0.00 4.04
454 455 3.804325 CGTCATCACATAACCCTGACATC 59.196 47.826 0.00 0.00 36.81 3.06
455 456 3.197766 ACGTCATCACATAACCCTGACAT 59.802 43.478 0.00 0.00 36.81 3.06
459 460 2.972625 ACACGTCATCACATAACCCTG 58.027 47.619 0.00 0.00 0.00 4.45
460 461 3.695830 AACACGTCATCACATAACCCT 57.304 42.857 0.00 0.00 0.00 4.34
464 465 4.553742 GCACACAAACACGTCATCACATAA 60.554 41.667 0.00 0.00 0.00 1.90
468 469 1.741993 GCACACAAACACGTCATCAC 58.258 50.000 0.00 0.00 0.00 3.06
481 482 0.510790 CGTAACATTGCTCGCACACA 59.489 50.000 0.00 0.00 0.00 3.72
482 483 0.789383 GCGTAACATTGCTCGCACAC 60.789 55.000 13.10 0.00 46.40 3.82
487 488 0.095245 CACAGGCGTAACATTGCTCG 59.905 55.000 0.00 0.00 0.00 5.03
490 491 0.168128 GGACACAGGCGTAACATTGC 59.832 55.000 0.00 0.00 0.00 3.56
522 523 7.147983 GGAATACCCATGTGTATTACTTTGCAA 60.148 37.037 14.17 0.00 40.57 4.08
534 535 3.724374 CGTAATCGGAATACCCATGTGT 58.276 45.455 0.00 0.00 34.14 3.72
578 579 1.372004 CACGCACAGCCACCATTTG 60.372 57.895 0.00 0.00 0.00 2.32
579 580 3.041701 CACGCACAGCCACCATTT 58.958 55.556 0.00 0.00 0.00 2.32
675 688 1.512522 CGACGAACGTACGGCATGA 60.513 57.895 21.06 0.00 41.84 3.07
837 851 0.318445 AGCTCGAACGTGTACCACAC 60.318 55.000 0.00 0.00 45.26 3.82
838 852 0.039798 GAGCTCGAACGTGTACCACA 60.040 55.000 0.00 0.00 33.40 4.17
839 853 0.039798 TGAGCTCGAACGTGTACCAC 60.040 55.000 9.64 0.00 0.00 4.16
881 901 0.603569 TCTCAGGAGCTTTCACCGAC 59.396 55.000 0.00 0.00 0.00 4.79
987 1026 2.368439 GCTGCCATCCTGTAATGAACA 58.632 47.619 0.00 0.00 36.42 3.18
1044 1083 0.249657 CGGTTGAGATAGAGCAGGGC 60.250 60.000 0.00 0.00 0.00 5.19
1053 1092 0.981183 AGTTGCCACCGGTTGAGATA 59.019 50.000 10.41 0.00 0.00 1.98
1054 1093 0.981183 TAGTTGCCACCGGTTGAGAT 59.019 50.000 10.41 0.00 0.00 2.75
1055 1094 0.034337 GTAGTTGCCACCGGTTGAGA 59.966 55.000 10.41 0.00 0.00 3.27
1056 1095 0.034896 AGTAGTTGCCACCGGTTGAG 59.965 55.000 10.41 0.18 0.00 3.02
1059 1098 1.125711 AGGAGTAGTTGCCACCGGTT 61.126 55.000 2.97 0.00 0.00 4.44
1060 1099 1.535687 AGGAGTAGTTGCCACCGGT 60.536 57.895 0.00 0.00 0.00 5.28
1062 1101 0.173708 GAGAGGAGTAGTTGCCACCG 59.826 60.000 0.00 0.00 0.00 4.94
1063 1102 0.173708 CGAGAGGAGTAGTTGCCACC 59.826 60.000 0.00 0.00 0.00 4.61
1064 1103 0.889306 ACGAGAGGAGTAGTTGCCAC 59.111 55.000 0.00 0.00 0.00 5.01
1065 1104 1.174783 GACGAGAGGAGTAGTTGCCA 58.825 55.000 0.00 0.00 0.00 4.92
1066 1105 1.402613 GAGACGAGAGGAGTAGTTGCC 59.597 57.143 0.00 0.00 0.00 4.52
1067 1106 1.402613 GGAGACGAGAGGAGTAGTTGC 59.597 57.143 0.00 0.00 0.00 4.17
1068 1107 2.018515 GGGAGACGAGAGGAGTAGTTG 58.981 57.143 0.00 0.00 0.00 3.16
1069 1108 1.917568 AGGGAGACGAGAGGAGTAGTT 59.082 52.381 0.00 0.00 0.00 2.24
1070 1109 1.487558 GAGGGAGACGAGAGGAGTAGT 59.512 57.143 0.00 0.00 0.00 2.73
1152 1191 1.544691 TGTTCAACTCTAGAGGTCGGC 59.455 52.381 23.50 9.46 0.00 5.54
1227 1266 0.732880 CGTACCTGGACAGCGTCTTG 60.733 60.000 0.00 2.97 32.47 3.02
1242 1281 1.668101 CCCACAGAGAGGGCTCGTAC 61.668 65.000 0.00 0.00 45.98 3.67
1245 1284 3.465403 CCCCACAGAGAGGGCTCG 61.465 72.222 0.00 0.00 45.98 5.03
1326 1367 7.510675 TGGATTAGGAGGAAAGTACAGATTT 57.489 36.000 0.00 0.00 0.00 2.17
1330 1371 7.256012 GGAGTATGGATTAGGAGGAAAGTACAG 60.256 44.444 0.00 0.00 0.00 2.74
1334 1375 4.908481 GGGAGTATGGATTAGGAGGAAAGT 59.092 45.833 0.00 0.00 0.00 2.66
1347 1388 5.528600 TTTGAAAATGGAGGGAGTATGGA 57.471 39.130 0.00 0.00 0.00 3.41
1365 1406 7.766738 TGAACTACCAAAGCGTCATATATTTGA 59.233 33.333 0.00 0.00 35.19 2.69
1405 1446 6.013293 GGGAGTATGTATTAGGAGGAAAGCAT 60.013 42.308 0.00 0.00 0.00 3.79
1421 1462 7.872138 TCAATTTAGAAATGGAGGGAGTATGT 58.128 34.615 0.00 0.00 0.00 2.29
1471 1536 9.284968 CATAATTATGAAATACTCCCTCCGTTT 57.715 33.333 18.92 0.00 35.75 3.60
1545 1622 5.493133 TGCAACGAAACAAGTATCTTGTT 57.507 34.783 18.26 18.26 43.72 2.83
1546 1623 5.493133 TTGCAACGAAACAAGTATCTTGT 57.507 34.783 9.00 9.00 0.00 3.16
1547 1624 8.673626 AATATTGCAACGAAACAAGTATCTTG 57.326 30.769 0.00 7.78 0.00 3.02
1548 1625 8.511321 TGAATATTGCAACGAAACAAGTATCTT 58.489 29.630 0.00 0.00 0.00 2.40
1549 1626 8.039603 TGAATATTGCAACGAAACAAGTATCT 57.960 30.769 0.00 0.00 0.00 1.98
1550 1627 8.667987 TTGAATATTGCAACGAAACAAGTATC 57.332 30.769 0.00 0.00 0.00 2.24
1551 1628 9.128107 CTTTGAATATTGCAACGAAACAAGTAT 57.872 29.630 0.00 0.00 0.00 2.12
1552 1629 8.132362 ACTTTGAATATTGCAACGAAACAAGTA 58.868 29.630 0.00 0.00 0.00 2.24
1553 1630 6.978080 ACTTTGAATATTGCAACGAAACAAGT 59.022 30.769 0.00 4.19 0.00 3.16
1554 1631 7.393551 ACTTTGAATATTGCAACGAAACAAG 57.606 32.000 0.00 3.53 0.00 3.16
1555 1632 7.763172 AACTTTGAATATTGCAACGAAACAA 57.237 28.000 0.00 2.60 0.00 2.83
1556 1633 9.469807 AATAACTTTGAATATTGCAACGAAACA 57.530 25.926 0.00 0.00 0.00 2.83
1557 1634 9.937577 GAATAACTTTGAATATTGCAACGAAAC 57.062 29.630 0.00 0.00 0.00 2.78
1558 1635 9.906660 AGAATAACTTTGAATATTGCAACGAAA 57.093 25.926 0.00 0.00 0.00 3.46
1559 1636 9.554724 GAGAATAACTTTGAATATTGCAACGAA 57.445 29.630 0.00 0.00 0.00 3.85
1560 1637 8.946085 AGAGAATAACTTTGAATATTGCAACGA 58.054 29.630 0.00 0.00 0.00 3.85
1561 1638 9.214953 GAGAGAATAACTTTGAATATTGCAACG 57.785 33.333 0.00 0.00 0.00 4.10
1802 1889 1.051008 TCTGACCTCTGCACACATGT 58.949 50.000 0.00 0.00 0.00 3.21
1844 1931 9.740239 CATGTTGATGTCCTCCTTTAATTTATG 57.260 33.333 0.00 0.00 0.00 1.90
1942 2029 6.633500 TCAACCTGTTTCTTAAAGTGATGG 57.367 37.500 0.00 0.00 0.00 3.51
1986 2073 3.320541 AGAGCTACTGAATTCATCCTCGG 59.679 47.826 8.96 0.00 0.00 4.63
2048 2135 2.958355 CAGACACCCAAAGACCATGTTT 59.042 45.455 0.00 0.00 0.00 2.83
2383 2920 0.958382 TGTCCTTGGCAATGGTACGC 60.958 55.000 0.00 0.00 0.00 4.42
2492 3029 9.569122 AAGTGTACATGTTGTAGAAGGTTAAAT 57.431 29.630 2.30 0.00 32.84 1.40
2572 3109 7.445121 TGCATTTTATATCGACTCCATCTTCT 58.555 34.615 0.00 0.00 0.00 2.85
2582 3119 5.853282 GTGAAGGCATGCATTTTATATCGAC 59.147 40.000 19.84 3.41 0.00 4.20
2712 3260 1.924524 CATAGTTTAGCCCGACACACG 59.075 52.381 0.00 0.00 42.18 4.49
2865 3413 1.474077 GACATTCCTCAATGGTGGCAC 59.526 52.381 9.70 9.70 43.47 5.01
2900 3448 6.941857 ACAAACTTTCAAACCTTTGTATGGT 58.058 32.000 0.91 0.00 35.55 3.55
2989 3539 5.295540 TCGGATTACATCGCATGAAAATCAA 59.704 36.000 0.00 10.75 37.63 2.57
3251 3803 6.239217 TCAGCTTCTTGGAGATAATAAGCA 57.761 37.500 0.00 0.00 40.30 3.91
3573 4128 2.198827 TCCCGCCCTGCATATTTATG 57.801 50.000 0.00 0.00 36.78 1.90
4189 4761 6.438259 TCCGTTCAAAAATAAGTGTTGTGA 57.562 33.333 0.00 0.00 0.00 3.58
4283 4855 8.658840 TTTTAAGGGTCTTTGCCACTTAATAT 57.341 30.769 0.00 0.00 34.45 1.28
4284 4856 8.480133 TTTTTAAGGGTCTTTGCCACTTAATA 57.520 30.769 0.00 0.00 34.45 0.98
4285 4857 6.987403 TTTTAAGGGTCTTTGCCACTTAAT 57.013 33.333 0.00 0.00 34.45 1.40
4286 4858 6.793505 TTTTTAAGGGTCTTTGCCACTTAA 57.206 33.333 0.00 0.00 33.55 1.85
4504 5110 4.274950 CGTGTGTTTGGTTTCTTGTATCCT 59.725 41.667 0.00 0.00 0.00 3.24
4525 5131 6.786967 ATAGTCTGACCTAATTACAACCGT 57.213 37.500 3.76 0.00 0.00 4.83
4598 5204 9.219603 TCTCTTGAAAACCATTTCTACATACAG 57.780 33.333 3.31 0.00 44.32 2.74
4630 5236 6.170675 AGAAAATGAGATTTCTGTGTACGC 57.829 37.500 0.00 0.00 45.47 4.42
4648 5254 0.468226 AGAGGTGCACCGACAGAAAA 59.532 50.000 29.68 0.00 42.08 2.29
4652 5258 1.080230 CTCAGAGGTGCACCGACAG 60.080 63.158 29.68 22.49 42.08 3.51
4684 5290 5.335661 CCGAAAGCTTTACTAAGTGCCAAAT 60.336 40.000 12.68 0.00 33.74 2.32
4691 5297 6.072452 ACGTAGTACCGAAAGCTTTACTAAGT 60.072 38.462 22.18 22.18 41.94 2.24
4715 5321 3.192633 CCCACTTGTTACCTTATTGGCAC 59.807 47.826 0.00 0.00 40.22 5.01
4727 5333 1.072489 TGATCCGTTGCCCACTTGTTA 59.928 47.619 0.00 0.00 0.00 2.41
4743 5349 2.319472 GCCTCGTGCAAAAAGTTGATC 58.681 47.619 0.00 0.00 40.77 2.92
4776 5382 0.035343 CCCCTTCGGTTTCTTCTCCC 60.035 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.