Multiple sequence alignment - TraesCS2D01G138900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G138900 chr2D 100.000 4761 0 0 1 4761 81944662 81939902 0.000000e+00 8793.0
1 TraesCS2D01G138900 chr2D 97.297 37 1 0 4670 4706 540811449 540811485 3.980000e-06 63.9
2 TraesCS2D01G138900 chr2B 92.973 4113 183 31 710 4760 133809265 133805197 0.000000e+00 5897.0
3 TraesCS2D01G138900 chr2B 92.457 3513 215 20 1283 4760 133704763 133701266 0.000000e+00 4974.0
4 TraesCS2D01G138900 chr2B 78.945 2484 436 57 1312 3764 134242907 134240480 0.000000e+00 1609.0
5 TraesCS2D01G138900 chr2B 78.369 2501 442 60 1294 3764 134350226 134347795 0.000000e+00 1530.0
6 TraesCS2D01G138900 chr2B 78.891 1947 311 51 1294 3175 134366318 134364407 0.000000e+00 1227.0
7 TraesCS2D01G138900 chr2B 82.506 423 51 16 783 1204 133705203 133704803 2.730000e-92 350.0
8 TraesCS2D01G138900 chr2B 97.059 34 1 0 4673 4706 497850212 497850179 1.850000e-04 58.4
9 TraesCS2D01G138900 chr2A 83.985 3734 440 72 712 4379 82202171 82198530 0.000000e+00 3437.0
10 TraesCS2D01G138900 chr2A 92.256 2079 96 17 2596 4640 82131399 82129352 0.000000e+00 2887.0
11 TraesCS2D01G138900 chr2A 95.659 1290 52 3 711 2000 82132684 82131399 0.000000e+00 2069.0
12 TraesCS2D01G138900 chr2A 78.489 2501 434 62 1294 3764 82538612 82536186 0.000000e+00 1543.0
13 TraesCS2D01G138900 chr2A 80.918 1939 299 52 1283 3202 82069793 82067907 0.000000e+00 1465.0
14 TraesCS2D01G138900 chr2A 82.195 966 154 9 1283 2245 82157801 82156851 0.000000e+00 815.0
15 TraesCS2D01G138900 chr2A 79.472 341 35 19 4114 4428 82064184 82063853 4.830000e-50 209.0
16 TraesCS2D01G138900 chr3B 90.069 725 40 12 1 712 127307293 127306588 0.000000e+00 911.0
17 TraesCS2D01G138900 chr3B 84.958 472 24 12 267 708 44769509 44769963 7.320000e-118 435.0
18 TraesCS2D01G138900 chr3B 82.759 348 43 12 371 703 157663110 157663455 1.300000e-75 294.0
19 TraesCS2D01G138900 chr3B 91.121 214 9 7 3 208 157662846 157663057 1.010000e-71 281.0
20 TraesCS2D01G138900 chr3B 81.944 216 29 7 4 209 796516038 796516253 1.760000e-39 174.0
21 TraesCS2D01G138900 chr3B 86.184 152 21 0 557 708 127308217 127308368 1.060000e-36 165.0
22 TraesCS2D01G138900 chr1A 88.740 746 44 14 1 723 57966134 57966862 0.000000e+00 876.0
23 TraesCS2D01G138900 chr5B 90.616 341 23 3 371 710 95510803 95511135 1.220000e-120 444.0
24 TraesCS2D01G138900 chr5B 94.521 146 8 0 1 146 95509337 95509482 4.790000e-55 226.0
25 TraesCS2D01G138900 chr5B 94.737 57 3 0 4650 4706 21588518 21588462 6.560000e-14 89.8
26 TraesCS2D01G138900 chr5B 94.828 58 2 1 233 289 95510712 95510769 6.560000e-14 89.8
27 TraesCS2D01G138900 chr7A 88.076 369 32 5 1 359 650554095 650553729 1.220000e-115 427.0
28 TraesCS2D01G138900 chr7A 80.634 284 37 11 426 708 646689371 646689637 2.250000e-48 204.0
29 TraesCS2D01G138900 chr6B 93.333 210 14 0 1 210 607328550 607328759 1.290000e-80 311.0
30 TraesCS2D01G138900 chr3D 82.111 341 53 7 371 710 606908513 606908846 7.800000e-73 285.0
31 TraesCS2D01G138900 chr6A 84.524 252 31 4 457 708 162983909 162984152 4.760000e-60 243.0
32 TraesCS2D01G138900 chr5D 90.000 60 6 0 4650 4709 494472312 494472253 1.420000e-10 78.7
33 TraesCS2D01G138900 chr5D 100.000 34 0 0 4673 4706 238386563 238386596 3.980000e-06 63.9
34 TraesCS2D01G138900 chr7D 88.333 60 7 0 4650 4709 63453563 63453504 6.610000e-09 73.1
35 TraesCS2D01G138900 chr6D 92.308 52 2 2 4649 4699 4725093 4725043 6.610000e-09 73.1
36 TraesCS2D01G138900 chr7B 100.000 34 0 0 4673 4706 190259942 190259909 3.980000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G138900 chr2D 81939902 81944662 4760 True 8793.000000 8793 100.000000 1 4761 1 chr2D.!!$R1 4760
1 TraesCS2D01G138900 chr2B 133805197 133809265 4068 True 5897.000000 5897 92.973000 710 4760 1 chr2B.!!$R1 4050
2 TraesCS2D01G138900 chr2B 133701266 133705203 3937 True 2662.000000 4974 87.481500 783 4760 2 chr2B.!!$R6 3977
3 TraesCS2D01G138900 chr2B 134240480 134242907 2427 True 1609.000000 1609 78.945000 1312 3764 1 chr2B.!!$R2 2452
4 TraesCS2D01G138900 chr2B 134347795 134350226 2431 True 1530.000000 1530 78.369000 1294 3764 1 chr2B.!!$R3 2470
5 TraesCS2D01G138900 chr2B 134364407 134366318 1911 True 1227.000000 1227 78.891000 1294 3175 1 chr2B.!!$R4 1881
6 TraesCS2D01G138900 chr2A 82198530 82202171 3641 True 3437.000000 3437 83.985000 712 4379 1 chr2A.!!$R2 3667
7 TraesCS2D01G138900 chr2A 82129352 82132684 3332 True 2478.000000 2887 93.957500 711 4640 2 chr2A.!!$R5 3929
8 TraesCS2D01G138900 chr2A 82536186 82538612 2426 True 1543.000000 1543 78.489000 1294 3764 1 chr2A.!!$R3 2470
9 TraesCS2D01G138900 chr2A 82063853 82069793 5940 True 837.000000 1465 80.195000 1283 4428 2 chr2A.!!$R4 3145
10 TraesCS2D01G138900 chr2A 82156851 82157801 950 True 815.000000 815 82.195000 1283 2245 1 chr2A.!!$R1 962
11 TraesCS2D01G138900 chr3B 127306588 127307293 705 True 911.000000 911 90.069000 1 712 1 chr3B.!!$R1 711
12 TraesCS2D01G138900 chr3B 157662846 157663455 609 False 287.500000 294 86.940000 3 703 2 chr3B.!!$F4 700
13 TraesCS2D01G138900 chr1A 57966134 57966862 728 False 876.000000 876 88.740000 1 723 1 chr1A.!!$F1 722
14 TraesCS2D01G138900 chr5B 95509337 95511135 1798 False 253.266667 444 93.321667 1 710 3 chr5B.!!$F1 709


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 1748 0.889994 TTGTTGGCATGCCTCATCAC 59.110 50.0 35.53 22.83 36.94 3.06 F
1566 2785 0.034670 ACTTCCAGATTCCAGCAGCC 60.035 55.0 0.00 0.00 0.00 4.85 F
2364 3649 0.310854 GCTCGACCCAACAACCTTTG 59.689 55.0 0.00 0.00 0.00 2.77 F
2445 3730 0.776810 TTCCCAAGGAACAGCCATCA 59.223 50.0 0.00 0.00 36.71 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 3364 0.666577 CGACAACACGGAGGTCCTTC 60.667 60.000 0.0 0.0 0.0 3.46 R
2588 3876 0.750850 TGCCTCGGTATCCTTAGTGC 59.249 55.000 0.0 0.0 0.0 4.40 R
3222 4521 1.169577 ACCAACAACTCACGCACAAA 58.830 45.000 0.0 0.0 0.0 2.83 R
3886 8095 3.554324 TGCTACGAAATCTAAATCCACGC 59.446 43.478 0.0 0.0 0.0 5.34 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
278 1431 4.442332 CCTGGTAGTTAATCGTGTATGCCA 60.442 45.833 0.00 0.00 0.00 4.92
352 1505 2.621338 CTCACATCGCATGTTACCTGT 58.379 47.619 0.00 0.00 42.70 4.00
430 1599 2.781158 GCGTTTTGTGCAGGTGGGT 61.781 57.895 0.00 0.00 0.00 4.51
457 1626 5.277731 CCCAGCGTTATTTTTGTGCAAAAAT 60.278 36.000 27.64 27.64 43.69 1.82
474 1648 9.877137 GTGCAAAAATAAATAAAAACTGAAGGG 57.123 29.630 0.00 0.00 0.00 3.95
504 1687 4.268720 AAAAAGGAGGCCGCACAA 57.731 50.000 9.31 0.00 0.00 3.33
515 1698 1.961277 CCGCACAACCTGTCCTCAC 60.961 63.158 0.00 0.00 0.00 3.51
565 1748 0.889994 TTGTTGGCATGCCTCATCAC 59.110 50.000 35.53 22.83 36.94 3.06
638 1821 6.039616 GTCAAGTTTTTGCACCACTTCAATA 58.960 36.000 2.08 0.00 34.21 1.90
697 1886 2.301870 CCAAGTTCTAGCACCAGTGGTA 59.698 50.000 16.22 9.19 41.96 3.25
811 2012 4.269603 CCAGCATTGTTACGATCTTCTGAG 59.730 45.833 0.00 0.00 0.00 3.35
998 2208 2.225805 ACCAGGGGAGCTTTTAGACCTA 60.226 50.000 0.00 0.00 0.00 3.08
999 2209 3.049344 CCAGGGGAGCTTTTAGACCTAT 58.951 50.000 0.00 0.00 0.00 2.57
1206 2416 2.424956 GAGCCCCTTAGTTGCAATCTTG 59.575 50.000 0.59 0.00 0.00 3.02
1210 2420 4.402474 GCCCCTTAGTTGCAATCTTGTTAT 59.598 41.667 0.59 0.00 0.00 1.89
1256 2466 5.163953 GCAGTCGTCAATACATATATGGTGC 60.164 44.000 16.96 6.07 0.00 5.01
1265 2475 4.564782 ACATATATGGTGCTGATGAGGG 57.435 45.455 16.96 0.00 0.00 4.30
1271 2481 1.144708 TGGTGCTGATGAGGGTCAAAA 59.855 47.619 0.00 0.00 0.00 2.44
1275 2485 3.507233 GTGCTGATGAGGGTCAAAATCAA 59.493 43.478 0.00 0.00 0.00 2.57
1475 2694 1.131771 CAGATGTACATGCTACGCCG 58.868 55.000 14.43 0.00 0.00 6.46
1566 2785 0.034670 ACTTCCAGATTCCAGCAGCC 60.035 55.000 0.00 0.00 0.00 4.85
1601 2821 1.409381 GCTAGCAATCTTGGGCCTTCT 60.409 52.381 10.63 0.00 0.00 2.85
1621 2864 6.408092 CCTTCTGTATGTGCCTAAGTATGGAA 60.408 42.308 0.00 0.00 0.00 3.53
1623 2872 6.582636 TCTGTATGTGCCTAAGTATGGAAAG 58.417 40.000 0.00 0.00 0.00 2.62
1627 2876 3.585289 TGTGCCTAAGTATGGAAAGGACA 59.415 43.478 0.00 0.00 0.00 4.02
1645 2894 4.762251 AGGACAATAAGAACCTCAAAGCAC 59.238 41.667 0.00 0.00 0.00 4.40
1656 2905 3.008330 CCTCAAAGCACCTCTCAGAATG 58.992 50.000 0.00 0.00 37.54 2.67
1690 2939 3.149196 GTGCTTGGACAAGGAATCTTCA 58.851 45.455 13.41 0.00 40.42 3.02
1998 3274 2.979678 ACTCACCACTTCCACCAATACT 59.020 45.455 0.00 0.00 0.00 2.12
2107 3383 0.666577 GAAGGACCTCCGTGTTGTCG 60.667 60.000 0.00 0.00 42.08 4.35
2152 3428 1.719600 ATCTGCACTTCTTGACGCTC 58.280 50.000 0.00 0.00 0.00 5.03
2160 3436 1.592081 CTTCTTGACGCTCATAGCAGC 59.408 52.381 0.00 0.00 42.58 5.25
2166 3442 0.745845 ACGCTCATAGCAGCCCAAAG 60.746 55.000 0.00 0.00 42.58 2.77
2229 3505 6.921914 AGAAAGGCAAGATCAATTTCTGAAG 58.078 36.000 0.00 0.00 38.45 3.02
2320 3605 3.117512 AGACCCACTTCAAGACACCAATT 60.118 43.478 0.00 0.00 0.00 2.32
2364 3649 0.310854 GCTCGACCCAACAACCTTTG 59.689 55.000 0.00 0.00 0.00 2.77
2366 3651 1.104577 TCGACCCAACAACCTTTGGC 61.105 55.000 0.00 0.00 44.29 4.52
2425 3710 5.957796 CAGCGGATTAAAGAATTACGTTCAC 59.042 40.000 0.00 0.00 39.39 3.18
2445 3730 0.776810 TTCCCAAGGAACAGCCATCA 59.223 50.000 0.00 0.00 36.71 3.07
2482 3767 2.338015 CCTGCACTGGCCATGTCAC 61.338 63.158 5.51 2.10 40.13 3.67
2576 3864 8.915057 AAAATCATAGGATTCACGAGATTCAT 57.085 30.769 2.61 2.83 42.87 2.57
2588 3876 2.728318 CGAGATTCATACGTGCCATGAG 59.272 50.000 0.00 0.00 34.07 2.90
3089 4383 1.270839 ACGTAATCTGTGCCTGCACTT 60.271 47.619 21.62 11.25 46.30 3.16
3291 4600 8.888716 TGCACGTTTATTATCACTGATTATGTT 58.111 29.630 0.00 0.00 0.00 2.71
3488 7688 3.476552 AGATTTGTGAAAAGGCTCGTCA 58.523 40.909 0.00 0.00 0.00 4.35
3774 7983 1.797025 AACTGACTAGCTTCAACCGC 58.203 50.000 0.00 0.00 0.00 5.68
3866 8075 9.549078 TCATTTACAATTGTAGTGAACTGTACA 57.451 29.630 22.92 0.00 29.89 2.90
3886 8095 7.689953 GTACATTACAGTACAATAAGGGACG 57.310 40.000 0.00 0.00 42.97 4.79
4071 8345 1.308998 ACTTTCGTTTGCAGTGGGAG 58.691 50.000 0.00 0.00 0.00 4.30
4111 8403 8.434733 GGTTCTATCTGTAACCAGTTAATTCC 57.565 38.462 0.00 0.00 43.84 3.01
4448 8791 3.025322 TCTGTTTTGTGGTCCATGGTT 57.975 42.857 12.58 0.00 0.00 3.67
4617 8969 7.095439 GCCGCCTAATGATGATATTATCTAAGC 60.095 40.741 8.76 4.48 0.00 3.09
4678 9042 3.118920 TCCGTCCCATAATGTGTAGTGTG 60.119 47.826 0.00 0.00 0.00 3.82
4760 9125 6.373216 TGAAATCTAGGTTTATTCCAACACCG 59.627 38.462 0.00 0.00 34.19 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
278 1431 1.677217 GCCAGCGACCTGAAGATTTCT 60.677 52.381 0.00 0.00 41.77 2.52
430 1599 2.227865 GCACAAAAATAACGCTGGGAGA 59.772 45.455 0.00 0.00 0.00 3.71
490 1673 3.570212 AGGTTGTGCGGCCTCCTT 61.570 61.111 0.00 0.00 0.00 3.36
493 1676 3.050275 GACAGGTTGTGCGGCCTC 61.050 66.667 0.00 0.00 31.73 4.70
504 1687 2.043115 TGACTGGATAGTGAGGACAGGT 59.957 50.000 0.00 0.00 37.25 4.00
515 1698 2.477825 CCGCTGTCAATGACTGGATAG 58.522 52.381 19.35 7.68 33.20 2.08
717 1906 6.837048 TGATGCAGTAAGGAGGTAAGTGTATA 59.163 38.462 0.00 0.00 0.00 1.47
867 2070 6.179756 TGCACATTATGTAGATCACAAACCT 58.820 36.000 0.00 0.00 41.55 3.50
998 2208 3.397527 ACCAGTCCATTCCAGACCATAT 58.602 45.455 0.00 0.00 34.67 1.78
999 2209 2.845659 ACCAGTCCATTCCAGACCATA 58.154 47.619 0.00 0.00 34.67 2.74
1082 2292 5.645056 TGTCATCAATAGAAGCCCCATAA 57.355 39.130 0.00 0.00 0.00 1.90
1166 2376 0.107703 CCATAGTGATGTGGCACGGT 60.108 55.000 13.77 3.87 43.42 4.83
1206 2416 4.835615 TCTGATAGAGAGGGAGCCAATAAC 59.164 45.833 0.00 0.00 0.00 1.89
1210 2420 2.672098 GTCTGATAGAGAGGGAGCCAA 58.328 52.381 0.00 0.00 0.00 4.52
1256 2466 7.870509 TCTATTTGATTTTGACCCTCATCAG 57.129 36.000 0.00 0.00 0.00 2.90
1265 2475 8.469200 TGGTCAATGGATCTATTTGATTTTGAC 58.531 33.333 0.83 6.29 41.97 3.18
1271 2481 6.946583 CCATCTGGTCAATGGATCTATTTGAT 59.053 38.462 0.83 0.00 45.51 2.57
1275 2485 5.252586 CCCATCTGGTCAATGGATCTATT 57.747 43.478 0.00 0.00 45.51 1.73
1475 2694 7.431376 TCGTAGAAATGTTCACGAATACATCTC 59.569 37.037 10.86 0.00 38.90 2.75
1601 2821 5.427157 TCCTTTCCATACTTAGGCACATACA 59.573 40.000 0.00 0.00 0.00 2.29
1621 2864 5.241728 GTGCTTTGAGGTTCTTATTGTCCTT 59.758 40.000 0.00 0.00 0.00 3.36
1623 2872 4.082733 GGTGCTTTGAGGTTCTTATTGTCC 60.083 45.833 0.00 0.00 0.00 4.02
1627 2876 5.221925 TGAGAGGTGCTTTGAGGTTCTTATT 60.222 40.000 0.00 0.00 0.00 1.40
1645 2894 5.512749 CCATCCCATAGAACATTCTGAGAGG 60.513 48.000 4.34 0.94 38.19 3.69
1656 2905 2.092429 TCCAAGCACCATCCCATAGAAC 60.092 50.000 0.00 0.00 0.00 3.01
1690 2939 1.203994 GAGCATGCAAGCCACAGAATT 59.796 47.619 21.98 0.00 34.23 2.17
1998 3274 3.202818 ACATCCTGATTATTCTGGCCACA 59.797 43.478 0.00 0.00 40.00 4.17
2088 3364 0.666577 CGACAACACGGAGGTCCTTC 60.667 60.000 0.00 0.00 0.00 3.46
2128 3404 3.372206 GCGTCAAGAAGTGCAGATACAAT 59.628 43.478 0.00 0.00 0.00 2.71
2152 3428 1.487976 TCCTCTCTTTGGGCTGCTATG 59.512 52.381 0.00 0.00 0.00 2.23
2160 3436 3.728385 AGTGGATTTCCTCTCTTTGGG 57.272 47.619 0.00 0.00 35.06 4.12
2229 3505 3.533606 TGCTCTTGGCTATCTTCTGTC 57.466 47.619 0.00 0.00 42.39 3.51
2320 3605 1.334160 TGTGTTTCCTCGAGCAGGTA 58.666 50.000 6.99 0.00 43.95 3.08
2364 3649 5.116069 TGTAAGATTTCTTTTTGTCGGCC 57.884 39.130 0.00 0.00 37.40 6.13
2425 3710 1.272092 TGATGGCTGTTCCTTGGGAAG 60.272 52.381 0.00 0.00 42.88 3.46
2445 3730 3.199508 CAGGGAGAAGATCATGGTCTGTT 59.800 47.826 9.83 0.18 0.00 3.16
2482 3767 5.947228 TCACCAGCAAGACTTTCAATAAG 57.053 39.130 0.00 0.00 0.00 1.73
2517 3805 2.095059 AGCTGCTTTGCTTATTTCCACG 60.095 45.455 0.00 0.00 40.93 4.94
2526 3814 2.276732 TGAGGTTAGCTGCTTTGCTT 57.723 45.000 7.79 0.00 43.74 3.91
2588 3876 0.750850 TGCCTCGGTATCCTTAGTGC 59.249 55.000 0.00 0.00 0.00 4.40
2593 3881 1.568504 TGTTCTGCCTCGGTATCCTT 58.431 50.000 0.00 0.00 0.00 3.36
2594 3882 1.568504 TTGTTCTGCCTCGGTATCCT 58.431 50.000 0.00 0.00 0.00 3.24
3089 4383 2.421775 GACTCTCTGAGCTCATGTCGAA 59.578 50.000 18.63 0.00 32.04 3.71
3217 4516 3.290308 ACAACTCACGCACAAAACAAA 57.710 38.095 0.00 0.00 0.00 2.83
3218 4517 2.983136 CAACAACTCACGCACAAAACAA 59.017 40.909 0.00 0.00 0.00 2.83
3219 4518 2.590073 CAACAACTCACGCACAAAACA 58.410 42.857 0.00 0.00 0.00 2.83
3220 4519 1.917303 CCAACAACTCACGCACAAAAC 59.083 47.619 0.00 0.00 0.00 2.43
3221 4520 1.542030 ACCAACAACTCACGCACAAAA 59.458 42.857 0.00 0.00 0.00 2.44
3222 4521 1.169577 ACCAACAACTCACGCACAAA 58.830 45.000 0.00 0.00 0.00 2.83
3291 4600 7.028962 GTGACAATTCAATTTGCAGCTATACA 58.971 34.615 0.00 0.00 31.90 2.29
3488 7688 5.384063 TCCGTATTTGCATTCAACACATT 57.616 34.783 0.00 0.00 30.75 2.71
3774 7983 4.462508 TCAGAAGTTCTGCTACCATCTG 57.537 45.455 25.31 1.60 43.95 2.90
3866 8075 4.142093 ACGCGTCCCTTATTGTACTGTAAT 60.142 41.667 5.58 0.00 0.00 1.89
3886 8095 3.554324 TGCTACGAAATCTAAATCCACGC 59.446 43.478 0.00 0.00 0.00 5.34
4071 8345 8.790718 ACAGATAGAACCATTTGATTATGCATC 58.209 33.333 0.19 0.00 0.00 3.91
4111 8403 7.792374 ACAGTATATGCCAAAACAGTGATAG 57.208 36.000 0.00 0.00 0.00 2.08
4448 8791 3.937814 AGTCTCGTATTGCAACATTGGA 58.062 40.909 0.00 0.00 0.00 3.53
4617 8969 4.467198 AGGTTTACCATCCGTGACTAAG 57.533 45.455 1.13 0.00 38.89 2.18
4698 9062 4.174762 GGATTCTGTTGTTAGTCCGTCTC 58.825 47.826 0.00 0.00 0.00 3.36



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.