Multiple sequence alignment - TraesCS2D01G137900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G137900 chr2D 100.000 4748 0 0 1 4748 81250560 81245813 0.000000e+00 8769.0
1 TraesCS2D01G137900 chr2D 87.088 697 72 8 3445 4138 81152459 81151778 0.000000e+00 773.0
2 TraesCS2D01G137900 chr2D 100.000 265 0 0 4871 5135 81245690 81245426 1.660000e-134 490.0
3 TraesCS2D01G137900 chr2D 91.748 206 13 4 4932 5135 630002323 630002120 3.030000e-72 283.0
4 TraesCS2D01G137900 chr2D 85.019 267 35 4 2904 3167 81152809 81152545 3.050000e-67 267.0
5 TraesCS2D01G137900 chr2D 92.969 128 9 0 25 152 83851586 83851459 2.440000e-43 187.0
6 TraesCS2D01G137900 chr2D 86.076 158 15 4 1364 1514 81160680 81160523 4.110000e-36 163.0
7 TraesCS2D01G137900 chr2D 80.576 139 20 5 3256 3388 589522099 589521962 3.270000e-17 100.0
8 TraesCS2D01G137900 chr2D 77.622 143 26 6 3251 3388 25076697 25076838 1.190000e-11 82.4
9 TraesCS2D01G137900 chr2A 93.613 2505 103 11 1 2481 81725534 81723063 0.000000e+00 3687.0
10 TraesCS2D01G137900 chr2A 92.699 2082 117 19 2478 4541 81722790 81720726 0.000000e+00 2970.0
11 TraesCS2D01G137900 chr2A 87.074 704 71 8 3445 4142 81660217 81659528 0.000000e+00 778.0
12 TraesCS2D01G137900 chr2A 90.476 210 17 3 4928 5135 35993332 35993540 1.820000e-69 274.0
13 TraesCS2D01G137900 chr2A 85.882 255 25 7 1269 1514 81666210 81665958 1.420000e-65 261.0
14 TraesCS2D01G137900 chr2A 94.012 167 10 0 4536 4702 81720483 81720317 2.370000e-63 254.0
15 TraesCS2D01G137900 chr2A 84.351 262 32 6 2914 3172 81660532 81660277 1.100000e-61 248.0
16 TraesCS2D01G137900 chr2A 86.250 80 8 3 3250 3329 770021798 770021722 3.290000e-12 84.2
17 TraesCS2D01G137900 chr2B 93.177 982 49 10 3426 4395 132856590 132855615 0.000000e+00 1426.0
18 TraesCS2D01G137900 chr2B 88.816 912 54 18 707 1580 132859700 132858799 0.000000e+00 1075.0
19 TraesCS2D01G137900 chr2B 83.761 936 123 17 3445 4373 132830492 132829579 0.000000e+00 859.0
20 TraesCS2D01G137900 chr2B 89.764 508 39 11 2083 2585 132858268 132857769 5.610000e-179 638.0
21 TraesCS2D01G137900 chr2B 85.575 513 35 10 2678 3155 132857223 132856715 7.680000e-138 501.0
22 TraesCS2D01G137900 chr2B 90.169 356 24 8 1619 1965 132858793 132858440 2.180000e-123 453.0
23 TraesCS2D01G137900 chr2B 87.549 257 27 2 1267 1520 132836473 132836219 5.030000e-75 292.0
24 TraesCS2D01G137900 chr2B 81.102 381 43 13 276 645 132860575 132860213 1.410000e-70 278.0
25 TraesCS2D01G137900 chr2B 85.878 262 31 5 2914 3172 132830808 132830550 1.820000e-69 274.0
26 TraesCS2D01G137900 chr2B 95.652 115 5 0 170 284 132860937 132860823 8.780000e-43 185.0
27 TraesCS2D01G137900 chr2B 92.366 131 7 2 30 157 621669242 621669112 3.160000e-42 183.0
28 TraesCS2D01G137900 chr2B 88.119 101 6 1 1961 2055 132858370 132858270 1.170000e-21 115.0
29 TraesCS2D01G137900 chr7D 91.748 206 15 2 4931 5135 75346786 75346990 8.420000e-73 285.0
30 TraesCS2D01G137900 chr7D 91.220 205 16 2 4933 5135 536118821 536119025 1.410000e-70 278.0
31 TraesCS2D01G137900 chr5A 91.748 206 14 3 4933 5135 148835881 148835676 3.030000e-72 283.0
32 TraesCS2D01G137900 chr5A 90.610 213 16 4 4926 5135 334341694 334341483 3.920000e-71 279.0
33 TraesCS2D01G137900 chr3A 90.610 213 18 2 4925 5135 587890601 587890813 1.090000e-71 281.0
34 TraesCS2D01G137900 chr6B 91.960 199 14 2 4939 5135 634640622 634640424 1.410000e-70 278.0
35 TraesCS2D01G137900 chr6B 81.203 133 23 2 26 156 659043198 659043066 7.030000e-19 106.0
36 TraesCS2D01G137900 chr3D 91.919 198 15 1 4939 5135 356633103 356632906 5.060000e-70 276.0
37 TraesCS2D01G137900 chr3D 85.393 89 9 4 552 638 603573928 603574014 7.080000e-14 89.8
38 TraesCS2D01G137900 chr5D 94.615 130 6 1 27 155 457009788 457009917 3.140000e-47 200.0
39 TraesCS2D01G137900 chr3B 91.603 131 8 3 27 155 656739542 656739671 1.470000e-40 178.0
40 TraesCS2D01G137900 chr1D 80.214 187 30 4 3247 3426 330094156 330094342 3.230000e-27 134.0
41 TraesCS2D01G137900 chr1A 79.032 186 33 3 3247 3426 427302607 427302792 6.980000e-24 122.0
42 TraesCS2D01G137900 chr1A 88.750 80 7 2 3252 3329 565188472 565188551 4.230000e-16 97.1
43 TraesCS2D01G137900 chr1A 76.374 182 37 4 3252 3427 568702275 568702456 5.470000e-15 93.5
44 TraesCS2D01G137900 chr7A 82.482 137 23 1 30 165 78737298 78737162 9.030000e-23 119.0
45 TraesCS2D01G137900 chr6D 86.420 81 9 2 3243 3321 78749791 78749711 2.550000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G137900 chr2D 81245426 81250560 5134 True 4629.500000 8769 100.000000 1 5135 2 chr2D.!!$R6 5134
1 TraesCS2D01G137900 chr2D 81151778 81152809 1031 True 520.000000 773 86.053500 2904 4138 2 chr2D.!!$R5 1234
2 TraesCS2D01G137900 chr2A 81720317 81725534 5217 True 2303.666667 3687 93.441333 1 4702 3 chr2A.!!$R4 4701
3 TraesCS2D01G137900 chr2A 81659528 81660532 1004 True 513.000000 778 85.712500 2914 4142 2 chr2A.!!$R3 1228
4 TraesCS2D01G137900 chr2B 132855615 132860937 5322 True 583.875000 1426 89.046750 170 4395 8 chr2B.!!$R4 4225
5 TraesCS2D01G137900 chr2B 132829579 132830808 1229 True 566.500000 859 84.819500 2914 4373 2 chr2B.!!$R3 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 1108 0.467290 GGAGTTGCCACACCTTTCCA 60.467 55.0 0.0 0.0 36.34 3.53 F
1805 2568 0.807667 GCAATGCACGGAGAGTCGAT 60.808 55.0 0.0 0.0 0.00 3.59 F
2370 3224 0.840617 TGGCCATATAAACCCGAGCA 59.159 50.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 2614 1.229428 CACTTCATCACACAACGGCT 58.771 50.0 0.00 0.0 0.00 5.52 R
3251 4911 0.533032 GACTGAGACCTAGCCACACC 59.467 60.0 0.00 0.0 0.00 4.16 R
4187 5888 0.463116 ACATCCGGGTGTATTTCGCC 60.463 55.0 21.57 0.0 45.27 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 7.969536 TCTCTTTCTTTCTCGTGATTTTCAT 57.030 32.000 0.00 0.00 0.00 2.57
136 137 7.573916 TTTGACATTTGTTTAATGGTATGCG 57.426 32.000 0.00 0.00 46.49 4.73
153 154 8.330466 TGGTATGCGAAATTTCTCTAAAAAGA 57.670 30.769 15.92 0.00 0.00 2.52
155 156 9.062674 GGTATGCGAAATTTCTCTAAAAAGAAC 57.937 33.333 15.92 1.57 35.06 3.01
160 161 9.020813 GCGAAATTTCTCTAAAAAGAACTGTTT 57.979 29.630 15.92 0.00 35.06 2.83
295 552 9.155053 GGAAGTTAATTAAATTATGTCGAAGCG 57.845 33.333 10.64 0.00 0.00 4.68
315 572 3.604772 GCGACAGTTACTGCTCTGTTTTG 60.605 47.826 12.80 0.00 43.64 2.44
328 585 6.959361 TGCTCTGTTTTGTAATGTCTTCTTC 58.041 36.000 0.00 0.00 0.00 2.87
408 665 6.041069 ACCCCATGAACAGAAAATACGAAAAA 59.959 34.615 0.00 0.00 0.00 1.94
493 757 4.688879 TCGACAAATAACATCCACTCACAC 59.311 41.667 0.00 0.00 0.00 3.82
498 762 7.725251 ACAAATAACATCCACTCACACAAAAT 58.275 30.769 0.00 0.00 0.00 1.82
536 804 6.314896 CCTCAAAGTTTTGTGCAATGGTTTTA 59.685 34.615 4.67 0.00 39.18 1.52
541 809 8.908172 AAGTTTTGTGCAATGGTTTTATTTTG 57.092 26.923 0.00 0.00 0.00 2.44
702 1108 0.467290 GGAGTTGCCACACCTTTCCA 60.467 55.000 0.00 0.00 36.34 3.53
731 1450 3.308832 CCCACACACCCCATTAACAGTAT 60.309 47.826 0.00 0.00 0.00 2.12
891 1615 7.010552 ACACTATGACTGATTATCGTTTGAAGC 59.989 37.037 0.00 0.00 0.00 3.86
1190 1949 2.961721 CGATCCATCGCCACACCG 60.962 66.667 0.00 0.00 43.84 4.94
1199 1958 3.121030 GCCACACCGCACTGCTAG 61.121 66.667 0.00 0.00 0.00 3.42
1200 1959 2.656646 CCACACCGCACTGCTAGA 59.343 61.111 0.00 0.00 0.00 2.43
1202 1961 1.290324 CACACCGCACTGCTAGAGT 59.710 57.895 0.00 0.00 34.02 3.24
1209 1968 2.161486 CACTGCTAGAGTTCGGCGC 61.161 63.158 0.00 0.00 29.75 6.53
1213 1972 1.317431 TGCTAGAGTTCGGCGCCTTA 61.317 55.000 26.68 9.93 0.00 2.69
1216 1975 1.337071 CTAGAGTTCGGCGCCTTATCA 59.663 52.381 26.68 0.00 0.00 2.15
1236 1995 2.485426 CACGACCAGAATCACTGCATTT 59.515 45.455 0.00 0.00 44.52 2.32
1355 2114 2.665000 CATCACCGTGGACCAGCT 59.335 61.111 0.00 0.00 0.00 4.24
1434 2193 2.437281 CAGCCAGTGGGTCAAGATCTAT 59.563 50.000 11.93 0.00 36.17 1.98
1443 2202 4.164796 TGGGTCAAGATCTATGTCAAGCAT 59.835 41.667 0.00 0.00 41.42 3.79
1493 2252 8.353684 ACTAGTGTAGCACTGCTAATACTAATG 58.646 37.037 23.51 18.71 45.01 1.90
1781 2540 3.131223 CGTGGGCTAGAGAGATGAAGAAA 59.869 47.826 0.00 0.00 0.00 2.52
1805 2568 0.807667 GCAATGCACGGAGAGTCGAT 60.808 55.000 0.00 0.00 0.00 3.59
1851 2614 6.078202 TGTTTTCGGTTGCTTGATGATTAA 57.922 33.333 0.00 0.00 0.00 1.40
1890 2661 5.990668 AGTGTTTGGAGGATAGACAATACC 58.009 41.667 0.00 0.00 0.00 2.73
1895 2666 4.826616 TGGAGGATAGACAATACCCATCA 58.173 43.478 0.00 0.00 0.00 3.07
2025 2872 6.127253 CCAAGTTTTCTCAATCCTATGCCAAT 60.127 38.462 0.00 0.00 0.00 3.16
2026 2873 7.325694 CAAGTTTTCTCAATCCTATGCCAATT 58.674 34.615 0.00 0.00 0.00 2.32
2029 2876 8.377799 AGTTTTCTCAATCCTATGCCAATTTTT 58.622 29.630 0.00 0.00 0.00 1.94
2079 2932 7.566760 ACAAGATATGTGTTTTGTTGAGACA 57.433 32.000 0.00 0.00 41.93 3.41
2080 2933 7.417612 ACAAGATATGTGTTTTGTTGAGACAC 58.582 34.615 0.00 0.00 41.93 3.67
2084 2937 4.837896 TGTGTTTTGTTGAGACACACAA 57.162 36.364 4.59 0.00 46.09 3.33
2085 2938 4.793071 TGTGTTTTGTTGAGACACACAAG 58.207 39.130 4.59 0.00 46.09 3.16
2086 2939 4.517075 TGTGTTTTGTTGAGACACACAAGA 59.483 37.500 4.59 0.00 46.09 3.02
2087 2940 5.182950 TGTGTTTTGTTGAGACACACAAGAT 59.817 36.000 4.59 0.00 46.09 2.40
2088 2941 6.372937 TGTGTTTTGTTGAGACACACAAGATA 59.627 34.615 4.59 0.00 46.09 1.98
2089 2942 7.066887 TGTGTTTTGTTGAGACACACAAGATAT 59.933 33.333 4.59 0.00 46.09 1.63
2090 2943 7.376866 GTGTTTTGTTGAGACACACAAGATATG 59.623 37.037 0.00 0.00 42.36 1.78
2091 2944 7.066887 TGTTTTGTTGAGACACACAAGATATGT 59.933 33.333 0.00 0.00 45.34 2.29
2370 3224 0.840617 TGGCCATATAAACCCGAGCA 59.159 50.000 0.00 0.00 0.00 4.26
2771 4366 6.879400 ACCTTTTCCTATAGCTTGTACTCTG 58.121 40.000 0.00 0.00 0.00 3.35
2830 4425 7.772332 TTAATGCGTTTATTTGTGTTGGTTT 57.228 28.000 0.00 0.00 0.00 3.27
2944 4566 5.488919 AGAGAAGGTGATAATCCCAAGTGAA 59.511 40.000 0.00 0.00 0.00 3.18
3105 4727 2.612972 CGTACAACAGCTCCACCTTCAT 60.613 50.000 0.00 0.00 0.00 2.57
3209 4869 4.570772 CCTTACACGCAATGCAACTAGTAT 59.429 41.667 5.91 0.00 0.00 2.12
3259 4919 5.940617 TGATGCTATATTAAAGGTGTGGCT 58.059 37.500 0.00 0.00 0.00 4.75
3262 4922 5.865085 TGCTATATTAAAGGTGTGGCTAGG 58.135 41.667 0.00 0.00 0.00 3.02
3273 4933 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
3275 4935 1.558294 TGGCTAGGTCTCAGTCGACTA 59.442 52.381 19.57 0.00 34.38 2.59
3277 4937 2.614983 GGCTAGGTCTCAGTCGACTAAG 59.385 54.545 19.57 14.47 34.38 2.18
3292 4952 9.015577 CAGTCGACTAAGATTTAATCAAGTCTC 57.984 37.037 19.57 19.67 39.99 3.36
3307 4967 8.764524 AATCAAGTCTCAGTTAAGTGACATAC 57.235 34.615 8.98 7.94 35.17 2.39
3312 4972 7.773149 AGTCTCAGTTAAGTGACATACCATAC 58.227 38.462 8.98 0.00 35.17 2.39
3331 4993 8.159344 ACCATACAAGAGAGAAAGAAAAACTG 57.841 34.615 0.00 0.00 0.00 3.16
3332 4994 7.775561 ACCATACAAGAGAGAAAGAAAAACTGT 59.224 33.333 0.00 0.00 0.00 3.55
3333 4995 8.286097 CCATACAAGAGAGAAAGAAAAACTGTC 58.714 37.037 0.00 0.00 33.25 3.51
3391 5053 8.744652 AGGAATATAGTATCCATTGAGACTTCG 58.255 37.037 0.00 0.00 40.03 3.79
3393 5055 9.915629 GAATATAGTATCCATTGAGACTTCGTT 57.084 33.333 0.00 0.00 40.03 3.85
3394 5056 9.698309 AATATAGTATCCATTGAGACTTCGTTG 57.302 33.333 0.00 0.00 40.03 4.10
3397 5059 1.697432 TCCATTGAGACTTCGTTGGGT 59.303 47.619 0.00 0.00 31.96 4.51
3402 5064 0.879765 GAGACTTCGTTGGGTCTCGA 59.120 55.000 7.23 0.00 45.49 4.04
3405 5067 1.201647 GACTTCGTTGGGTCTCGATCA 59.798 52.381 0.00 0.00 36.01 2.92
3409 5071 1.067846 TCGTTGGGTCTCGATCAACTG 60.068 52.381 14.52 10.32 38.74 3.16
3587 5252 4.077184 CCGGCACTACTTCCGCCA 62.077 66.667 0.00 0.00 46.60 5.69
3654 5319 1.107114 CCATCTACGAGGACTGCACT 58.893 55.000 0.00 0.00 0.00 4.40
3663 5328 4.878774 GACTGCACTCTCCAGTCG 57.121 61.111 5.87 0.00 46.56 4.18
3912 5580 0.394938 TTACAGCTCCTGGTTTCGCA 59.605 50.000 0.00 0.00 35.51 5.10
3942 5610 1.884579 CTCTGTGCTGTTTTGGCTGAT 59.115 47.619 0.00 0.00 0.00 2.90
3972 5652 1.946267 CTTACGCACGGTGCCTTTT 59.054 52.632 26.00 11.27 41.12 2.27
4074 5754 3.762288 AGAAGCACATGAACAATGCAGAT 59.238 39.130 0.00 0.00 41.97 2.90
4147 5838 1.745489 CCTTAGTTGTGGCTCGCCC 60.745 63.158 5.33 0.00 34.56 6.13
4187 5888 4.679373 AGTTGTGGATGGATAGCTAGTG 57.321 45.455 0.00 0.00 0.00 2.74
4201 5902 1.567504 CTAGTGGCGAAATACACCCG 58.432 55.000 0.00 0.00 38.34 5.28
4235 5939 5.882000 TCAAGGTTCATGGTCTGATGTAATG 59.118 40.000 0.00 0.00 32.72 1.90
4343 6048 6.534634 ACAAGTTTATATGTATGGGCCTCTC 58.465 40.000 4.53 0.00 0.00 3.20
4436 6142 8.640063 TGATTCAGGGTATCAATAATCATTGG 57.360 34.615 0.00 0.00 41.66 3.16
4462 6168 3.598019 ATGGACTTCGCATGCATTTTT 57.402 38.095 19.57 0.00 0.00 1.94
4464 6170 4.511617 TGGACTTCGCATGCATTTTTAA 57.488 36.364 19.57 0.79 0.00 1.52
4467 6173 3.848726 ACTTCGCATGCATTTTTAAGGG 58.151 40.909 19.57 0.00 0.00 3.95
4468 6174 2.292103 TCGCATGCATTTTTAAGGGC 57.708 45.000 19.57 0.00 0.00 5.19
4469 6175 1.824230 TCGCATGCATTTTTAAGGGCT 59.176 42.857 19.57 0.00 0.00 5.19
4470 6176 1.928503 CGCATGCATTTTTAAGGGCTG 59.071 47.619 19.57 0.00 0.00 4.85
4490 6199 4.154918 GCTGTTTTCCTATTGACTCCAGTG 59.845 45.833 0.00 0.00 0.00 3.66
4491 6200 4.072131 TGTTTTCCTATTGACTCCAGTGC 58.928 43.478 0.00 0.00 0.00 4.40
4515 6224 7.975058 TGCCATGAATACATATTTCTTTGTGTG 59.025 33.333 0.00 0.00 35.09 3.82
4524 6233 8.006298 ACATATTTCTTTGTGTGAACTCCAAA 57.994 30.769 0.00 0.00 0.00 3.28
4526 6235 5.975693 TTTCTTTGTGTGAACTCCAAACT 57.024 34.783 0.00 0.00 34.04 2.66
4528 6237 3.694072 TCTTTGTGTGAACTCCAAACTGG 59.306 43.478 0.00 0.00 39.43 4.00
4530 6239 0.307760 GTGTGAACTCCAAACTGGCG 59.692 55.000 0.00 0.00 37.47 5.69
4534 6243 3.270877 GTGAACTCCAAACTGGCGATAT 58.729 45.455 0.00 0.00 37.47 1.63
4567 6524 9.141400 TGTTGTGAAAAAGTGTTTACCAAATAC 57.859 29.630 0.00 0.00 33.27 1.89
4583 6540 1.618876 ATACAACATCCGGCCCGTGA 61.619 55.000 0.85 0.00 0.00 4.35
4656 6613 6.234920 TGGTTAGCACTTGTTAGCTTATCAA 58.765 36.000 0.00 0.00 42.05 2.57
4705 6662 9.668497 ATCGATAAAAGGTAGGATATTTAAGGC 57.332 33.333 0.00 0.00 0.00 4.35
4706 6663 8.877195 TCGATAAAAGGTAGGATATTTAAGGCT 58.123 33.333 0.00 0.00 0.00 4.58
4707 6664 8.936864 CGATAAAAGGTAGGATATTTAAGGCTG 58.063 37.037 0.00 0.00 0.00 4.85
4708 6665 9.794719 GATAAAAGGTAGGATATTTAAGGCTGT 57.205 33.333 0.00 0.00 0.00 4.40
4710 6667 8.895141 AAAAGGTAGGATATTTAAGGCTGTTT 57.105 30.769 0.00 0.00 0.00 2.83
4711 6668 8.895141 AAAGGTAGGATATTTAAGGCTGTTTT 57.105 30.769 0.00 0.00 0.00 2.43
4712 6669 8.895141 AAGGTAGGATATTTAAGGCTGTTTTT 57.105 30.769 0.00 0.00 0.00 1.94
4713 6670 9.984590 AAGGTAGGATATTTAAGGCTGTTTTTA 57.015 29.630 0.00 0.00 0.00 1.52
4714 6671 9.984590 AGGTAGGATATTTAAGGCTGTTTTTAA 57.015 29.630 0.00 0.00 0.00 1.52
4718 6675 9.541884 AGGATATTTAAGGCTGTTTTTAAGGAA 57.458 29.630 0.00 0.00 0.00 3.36
4735 6692 9.601217 TTTTAAGGAAAACCGATGAAAAATTCA 57.399 25.926 0.00 0.00 35.42 2.57
4736 6693 8.810652 TTAAGGAAAACCGATGAAAAATTCAG 57.189 30.769 0.00 0.00 43.98 3.02
4737 6694 6.648879 AGGAAAACCGATGAAAAATTCAGA 57.351 33.333 0.00 0.00 43.98 3.27
4738 6695 6.681777 AGGAAAACCGATGAAAAATTCAGAG 58.318 36.000 0.00 0.00 43.98 3.35
4739 6696 6.490040 AGGAAAACCGATGAAAAATTCAGAGA 59.510 34.615 0.00 0.00 43.98 3.10
4740 6697 7.177392 AGGAAAACCGATGAAAAATTCAGAGAT 59.823 33.333 0.00 0.00 43.98 2.75
4741 6698 7.486232 GGAAAACCGATGAAAAATTCAGAGATC 59.514 37.037 0.00 0.00 43.98 2.75
4742 6699 5.725110 ACCGATGAAAAATTCAGAGATCG 57.275 39.130 0.00 0.00 43.98 3.69
4743 6700 5.419542 ACCGATGAAAAATTCAGAGATCGA 58.580 37.500 12.72 0.00 43.98 3.59
4744 6701 5.874810 ACCGATGAAAAATTCAGAGATCGAA 59.125 36.000 12.72 0.00 43.98 3.71
4745 6702 6.036517 ACCGATGAAAAATTCAGAGATCGAAG 59.963 38.462 12.72 3.48 43.98 3.79
4746 6703 6.256539 CCGATGAAAAATTCAGAGATCGAAGA 59.743 38.462 12.72 0.00 43.98 2.87
4747 6704 7.201556 CCGATGAAAAATTCAGAGATCGAAGAA 60.202 37.037 12.72 0.46 43.98 2.52
4888 6845 3.768633 CATGGGACGAAGGAAGAGG 57.231 57.895 0.00 0.00 0.00 3.69
4889 6846 0.905357 CATGGGACGAAGGAAGAGGT 59.095 55.000 0.00 0.00 0.00 3.85
4890 6847 0.905357 ATGGGACGAAGGAAGAGGTG 59.095 55.000 0.00 0.00 0.00 4.00
4891 6848 1.192146 TGGGACGAAGGAAGAGGTGG 61.192 60.000 0.00 0.00 0.00 4.61
4892 6849 1.079057 GGACGAAGGAAGAGGTGGC 60.079 63.158 0.00 0.00 0.00 5.01
4893 6850 1.079057 GACGAAGGAAGAGGTGGCC 60.079 63.158 0.00 0.00 0.00 5.36
4894 6851 1.827399 GACGAAGGAAGAGGTGGCCA 61.827 60.000 0.00 0.00 0.00 5.36
4895 6852 1.201429 ACGAAGGAAGAGGTGGCCAT 61.201 55.000 9.72 0.00 0.00 4.40
4896 6853 0.035056 CGAAGGAAGAGGTGGCCATT 60.035 55.000 9.72 0.00 0.00 3.16
4897 6854 1.209504 CGAAGGAAGAGGTGGCCATTA 59.790 52.381 9.72 0.00 0.00 1.90
4898 6855 2.743183 CGAAGGAAGAGGTGGCCATTAG 60.743 54.545 9.72 0.00 0.00 1.73
4899 6856 1.216990 AGGAAGAGGTGGCCATTAGG 58.783 55.000 9.72 0.00 38.23 2.69
4900 6857 1.213296 GGAAGAGGTGGCCATTAGGA 58.787 55.000 9.72 0.00 36.89 2.94
4901 6858 1.564348 GGAAGAGGTGGCCATTAGGAA 59.436 52.381 9.72 0.00 36.89 3.36
4902 6859 2.025321 GGAAGAGGTGGCCATTAGGAAA 60.025 50.000 9.72 0.00 36.89 3.13
4903 6860 3.373110 GGAAGAGGTGGCCATTAGGAAAT 60.373 47.826 9.72 0.00 36.89 2.17
4904 6861 4.141251 GGAAGAGGTGGCCATTAGGAAATA 60.141 45.833 9.72 0.00 36.89 1.40
4905 6862 5.445964 GAAGAGGTGGCCATTAGGAAATAA 58.554 41.667 9.72 0.00 36.89 1.40
4906 6863 5.466127 AGAGGTGGCCATTAGGAAATAAA 57.534 39.130 9.72 0.00 36.89 1.40
4907 6864 5.449553 AGAGGTGGCCATTAGGAAATAAAG 58.550 41.667 9.72 0.00 36.89 1.85
4908 6865 5.044105 AGAGGTGGCCATTAGGAAATAAAGT 60.044 40.000 9.72 0.00 36.89 2.66
4909 6866 5.201243 AGGTGGCCATTAGGAAATAAAGTC 58.799 41.667 9.72 0.00 36.89 3.01
4910 6867 4.341235 GGTGGCCATTAGGAAATAAAGTCC 59.659 45.833 9.72 0.00 36.89 3.85
4911 6868 4.953579 GTGGCCATTAGGAAATAAAGTCCA 59.046 41.667 9.72 0.00 37.65 4.02
4912 6869 5.420739 GTGGCCATTAGGAAATAAAGTCCAA 59.579 40.000 9.72 0.00 37.65 3.53
4913 6870 6.098266 GTGGCCATTAGGAAATAAAGTCCAAT 59.902 38.462 9.72 0.00 37.65 3.16
4914 6871 6.671779 TGGCCATTAGGAAATAAAGTCCAATT 59.328 34.615 0.00 0.00 37.65 2.32
4915 6872 7.181845 TGGCCATTAGGAAATAAAGTCCAATTT 59.818 33.333 0.00 0.00 37.65 1.82
4916 6873 8.046708 GGCCATTAGGAAATAAAGTCCAATTTT 58.953 33.333 0.00 0.00 37.65 1.82
4917 6874 9.098355 GCCATTAGGAAATAAAGTCCAATTTTC 57.902 33.333 0.00 0.00 37.65 2.29
4930 6887 8.940397 AAGTCCAATTTTCTCTTTATTGAGGA 57.060 30.769 0.00 0.00 34.98 3.71
4931 6888 8.572855 AGTCCAATTTTCTCTTTATTGAGGAG 57.427 34.615 0.00 0.00 34.98 3.69
4932 6889 8.166726 AGTCCAATTTTCTCTTTATTGAGGAGT 58.833 33.333 0.00 0.00 34.98 3.85
4933 6890 8.797438 GTCCAATTTTCTCTTTATTGAGGAGTT 58.203 33.333 0.00 0.00 34.98 3.01
4934 6891 9.367160 TCCAATTTTCTCTTTATTGAGGAGTTT 57.633 29.630 0.00 0.00 34.98 2.66
4935 6892 9.987272 CCAATTTTCTCTTTATTGAGGAGTTTT 57.013 29.630 0.00 0.00 34.98 2.43
4953 6910 8.476657 GGAGTTTTCCTTAACATAGTACAGAC 57.523 38.462 0.00 0.00 40.58 3.51
4954 6911 7.275123 GGAGTTTTCCTTAACATAGTACAGACG 59.725 40.741 0.00 0.00 40.58 4.18
4955 6912 6.589139 AGTTTTCCTTAACATAGTACAGACGC 59.411 38.462 0.00 0.00 0.00 5.19
4956 6913 5.648178 TTCCTTAACATAGTACAGACGCA 57.352 39.130 0.00 0.00 0.00 5.24
4957 6914 5.648178 TCCTTAACATAGTACAGACGCAA 57.352 39.130 0.00 0.00 0.00 4.85
4959 6916 4.267928 CCTTAACATAGTACAGACGCAAGC 59.732 45.833 0.00 0.00 45.62 4.01
4960 6917 1.909376 ACATAGTACAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
4961 6918 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
4962 6919 0.456221 ATAGTACAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
4963 6920 0.179171 TAGTACAGACGCAAGCGCTC 60.179 55.000 12.06 11.06 44.19 5.03
4964 6921 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
4965 6922 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
4966 6923 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
4967 6924 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
4968 6925 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
4969 6926 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
4970 6927 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
4971 6928 1.190323 GACGCAAGCGCTCATACATAC 59.810 52.381 12.06 0.00 44.19 2.39
4972 6929 0.159554 CGCAAGCGCTCATACATACG 59.840 55.000 12.06 0.00 35.30 3.06
4976 6933 3.916439 CGCTCATACATACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
4977 6934 2.434688 CGCTCATACATACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
4978 6935 1.613270 CGCTCATACATACGCGCATA 58.387 50.000 5.73 0.00 39.11 3.14
4979 6936 1.317611 CGCTCATACATACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
4980 6937 2.324860 GCTCATACATACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
4981 6938 2.090658 GCTCATACATACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
4982 6939 3.565516 CTCATACATACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
4983 6940 3.561503 TCATACATACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
4984 6941 3.003897 TCATACATACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
4985 6942 2.509052 ACATACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
4986 6943 2.821546 ACATACGCGCATACACTCATT 58.178 42.857 5.73 0.00 0.00 2.57
4987 6944 2.794910 ACATACGCGCATACACTCATTC 59.205 45.455 5.73 0.00 0.00 2.67
4988 6945 1.847818 TACGCGCATACACTCATTCC 58.152 50.000 5.73 0.00 0.00 3.01
4989 6946 0.175760 ACGCGCATACACTCATTCCT 59.824 50.000 5.73 0.00 0.00 3.36
4990 6947 1.407618 ACGCGCATACACTCATTCCTA 59.592 47.619 5.73 0.00 0.00 2.94
4991 6948 2.035961 ACGCGCATACACTCATTCCTAT 59.964 45.455 5.73 0.00 0.00 2.57
4992 6949 2.409715 CGCGCATACACTCATTCCTATG 59.590 50.000 8.75 0.00 0.00 2.23
4993 6950 3.653344 GCGCATACACTCATTCCTATGA 58.347 45.455 0.30 0.00 38.45 2.15
4994 6951 4.058124 GCGCATACACTCATTCCTATGAA 58.942 43.478 0.30 0.00 40.17 2.57
4995 6952 4.084328 GCGCATACACTCATTCCTATGAAC 60.084 45.833 0.30 0.00 40.17 3.18
4996 6953 4.148871 CGCATACACTCATTCCTATGAACG 59.851 45.833 0.00 0.00 40.17 3.95
4997 6954 4.084328 GCATACACTCATTCCTATGAACGC 60.084 45.833 0.00 0.00 40.17 4.84
4998 6955 3.610040 ACACTCATTCCTATGAACGCA 57.390 42.857 0.00 0.00 40.17 5.24
4999 6956 3.262420 ACACTCATTCCTATGAACGCAC 58.738 45.455 0.00 0.00 40.17 5.34
5000 6957 3.261580 CACTCATTCCTATGAACGCACA 58.738 45.455 0.00 0.00 40.17 4.57
5001 6958 3.062639 CACTCATTCCTATGAACGCACAC 59.937 47.826 0.00 0.00 40.17 3.82
5002 6959 3.261580 CTCATTCCTATGAACGCACACA 58.738 45.455 0.00 0.00 40.17 3.72
5003 6960 3.000041 TCATTCCTATGAACGCACACAC 59.000 45.455 0.00 0.00 37.83 3.82
5004 6961 1.424403 TTCCTATGAACGCACACACG 58.576 50.000 0.00 0.00 39.50 4.49
5005 6962 1.011968 TCCTATGAACGCACACACGC 61.012 55.000 0.00 0.00 36.19 5.34
5006 6963 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
5007 6964 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
5008 6965 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
5009 6966 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
5010 6967 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
5013 6970 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
5014 6971 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
5015 6972 1.069090 CACACACGCACACCCTACT 59.931 57.895 0.00 0.00 0.00 2.57
5016 6973 0.944311 CACACACGCACACCCTACTC 60.944 60.000 0.00 0.00 0.00 2.59
5017 6974 1.374252 CACACGCACACCCTACTCC 60.374 63.158 0.00 0.00 0.00 3.85
5018 6975 1.533273 ACACGCACACCCTACTCCT 60.533 57.895 0.00 0.00 0.00 3.69
5019 6976 0.251474 ACACGCACACCCTACTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
5020 6977 1.112113 CACGCACACCCTACTCCTAT 58.888 55.000 0.00 0.00 0.00 2.57
5021 6978 1.112113 ACGCACACCCTACTCCTATG 58.888 55.000 0.00 0.00 0.00 2.23
5022 6979 1.341679 ACGCACACCCTACTCCTATGA 60.342 52.381 0.00 0.00 0.00 2.15
5023 6980 1.338337 CGCACACCCTACTCCTATGAG 59.662 57.143 0.00 0.00 44.62 2.90
5024 6981 1.069358 GCACACCCTACTCCTATGAGC 59.931 57.143 0.00 0.00 42.74 4.26
5025 6982 2.388735 CACACCCTACTCCTATGAGCA 58.611 52.381 0.00 0.00 42.74 4.26
5026 6983 2.101582 CACACCCTACTCCTATGAGCAC 59.898 54.545 0.00 0.00 42.74 4.40
5027 6984 1.689273 CACCCTACTCCTATGAGCACC 59.311 57.143 0.00 0.00 42.74 5.01
5028 6985 1.576272 ACCCTACTCCTATGAGCACCT 59.424 52.381 0.00 0.00 42.74 4.00
5029 6986 2.022918 ACCCTACTCCTATGAGCACCTT 60.023 50.000 0.00 0.00 42.74 3.50
5030 6987 3.041946 CCCTACTCCTATGAGCACCTTT 58.958 50.000 0.00 0.00 42.74 3.11
5031 6988 3.181461 CCCTACTCCTATGAGCACCTTTG 60.181 52.174 0.00 0.00 42.74 2.77
5032 6989 3.706594 CCTACTCCTATGAGCACCTTTGA 59.293 47.826 0.00 0.00 42.74 2.69
5033 6990 3.902881 ACTCCTATGAGCACCTTTGAG 57.097 47.619 0.00 0.00 42.74 3.02
5034 6991 3.445008 ACTCCTATGAGCACCTTTGAGA 58.555 45.455 0.00 0.00 42.74 3.27
5035 6992 3.450457 ACTCCTATGAGCACCTTTGAGAG 59.550 47.826 0.00 0.00 42.74 3.20
5036 6993 3.703556 CTCCTATGAGCACCTTTGAGAGA 59.296 47.826 0.00 0.00 0.00 3.10
5037 6994 3.449018 TCCTATGAGCACCTTTGAGAGAC 59.551 47.826 0.00 0.00 0.00 3.36
5038 6995 3.450457 CCTATGAGCACCTTTGAGAGACT 59.550 47.826 0.00 0.00 0.00 3.24
5039 6996 2.827800 TGAGCACCTTTGAGAGACTG 57.172 50.000 0.00 0.00 0.00 3.51
5040 6997 2.319844 TGAGCACCTTTGAGAGACTGA 58.680 47.619 0.00 0.00 0.00 3.41
5041 6998 2.298446 TGAGCACCTTTGAGAGACTGAG 59.702 50.000 0.00 0.00 0.00 3.35
5042 6999 1.001860 AGCACCTTTGAGAGACTGAGC 59.998 52.381 0.00 0.00 0.00 4.26
5043 7000 1.943507 GCACCTTTGAGAGACTGAGCC 60.944 57.143 0.00 0.00 0.00 4.70
5044 7001 0.605589 ACCTTTGAGAGACTGAGCCG 59.394 55.000 0.00 0.00 0.00 5.52
5045 7002 0.108424 CCTTTGAGAGACTGAGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
5046 7003 0.739112 CTTTGAGAGACTGAGCCGGC 60.739 60.000 21.89 21.89 0.00 6.13
5047 7004 1.471829 TTTGAGAGACTGAGCCGGCA 61.472 55.000 31.54 7.98 0.00 5.69
5048 7005 1.260538 TTGAGAGACTGAGCCGGCAT 61.261 55.000 31.54 14.28 0.00 4.40
5049 7006 0.395724 TGAGAGACTGAGCCGGCATA 60.396 55.000 31.54 16.21 0.00 3.14
5050 7007 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
5051 7008 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
5052 7009 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
5053 7010 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
5054 7011 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
5055 7012 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
5056 7013 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
5057 7014 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
5058 7015 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
5059 7016 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
5060 7017 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
5061 7018 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
5062 7019 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
5063 7020 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
5064 7021 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
5065 7022 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
5066 7023 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
5067 7024 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
5068 7025 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
5069 7026 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
5070 7027 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
5071 7028 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
5072 7029 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
5073 7030 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
5074 7031 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
5075 7032 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
5076 7033 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
5077 7034 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
5078 7035 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
5091 7048 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
5092 7049 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
5101 7058 2.666190 TCGTCGTCGAGGGAACGT 60.666 61.111 14.44 0.00 41.35 3.99
5102 7059 2.202272 CGTCGTCGAGGGAACGTC 60.202 66.667 7.05 0.00 40.21 4.34
5103 7060 2.675056 CGTCGTCGAGGGAACGTCT 61.675 63.158 7.05 0.00 41.61 4.18
5104 7061 1.134281 GTCGTCGAGGGAACGTCTC 59.866 63.158 5.12 0.00 41.61 3.36
5105 7062 2.037136 TCGTCGAGGGAACGTCTCC 61.037 63.158 5.12 7.90 41.61 3.71
5106 7063 2.039405 CGTCGAGGGAACGTCTCCT 61.039 63.158 9.10 9.10 44.68 3.69
5107 7064 1.584380 CGTCGAGGGAACGTCTCCTT 61.584 60.000 10.44 6.18 44.68 3.36
5108 7065 0.170784 GTCGAGGGAACGTCTCCTTC 59.829 60.000 14.64 14.64 45.05 3.46
5109 7066 0.964358 TCGAGGGAACGTCTCCTTCC 60.964 60.000 17.15 8.51 45.60 3.46
5110 7067 1.248785 CGAGGGAACGTCTCCTTCCA 61.249 60.000 17.15 0.00 45.60 3.53
5111 7068 0.246910 GAGGGAACGTCTCCTTCCAC 59.753 60.000 14.04 2.27 43.18 4.02
5112 7069 0.178929 AGGGAACGTCTCCTTCCACT 60.179 55.000 13.94 3.53 44.68 4.00
5113 7070 1.076677 AGGGAACGTCTCCTTCCACTA 59.923 52.381 13.94 0.00 44.68 2.74
5114 7071 1.897802 GGGAACGTCTCCTTCCACTAA 59.102 52.381 13.94 0.00 44.68 2.24
5115 7072 2.301009 GGGAACGTCTCCTTCCACTAAA 59.699 50.000 13.94 0.00 44.68 1.85
5116 7073 3.244318 GGGAACGTCTCCTTCCACTAAAA 60.244 47.826 13.94 0.00 44.68 1.52
5117 7074 4.383173 GGAACGTCTCCTTCCACTAAAAA 58.617 43.478 8.87 0.00 41.61 1.94
5118 7075 4.212847 GGAACGTCTCCTTCCACTAAAAAC 59.787 45.833 8.87 0.00 41.61 2.43
5119 7076 3.387397 ACGTCTCCTTCCACTAAAAACG 58.613 45.455 0.00 0.00 0.00 3.60
5120 7077 3.181472 ACGTCTCCTTCCACTAAAAACGT 60.181 43.478 0.00 0.00 36.16 3.99
5121 7078 4.037923 ACGTCTCCTTCCACTAAAAACGTA 59.962 41.667 0.00 0.00 38.85 3.57
5122 7079 5.166398 CGTCTCCTTCCACTAAAAACGTAT 58.834 41.667 0.00 0.00 0.00 3.06
5123 7080 5.287992 CGTCTCCTTCCACTAAAAACGTATC 59.712 44.000 0.00 0.00 0.00 2.24
5124 7081 5.287992 GTCTCCTTCCACTAAAAACGTATCG 59.712 44.000 0.00 0.00 0.00 2.92
5125 7082 3.928375 TCCTTCCACTAAAAACGTATCGC 59.072 43.478 0.00 0.00 0.00 4.58
5126 7083 3.930848 CCTTCCACTAAAAACGTATCGCT 59.069 43.478 0.00 0.00 0.00 4.93
5127 7084 5.104374 CCTTCCACTAAAAACGTATCGCTA 58.896 41.667 0.00 0.00 0.00 4.26
5128 7085 5.231568 CCTTCCACTAAAAACGTATCGCTAG 59.768 44.000 0.00 0.00 0.00 3.42
5129 7086 5.565592 TCCACTAAAAACGTATCGCTAGA 57.434 39.130 0.00 0.00 0.00 2.43
5130 7087 5.953183 TCCACTAAAAACGTATCGCTAGAA 58.047 37.500 0.00 0.00 0.00 2.10
5131 7088 6.389091 TCCACTAAAAACGTATCGCTAGAAA 58.611 36.000 0.00 0.00 0.00 2.52
5132 7089 7.037438 TCCACTAAAAACGTATCGCTAGAAAT 58.963 34.615 0.00 0.00 0.00 2.17
5133 7090 7.221452 TCCACTAAAAACGTATCGCTAGAAATC 59.779 37.037 0.00 0.00 0.00 2.17
5134 7091 7.335491 CACTAAAAACGTATCGCTAGAAATCC 58.665 38.462 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.677576 ACGCATGCCCAAGAACATATG 59.322 47.619 13.15 0.00 0.00 1.78
96 97 8.750416 CAAATGTCAAATTACAACACGAAATCA 58.250 29.630 0.00 0.00 32.02 2.57
151 152 9.847706 AAAACAAAACAAAACAAAAACAGTTCT 57.152 22.222 0.00 0.00 0.00 3.01
153 154 9.411801 ACAAAACAAAACAAAACAAAAACAGTT 57.588 22.222 0.00 0.00 0.00 3.16
160 161 8.980143 TCCAAAACAAAACAAAACAAAACAAA 57.020 23.077 0.00 0.00 0.00 2.83
161 162 8.980143 TTCCAAAACAAAACAAAACAAAACAA 57.020 23.077 0.00 0.00 0.00 2.83
162 163 9.237846 GATTCCAAAACAAAACAAAACAAAACA 57.762 25.926 0.00 0.00 0.00 2.83
163 164 8.413424 CGATTCCAAAACAAAACAAAACAAAAC 58.587 29.630 0.00 0.00 0.00 2.43
164 165 7.113544 GCGATTCCAAAACAAAACAAAACAAAA 59.886 29.630 0.00 0.00 0.00 2.44
295 552 6.598753 TTACAAAACAGAGCAGTAACTGTC 57.401 37.500 0.00 0.00 44.94 3.51
315 572 7.439204 GTCATACTGACGAAGAAGACATTAC 57.561 40.000 0.00 0.00 37.67 1.89
345 602 4.642885 CCTTCTCCTACAAGTCTACTCCAG 59.357 50.000 0.00 0.00 0.00 3.86
408 665 9.506018 CCAGAATTTTGGATGTTTTTCCTATTT 57.494 29.630 9.43 0.00 40.87 1.40
410 667 8.434589 TCCAGAATTTTGGATGTTTTTCCTAT 57.565 30.769 13.54 0.00 42.24 2.57
493 757 9.533253 ACTTTGAGGACTGATTGTTTTATTTTG 57.467 29.630 0.00 0.00 0.00 2.44
498 762 8.527810 ACAAAACTTTGAGGACTGATTGTTTTA 58.472 29.630 9.12 0.00 40.55 1.52
569 837 8.631676 TTAGGTTTTTGTAAAATTTCGTCCAC 57.368 30.769 0.00 0.00 0.00 4.02
613 881 6.899393 AAAATTCTGAGACTTTGTGGCATA 57.101 33.333 0.00 0.00 0.00 3.14
742 1463 7.285172 CCACCCTTTCAGAATTTTTGGATTTTT 59.715 33.333 0.00 0.00 0.00 1.94
784 1505 0.609131 ACGTGCATTCCTTTCCAGGG 60.609 55.000 0.00 0.00 41.25 4.45
891 1615 3.695816 TCTGAAGCGATCAATGAGTACG 58.304 45.455 0.00 0.00 37.67 3.67
1071 1830 5.047306 AGGATCGATCGGTTTATATCTTGCA 60.047 40.000 18.81 0.00 0.00 4.08
1190 1949 2.161486 CGCCGAACTCTAGCAGTGC 61.161 63.158 7.13 7.13 34.56 4.40
1199 1958 1.480219 CGTGATAAGGCGCCGAACTC 61.480 60.000 23.20 16.72 0.00 3.01
1200 1959 1.518572 CGTGATAAGGCGCCGAACT 60.519 57.895 23.20 9.78 0.00 3.01
1202 1961 1.517694 GTCGTGATAAGGCGCCGAA 60.518 57.895 23.20 14.14 0.00 4.30
1209 1968 4.115516 CAGTGATTCTGGTCGTGATAAGG 58.884 47.826 0.00 0.00 40.23 2.69
1213 1972 1.276138 TGCAGTGATTCTGGTCGTGAT 59.724 47.619 0.00 0.00 43.78 3.06
1216 1975 2.479566 AATGCAGTGATTCTGGTCGT 57.520 45.000 0.00 0.00 43.78 4.34
1236 1995 3.439540 GGCGCCCGCATTTCTTGA 61.440 61.111 18.11 0.00 44.11 3.02
1264 2023 2.794166 CACACCGACGACGACGAC 60.794 66.667 20.63 7.02 42.66 4.34
1267 2026 2.799916 GAGCACACCGACGACGAC 60.800 66.667 9.28 0.00 42.66 4.34
1355 2114 1.305623 GTGTAGTCCCCTCCTCCGA 59.694 63.158 0.00 0.00 0.00 4.55
1434 2193 0.983467 TGTAGCTCCCATGCTTGACA 59.017 50.000 0.22 0.00 43.74 3.58
1443 2202 1.972198 CACGAACCTGTAGCTCCCA 59.028 57.895 0.00 0.00 0.00 4.37
1493 2252 3.717749 GCAAATGCGCACAAATAAACGAC 60.718 43.478 14.90 0.00 0.00 4.34
1635 2394 3.665544 GCAGACTGCCTCATCTCTC 57.334 57.895 17.01 0.00 37.42 3.20
1695 2454 7.012421 CCAACCCAAGACTAATATAAGCTCAAC 59.988 40.741 0.00 0.00 0.00 3.18
1781 2540 2.939103 GACTCTCCGTGCATTGCTTATT 59.061 45.455 10.49 0.00 0.00 1.40
1824 2587 5.355596 TCATCAAGCAACCGAAAACAAAAT 58.644 33.333 0.00 0.00 0.00 1.82
1851 2614 1.229428 CACTTCATCACACAACGGCT 58.771 50.000 0.00 0.00 0.00 5.52
1934 2706 6.363065 ACTAGAATGATCATGGAGCATTTGT 58.637 36.000 9.46 7.91 46.50 2.83
2031 2878 4.216687 GGGAAATCACGTGGTATGTCAAAA 59.783 41.667 17.00 0.00 0.00 2.44
2032 2879 3.754323 GGGAAATCACGTGGTATGTCAAA 59.246 43.478 17.00 0.00 0.00 2.69
2066 2919 7.417612 ACATATCTTGTGTGTCTCAACAAAAC 58.582 34.615 0.00 0.00 37.11 2.43
2067 2920 7.566760 ACATATCTTGTGTGTCTCAACAAAA 57.433 32.000 0.00 0.00 37.11 2.44
2068 2921 8.846943 ATACATATCTTGTGTGTCTCAACAAA 57.153 30.769 0.00 0.00 39.48 2.83
2069 2922 8.846943 AATACATATCTTGTGTGTCTCAACAA 57.153 30.769 0.00 0.00 39.48 2.83
2070 2923 8.846943 AAATACATATCTTGTGTGTCTCAACA 57.153 30.769 0.00 0.00 39.48 3.33
2075 2928 9.751542 GCTAGTAAATACATATCTTGTGTGTCT 57.248 33.333 0.00 0.00 39.48 3.41
2076 2929 9.529325 TGCTAGTAAATACATATCTTGTGTGTC 57.471 33.333 0.00 0.00 39.48 3.67
2621 3775 8.193953 ACCCATTCATATTTTGAGTCAAACTT 57.806 30.769 17.85 10.95 35.27 2.66
2656 3833 3.701542 AGATGTTGAAGCCTCGACTGATA 59.298 43.478 4.34 0.00 36.95 2.15
2771 4366 8.998558 AAACACTTTTAGATACAACGTTAAGC 57.001 30.769 0.00 0.00 0.00 3.09
2823 4418 4.632538 AACTGTTAGCACTGAAACCAAC 57.367 40.909 0.00 0.00 0.00 3.77
2830 4425 6.636705 ACCGAAATATAACTGTTAGCACTGA 58.363 36.000 6.40 0.00 0.00 3.41
2944 4566 1.003580 TCGAGCAAGATGAAGCCCTTT 59.996 47.619 0.00 0.00 0.00 3.11
3105 4727 3.226346 CGAAGTTGTCGGAATGGACTA 57.774 47.619 0.00 0.00 46.45 2.59
3187 4847 5.718649 ATACTAGTTGCATTGCGTGTAAG 57.281 39.130 0.00 0.73 32.88 2.34
3234 4894 6.432162 AGCCACACCTTTAATATAGCATCATG 59.568 38.462 0.00 0.00 0.00 3.07
3244 4904 5.027460 TGAGACCTAGCCACACCTTTAATA 58.973 41.667 0.00 0.00 0.00 0.98
3245 4905 3.844211 TGAGACCTAGCCACACCTTTAAT 59.156 43.478 0.00 0.00 0.00 1.40
3251 4911 0.533032 GACTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 0.00 4.16
3259 4919 8.749026 ATTAAATCTTAGTCGACTGAGACCTA 57.251 34.615 34.32 25.67 40.68 3.08
3262 4922 8.912787 TTGATTAAATCTTAGTCGACTGAGAC 57.087 34.615 34.32 23.10 40.68 3.36
3292 4952 8.251026 TCTCTTGTATGGTATGTCACTTAACTG 58.749 37.037 0.00 0.00 0.00 3.16
3299 4959 7.548097 TCTTTCTCTCTTGTATGGTATGTCAC 58.452 38.462 0.00 0.00 0.00 3.67
3302 4962 9.793259 TTTTTCTTTCTCTCTTGTATGGTATGT 57.207 29.630 0.00 0.00 0.00 2.29
3307 4967 8.159344 ACAGTTTTTCTTTCTCTCTTGTATGG 57.841 34.615 0.00 0.00 0.00 2.74
3312 4972 9.631452 AAAAAGACAGTTTTTCTTTCTCTCTTG 57.369 29.630 0.00 0.00 41.48 3.02
3374 5036 3.871594 CCCAACGAAGTCTCAATGGATAC 59.128 47.826 0.00 0.00 45.00 2.24
3379 5041 3.045601 AGACCCAACGAAGTCTCAATG 57.954 47.619 0.00 0.00 45.00 2.82
3391 5053 2.231478 TCTCAGTTGATCGAGACCCAAC 59.769 50.000 12.10 12.10 40.14 3.77
3393 5055 2.215942 TCTCAGTTGATCGAGACCCA 57.784 50.000 0.00 0.00 33.37 4.51
3397 5059 4.010349 TGCTAAGTCTCAGTTGATCGAGA 58.990 43.478 0.00 0.00 35.93 4.04
3402 5064 5.011533 ACAGTCTTGCTAAGTCTCAGTTGAT 59.988 40.000 0.00 0.00 0.00 2.57
3405 5067 4.946478 ACAGTCTTGCTAAGTCTCAGTT 57.054 40.909 0.00 0.00 0.00 3.16
3409 5071 5.385509 AGAGAACAGTCTTGCTAAGTCTC 57.614 43.478 0.00 0.00 32.80 3.36
3654 5319 1.215382 CGCCATGTTCGACTGGAGA 59.785 57.895 11.13 0.00 34.61 3.71
3663 5328 3.849953 GACGACGCCGCCATGTTC 61.850 66.667 0.00 0.00 39.95 3.18
3912 5580 4.192000 GCACAGAGTATGCGCACT 57.808 55.556 14.90 6.13 36.93 4.40
3972 5652 1.748493 GTCACTTGTGACCTGCCAAAA 59.252 47.619 19.77 0.00 32.97 2.44
4033 5713 2.270205 CCATGGCACTCTTCCGCT 59.730 61.111 0.00 0.00 0.00 5.52
4074 5754 0.678950 TGTCCACGAATCTCTGCACA 59.321 50.000 0.00 0.00 0.00 4.57
4131 5811 1.302192 GTGGGCGAGCCACAACTAA 60.302 57.895 16.65 0.00 38.01 2.24
4157 5848 4.463050 TCCATCCACAACTAGGGTTTTT 57.537 40.909 0.00 0.00 32.73 1.94
4158 5849 4.675063 ATCCATCCACAACTAGGGTTTT 57.325 40.909 0.00 0.00 32.73 2.43
4174 5865 4.283467 TGTATTTCGCCACTAGCTATCCAT 59.717 41.667 0.00 0.00 40.39 3.41
4175 5866 3.639561 TGTATTTCGCCACTAGCTATCCA 59.360 43.478 0.00 0.00 40.39 3.41
4187 5888 0.463116 ACATCCGGGTGTATTTCGCC 60.463 55.000 21.57 0.00 45.27 5.54
4198 5899 4.968259 TGAACCTTGAATATACATCCGGG 58.032 43.478 0.00 0.00 0.00 5.73
4201 5902 7.173907 CAGACCATGAACCTTGAATATACATCC 59.826 40.741 0.00 0.00 0.00 3.51
4235 5939 0.623617 TCCTAAGCCCTTCTTCCCCC 60.624 60.000 0.00 0.00 36.25 5.40
4320 6025 6.652481 CAGAGAGGCCCATACATATAAACTTG 59.348 42.308 0.00 0.00 0.00 3.16
4434 6140 3.066621 GCATGCGAAGTCCATAATTTCCA 59.933 43.478 0.00 0.00 0.00 3.53
4436 6142 4.291540 TGCATGCGAAGTCCATAATTTC 57.708 40.909 14.09 0.00 0.00 2.17
4450 6156 1.928503 CAGCCCTTAAAAATGCATGCG 59.071 47.619 14.09 0.00 0.00 4.73
4462 6168 5.497474 GAGTCAATAGGAAAACAGCCCTTA 58.503 41.667 0.00 0.00 34.11 2.69
4464 6170 3.308473 GGAGTCAATAGGAAAACAGCCCT 60.308 47.826 0.00 0.00 36.60 5.19
4467 6173 4.154918 CACTGGAGTCAATAGGAAAACAGC 59.845 45.833 0.00 0.00 0.00 4.40
4468 6174 4.154918 GCACTGGAGTCAATAGGAAAACAG 59.845 45.833 0.00 0.00 0.00 3.16
4469 6175 4.072131 GCACTGGAGTCAATAGGAAAACA 58.928 43.478 0.00 0.00 0.00 2.83
4470 6176 3.440522 GGCACTGGAGTCAATAGGAAAAC 59.559 47.826 0.00 0.00 0.00 2.43
4490 6199 8.190122 TCACACAAAGAAATATGTATTCATGGC 58.810 33.333 0.00 0.00 35.70 4.40
4515 6224 6.619801 ATTAATATCGCCAGTTTGGAGTTC 57.380 37.500 0.00 0.00 40.96 3.01
4524 6233 8.445275 TTCACAACAATATTAATATCGCCAGT 57.555 30.769 8.42 2.49 0.00 4.00
4567 6524 1.312371 AAATCACGGGCCGGATGTTG 61.312 55.000 31.78 18.91 0.00 3.33
4619 6576 7.014230 ACAAGTGCTAACCAAATAAGTGTTCAT 59.986 33.333 0.00 0.00 0.00 2.57
4636 6593 8.615878 TTTCTTTGATAAGCTAACAAGTGCTA 57.384 30.769 0.00 0.00 38.75 3.49
4709 6666 9.601217 TGAATTTTTCATCGGTTTTCCTTAAAA 57.399 25.926 0.00 0.00 34.40 1.52
4710 6667 9.255304 CTGAATTTTTCATCGGTTTTCCTTAAA 57.745 29.630 0.00 0.00 39.30 1.52
4711 6668 8.634444 TCTGAATTTTTCATCGGTTTTCCTTAA 58.366 29.630 0.00 0.00 39.30 1.85
4712 6669 8.172352 TCTGAATTTTTCATCGGTTTTCCTTA 57.828 30.769 0.00 0.00 39.30 2.69
4713 6670 7.014230 TCTCTGAATTTTTCATCGGTTTTCCTT 59.986 33.333 0.00 0.00 39.30 3.36
4714 6671 6.490040 TCTCTGAATTTTTCATCGGTTTTCCT 59.510 34.615 0.00 0.00 39.30 3.36
4715 6672 6.677913 TCTCTGAATTTTTCATCGGTTTTCC 58.322 36.000 0.00 0.00 39.30 3.13
4716 6673 7.217070 CGATCTCTGAATTTTTCATCGGTTTTC 59.783 37.037 0.00 0.00 39.30 2.29
4717 6674 7.023575 CGATCTCTGAATTTTTCATCGGTTTT 58.976 34.615 0.00 0.00 39.30 2.43
4718 6675 6.371548 TCGATCTCTGAATTTTTCATCGGTTT 59.628 34.615 9.68 0.00 38.38 3.27
4719 6676 5.874810 TCGATCTCTGAATTTTTCATCGGTT 59.125 36.000 9.68 0.00 38.38 4.44
4720 6677 5.419542 TCGATCTCTGAATTTTTCATCGGT 58.580 37.500 9.68 0.00 38.38 4.69
4721 6678 5.973651 TCGATCTCTGAATTTTTCATCGG 57.026 39.130 9.68 0.00 38.38 4.18
4722 6679 7.226757 TCTTCGATCTCTGAATTTTTCATCG 57.773 36.000 5.18 5.18 38.88 3.84
4870 6827 0.905357 ACCTCTTCCTTCGTCCCATG 59.095 55.000 0.00 0.00 0.00 3.66
4871 6828 0.905357 CACCTCTTCCTTCGTCCCAT 59.095 55.000 0.00 0.00 0.00 4.00
4872 6829 1.192146 CCACCTCTTCCTTCGTCCCA 61.192 60.000 0.00 0.00 0.00 4.37
4873 6830 1.597461 CCACCTCTTCCTTCGTCCC 59.403 63.158 0.00 0.00 0.00 4.46
4874 6831 1.079057 GCCACCTCTTCCTTCGTCC 60.079 63.158 0.00 0.00 0.00 4.79
4875 6832 1.079057 GGCCACCTCTTCCTTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
4876 6833 1.201429 ATGGCCACCTCTTCCTTCGT 61.201 55.000 8.16 0.00 0.00 3.85
4877 6834 0.035056 AATGGCCACCTCTTCCTTCG 60.035 55.000 8.16 0.00 0.00 3.79
4878 6835 2.422093 CCTAATGGCCACCTCTTCCTTC 60.422 54.545 8.16 0.00 0.00 3.46
4879 6836 1.566231 CCTAATGGCCACCTCTTCCTT 59.434 52.381 8.16 0.00 0.00 3.36
4880 6837 1.216990 CCTAATGGCCACCTCTTCCT 58.783 55.000 8.16 0.00 0.00 3.36
4881 6838 1.213296 TCCTAATGGCCACCTCTTCC 58.787 55.000 8.16 0.00 0.00 3.46
4882 6839 3.366052 TTTCCTAATGGCCACCTCTTC 57.634 47.619 8.16 0.00 0.00 2.87
4883 6840 5.466127 TTATTTCCTAATGGCCACCTCTT 57.534 39.130 8.16 0.00 0.00 2.85
4884 6841 5.044105 ACTTTATTTCCTAATGGCCACCTCT 60.044 40.000 8.16 0.00 0.00 3.69
4885 6842 5.201243 ACTTTATTTCCTAATGGCCACCTC 58.799 41.667 8.16 0.00 0.00 3.85
4886 6843 5.201243 GACTTTATTTCCTAATGGCCACCT 58.799 41.667 8.16 0.00 0.00 4.00
4887 6844 4.341235 GGACTTTATTTCCTAATGGCCACC 59.659 45.833 8.16 0.00 40.73 4.61
4888 6845 4.953579 TGGACTTTATTTCCTAATGGCCAC 59.046 41.667 8.16 0.00 44.03 5.01
4889 6846 5.199982 TGGACTTTATTTCCTAATGGCCA 57.800 39.130 8.56 8.56 45.74 5.36
4890 6847 6.731292 ATTGGACTTTATTTCCTAATGGCC 57.269 37.500 0.00 0.00 41.20 5.36
4891 6848 9.098355 GAAAATTGGACTTTATTTCCTAATGGC 57.902 33.333 0.00 0.00 33.84 4.40
4904 6861 9.367160 TCCTCAATAAAGAGAAAATTGGACTTT 57.633 29.630 0.00 0.00 37.87 2.66
4905 6862 8.940397 TCCTCAATAAAGAGAAAATTGGACTT 57.060 30.769 0.00 0.00 37.87 3.01
4906 6863 8.166726 ACTCCTCAATAAAGAGAAAATTGGACT 58.833 33.333 0.00 0.00 37.87 3.85
4907 6864 8.341892 ACTCCTCAATAAAGAGAAAATTGGAC 57.658 34.615 0.00 0.00 37.87 4.02
4908 6865 8.940397 AACTCCTCAATAAAGAGAAAATTGGA 57.060 30.769 0.00 0.00 37.87 3.53
4909 6866 9.987272 AAAACTCCTCAATAAAGAGAAAATTGG 57.013 29.630 0.00 0.00 37.87 3.16
4912 6869 9.593565 AGGAAAACTCCTCAATAAAGAGAAAAT 57.406 29.630 0.00 0.00 37.87 1.82
4913 6870 8.996651 AGGAAAACTCCTCAATAAAGAGAAAA 57.003 30.769 0.00 0.00 37.87 2.29
4914 6871 8.996651 AAGGAAAACTCCTCAATAAAGAGAAA 57.003 30.769 0.00 0.00 39.65 2.52
4916 6873 9.503399 GTTAAGGAAAACTCCTCAATAAAGAGA 57.497 33.333 0.00 0.00 39.65 3.10
4917 6874 9.284968 TGTTAAGGAAAACTCCTCAATAAAGAG 57.715 33.333 0.00 0.00 39.65 2.85
4918 6875 9.807921 ATGTTAAGGAAAACTCCTCAATAAAGA 57.192 29.630 0.00 0.00 39.65 2.52
4923 6880 9.668497 GTACTATGTTAAGGAAAACTCCTCAAT 57.332 33.333 0.00 0.00 39.65 2.57
4924 6881 8.653191 TGTACTATGTTAAGGAAAACTCCTCAA 58.347 33.333 0.00 0.00 39.65 3.02
4925 6882 8.197592 TGTACTATGTTAAGGAAAACTCCTCA 57.802 34.615 0.00 0.00 39.65 3.86
4926 6883 8.529476 TCTGTACTATGTTAAGGAAAACTCCTC 58.471 37.037 0.00 0.00 39.65 3.71
4927 6884 8.312564 GTCTGTACTATGTTAAGGAAAACTCCT 58.687 37.037 0.00 0.00 43.04 3.69
4928 6885 7.275123 CGTCTGTACTATGTTAAGGAAAACTCC 59.725 40.741 0.00 0.00 0.00 3.85
4929 6886 7.201418 GCGTCTGTACTATGTTAAGGAAAACTC 60.201 40.741 0.00 0.00 0.00 3.01
4930 6887 6.589139 GCGTCTGTACTATGTTAAGGAAAACT 59.411 38.462 0.00 0.00 0.00 2.66
4931 6888 6.366877 TGCGTCTGTACTATGTTAAGGAAAAC 59.633 38.462 0.00 0.00 0.00 2.43
4932 6889 6.457355 TGCGTCTGTACTATGTTAAGGAAAA 58.543 36.000 0.00 0.00 0.00 2.29
4933 6890 6.028146 TGCGTCTGTACTATGTTAAGGAAA 57.972 37.500 0.00 0.00 0.00 3.13
4934 6891 5.648178 TGCGTCTGTACTATGTTAAGGAA 57.352 39.130 0.00 0.00 0.00 3.36
4935 6892 5.647589 CTTGCGTCTGTACTATGTTAAGGA 58.352 41.667 0.00 0.00 0.00 3.36
4936 6893 4.267928 GCTTGCGTCTGTACTATGTTAAGG 59.732 45.833 0.00 0.00 0.00 2.69
4937 6894 4.027621 CGCTTGCGTCTGTACTATGTTAAG 60.028 45.833 6.86 0.00 0.00 1.85
4938 6895 3.855379 CGCTTGCGTCTGTACTATGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
4939 6896 3.431856 CGCTTGCGTCTGTACTATGTTA 58.568 45.455 6.86 0.00 0.00 2.41
4940 6897 2.259618 CGCTTGCGTCTGTACTATGTT 58.740 47.619 6.86 0.00 0.00 2.71
4941 6898 1.909376 CGCTTGCGTCTGTACTATGT 58.091 50.000 6.86 0.00 0.00 2.29
4942 6899 0.572590 GCGCTTGCGTCTGTACTATG 59.427 55.000 16.38 0.00 0.00 2.23
4943 6900 0.456221 AGCGCTTGCGTCTGTACTAT 59.544 50.000 16.38 0.00 45.69 2.12
4944 6901 0.179171 GAGCGCTTGCGTCTGTACTA 60.179 55.000 13.26 0.00 45.69 1.82
4945 6902 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
4946 6903 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
4947 6904 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
4948 6905 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
4949 6906 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
4950 6907 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
4951 6908 1.190323 GTATGTATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
4952 6909 1.209128 GTATGTATGAGCGCTTGCGT 58.791 50.000 13.26 3.97 45.69 5.24
4953 6910 0.159554 CGTATGTATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
4954 6911 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
4955 6912 0.159554 CGCGTATGTATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
4956 6913 2.506544 CGCGTATGTATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
4957 6914 4.228451 CGCGTATGTATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
4960 6917 2.090658 GTGTATGCGCGTATGTATGAGC 59.909 50.000 20.45 0.00 38.31 4.26
4961 6918 3.565516 AGTGTATGCGCGTATGTATGAG 58.434 45.455 20.45 0.00 0.00 2.90
4962 6919 3.003897 TGAGTGTATGCGCGTATGTATGA 59.996 43.478 20.45 0.00 0.00 2.15
4963 6920 3.305110 TGAGTGTATGCGCGTATGTATG 58.695 45.455 20.45 0.00 0.00 2.39
4964 6921 3.636282 TGAGTGTATGCGCGTATGTAT 57.364 42.857 20.45 2.87 0.00 2.29
4965 6922 3.636282 ATGAGTGTATGCGCGTATGTA 57.364 42.857 20.45 5.53 0.00 2.29
4966 6923 2.509052 ATGAGTGTATGCGCGTATGT 57.491 45.000 20.45 0.00 0.00 2.29
4967 6924 2.155732 GGAATGAGTGTATGCGCGTATG 59.844 50.000 20.45 0.00 0.00 2.39
4968 6925 2.035961 AGGAATGAGTGTATGCGCGTAT 59.964 45.455 15.52 15.52 0.00 3.06
4969 6926 1.407618 AGGAATGAGTGTATGCGCGTA 59.592 47.619 8.43 4.92 0.00 4.42
4970 6927 0.175760 AGGAATGAGTGTATGCGCGT 59.824 50.000 8.43 7.55 0.00 6.01
4971 6928 2.134201 TAGGAATGAGTGTATGCGCG 57.866 50.000 0.00 0.00 0.00 6.86
4972 6929 3.653344 TCATAGGAATGAGTGTATGCGC 58.347 45.455 0.00 0.00 37.20 6.09
4973 6930 4.148871 CGTTCATAGGAATGAGTGTATGCG 59.851 45.833 3.19 0.00 42.97 4.73
4974 6931 4.084328 GCGTTCATAGGAATGAGTGTATGC 60.084 45.833 13.33 0.00 42.97 3.14
4975 6932 5.049828 TGCGTTCATAGGAATGAGTGTATG 58.950 41.667 13.33 0.00 42.97 2.39
4976 6933 5.050490 GTGCGTTCATAGGAATGAGTGTAT 58.950 41.667 13.33 0.00 42.97 2.29
4977 6934 4.081917 TGTGCGTTCATAGGAATGAGTGTA 60.082 41.667 13.33 0.00 42.97 2.90
4978 6935 3.262420 GTGCGTTCATAGGAATGAGTGT 58.738 45.455 13.33 0.00 42.97 3.55
4979 6936 3.062639 GTGTGCGTTCATAGGAATGAGTG 59.937 47.826 13.33 0.00 42.97 3.51
4980 6937 3.262420 GTGTGCGTTCATAGGAATGAGT 58.738 45.455 13.33 0.00 42.97 3.41
4981 6938 3.062639 GTGTGTGCGTTCATAGGAATGAG 59.937 47.826 13.33 0.26 42.97 2.90
4982 6939 3.000041 GTGTGTGCGTTCATAGGAATGA 59.000 45.455 13.33 0.00 41.62 2.57
4983 6940 2.222796 CGTGTGTGCGTTCATAGGAATG 60.223 50.000 4.97 4.97 41.92 2.67
4984 6941 1.999735 CGTGTGTGCGTTCATAGGAAT 59.000 47.619 0.00 0.00 35.05 3.01
4985 6942 1.424403 CGTGTGTGCGTTCATAGGAA 58.576 50.000 0.00 0.00 0.00 3.36
4986 6943 1.011968 GCGTGTGTGCGTTCATAGGA 61.012 55.000 0.00 0.00 0.00 2.94
4987 6944 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
4988 6945 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
4989 6946 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
4990 6947 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
4991 6948 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
4992 6949 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
4993 6950 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
4996 6953 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
4997 6954 0.944311 GAGTAGGGTGTGCGTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
4998 6955 1.366366 GAGTAGGGTGTGCGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
4999 6956 1.374252 GGAGTAGGGTGTGCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
5000 6957 0.251474 TAGGAGTAGGGTGTGCGTGT 60.251 55.000 0.00 0.00 0.00 4.49
5001 6958 1.112113 ATAGGAGTAGGGTGTGCGTG 58.888 55.000 0.00 0.00 0.00 5.34
5002 6959 1.112113 CATAGGAGTAGGGTGTGCGT 58.888 55.000 0.00 0.00 0.00 5.24
5003 6960 1.338337 CTCATAGGAGTAGGGTGTGCG 59.662 57.143 0.00 0.00 36.36 5.34
5004 6961 1.069358 GCTCATAGGAGTAGGGTGTGC 59.931 57.143 6.23 0.00 43.37 4.57
5005 6962 2.101582 GTGCTCATAGGAGTAGGGTGTG 59.898 54.545 6.23 0.00 43.37 3.82
5006 6963 2.389715 GTGCTCATAGGAGTAGGGTGT 58.610 52.381 6.23 0.00 43.37 4.16
5007 6964 1.689273 GGTGCTCATAGGAGTAGGGTG 59.311 57.143 6.23 0.00 43.37 4.61
5008 6965 1.576272 AGGTGCTCATAGGAGTAGGGT 59.424 52.381 6.23 0.00 43.37 4.34
5009 6966 2.390225 AGGTGCTCATAGGAGTAGGG 57.610 55.000 6.23 0.00 43.37 3.53
5010 6967 3.706594 TCAAAGGTGCTCATAGGAGTAGG 59.293 47.826 6.23 0.00 43.37 3.18
5011 6968 4.646945 TCTCAAAGGTGCTCATAGGAGTAG 59.353 45.833 6.23 0.00 43.37 2.57
5012 6969 4.610333 TCTCAAAGGTGCTCATAGGAGTA 58.390 43.478 6.23 0.00 43.37 2.59
5013 6970 3.445008 TCTCAAAGGTGCTCATAGGAGT 58.555 45.455 6.23 0.00 43.37 3.85
5014 6971 3.703556 TCTCTCAAAGGTGCTCATAGGAG 59.296 47.826 0.00 0.00 44.33 3.69
5015 6972 3.449018 GTCTCTCAAAGGTGCTCATAGGA 59.551 47.826 0.00 0.00 0.00 2.94
5016 6973 3.450457 AGTCTCTCAAAGGTGCTCATAGG 59.550 47.826 0.00 0.00 0.00 2.57
5017 6974 4.159321 TCAGTCTCTCAAAGGTGCTCATAG 59.841 45.833 0.00 0.00 0.00 2.23
5018 6975 4.089361 TCAGTCTCTCAAAGGTGCTCATA 58.911 43.478 0.00 0.00 0.00 2.15
5019 6976 2.902486 TCAGTCTCTCAAAGGTGCTCAT 59.098 45.455 0.00 0.00 0.00 2.90
5020 6977 2.298446 CTCAGTCTCTCAAAGGTGCTCA 59.702 50.000 0.00 0.00 0.00 4.26
5021 6978 2.930455 GCTCAGTCTCTCAAAGGTGCTC 60.930 54.545 0.00 0.00 0.00 4.26
5022 6979 1.001860 GCTCAGTCTCTCAAAGGTGCT 59.998 52.381 0.00 0.00 0.00 4.40
5023 6980 1.437625 GCTCAGTCTCTCAAAGGTGC 58.562 55.000 0.00 0.00 0.00 5.01
5024 6981 1.671261 CGGCTCAGTCTCTCAAAGGTG 60.671 57.143 0.00 0.00 0.00 4.00
5025 6982 0.605589 CGGCTCAGTCTCTCAAAGGT 59.394 55.000 0.00 0.00 0.00 3.50
5026 6983 0.108424 CCGGCTCAGTCTCTCAAAGG 60.108 60.000 0.00 0.00 0.00 3.11
5027 6984 0.739112 GCCGGCTCAGTCTCTCAAAG 60.739 60.000 22.15 0.00 0.00 2.77
5028 6985 1.293498 GCCGGCTCAGTCTCTCAAA 59.707 57.895 22.15 0.00 0.00 2.69
5029 6986 1.260538 ATGCCGGCTCAGTCTCTCAA 61.261 55.000 29.70 1.81 0.00 3.02
5030 6987 0.395724 TATGCCGGCTCAGTCTCTCA 60.396 55.000 29.70 2.45 0.00 3.27
5031 6988 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
5032 6989 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
5033 6990 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
5034 6991 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
5035 6992 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
5036 6993 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
5037 6994 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
5038 6995 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
5039 6996 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
5040 6997 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
5041 6998 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
5042 6999 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
5043 7000 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
5044 7001 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
5045 7002 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
5046 7003 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
5047 7004 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
5048 7005 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
5049 7006 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
5050 7007 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
5051 7008 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
5052 7009 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
5053 7010 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
5054 7011 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
5055 7012 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
5056 7013 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
5057 7014 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
5058 7015 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
5059 7016 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
5060 7017 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
5061 7018 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
5062 7019 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
5063 7020 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
5064 7021 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
5065 7022 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
5066 7023 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
5069 7026 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
5071 7028 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
5074 7031 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
5084 7041 2.666190 ACGTTCCCTCGACGACGA 60.666 61.111 9.98 9.98 46.56 4.20
5085 7042 2.202272 GACGTTCCCTCGACGACG 60.202 66.667 0.00 0.00 42.82 5.12
5086 7043 1.134281 GAGACGTTCCCTCGACGAC 59.866 63.158 3.48 0.00 42.82 4.34
5087 7044 2.037136 GGAGACGTTCCCTCGACGA 61.037 63.158 3.48 0.00 42.82 4.20
5088 7045 2.484203 GGAGACGTTCCCTCGACG 59.516 66.667 0.00 0.00 45.46 5.12
5096 7053 4.084693 CGTTTTTAGTGGAAGGAGACGTTC 60.085 45.833 0.00 0.00 0.00 3.95
5097 7054 3.805971 CGTTTTTAGTGGAAGGAGACGTT 59.194 43.478 0.00 0.00 0.00 3.99
5098 7055 3.181472 ACGTTTTTAGTGGAAGGAGACGT 60.181 43.478 0.00 0.00 36.52 4.34
5099 7056 3.387397 ACGTTTTTAGTGGAAGGAGACG 58.613 45.455 0.00 0.00 0.00 4.18
5100 7057 5.287992 CGATACGTTTTTAGTGGAAGGAGAC 59.712 44.000 0.00 0.00 0.00 3.36
5101 7058 5.404946 CGATACGTTTTTAGTGGAAGGAGA 58.595 41.667 0.00 0.00 0.00 3.71
5102 7059 4.032558 GCGATACGTTTTTAGTGGAAGGAG 59.967 45.833 0.00 0.00 0.00 3.69
5103 7060 3.928375 GCGATACGTTTTTAGTGGAAGGA 59.072 43.478 0.00 0.00 0.00 3.36
5104 7061 3.930848 AGCGATACGTTTTTAGTGGAAGG 59.069 43.478 0.00 0.00 0.00 3.46
5105 7062 6.032094 TCTAGCGATACGTTTTTAGTGGAAG 58.968 40.000 0.00 0.00 0.00 3.46
5106 7063 5.953183 TCTAGCGATACGTTTTTAGTGGAA 58.047 37.500 0.00 0.00 0.00 3.53
5107 7064 5.565592 TCTAGCGATACGTTTTTAGTGGA 57.434 39.130 0.00 0.00 0.00 4.02
5108 7065 6.636666 TTTCTAGCGATACGTTTTTAGTGG 57.363 37.500 0.00 0.00 0.00 4.00
5109 7066 7.335491 GGATTTCTAGCGATACGTTTTTAGTG 58.665 38.462 0.00 0.00 0.00 2.74
5110 7067 7.460751 GGATTTCTAGCGATACGTTTTTAGT 57.539 36.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.