Multiple sequence alignment - TraesCS2D01G137300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G137300 chr2D 100.000 4252 0 0 1 4252 80822640 80818389 0.000000e+00 7853.0
1 TraesCS2D01G137300 chr2D 98.392 1493 23 1 2760 4252 80782483 80780992 0.000000e+00 2623.0
2 TraesCS2D01G137300 chr2D 91.632 1948 84 35 854 2765 80784719 80782815 0.000000e+00 2621.0
3 TraesCS2D01G137300 chr2D 85.223 291 37 5 3964 4251 305621980 305621693 1.160000e-75 294.0
4 TraesCS2D01G137300 chr2D 81.818 352 27 20 3623 3962 368791078 368790752 1.170000e-65 261.0
5 TraesCS2D01G137300 chr2D 94.488 127 7 0 2 128 577086079 577085953 3.350000e-46 196.0
6 TraesCS2D01G137300 chr2B 92.921 1780 80 9 1009 2765 132516917 132518673 0.000000e+00 2547.0
7 TraesCS2D01G137300 chr2B 93.307 508 31 3 2760 3265 132519005 132519511 0.000000e+00 747.0
8 TraesCS2D01G137300 chr2B 93.629 361 18 3 646 1006 132516419 132516774 6.260000e-148 534.0
9 TraesCS2D01G137300 chr2B 92.230 296 20 2 3264 3559 132560825 132560533 2.370000e-112 416.0
10 TraesCS2D01G137300 chr2B 92.230 296 20 2 3264 3559 132563907 132563615 2.370000e-112 416.0
11 TraesCS2D01G137300 chr2B 86.598 291 28 7 3964 4251 354881630 354881912 1.150000e-80 311.0
12 TraesCS2D01G137300 chr2B 80.833 360 40 15 3617 3962 752593382 752593038 5.460000e-64 255.0
13 TraesCS2D01G137300 chr7D 85.808 613 70 7 1089 1688 47453994 47454602 6.000000e-178 634.0
14 TraesCS2D01G137300 chr7D 80.800 375 58 8 2790 3161 47455699 47456062 9.000000e-72 281.0
15 TraesCS2D01G137300 chr7A 85.096 624 76 7 1078 1688 49991265 49990646 4.670000e-174 621.0
16 TraesCS2D01G137300 chr7A 78.709 728 143 2 2034 2749 49990657 49989930 3.850000e-130 475.0
17 TraesCS2D01G137300 chr7A 93.750 128 8 0 1 128 729525312 729525439 4.340000e-45 193.0
18 TraesCS2D01G137300 chr7A 80.583 103 13 7 1816 1915 636898036 636898134 5.900000e-09 73.1
19 TraesCS2D01G137300 chr4A 78.846 728 142 2 2034 2749 662201876 662201149 8.270000e-132 481.0
20 TraesCS2D01G137300 chr4A 80.319 376 61 7 2790 3161 662200768 662200402 5.420000e-69 272.0
21 TraesCS2D01G137300 chr4A 93.750 128 8 0 1 128 506279821 506279694 4.340000e-45 193.0
22 TraesCS2D01G137300 chr4A 92.424 132 10 0 1 132 552259482 552259613 5.610000e-44 189.0
23 TraesCS2D01G137300 chr2A 88.014 292 29 6 3964 4251 361377366 361377077 1.460000e-89 340.0
24 TraesCS2D01G137300 chr2A 94.574 129 5 2 1 128 768425378 768425505 9.330000e-47 198.0
25 TraesCS2D01G137300 chr2A 77.311 238 37 11 1096 1323 43282247 43282017 1.610000e-24 124.0
26 TraesCS2D01G137300 chr2A 77.178 241 38 10 1096 1326 43288284 43288051 1.610000e-24 124.0
27 TraesCS2D01G137300 chr5D 87.333 300 29 8 3958 4251 213466867 213466571 6.810000e-88 335.0
28 TraesCS2D01G137300 chr5D 79.710 138 24 4 509 645 420464252 420464118 3.500000e-16 97.1
29 TraesCS2D01G137300 chr5D 90.698 43 4 0 582 624 565910961 565911003 1.650000e-04 58.4
30 TraesCS2D01G137300 chr5A 85.911 291 34 7 3966 4251 277693531 277693243 1.920000e-78 303.0
31 TraesCS2D01G137300 chr3B 85.424 295 34 9 3964 4251 389800252 389800544 8.940000e-77 298.0
32 TraesCS2D01G137300 chr3B 92.481 133 10 0 1 133 34647561 34647429 1.560000e-44 191.0
33 TraesCS2D01G137300 chr3B 80.714 140 26 1 509 647 627198040 627198179 1.620000e-19 108.0
34 TraesCS2D01G137300 chr3D 85.274 292 38 5 3965 4252 272256768 272257058 3.210000e-76 296.0
35 TraesCS2D01G137300 chr3D 79.032 186 25 11 473 645 508085437 508085621 9.660000e-22 115.0
36 TraesCS2D01G137300 chr3D 77.124 153 19 10 480 630 338300234 338300096 1.640000e-09 75.0
37 TraesCS2D01G137300 chr5B 84.718 301 36 8 3957 4250 227700904 227700607 4.160000e-75 292.0
38 TraesCS2D01G137300 chr5B 79.614 363 40 21 3619 3962 129716829 129716482 3.310000e-56 230.0
39 TraesCS2D01G137300 chr5B 93.750 128 8 0 1 128 492255546 492255419 4.340000e-45 193.0
40 TraesCS2D01G137300 chrUn 93.413 167 8 1 3264 3427 17379312 17379478 1.180000e-60 244.0
41 TraesCS2D01G137300 chr6A 93.939 132 8 0 1 132 30734738 30734869 2.590000e-47 200.0
42 TraesCS2D01G137300 chr6A 100.000 29 0 0 480 508 8697556 8697584 2.000000e-03 54.7
43 TraesCS2D01G137300 chr6B 93.182 132 9 0 1 132 14320372 14320241 1.210000e-45 195.0
44 TraesCS2D01G137300 chr1B 81.720 93 7 3 473 565 186525102 186525184 7.630000e-08 69.4
45 TraesCS2D01G137300 chr1B 90.698 43 3 1 1933 1975 122360299 122360340 5.940000e-04 56.5
46 TraesCS2D01G137300 chr4D 92.500 40 3 0 604 643 36581738 36581699 1.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G137300 chr2D 80818389 80822640 4251 True 7853.0 7853 100.000000 1 4252 1 chr2D.!!$R1 4251
1 TraesCS2D01G137300 chr2D 80780992 80784719 3727 True 2622.0 2623 95.012000 854 4252 2 chr2D.!!$R5 3398
2 TraesCS2D01G137300 chr2B 132516419 132519511 3092 False 1276.0 2547 93.285667 646 3265 3 chr2B.!!$F2 2619
3 TraesCS2D01G137300 chr2B 132560533 132563907 3374 True 416.0 416 92.230000 3264 3559 2 chr2B.!!$R2 295
4 TraesCS2D01G137300 chr7D 47453994 47456062 2068 False 457.5 634 83.304000 1089 3161 2 chr7D.!!$F1 2072
5 TraesCS2D01G137300 chr7A 49989930 49991265 1335 True 548.0 621 81.902500 1078 2749 2 chr7A.!!$R1 1671
6 TraesCS2D01G137300 chr4A 662200402 662201876 1474 True 376.5 481 79.582500 2034 3161 2 chr4A.!!$R2 1127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.029567 TTTACACCGCTTTGCCAACG 59.970 50.000 0.00 0.0 0.0 4.10 F
980 986 0.099791 CGAGACGAGAGAGCTTTCCC 59.900 60.000 0.00 0.0 0.0 3.97 F
983 989 0.244178 GACGAGAGAGCTTTCCCGTT 59.756 55.000 14.85 0.0 0.0 4.44 F
1039 1185 1.001068 TCGCGGTTTACAATCCAGACA 59.999 47.619 6.13 0.0 0.0 3.41 F
2135 2315 1.985662 CCCCTGCTACGTACCACCA 60.986 63.158 0.00 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1006 1012 0.608640 ACCGCGAATCCTCTGTTTCT 59.391 50.000 8.23 0.0 0.0 2.52 R
2196 2382 0.535102 AAAGTGGCGTGTGAAGAGGG 60.535 55.000 0.00 0.0 0.0 4.30 R
2582 2774 0.671472 TGCCTTGACTCATGCGACAG 60.671 55.000 0.00 0.0 0.0 3.51 R
2923 3458 1.337728 GGTTGGCCTTGCATTTGGTAC 60.338 52.381 3.32 0.0 0.0 3.34 R
3572 4403 0.106419 TTGTGGGGTTTGGGTGTCTC 60.106 55.000 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.258826 TGTCATGCATGGCAATAAATAAAATAC 57.741 29.630 30.82 13.36 43.62 1.89
27 28 9.480053 GTCATGCATGGCAATAAATAAAATACT 57.520 29.630 26.04 0.00 43.62 2.12
76 77 8.844865 ATGCATTAGGGAGATAGTATCATACA 57.155 34.615 12.66 0.00 0.00 2.29
77 78 8.298729 TGCATTAGGGAGATAGTATCATACAG 57.701 38.462 12.66 0.00 0.00 2.74
78 79 7.895962 TGCATTAGGGAGATAGTATCATACAGT 59.104 37.037 12.66 0.00 0.00 3.55
79 80 9.409918 GCATTAGGGAGATAGTATCATACAGTA 57.590 37.037 12.66 0.00 0.00 2.74
95 96 9.901172 ATCATACAGTAATATCACATGCATGAT 57.099 29.630 32.75 19.77 42.13 2.45
100 101 9.866798 ACAGTAATATCACATGCATGATACTAG 57.133 33.333 32.75 20.35 42.84 2.57
101 102 9.866798 CAGTAATATCACATGCATGATACTAGT 57.133 33.333 32.75 15.35 42.84 2.57
125 126 9.642343 AGTATATGATACTCTTCACTACAACCA 57.358 33.333 0.00 0.00 0.00 3.67
126 127 9.900710 GTATATGATACTCTTCACTACAACCAG 57.099 37.037 0.00 0.00 0.00 4.00
127 128 5.073311 TGATACTCTTCACTACAACCAGC 57.927 43.478 0.00 0.00 0.00 4.85
128 129 4.772624 TGATACTCTTCACTACAACCAGCT 59.227 41.667 0.00 0.00 0.00 4.24
129 130 5.246203 TGATACTCTTCACTACAACCAGCTT 59.754 40.000 0.00 0.00 0.00 3.74
130 131 4.423625 ACTCTTCACTACAACCAGCTTT 57.576 40.909 0.00 0.00 0.00 3.51
131 132 5.546621 ACTCTTCACTACAACCAGCTTTA 57.453 39.130 0.00 0.00 0.00 1.85
132 133 5.298347 ACTCTTCACTACAACCAGCTTTAC 58.702 41.667 0.00 0.00 0.00 2.01
133 134 5.163343 ACTCTTCACTACAACCAGCTTTACA 60.163 40.000 0.00 0.00 0.00 2.41
134 135 5.054477 TCTTCACTACAACCAGCTTTACAC 58.946 41.667 0.00 0.00 0.00 2.90
135 136 3.735591 TCACTACAACCAGCTTTACACC 58.264 45.455 0.00 0.00 0.00 4.16
136 137 2.478894 CACTACAACCAGCTTTACACCG 59.521 50.000 0.00 0.00 0.00 4.94
137 138 1.463444 CTACAACCAGCTTTACACCGC 59.537 52.381 0.00 0.00 0.00 5.68
138 139 0.179029 ACAACCAGCTTTACACCGCT 60.179 50.000 0.00 0.00 36.83 5.52
139 140 0.951558 CAACCAGCTTTACACCGCTT 59.048 50.000 0.00 0.00 33.45 4.68
140 141 1.336755 CAACCAGCTTTACACCGCTTT 59.663 47.619 0.00 0.00 33.45 3.51
141 142 0.951558 ACCAGCTTTACACCGCTTTG 59.048 50.000 0.00 0.00 33.45 2.77
142 143 0.387239 CCAGCTTTACACCGCTTTGC 60.387 55.000 0.00 0.00 33.45 3.68
143 144 0.387239 CAGCTTTACACCGCTTTGCC 60.387 55.000 0.00 0.00 33.45 4.52
144 145 0.821711 AGCTTTACACCGCTTTGCCA 60.822 50.000 0.00 0.00 31.17 4.92
145 146 0.031449 GCTTTACACCGCTTTGCCAA 59.969 50.000 0.00 0.00 0.00 4.52
146 147 1.766069 CTTTACACCGCTTTGCCAAC 58.234 50.000 0.00 0.00 0.00 3.77
147 148 0.029567 TTTACACCGCTTTGCCAACG 59.970 50.000 0.00 0.00 0.00 4.10
148 149 1.096386 TTACACCGCTTTGCCAACGT 61.096 50.000 0.00 0.00 0.00 3.99
149 150 1.777030 TACACCGCTTTGCCAACGTG 61.777 55.000 0.00 0.00 0.00 4.49
150 151 3.591835 ACCGCTTTGCCAACGTGG 61.592 61.111 11.57 11.57 41.55 4.94
151 152 4.341502 CCGCTTTGCCAACGTGGG 62.342 66.667 3.93 3.93 38.19 4.61
152 153 4.341502 CGCTTTGCCAACGTGGGG 62.342 66.667 11.96 6.63 38.19 4.96
153 154 3.223589 GCTTTGCCAACGTGGGGT 61.224 61.111 11.96 0.00 38.19 4.95
154 155 1.899534 GCTTTGCCAACGTGGGGTA 60.900 57.895 11.96 1.67 38.19 3.69
155 156 1.457009 GCTTTGCCAACGTGGGGTAA 61.457 55.000 11.96 8.53 38.19 2.85
156 157 0.596082 CTTTGCCAACGTGGGGTAAG 59.404 55.000 11.96 9.50 38.19 2.34
157 158 1.457009 TTTGCCAACGTGGGGTAAGC 61.457 55.000 11.96 0.00 38.19 3.09
158 159 3.060000 GCCAACGTGGGGTAAGCC 61.060 66.667 11.96 0.00 38.19 4.35
159 160 2.744709 CCAACGTGGGGTAAGCCG 60.745 66.667 0.00 0.00 32.67 5.52
160 161 2.344500 CAACGTGGGGTAAGCCGA 59.656 61.111 0.00 0.00 34.97 5.54
161 162 1.740296 CAACGTGGGGTAAGCCGAG 60.740 63.158 0.00 0.00 34.97 4.63
162 163 1.909781 AACGTGGGGTAAGCCGAGA 60.910 57.895 0.00 0.00 34.97 4.04
163 164 2.163601 AACGTGGGGTAAGCCGAGAC 62.164 60.000 0.00 0.00 34.97 3.36
164 165 2.183555 GTGGGGTAAGCCGAGACG 59.816 66.667 0.00 0.00 34.97 4.18
174 175 4.354155 CCGAGACGGCTTTGTTGA 57.646 55.556 0.00 0.00 41.17 3.18
175 176 1.860078 CCGAGACGGCTTTGTTGAC 59.140 57.895 0.00 0.00 41.17 3.18
176 177 1.566018 CCGAGACGGCTTTGTTGACC 61.566 60.000 0.00 0.00 41.17 4.02
177 178 0.878523 CGAGACGGCTTTGTTGACCA 60.879 55.000 0.00 0.00 0.00 4.02
178 179 1.305201 GAGACGGCTTTGTTGACCAA 58.695 50.000 0.00 0.00 0.00 3.67
179 180 1.673920 GAGACGGCTTTGTTGACCAAA 59.326 47.619 0.00 0.00 40.71 3.28
180 181 2.096248 AGACGGCTTTGTTGACCAAAA 58.904 42.857 0.00 0.00 42.31 2.44
181 182 2.494073 AGACGGCTTTGTTGACCAAAAA 59.506 40.909 0.00 0.00 42.31 1.94
182 183 3.132111 AGACGGCTTTGTTGACCAAAAAT 59.868 39.130 0.00 0.00 42.31 1.82
183 184 4.339814 AGACGGCTTTGTTGACCAAAAATA 59.660 37.500 0.00 0.00 42.31 1.40
184 185 5.012328 ACGGCTTTGTTGACCAAAAATAA 57.988 34.783 0.00 0.00 42.31 1.40
185 186 5.047188 ACGGCTTTGTTGACCAAAAATAAG 58.953 37.500 0.00 0.00 42.31 1.73
186 187 5.047188 CGGCTTTGTTGACCAAAAATAAGT 58.953 37.500 0.00 0.00 42.31 2.24
187 188 5.051106 CGGCTTTGTTGACCAAAAATAAGTG 60.051 40.000 0.00 0.00 42.31 3.16
188 189 6.045955 GGCTTTGTTGACCAAAAATAAGTGA 58.954 36.000 0.00 0.00 42.31 3.41
189 190 6.200854 GGCTTTGTTGACCAAAAATAAGTGAG 59.799 38.462 0.00 0.00 42.31 3.51
190 191 6.200854 GCTTTGTTGACCAAAAATAAGTGAGG 59.799 38.462 0.00 0.00 42.31 3.86
191 192 5.782893 TGTTGACCAAAAATAAGTGAGGG 57.217 39.130 0.00 0.00 0.00 4.30
192 193 4.038642 TGTTGACCAAAAATAAGTGAGGGC 59.961 41.667 0.00 0.00 0.00 5.19
193 194 4.112634 TGACCAAAAATAAGTGAGGGCT 57.887 40.909 0.00 0.00 0.00 5.19
194 195 4.079253 TGACCAAAAATAAGTGAGGGCTC 58.921 43.478 0.00 0.00 0.00 4.70
195 196 3.431415 ACCAAAAATAAGTGAGGGCTCC 58.569 45.455 0.00 0.00 0.00 4.70
196 197 2.760650 CCAAAAATAAGTGAGGGCTCCC 59.239 50.000 0.00 0.00 0.00 4.30
197 198 2.420058 AAAATAAGTGAGGGCTCCCG 57.580 50.000 0.00 0.00 41.95 5.14
198 199 0.107165 AAATAAGTGAGGGCTCCCGC 60.107 55.000 1.40 1.40 41.95 6.13
199 200 0.983378 AATAAGTGAGGGCTCCCGCT 60.983 55.000 10.03 2.61 41.95 5.52
200 201 0.105658 ATAAGTGAGGGCTCCCGCTA 60.106 55.000 10.03 0.00 41.95 4.26
201 202 1.041447 TAAGTGAGGGCTCCCGCTAC 61.041 60.000 10.03 6.68 41.95 3.58
202 203 2.760385 GTGAGGGCTCCCGCTACT 60.760 66.667 10.03 0.00 41.95 2.57
203 204 2.442272 TGAGGGCTCCCGCTACTC 60.442 66.667 10.03 0.00 41.95 2.59
204 205 2.123640 GAGGGCTCCCGCTACTCT 60.124 66.667 1.14 0.00 41.95 3.24
205 206 1.758906 GAGGGCTCCCGCTACTCTT 60.759 63.158 1.14 0.00 41.95 2.85
206 207 1.740332 GAGGGCTCCCGCTACTCTTC 61.740 65.000 1.14 0.00 41.95 2.87
207 208 1.758906 GGGCTCCCGCTACTCTTCT 60.759 63.158 0.00 0.00 36.09 2.85
208 209 1.737201 GGCTCCCGCTACTCTTCTC 59.263 63.158 0.00 0.00 36.09 2.87
209 210 1.357334 GCTCCCGCTACTCTTCTCG 59.643 63.158 0.00 0.00 0.00 4.04
210 211 1.357334 CTCCCGCTACTCTTCTCGC 59.643 63.158 0.00 0.00 0.00 5.03
211 212 2.024871 CCCGCTACTCTTCTCGCG 59.975 66.667 0.00 0.00 44.69 5.87
216 217 2.031037 GCTACTCTTCTCGCGATCTG 57.969 55.000 10.36 0.00 0.00 2.90
217 218 1.334599 GCTACTCTTCTCGCGATCTGG 60.335 57.143 10.36 0.00 0.00 3.86
218 219 0.663688 TACTCTTCTCGCGATCTGGC 59.336 55.000 10.36 0.00 0.00 4.85
219 220 1.299773 CTCTTCTCGCGATCTGGCC 60.300 63.158 10.36 0.00 0.00 5.36
220 221 2.009424 CTCTTCTCGCGATCTGGCCA 62.009 60.000 10.36 4.71 0.00 5.36
221 222 1.880340 CTTCTCGCGATCTGGCCAC 60.880 63.158 10.36 0.00 0.00 5.01
222 223 3.371097 TTCTCGCGATCTGGCCACC 62.371 63.158 10.36 0.00 0.00 4.61
223 224 3.842923 CTCGCGATCTGGCCACCT 61.843 66.667 10.36 0.00 0.00 4.00
224 225 3.781770 CTCGCGATCTGGCCACCTC 62.782 68.421 10.36 0.00 0.00 3.85
242 243 4.884257 GCCGCCTGCATTGCCATG 62.884 66.667 6.12 0.00 40.77 3.66
243 244 3.142162 CCGCCTGCATTGCCATGA 61.142 61.111 6.12 0.00 31.07 3.07
244 245 2.103538 CGCCTGCATTGCCATGAC 59.896 61.111 6.12 0.00 31.07 3.06
245 246 2.702788 CGCCTGCATTGCCATGACA 61.703 57.895 6.12 0.00 31.07 3.58
246 247 1.592743 GCCTGCATTGCCATGACAA 59.407 52.632 6.12 0.00 31.07 3.18
247 248 0.738412 GCCTGCATTGCCATGACAAC 60.738 55.000 6.12 0.00 31.07 3.32
248 249 0.108520 CCTGCATTGCCATGACAACC 60.109 55.000 6.12 0.00 31.07 3.77
249 250 0.892755 CTGCATTGCCATGACAACCT 59.107 50.000 6.12 0.00 31.07 3.50
250 251 0.889994 TGCATTGCCATGACAACCTC 59.110 50.000 6.12 0.00 31.07 3.85
251 252 0.174162 GCATTGCCATGACAACCTCC 59.826 55.000 1.13 0.00 31.07 4.30
252 253 0.819582 CATTGCCATGACAACCTCCC 59.180 55.000 0.00 0.00 31.07 4.30
253 254 0.324645 ATTGCCATGACAACCTCCCC 60.325 55.000 0.00 0.00 31.03 4.81
254 255 2.043953 GCCATGACAACCTCCCCC 60.044 66.667 0.00 0.00 0.00 5.40
255 256 2.272146 CCATGACAACCTCCCCCG 59.728 66.667 0.00 0.00 0.00 5.73
256 257 2.602676 CCATGACAACCTCCCCCGT 61.603 63.158 0.00 0.00 0.00 5.28
257 258 1.078426 CATGACAACCTCCCCCGTC 60.078 63.158 0.00 0.00 0.00 4.79
258 259 2.298661 ATGACAACCTCCCCCGTCC 61.299 63.158 0.00 0.00 0.00 4.79
259 260 2.926242 GACAACCTCCCCCGTCCA 60.926 66.667 0.00 0.00 0.00 4.02
260 261 3.246880 ACAACCTCCCCCGTCCAC 61.247 66.667 0.00 0.00 0.00 4.02
261 262 4.029809 CAACCTCCCCCGTCCACC 62.030 72.222 0.00 0.00 0.00 4.61
268 269 4.016706 CCCCGTCCACCCACACTC 62.017 72.222 0.00 0.00 0.00 3.51
269 270 3.238497 CCCGTCCACCCACACTCA 61.238 66.667 0.00 0.00 0.00 3.41
270 271 2.343758 CCGTCCACCCACACTCAG 59.656 66.667 0.00 0.00 0.00 3.35
271 272 2.357517 CGTCCACCCACACTCAGC 60.358 66.667 0.00 0.00 0.00 4.26
272 273 2.032681 GTCCACCCACACTCAGCC 59.967 66.667 0.00 0.00 0.00 4.85
273 274 3.625897 TCCACCCACACTCAGCCG 61.626 66.667 0.00 0.00 0.00 5.52
275 276 4.624364 CACCCACACTCAGCCGCA 62.624 66.667 0.00 0.00 0.00 5.69
276 277 4.320456 ACCCACACTCAGCCGCAG 62.320 66.667 0.00 0.00 0.00 5.18
311 312 4.815973 TAGCCCCCGCCACCTGAT 62.816 66.667 0.00 0.00 34.57 2.90
312 313 3.398365 TAGCCCCCGCCACCTGATA 62.398 63.158 0.00 0.00 34.57 2.15
313 314 2.689573 TAGCCCCCGCCACCTGATAT 62.690 60.000 0.00 0.00 34.57 1.63
314 315 2.431683 CCCCCGCCACCTGATATG 59.568 66.667 0.00 0.00 0.00 1.78
315 316 2.431683 CCCCGCCACCTGATATGG 59.568 66.667 0.00 0.00 40.50 2.74
316 317 2.146724 CCCCGCCACCTGATATGGA 61.147 63.158 0.00 0.00 39.87 3.41
317 318 1.071471 CCCGCCACCTGATATGGAC 59.929 63.158 0.00 0.00 39.87 4.02
318 319 1.410850 CCCGCCACCTGATATGGACT 61.411 60.000 0.00 0.00 39.87 3.85
319 320 0.469917 CCGCCACCTGATATGGACTT 59.530 55.000 0.00 0.00 39.87 3.01
320 321 1.541233 CCGCCACCTGATATGGACTTC 60.541 57.143 0.00 0.00 39.87 3.01
321 322 1.541233 CGCCACCTGATATGGACTTCC 60.541 57.143 0.00 0.00 39.87 3.46
322 323 1.541233 GCCACCTGATATGGACTTCCG 60.541 57.143 0.00 0.00 39.87 4.30
323 324 1.541233 CCACCTGATATGGACTTCCGC 60.541 57.143 0.00 0.00 39.87 5.54
324 325 1.414181 CACCTGATATGGACTTCCGCT 59.586 52.381 0.00 0.00 39.43 5.52
325 326 1.689273 ACCTGATATGGACTTCCGCTC 59.311 52.381 0.00 0.00 39.43 5.03
326 327 1.001406 CCTGATATGGACTTCCGCTCC 59.999 57.143 0.00 0.00 39.43 4.70
327 328 1.967066 CTGATATGGACTTCCGCTCCT 59.033 52.381 0.00 0.00 39.43 3.69
328 329 2.366916 CTGATATGGACTTCCGCTCCTT 59.633 50.000 0.00 0.00 39.43 3.36
329 330 2.103094 TGATATGGACTTCCGCTCCTTG 59.897 50.000 0.00 0.00 39.43 3.61
330 331 1.568504 TATGGACTTCCGCTCCTTGT 58.431 50.000 0.00 0.00 39.43 3.16
331 332 0.693049 ATGGACTTCCGCTCCTTGTT 59.307 50.000 0.00 0.00 39.43 2.83
332 333 0.250295 TGGACTTCCGCTCCTTGTTG 60.250 55.000 0.00 0.00 39.43 3.33
333 334 0.955919 GGACTTCCGCTCCTTGTTGG 60.956 60.000 0.00 0.00 37.10 3.77
334 335 1.578206 GACTTCCGCTCCTTGTTGGC 61.578 60.000 0.00 0.00 35.26 4.52
339 340 3.056328 GCTCCTTGTTGGCGACCC 61.056 66.667 1.61 0.00 35.26 4.46
340 341 2.750350 CTCCTTGTTGGCGACCCT 59.250 61.111 1.61 0.00 35.26 4.34
341 342 1.672356 CTCCTTGTTGGCGACCCTG 60.672 63.158 1.61 0.00 35.26 4.45
342 343 2.111999 CTCCTTGTTGGCGACCCTGA 62.112 60.000 1.61 0.00 35.26 3.86
343 344 1.002134 CCTTGTTGGCGACCCTGAT 60.002 57.895 1.61 0.00 0.00 2.90
344 345 1.308069 CCTTGTTGGCGACCCTGATG 61.308 60.000 1.61 0.00 0.00 3.07
345 346 1.926511 CTTGTTGGCGACCCTGATGC 61.927 60.000 1.61 0.00 0.00 3.91
346 347 2.045926 GTTGGCGACCCTGATGCT 60.046 61.111 0.00 0.00 0.00 3.79
347 348 1.675641 GTTGGCGACCCTGATGCTT 60.676 57.895 0.00 0.00 0.00 3.91
348 349 1.377202 TTGGCGACCCTGATGCTTC 60.377 57.895 0.00 0.00 0.00 3.86
349 350 1.841302 TTGGCGACCCTGATGCTTCT 61.841 55.000 0.88 0.00 0.00 2.85
350 351 1.522580 GGCGACCCTGATGCTTCTC 60.523 63.158 0.88 0.00 0.00 2.87
351 352 1.522580 GCGACCCTGATGCTTCTCC 60.523 63.158 0.88 0.00 0.00 3.71
352 353 1.227089 CGACCCTGATGCTTCTCCG 60.227 63.158 0.88 0.00 0.00 4.63
353 354 1.667154 CGACCCTGATGCTTCTCCGA 61.667 60.000 0.88 0.00 0.00 4.55
354 355 0.179097 GACCCTGATGCTTCTCCGAC 60.179 60.000 0.88 0.00 0.00 4.79
355 356 0.616111 ACCCTGATGCTTCTCCGACT 60.616 55.000 0.88 0.00 0.00 4.18
356 357 0.539051 CCCTGATGCTTCTCCGACTT 59.461 55.000 0.88 0.00 0.00 3.01
357 358 1.472376 CCCTGATGCTTCTCCGACTTC 60.472 57.143 0.88 0.00 0.00 3.01
358 359 1.205655 CCTGATGCTTCTCCGACTTCA 59.794 52.381 0.88 0.00 0.00 3.02
359 360 2.354103 CCTGATGCTTCTCCGACTTCAA 60.354 50.000 0.88 0.00 0.00 2.69
360 361 3.329386 CTGATGCTTCTCCGACTTCAAA 58.671 45.455 0.88 0.00 0.00 2.69
361 362 3.329386 TGATGCTTCTCCGACTTCAAAG 58.671 45.455 0.88 0.00 0.00 2.77
362 363 1.512926 TGCTTCTCCGACTTCAAAGC 58.487 50.000 0.00 0.00 42.02 3.51
363 364 1.512926 GCTTCTCCGACTTCAAAGCA 58.487 50.000 0.00 0.00 41.46 3.91
364 365 1.462670 GCTTCTCCGACTTCAAAGCAG 59.537 52.381 0.00 0.00 41.46 4.24
365 366 2.072298 CTTCTCCGACTTCAAAGCAGG 58.928 52.381 0.00 0.00 0.00 4.85
366 367 1.338107 TCTCCGACTTCAAAGCAGGA 58.662 50.000 6.62 6.62 34.89 3.86
367 368 1.691976 TCTCCGACTTCAAAGCAGGAA 59.308 47.619 7.79 0.00 35.44 3.36
368 369 2.104111 TCTCCGACTTCAAAGCAGGAAA 59.896 45.455 7.79 0.00 35.44 3.13
369 370 2.878406 CTCCGACTTCAAAGCAGGAAAA 59.122 45.455 7.79 0.00 35.44 2.29
370 371 3.283751 TCCGACTTCAAAGCAGGAAAAA 58.716 40.909 4.83 0.00 33.72 1.94
394 395 9.829507 AAAAACACATGGAGATCAACATTTAAA 57.170 25.926 0.00 0.00 0.00 1.52
395 396 9.480053 AAAACACATGGAGATCAACATTTAAAG 57.520 29.630 0.00 0.00 0.00 1.85
396 397 7.161773 ACACATGGAGATCAACATTTAAAGG 57.838 36.000 0.00 0.00 0.00 3.11
397 398 6.947733 ACACATGGAGATCAACATTTAAAGGA 59.052 34.615 6.90 0.00 0.00 3.36
398 399 7.451255 ACACATGGAGATCAACATTTAAAGGAA 59.549 33.333 6.90 0.00 0.00 3.36
399 400 8.306038 CACATGGAGATCAACATTTAAAGGAAA 58.694 33.333 6.90 0.00 0.00 3.13
400 401 9.039165 ACATGGAGATCAACATTTAAAGGAAAT 57.961 29.630 6.90 0.00 38.34 2.17
401 402 9.880157 CATGGAGATCAACATTTAAAGGAAATT 57.120 29.630 6.90 0.00 35.45 1.82
403 404 8.531146 TGGAGATCAACATTTAAAGGAAATTCC 58.469 33.333 6.90 3.29 35.45 3.01
404 405 8.531146 GGAGATCAACATTTAAAGGAAATTCCA 58.469 33.333 15.21 0.00 39.61 3.53
406 407 9.880157 AGATCAACATTTAAAGGAAATTCCATG 57.120 29.630 15.21 10.77 39.61 3.66
407 408 9.101655 GATCAACATTTAAAGGAAATTCCATGG 57.898 33.333 15.21 4.97 39.61 3.66
408 409 8.200024 TCAACATTTAAAGGAAATTCCATGGA 57.800 30.769 11.44 11.44 39.61 3.41
409 410 8.654997 TCAACATTTAAAGGAAATTCCATGGAA 58.345 29.630 28.92 28.92 39.61 3.53
410 411 9.282569 CAACATTTAAAGGAAATTCCATGGAAA 57.717 29.630 30.28 14.46 39.61 3.13
411 412 8.846943 ACATTTAAAGGAAATTCCATGGAAAC 57.153 30.769 30.28 22.05 39.61 2.78
412 413 7.882791 ACATTTAAAGGAAATTCCATGGAAACC 59.117 33.333 30.28 28.31 39.61 3.27
413 414 4.535526 AAAGGAAATTCCATGGAAACCG 57.464 40.909 30.28 0.00 39.61 4.44
414 415 1.824852 AGGAAATTCCATGGAAACCGC 59.175 47.619 30.28 18.60 39.61 5.68
415 416 1.548269 GGAAATTCCATGGAAACCGCA 59.452 47.619 30.28 7.72 37.69 5.69
416 417 2.168313 GGAAATTCCATGGAAACCGCAT 59.832 45.455 30.28 10.74 37.69 4.73
417 418 3.369366 GGAAATTCCATGGAAACCGCATT 60.369 43.478 30.28 16.20 37.69 3.56
418 419 3.979101 AATTCCATGGAAACCGCATTT 57.021 38.095 30.28 15.48 37.69 2.32
419 420 3.979101 ATTCCATGGAAACCGCATTTT 57.021 38.095 30.28 8.43 37.69 1.82
420 421 5.413309 AATTCCATGGAAACCGCATTTTA 57.587 34.783 30.28 3.89 37.69 1.52
421 422 4.873746 TTCCATGGAAACCGCATTTTAA 57.126 36.364 25.13 0.00 0.00 1.52
422 423 4.873746 TCCATGGAAACCGCATTTTAAA 57.126 36.364 13.46 0.00 0.00 1.52
423 424 4.815269 TCCATGGAAACCGCATTTTAAAG 58.185 39.130 13.46 0.00 0.00 1.85
424 425 4.282195 TCCATGGAAACCGCATTTTAAAGT 59.718 37.500 13.46 0.00 0.00 2.66
425 426 4.994217 CCATGGAAACCGCATTTTAAAGTT 59.006 37.500 5.56 0.00 0.00 2.66
426 427 5.468409 CCATGGAAACCGCATTTTAAAGTTT 59.532 36.000 5.56 3.05 33.55 2.66
427 428 6.647067 CCATGGAAACCGCATTTTAAAGTTTA 59.353 34.615 5.56 0.00 31.14 2.01
428 429 7.148656 CCATGGAAACCGCATTTTAAAGTTTAG 60.149 37.037 5.56 0.00 31.14 1.85
429 430 7.040473 TGGAAACCGCATTTTAAAGTTTAGA 57.960 32.000 3.34 0.00 31.14 2.10
430 431 7.490000 TGGAAACCGCATTTTAAAGTTTAGAA 58.510 30.769 1.45 1.45 31.14 2.10
431 432 7.980099 TGGAAACCGCATTTTAAAGTTTAGAAA 59.020 29.630 3.00 4.66 31.14 2.52
432 433 8.819015 GGAAACCGCATTTTAAAGTTTAGAAAA 58.181 29.630 3.00 1.46 31.14 2.29
464 465 5.966742 AAAAACTAAGGGATGTTGAGAGC 57.033 39.130 0.00 0.00 0.00 4.09
465 466 2.969628 ACTAAGGGATGTTGAGAGCG 57.030 50.000 0.00 0.00 0.00 5.03
466 467 2.180276 ACTAAGGGATGTTGAGAGCGT 58.820 47.619 0.00 0.00 0.00 5.07
467 468 2.567615 ACTAAGGGATGTTGAGAGCGTT 59.432 45.455 0.00 0.00 0.00 4.84
468 469 3.767673 ACTAAGGGATGTTGAGAGCGTTA 59.232 43.478 0.00 0.00 0.00 3.18
469 470 3.914426 AAGGGATGTTGAGAGCGTTAT 57.086 42.857 0.00 0.00 0.00 1.89
470 471 3.185246 AGGGATGTTGAGAGCGTTATG 57.815 47.619 0.00 0.00 0.00 1.90
471 472 2.766263 AGGGATGTTGAGAGCGTTATGA 59.234 45.455 0.00 0.00 0.00 2.15
472 473 3.197766 AGGGATGTTGAGAGCGTTATGAA 59.802 43.478 0.00 0.00 0.00 2.57
473 474 3.938963 GGGATGTTGAGAGCGTTATGAAA 59.061 43.478 0.00 0.00 0.00 2.69
474 475 4.034510 GGGATGTTGAGAGCGTTATGAAAG 59.965 45.833 0.00 0.00 0.00 2.62
475 476 4.494855 GGATGTTGAGAGCGTTATGAAAGC 60.495 45.833 0.00 0.00 0.00 3.51
476 477 2.411748 TGTTGAGAGCGTTATGAAAGCG 59.588 45.455 0.00 0.00 35.78 4.68
477 478 1.640428 TGAGAGCGTTATGAAAGCGG 58.360 50.000 0.00 0.00 35.78 5.52
478 479 0.931005 GAGAGCGTTATGAAAGCGGG 59.069 55.000 0.00 0.00 35.78 6.13
479 480 0.535335 AGAGCGTTATGAAAGCGGGA 59.465 50.000 0.00 0.00 35.78 5.14
480 481 1.139058 AGAGCGTTATGAAAGCGGGAT 59.861 47.619 0.00 0.00 35.78 3.85
481 482 1.940613 GAGCGTTATGAAAGCGGGATT 59.059 47.619 0.00 0.00 35.78 3.01
482 483 1.670811 AGCGTTATGAAAGCGGGATTG 59.329 47.619 0.00 0.00 35.78 2.67
483 484 1.859998 GCGTTATGAAAGCGGGATTGC 60.860 52.381 0.00 0.00 0.00 3.56
485 486 2.869801 CGTTATGAAAGCGGGATTGCTA 59.130 45.455 0.00 0.00 46.60 3.49
486 487 3.311322 CGTTATGAAAGCGGGATTGCTAA 59.689 43.478 0.00 0.00 46.60 3.09
487 488 4.201871 CGTTATGAAAGCGGGATTGCTAAA 60.202 41.667 0.00 0.00 46.60 1.85
488 489 5.505654 CGTTATGAAAGCGGGATTGCTAAAT 60.506 40.000 0.00 0.00 46.60 1.40
489 490 4.574599 ATGAAAGCGGGATTGCTAAATC 57.425 40.909 0.00 0.00 46.60 2.17
490 491 3.620488 TGAAAGCGGGATTGCTAAATCT 58.380 40.909 0.00 0.00 46.60 2.40
491 492 4.016444 TGAAAGCGGGATTGCTAAATCTT 58.984 39.130 0.00 0.00 46.60 2.40
492 493 5.189928 TGAAAGCGGGATTGCTAAATCTTA 58.810 37.500 0.00 0.00 46.60 2.10
493 494 5.296780 TGAAAGCGGGATTGCTAAATCTTAG 59.703 40.000 0.00 0.00 46.60 2.18
494 495 4.423625 AGCGGGATTGCTAAATCTTAGT 57.576 40.909 0.00 0.00 45.14 2.24
495 496 4.381411 AGCGGGATTGCTAAATCTTAGTC 58.619 43.478 0.00 0.00 45.14 2.59
496 497 3.184581 GCGGGATTGCTAAATCTTAGTCG 59.815 47.826 0.00 0.00 41.74 4.18
497 498 4.617959 CGGGATTGCTAAATCTTAGTCGA 58.382 43.478 0.00 0.00 41.74 4.20
498 499 4.444720 CGGGATTGCTAAATCTTAGTCGAC 59.555 45.833 7.70 7.70 41.74 4.20
499 500 5.602628 GGGATTGCTAAATCTTAGTCGACT 58.397 41.667 23.66 23.66 41.74 4.18
500 501 5.463724 GGGATTGCTAAATCTTAGTCGACTG 59.536 44.000 28.12 12.46 41.74 3.51
501 502 6.273825 GGATTGCTAAATCTTAGTCGACTGA 58.726 40.000 28.12 19.13 41.74 3.41
502 503 6.419413 GGATTGCTAAATCTTAGTCGACTGAG 59.581 42.308 26.80 26.80 41.74 3.35
503 504 6.510879 TTGCTAAATCTTAGTCGACTGAGA 57.489 37.500 33.88 33.88 41.83 3.27
504 505 5.881447 TGCTAAATCTTAGTCGACTGAGAC 58.119 41.667 34.32 23.69 40.68 3.36
520 521 3.562567 GAGACTTACTCAGTTGACGCT 57.437 47.619 0.00 0.00 44.36 5.07
521 522 4.681835 GAGACTTACTCAGTTGACGCTA 57.318 45.455 0.00 0.00 44.36 4.26
522 523 5.238006 GAGACTTACTCAGTTGACGCTAT 57.762 43.478 0.00 0.00 44.36 2.97
523 524 6.360844 GAGACTTACTCAGTTGACGCTATA 57.639 41.667 0.00 0.00 44.36 1.31
524 525 6.945938 AGACTTACTCAGTTGACGCTATAT 57.054 37.500 0.00 0.00 35.01 0.86
525 526 7.336161 AGACTTACTCAGTTGACGCTATATT 57.664 36.000 0.00 0.00 35.01 1.28
526 527 7.419204 AGACTTACTCAGTTGACGCTATATTC 58.581 38.462 0.00 0.00 35.01 1.75
527 528 7.067129 AGACTTACTCAGTTGACGCTATATTCA 59.933 37.037 0.00 0.00 35.01 2.57
528 529 7.717568 ACTTACTCAGTTGACGCTATATTCAT 58.282 34.615 0.00 0.00 27.32 2.57
529 530 8.198109 ACTTACTCAGTTGACGCTATATTCATT 58.802 33.333 0.00 0.00 27.32 2.57
530 531 6.834959 ACTCAGTTGACGCTATATTCATTG 57.165 37.500 0.00 0.00 0.00 2.82
531 532 5.755375 ACTCAGTTGACGCTATATTCATTGG 59.245 40.000 0.00 0.00 0.00 3.16
532 533 5.912892 TCAGTTGACGCTATATTCATTGGA 58.087 37.500 0.00 0.00 0.00 3.53
533 534 6.524734 TCAGTTGACGCTATATTCATTGGAT 58.475 36.000 0.00 0.00 0.00 3.41
534 535 6.646653 TCAGTTGACGCTATATTCATTGGATC 59.353 38.462 0.00 0.00 0.00 3.36
535 536 6.648310 CAGTTGACGCTATATTCATTGGATCT 59.352 38.462 0.00 0.00 0.00 2.75
536 537 7.172190 CAGTTGACGCTATATTCATTGGATCTT 59.828 37.037 0.00 0.00 0.00 2.40
537 538 8.367911 AGTTGACGCTATATTCATTGGATCTTA 58.632 33.333 0.00 0.00 0.00 2.10
538 539 8.436200 GTTGACGCTATATTCATTGGATCTTAC 58.564 37.037 0.00 0.00 0.00 2.34
539 540 7.666623 TGACGCTATATTCATTGGATCTTACA 58.333 34.615 0.00 0.00 0.00 2.41
540 541 7.598869 TGACGCTATATTCATTGGATCTTACAC 59.401 37.037 0.00 0.00 0.00 2.90
541 542 6.586463 ACGCTATATTCATTGGATCTTACACG 59.414 38.462 0.00 0.00 0.00 4.49
542 543 6.035005 CGCTATATTCATTGGATCTTACACGG 59.965 42.308 0.00 0.00 0.00 4.94
543 544 7.097192 GCTATATTCATTGGATCTTACACGGA 58.903 38.462 0.00 0.00 0.00 4.69
544 545 7.276658 GCTATATTCATTGGATCTTACACGGAG 59.723 40.741 0.00 0.00 0.00 4.63
545 546 5.614324 ATTCATTGGATCTTACACGGAGA 57.386 39.130 0.00 0.00 0.00 3.71
546 547 5.614324 TTCATTGGATCTTACACGGAGAT 57.386 39.130 0.00 0.00 36.60 2.75
547 548 5.201713 TCATTGGATCTTACACGGAGATC 57.798 43.478 5.72 5.72 45.61 2.75
562 563 4.877323 GGAGATCCGCGTAAAATTTTCT 57.123 40.909 6.72 0.00 0.00 2.52
563 564 5.231265 GGAGATCCGCGTAAAATTTTCTT 57.769 39.130 6.72 0.00 0.00 2.52
564 565 5.637809 GGAGATCCGCGTAAAATTTTCTTT 58.362 37.500 6.72 0.00 0.00 2.52
565 566 5.737757 GGAGATCCGCGTAAAATTTTCTTTC 59.262 40.000 6.72 0.00 0.00 2.62
566 567 6.403309 GGAGATCCGCGTAAAATTTTCTTTCT 60.403 38.462 6.72 2.08 0.00 2.52
567 568 7.201582 GGAGATCCGCGTAAAATTTTCTTTCTA 60.202 37.037 6.72 0.00 0.00 2.10
568 569 7.685594 AGATCCGCGTAAAATTTTCTTTCTAG 58.314 34.615 6.72 0.00 0.00 2.43
569 570 6.790285 TCCGCGTAAAATTTTCTTTCTAGT 57.210 33.333 6.72 0.00 0.00 2.57
570 571 7.193377 TCCGCGTAAAATTTTCTTTCTAGTT 57.807 32.000 6.72 0.00 0.00 2.24
571 572 7.641760 TCCGCGTAAAATTTTCTTTCTAGTTT 58.358 30.769 6.72 0.00 0.00 2.66
572 573 8.130469 TCCGCGTAAAATTTTCTTTCTAGTTTT 58.870 29.630 6.72 0.00 0.00 2.43
573 574 8.748582 CCGCGTAAAATTTTCTTTCTAGTTTTT 58.251 29.630 6.72 0.00 0.00 1.94
595 596 6.611613 TTTTTCCCATACATGTTATGCCAA 57.388 33.333 2.30 0.00 0.00 4.52
596 597 6.805016 TTTTCCCATACATGTTATGCCAAT 57.195 33.333 2.30 0.00 0.00 3.16
597 598 6.805016 TTTCCCATACATGTTATGCCAATT 57.195 33.333 2.30 0.00 0.00 2.32
598 599 5.787953 TCCCATACATGTTATGCCAATTG 57.212 39.130 2.30 0.00 0.00 2.32
599 600 5.453158 TCCCATACATGTTATGCCAATTGA 58.547 37.500 2.30 0.00 0.00 2.57
600 601 5.301551 TCCCATACATGTTATGCCAATTGAC 59.698 40.000 2.30 0.00 0.00 3.18
601 602 5.302568 CCCATACATGTTATGCCAATTGACT 59.697 40.000 2.30 0.00 0.00 3.41
602 603 6.183360 CCCATACATGTTATGCCAATTGACTT 60.183 38.462 2.30 0.00 0.00 3.01
603 604 7.014134 CCCATACATGTTATGCCAATTGACTTA 59.986 37.037 2.30 0.00 0.00 2.24
604 605 8.077991 CCATACATGTTATGCCAATTGACTTAG 58.922 37.037 2.30 0.00 0.00 2.18
605 606 8.839343 CATACATGTTATGCCAATTGACTTAGA 58.161 33.333 2.30 0.00 0.00 2.10
606 607 7.088589 ACATGTTATGCCAATTGACTTAGAC 57.911 36.000 7.12 0.00 0.00 2.59
607 608 6.886459 ACATGTTATGCCAATTGACTTAGACT 59.114 34.615 7.12 0.00 0.00 3.24
608 609 7.394359 ACATGTTATGCCAATTGACTTAGACTT 59.606 33.333 7.12 0.00 0.00 3.01
609 610 8.892723 CATGTTATGCCAATTGACTTAGACTTA 58.107 33.333 7.12 0.00 0.00 2.24
610 611 8.492673 TGTTATGCCAATTGACTTAGACTTAG 57.507 34.615 7.12 0.00 0.00 2.18
611 612 8.100791 TGTTATGCCAATTGACTTAGACTTAGT 58.899 33.333 7.12 0.00 0.00 2.24
612 613 8.947115 GTTATGCCAATTGACTTAGACTTAGTT 58.053 33.333 7.12 0.00 0.00 2.24
615 616 8.547967 TGCCAATTGACTTAGACTTAGTTAAG 57.452 34.615 7.12 10.50 39.18 1.85
628 629 6.334102 ACTTAGTTAAGTCTCAGTCCACTG 57.666 41.667 0.00 0.00 42.52 3.66
629 630 6.069331 ACTTAGTTAAGTCTCAGTCCACTGA 58.931 40.000 9.09 9.09 45.04 3.41
638 639 0.820871 CAGTCCACTGAGACCTAGCC 59.179 60.000 0.00 0.00 46.59 3.93
639 640 0.409876 AGTCCACTGAGACCTAGCCA 59.590 55.000 0.00 0.00 37.49 4.75
640 641 0.533032 GTCCACTGAGACCTAGCCAC 59.467 60.000 0.00 0.00 0.00 5.01
641 642 0.114364 TCCACTGAGACCTAGCCACA 59.886 55.000 0.00 0.00 0.00 4.17
642 643 0.247736 CCACTGAGACCTAGCCACAC 59.752 60.000 0.00 0.00 0.00 3.82
643 644 0.247736 CACTGAGACCTAGCCACACC 59.752 60.000 0.00 0.00 0.00 4.16
644 645 0.905337 ACTGAGACCTAGCCACACCC 60.905 60.000 0.00 0.00 0.00 4.61
648 649 1.481363 GAGACCTAGCCACACCCTTAC 59.519 57.143 0.00 0.00 0.00 2.34
650 651 0.543646 ACCTAGCCACACCCTTACGT 60.544 55.000 0.00 0.00 0.00 3.57
669 670 2.978489 CGTAAGTCACTTTGAGACGTCC 59.022 50.000 13.01 4.42 40.84 4.79
672 673 1.267261 AGTCACTTTGAGACGTCCTCG 59.733 52.381 13.01 0.00 44.92 4.63
695 696 5.018539 AGTGCTAAGTCAAGTACACAACA 57.981 39.130 0.00 0.00 34.85 3.33
851 852 1.433064 CAACGGCCAAATCCATCCG 59.567 57.895 2.24 0.00 46.61 4.18
966 972 2.362800 GCGTTCACACCGACGAGAC 61.363 63.158 0.00 0.00 41.53 3.36
980 986 0.099791 CGAGACGAGAGAGCTTTCCC 59.900 60.000 0.00 0.00 0.00 3.97
981 987 0.099791 GAGACGAGAGAGCTTTCCCG 59.900 60.000 6.63 6.63 0.00 5.14
983 989 0.244178 GACGAGAGAGCTTTCCCGTT 59.756 55.000 14.85 0.00 0.00 4.44
985 991 1.891150 ACGAGAGAGCTTTCCCGTTAA 59.109 47.619 8.04 0.00 0.00 2.01
986 992 2.496470 ACGAGAGAGCTTTCCCGTTAAT 59.504 45.455 8.04 0.00 0.00 1.40
987 993 3.698040 ACGAGAGAGCTTTCCCGTTAATA 59.302 43.478 8.04 0.00 0.00 0.98
988 994 4.202030 ACGAGAGAGCTTTCCCGTTAATAG 60.202 45.833 8.04 0.00 0.00 1.73
999 1005 3.127548 TCCCGTTAATAGTCACGTCACTC 59.872 47.826 0.00 0.00 34.47 3.51
1006 1012 1.399714 AGTCACGTCACTCCAAGACA 58.600 50.000 0.00 0.00 35.77 3.41
1007 1013 1.338337 AGTCACGTCACTCCAAGACAG 59.662 52.381 0.00 0.00 35.77 3.51
1009 1015 2.028876 TCACGTCACTCCAAGACAGAA 58.971 47.619 0.00 0.00 35.77 3.02
1010 1016 2.429250 TCACGTCACTCCAAGACAGAAA 59.571 45.455 0.00 0.00 35.77 2.52
1011 1017 2.540101 CACGTCACTCCAAGACAGAAAC 59.460 50.000 0.00 0.00 35.77 2.78
1012 1018 2.167693 ACGTCACTCCAAGACAGAAACA 59.832 45.455 0.00 0.00 35.77 2.83
1013 1019 2.797156 CGTCACTCCAAGACAGAAACAG 59.203 50.000 0.00 0.00 35.77 3.16
1039 1185 1.001068 TCGCGGTTTACAATCCAGACA 59.999 47.619 6.13 0.00 0.00 3.41
1055 1201 3.679980 CCAGACACGAACCAATCAAGTAG 59.320 47.826 0.00 0.00 0.00 2.57
1057 1203 5.466819 CAGACACGAACCAATCAAGTAGTA 58.533 41.667 0.00 0.00 0.00 1.82
1490 1661 2.766400 AACGCCACCAACAACACCG 61.766 57.895 0.00 0.00 0.00 4.94
1517 1688 3.499737 CCCACATCTTCGCCGTGC 61.500 66.667 0.00 0.00 0.00 5.34
1792 1971 7.961325 AATGGTTTAGGTACTTGCAAAATTG 57.039 32.000 0.00 0.00 41.75 2.32
1798 1977 4.159557 AGGTACTTGCAAAATTGGATGGT 58.840 39.130 0.00 0.00 27.25 3.55
1918 2097 2.836479 TCGAATGTGCAATGCATCTG 57.164 45.000 12.38 1.95 41.91 2.90
1947 2127 3.057019 TCTGATCACAGTACAAACGCAC 58.943 45.455 0.00 0.00 43.81 5.34
2017 2197 5.048013 CACAGACGCATATCTACCTGGATTA 60.048 44.000 0.00 0.00 0.00 1.75
2135 2315 1.985662 CCCCTGCTACGTACCACCA 60.986 63.158 0.00 0.00 0.00 4.17
2397 2583 4.098044 TGTTTACATTTTGGTTCGAAGGCA 59.902 37.500 0.00 0.00 0.00 4.75
2419 2605 2.043248 AGGTACGCGGAGGTCCAT 60.043 61.111 12.47 0.00 35.14 3.41
2467 2653 3.738281 CGCACCGATTCTCTTACAAGGAT 60.738 47.826 0.00 0.00 0.00 3.24
2715 2907 5.728741 AGGGAGAATTTCTCTTGGTCTATGT 59.271 40.000 22.34 0.00 42.95 2.29
2923 3458 0.673022 GCTTCTGTGCTCTCACCCAG 60.673 60.000 0.00 0.00 42.46 4.45
3112 3647 3.157881 AGTGTCGTTTCTGATCTCTCCA 58.842 45.455 0.00 0.00 0.00 3.86
3498 4038 5.633601 AGCCACATGATTATATTCACGTACG 59.366 40.000 15.01 15.01 0.00 3.67
3572 4403 6.309009 GTCATCATAATGTACCATCTACTGCG 59.691 42.308 0.00 0.00 34.32 5.18
3701 4532 6.668645 ACTAGCTAGAGGAGAGAATGAAAGA 58.331 40.000 27.45 0.00 0.00 2.52
3874 4705 6.494893 TTAATTGCTACAGCCAACTTACAG 57.505 37.500 0.00 0.00 41.18 2.74
4066 5076 6.430925 AGAAATCACTCAATCAACGAAATCCA 59.569 34.615 0.00 0.00 0.00 3.41
4094 7308 7.772757 TCACACATATGCTAAATCCACATACAA 59.227 33.333 1.58 0.00 0.00 2.41
4104 7318 9.120538 GCTAAATCCACATACAAATAAAGGAGA 57.879 33.333 0.00 0.00 0.00 3.71
4142 7356 7.074653 AGTTAACACAAGAGGATACAAAGGA 57.925 36.000 8.61 0.00 41.41 3.36
4155 7369 5.163612 GGATACAAAGGAAGCAAGTTCATCC 60.164 44.000 0.00 0.00 36.82 3.51
4197 7411 8.800370 AGGTCTTGAATTCTAAAAGGATCTTC 57.200 34.615 7.05 0.00 0.00 2.87
4244 7458 2.122768 GGGGATCTTCTCACATGGAGT 58.877 52.381 0.00 0.00 44.40 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.258826 GTATTTTATTTATTGCCATGCATGACA 57.741 29.630 28.31 20.53 38.76 3.58
1 2 9.480053 AGTATTTTATTTATTGCCATGCATGAC 57.520 29.630 28.31 17.77 38.76 3.06
50 51 9.936329 TGTATGATACTATCTCCCTAATGCATA 57.064 33.333 0.00 0.00 0.00 3.14
51 52 8.844865 TGTATGATACTATCTCCCTAATGCAT 57.155 34.615 4.03 0.00 0.00 3.96
52 53 7.895962 ACTGTATGATACTATCTCCCTAATGCA 59.104 37.037 4.03 0.00 0.00 3.96
53 54 8.299990 ACTGTATGATACTATCTCCCTAATGC 57.700 38.462 4.03 0.00 0.00 3.56
69 70 9.901172 ATCATGCATGTGATATTACTGTATGAT 57.099 29.630 25.43 22.11 41.62 2.45
74 75 9.866798 CTAGTATCATGCATGTGATATTACTGT 57.133 33.333 25.43 7.67 41.62 3.55
75 76 9.866798 ACTAGTATCATGCATGTGATATTACTG 57.133 33.333 25.43 16.76 41.62 2.74
99 100 9.642343 TGGTTGTAGTGAAGAGTATCATATACT 57.358 33.333 0.00 0.00 37.82 2.12
100 101 9.900710 CTGGTTGTAGTGAAGAGTATCATATAC 57.099 37.037 0.00 0.00 37.82 1.47
101 102 8.577296 GCTGGTTGTAGTGAAGAGTATCATATA 58.423 37.037 0.00 0.00 37.82 0.86
102 103 7.288852 AGCTGGTTGTAGTGAAGAGTATCATAT 59.711 37.037 0.00 0.00 37.82 1.78
103 104 6.607600 AGCTGGTTGTAGTGAAGAGTATCATA 59.392 38.462 0.00 0.00 37.82 2.15
104 105 5.423610 AGCTGGTTGTAGTGAAGAGTATCAT 59.576 40.000 0.00 0.00 37.82 2.45
105 106 4.772624 AGCTGGTTGTAGTGAAGAGTATCA 59.227 41.667 0.00 0.00 37.82 2.15
106 107 5.331876 AGCTGGTTGTAGTGAAGAGTATC 57.668 43.478 0.00 0.00 0.00 2.24
107 108 5.746990 AAGCTGGTTGTAGTGAAGAGTAT 57.253 39.130 0.00 0.00 0.00 2.12
108 109 5.546621 AAAGCTGGTTGTAGTGAAGAGTA 57.453 39.130 0.00 0.00 0.00 2.59
109 110 4.423625 AAAGCTGGTTGTAGTGAAGAGT 57.576 40.909 0.00 0.00 0.00 3.24
110 111 5.177696 GTGTAAAGCTGGTTGTAGTGAAGAG 59.822 44.000 0.00 0.00 0.00 2.85
111 112 5.054477 GTGTAAAGCTGGTTGTAGTGAAGA 58.946 41.667 0.00 0.00 0.00 2.87
112 113 4.213482 GGTGTAAAGCTGGTTGTAGTGAAG 59.787 45.833 0.00 0.00 0.00 3.02
113 114 4.131596 GGTGTAAAGCTGGTTGTAGTGAA 58.868 43.478 0.00 0.00 0.00 3.18
114 115 3.735591 GGTGTAAAGCTGGTTGTAGTGA 58.264 45.455 0.00 0.00 0.00 3.41
115 116 2.478894 CGGTGTAAAGCTGGTTGTAGTG 59.521 50.000 0.00 0.00 0.00 2.74
116 117 2.762745 CGGTGTAAAGCTGGTTGTAGT 58.237 47.619 0.00 0.00 0.00 2.73
117 118 1.463444 GCGGTGTAAAGCTGGTTGTAG 59.537 52.381 0.00 0.00 0.00 2.74
118 119 1.071071 AGCGGTGTAAAGCTGGTTGTA 59.929 47.619 0.00 0.00 42.82 2.41
119 120 0.179029 AGCGGTGTAAAGCTGGTTGT 60.179 50.000 0.00 0.00 42.82 3.32
120 121 0.951558 AAGCGGTGTAAAGCTGGTTG 59.048 50.000 0.00 0.00 43.78 3.77
121 122 1.336755 CAAAGCGGTGTAAAGCTGGTT 59.663 47.619 0.00 0.00 43.78 3.67
122 123 0.951558 CAAAGCGGTGTAAAGCTGGT 59.048 50.000 0.00 0.00 43.78 4.00
123 124 0.387239 GCAAAGCGGTGTAAAGCTGG 60.387 55.000 0.00 0.00 43.78 4.85
124 125 0.387239 GGCAAAGCGGTGTAAAGCTG 60.387 55.000 0.00 0.00 43.78 4.24
125 126 0.821711 TGGCAAAGCGGTGTAAAGCT 60.822 50.000 0.00 0.00 46.97 3.74
126 127 0.031449 TTGGCAAAGCGGTGTAAAGC 59.969 50.000 0.00 0.00 0.00 3.51
127 128 1.766069 GTTGGCAAAGCGGTGTAAAG 58.234 50.000 0.00 0.00 0.00 1.85
128 129 0.029567 CGTTGGCAAAGCGGTGTAAA 59.970 50.000 0.00 0.00 0.00 2.01
129 130 1.096386 ACGTTGGCAAAGCGGTGTAA 61.096 50.000 13.15 0.00 0.00 2.41
130 131 1.524165 ACGTTGGCAAAGCGGTGTA 60.524 52.632 13.15 0.00 0.00 2.90
131 132 2.826738 ACGTTGGCAAAGCGGTGT 60.827 55.556 13.15 0.00 0.00 4.16
132 133 2.353376 CACGTTGGCAAAGCGGTG 60.353 61.111 13.15 9.78 0.00 4.94
133 134 3.591835 CCACGTTGGCAAAGCGGT 61.592 61.111 13.15 1.11 0.00 5.68
134 135 4.341502 CCCACGTTGGCAAAGCGG 62.342 66.667 13.15 12.79 35.79 5.52
135 136 4.341502 CCCCACGTTGGCAAAGCG 62.342 66.667 13.15 10.68 35.79 4.68
136 137 1.457009 TTACCCCACGTTGGCAAAGC 61.457 55.000 13.15 0.00 35.79 3.51
137 138 0.596082 CTTACCCCACGTTGGCAAAG 59.404 55.000 11.68 11.68 35.79 2.77
138 139 1.457009 GCTTACCCCACGTTGGCAAA 61.457 55.000 0.00 0.00 35.79 3.68
139 140 1.899534 GCTTACCCCACGTTGGCAA 60.900 57.895 0.00 0.00 35.79 4.52
140 141 2.281900 GCTTACCCCACGTTGGCA 60.282 61.111 0.00 0.00 35.79 4.92
141 142 3.060000 GGCTTACCCCACGTTGGC 61.060 66.667 0.00 0.00 35.79 4.52
142 143 2.744709 CGGCTTACCCCACGTTGG 60.745 66.667 0.00 0.00 37.25 3.77
143 144 1.740296 CTCGGCTTACCCCACGTTG 60.740 63.158 0.00 0.00 0.00 4.10
144 145 1.909781 TCTCGGCTTACCCCACGTT 60.910 57.895 0.00 0.00 0.00 3.99
145 146 2.283388 TCTCGGCTTACCCCACGT 60.283 61.111 0.00 0.00 0.00 4.49
146 147 2.183555 GTCTCGGCTTACCCCACG 59.816 66.667 0.00 0.00 0.00 4.94
147 148 2.183555 CGTCTCGGCTTACCCCAC 59.816 66.667 0.00 0.00 0.00 4.61
148 149 3.072468 CCGTCTCGGCTTACCCCA 61.072 66.667 0.00 0.00 41.17 4.96
158 159 0.878523 TGGTCAACAAAGCCGTCTCG 60.879 55.000 0.00 0.00 0.00 4.04
159 160 1.305201 TTGGTCAACAAAGCCGTCTC 58.695 50.000 0.00 0.00 35.79 3.36
160 161 1.757682 TTTGGTCAACAAAGCCGTCT 58.242 45.000 0.00 0.00 43.81 4.18
167 168 6.578023 CCCTCACTTATTTTTGGTCAACAAA 58.422 36.000 0.00 0.00 46.82 2.83
168 169 5.452636 GCCCTCACTTATTTTTGGTCAACAA 60.453 40.000 0.00 0.00 37.28 2.83
169 170 4.038642 GCCCTCACTTATTTTTGGTCAACA 59.961 41.667 0.00 0.00 0.00 3.33
170 171 4.280929 AGCCCTCACTTATTTTTGGTCAAC 59.719 41.667 0.00 0.00 0.00 3.18
171 172 4.479158 AGCCCTCACTTATTTTTGGTCAA 58.521 39.130 0.00 0.00 0.00 3.18
172 173 4.079253 GAGCCCTCACTTATTTTTGGTCA 58.921 43.478 0.00 0.00 0.00 4.02
173 174 3.444034 GGAGCCCTCACTTATTTTTGGTC 59.556 47.826 0.00 0.00 0.00 4.02
174 175 3.431415 GGAGCCCTCACTTATTTTTGGT 58.569 45.455 0.00 0.00 0.00 3.67
175 176 2.760650 GGGAGCCCTCACTTATTTTTGG 59.239 50.000 0.00 0.00 0.00 3.28
176 177 2.423538 CGGGAGCCCTCACTTATTTTTG 59.576 50.000 3.70 0.00 0.00 2.44
177 178 2.723273 CGGGAGCCCTCACTTATTTTT 58.277 47.619 3.70 0.00 0.00 1.94
178 179 2.420058 CGGGAGCCCTCACTTATTTT 57.580 50.000 3.70 0.00 0.00 1.82
192 193 1.357334 GCGAGAAGAGTAGCGGGAG 59.643 63.158 0.00 0.00 0.00 4.30
193 194 3.510846 GCGAGAAGAGTAGCGGGA 58.489 61.111 0.00 0.00 0.00 5.14
206 207 3.781770 GAGGTGGCCAGATCGCGAG 62.782 68.421 16.66 0.99 0.00 5.03
207 208 3.838271 GAGGTGGCCAGATCGCGA 61.838 66.667 13.09 13.09 0.00 5.87
225 226 4.884257 CATGGCAATGCAGGCGGC 62.884 66.667 7.79 0.00 45.13 6.53
226 227 3.142162 TCATGGCAATGCAGGCGG 61.142 61.111 7.79 0.62 36.77 6.13
227 228 2.103538 GTCATGGCAATGCAGGCG 59.896 61.111 7.79 0.00 36.77 5.52
228 229 0.738412 GTTGTCATGGCAATGCAGGC 60.738 55.000 17.07 4.63 33.47 4.85
229 230 0.108520 GGTTGTCATGGCAATGCAGG 60.109 55.000 17.07 0.00 33.47 4.85
230 231 0.892755 AGGTTGTCATGGCAATGCAG 59.107 50.000 17.07 0.00 33.47 4.41
231 232 0.889994 GAGGTTGTCATGGCAATGCA 59.110 50.000 17.07 0.00 33.47 3.96
232 233 0.174162 GGAGGTTGTCATGGCAATGC 59.826 55.000 17.07 8.46 33.47 3.56
233 234 0.819582 GGGAGGTTGTCATGGCAATG 59.180 55.000 17.07 0.00 34.88 2.82
234 235 0.324645 GGGGAGGTTGTCATGGCAAT 60.325 55.000 17.07 0.00 0.00 3.56
235 236 1.076549 GGGGAGGTTGTCATGGCAA 59.923 57.895 9.09 9.09 0.00 4.52
236 237 2.763215 GGGGAGGTTGTCATGGCA 59.237 61.111 0.00 0.00 0.00 4.92
237 238 2.043953 GGGGGAGGTTGTCATGGC 60.044 66.667 0.00 0.00 0.00 4.40
238 239 2.272146 CGGGGGAGGTTGTCATGG 59.728 66.667 0.00 0.00 0.00 3.66
239 240 1.078426 GACGGGGGAGGTTGTCATG 60.078 63.158 0.00 0.00 0.00 3.07
240 241 2.298661 GGACGGGGGAGGTTGTCAT 61.299 63.158 0.00 0.00 33.04 3.06
241 242 2.926242 GGACGGGGGAGGTTGTCA 60.926 66.667 0.00 0.00 33.04 3.58
242 243 2.926242 TGGACGGGGGAGGTTGTC 60.926 66.667 0.00 0.00 0.00 3.18
243 244 3.246880 GTGGACGGGGGAGGTTGT 61.247 66.667 0.00 0.00 0.00 3.32
244 245 4.029809 GGTGGACGGGGGAGGTTG 62.030 72.222 0.00 0.00 0.00 3.77
251 252 4.016706 GAGTGTGGGTGGACGGGG 62.017 72.222 0.00 0.00 0.00 5.73
252 253 3.238497 TGAGTGTGGGTGGACGGG 61.238 66.667 0.00 0.00 0.00 5.28
253 254 2.343758 CTGAGTGTGGGTGGACGG 59.656 66.667 0.00 0.00 0.00 4.79
254 255 2.357517 GCTGAGTGTGGGTGGACG 60.358 66.667 0.00 0.00 0.00 4.79
255 256 2.032681 GGCTGAGTGTGGGTGGAC 59.967 66.667 0.00 0.00 0.00 4.02
256 257 3.625897 CGGCTGAGTGTGGGTGGA 61.626 66.667 0.00 0.00 0.00 4.02
258 259 4.624364 TGCGGCTGAGTGTGGGTG 62.624 66.667 0.00 0.00 0.00 4.61
259 260 4.320456 CTGCGGCTGAGTGTGGGT 62.320 66.667 0.00 0.00 0.00 4.51
261 262 3.947132 CTCCTGCGGCTGAGTGTGG 62.947 68.421 8.57 0.00 0.00 4.17
262 263 2.433838 CTCCTGCGGCTGAGTGTG 60.434 66.667 8.57 0.00 0.00 3.82
263 264 4.385405 GCTCCTGCGGCTGAGTGT 62.385 66.667 17.26 0.00 0.00 3.55
294 295 2.689573 ATATCAGGTGGCGGGGGCTA 62.690 60.000 0.00 0.00 0.00 3.93
295 296 4.815973 TATCAGGTGGCGGGGGCT 62.816 66.667 0.00 0.00 0.00 5.19
296 297 3.570212 ATATCAGGTGGCGGGGGC 61.570 66.667 0.00 0.00 0.00 5.80
297 298 2.431683 CATATCAGGTGGCGGGGG 59.568 66.667 0.00 0.00 0.00 5.40
298 299 2.146724 TCCATATCAGGTGGCGGGG 61.147 63.158 0.00 0.00 36.66 5.73
299 300 1.071471 GTCCATATCAGGTGGCGGG 59.929 63.158 0.00 0.00 36.66 6.13
300 301 0.469917 AAGTCCATATCAGGTGGCGG 59.530 55.000 0.00 0.00 36.66 6.13
301 302 1.541233 GGAAGTCCATATCAGGTGGCG 60.541 57.143 0.00 0.00 36.66 5.69
302 303 1.541233 CGGAAGTCCATATCAGGTGGC 60.541 57.143 0.00 0.00 36.66 5.01
303 304 1.541233 GCGGAAGTCCATATCAGGTGG 60.541 57.143 0.00 0.00 38.11 4.61
304 305 1.414181 AGCGGAAGTCCATATCAGGTG 59.586 52.381 0.00 0.00 35.14 4.00
305 306 1.689273 GAGCGGAAGTCCATATCAGGT 59.311 52.381 0.00 0.00 35.14 4.00
306 307 1.001406 GGAGCGGAAGTCCATATCAGG 59.999 57.143 0.00 0.00 33.84 3.86
307 308 1.967066 AGGAGCGGAAGTCCATATCAG 59.033 52.381 0.00 0.00 36.43 2.90
308 309 2.088104 AGGAGCGGAAGTCCATATCA 57.912 50.000 0.00 0.00 36.43 2.15
309 310 2.103263 ACAAGGAGCGGAAGTCCATATC 59.897 50.000 0.00 0.00 36.43 1.63
310 311 2.119495 ACAAGGAGCGGAAGTCCATAT 58.881 47.619 0.00 0.00 36.43 1.78
311 312 1.568504 ACAAGGAGCGGAAGTCCATA 58.431 50.000 0.00 0.00 36.43 2.74
312 313 0.693049 AACAAGGAGCGGAAGTCCAT 59.307 50.000 0.00 0.00 36.43 3.41
313 314 0.250295 CAACAAGGAGCGGAAGTCCA 60.250 55.000 0.00 0.00 36.43 4.02
314 315 0.955919 CCAACAAGGAGCGGAAGTCC 60.956 60.000 0.00 0.00 41.22 3.85
315 316 1.578206 GCCAACAAGGAGCGGAAGTC 61.578 60.000 0.00 0.00 41.22 3.01
316 317 1.600916 GCCAACAAGGAGCGGAAGT 60.601 57.895 0.00 0.00 41.22 3.01
317 318 2.680913 CGCCAACAAGGAGCGGAAG 61.681 63.158 0.00 0.00 45.88 3.46
318 319 2.668212 CGCCAACAAGGAGCGGAA 60.668 61.111 0.00 0.00 45.88 4.30
322 323 3.056328 GGGTCGCCAACAAGGAGC 61.056 66.667 0.00 0.00 41.22 4.70
323 324 1.672356 CAGGGTCGCCAACAAGGAG 60.672 63.158 0.00 0.00 41.22 3.69
324 325 1.488705 ATCAGGGTCGCCAACAAGGA 61.489 55.000 0.00 0.00 41.22 3.36
325 326 1.002134 ATCAGGGTCGCCAACAAGG 60.002 57.895 0.00 0.00 41.84 3.61
326 327 1.926511 GCATCAGGGTCGCCAACAAG 61.927 60.000 0.00 0.00 0.00 3.16
327 328 1.971167 GCATCAGGGTCGCCAACAA 60.971 57.895 0.00 0.00 0.00 2.83
328 329 2.359850 GCATCAGGGTCGCCAACA 60.360 61.111 0.00 0.00 0.00 3.33
329 330 1.648467 GAAGCATCAGGGTCGCCAAC 61.648 60.000 0.00 0.00 0.00 3.77
330 331 1.377202 GAAGCATCAGGGTCGCCAA 60.377 57.895 0.00 0.00 0.00 4.52
331 332 2.244117 GAGAAGCATCAGGGTCGCCA 62.244 60.000 0.00 0.00 0.00 5.69
332 333 1.522580 GAGAAGCATCAGGGTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
333 334 1.522580 GGAGAAGCATCAGGGTCGC 60.523 63.158 0.00 0.00 0.00 5.19
334 335 1.227089 CGGAGAAGCATCAGGGTCG 60.227 63.158 0.00 0.00 0.00 4.79
335 336 0.179097 GTCGGAGAAGCATCAGGGTC 60.179 60.000 0.00 0.00 39.69 4.46
336 337 0.616111 AGTCGGAGAAGCATCAGGGT 60.616 55.000 0.00 0.00 39.69 4.34
337 338 0.539051 AAGTCGGAGAAGCATCAGGG 59.461 55.000 0.00 0.00 39.69 4.45
338 339 1.205655 TGAAGTCGGAGAAGCATCAGG 59.794 52.381 0.00 0.00 39.69 3.86
339 340 2.662006 TGAAGTCGGAGAAGCATCAG 57.338 50.000 0.00 0.00 39.69 2.90
340 341 3.329386 CTTTGAAGTCGGAGAAGCATCA 58.671 45.455 0.00 0.00 39.69 3.07
341 342 2.095053 GCTTTGAAGTCGGAGAAGCATC 59.905 50.000 0.00 0.00 41.64 3.91
342 343 2.079925 GCTTTGAAGTCGGAGAAGCAT 58.920 47.619 0.00 0.00 41.64 3.79
343 344 1.512926 GCTTTGAAGTCGGAGAAGCA 58.487 50.000 0.00 0.00 41.64 3.91
344 345 1.462670 CTGCTTTGAAGTCGGAGAAGC 59.537 52.381 0.00 0.00 39.69 3.86
345 346 2.072298 CCTGCTTTGAAGTCGGAGAAG 58.928 52.381 0.00 0.00 39.69 2.85
346 347 1.691976 TCCTGCTTTGAAGTCGGAGAA 59.308 47.619 0.00 0.00 39.69 2.87
347 348 1.338107 TCCTGCTTTGAAGTCGGAGA 58.662 50.000 0.00 0.00 0.00 3.71
348 349 2.169832 TTCCTGCTTTGAAGTCGGAG 57.830 50.000 0.00 0.00 0.00 4.63
349 350 2.631160 TTTCCTGCTTTGAAGTCGGA 57.369 45.000 0.00 0.00 0.00 4.55
350 351 3.708563 TTTTTCCTGCTTTGAAGTCGG 57.291 42.857 0.00 0.00 0.00 4.79
368 369 9.829507 TTTAAATGTTGATCTCCATGTGTTTTT 57.170 25.926 0.00 0.00 0.00 1.94
369 370 9.480053 CTTTAAATGTTGATCTCCATGTGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
370 371 8.090214 CCTTTAAATGTTGATCTCCATGTGTTT 58.910 33.333 0.00 0.00 0.00 2.83
371 372 7.451255 TCCTTTAAATGTTGATCTCCATGTGTT 59.549 33.333 0.00 0.00 0.00 3.32
372 373 6.947733 TCCTTTAAATGTTGATCTCCATGTGT 59.052 34.615 0.00 0.00 0.00 3.72
373 374 7.395190 TCCTTTAAATGTTGATCTCCATGTG 57.605 36.000 0.00 0.00 0.00 3.21
374 375 8.421249 TTTCCTTTAAATGTTGATCTCCATGT 57.579 30.769 0.00 0.00 0.00 3.21
375 376 9.880157 AATTTCCTTTAAATGTTGATCTCCATG 57.120 29.630 0.00 0.00 37.85 3.66
377 378 8.531146 GGAATTTCCTTTAAATGTTGATCTCCA 58.469 33.333 8.25 0.00 37.85 3.86
378 379 8.531146 TGGAATTTCCTTTAAATGTTGATCTCC 58.469 33.333 16.25 0.00 37.85 3.71
380 381 9.880157 CATGGAATTTCCTTTAAATGTTGATCT 57.120 29.630 16.25 0.00 37.85 2.75
381 382 9.101655 CCATGGAATTTCCTTTAAATGTTGATC 57.898 33.333 16.25 0.00 37.85 2.92
382 383 8.824783 TCCATGGAATTTCCTTTAAATGTTGAT 58.175 29.630 13.46 0.00 37.85 2.57
383 384 8.200024 TCCATGGAATTTCCTTTAAATGTTGA 57.800 30.769 13.46 3.20 37.85 3.18
384 385 8.845413 TTCCATGGAATTTCCTTTAAATGTTG 57.155 30.769 23.63 1.17 37.85 3.33
385 386 9.283768 GTTTCCATGGAATTTCCTTTAAATGTT 57.716 29.630 27.53 0.00 37.85 2.71
386 387 7.882791 GGTTTCCATGGAATTTCCTTTAAATGT 59.117 33.333 27.53 0.00 37.85 2.71
387 388 7.064490 CGGTTTCCATGGAATTTCCTTTAAATG 59.936 37.037 27.53 10.51 37.85 2.32
388 389 7.102993 CGGTTTCCATGGAATTTCCTTTAAAT 58.897 34.615 27.53 0.00 39.56 1.40
389 390 6.459923 CGGTTTCCATGGAATTTCCTTTAAA 58.540 36.000 27.53 6.04 37.46 1.52
390 391 5.567823 GCGGTTTCCATGGAATTTCCTTTAA 60.568 40.000 27.53 6.82 37.46 1.52
391 392 4.081917 GCGGTTTCCATGGAATTTCCTTTA 60.082 41.667 27.53 7.58 37.46 1.85
392 393 3.306710 GCGGTTTCCATGGAATTTCCTTT 60.307 43.478 27.53 1.69 37.46 3.11
393 394 2.233676 GCGGTTTCCATGGAATTTCCTT 59.766 45.455 27.53 7.47 37.46 3.36
394 395 1.824852 GCGGTTTCCATGGAATTTCCT 59.175 47.619 27.53 0.00 37.46 3.36
395 396 1.548269 TGCGGTTTCCATGGAATTTCC 59.452 47.619 27.53 24.74 36.96 3.13
396 397 3.525268 ATGCGGTTTCCATGGAATTTC 57.475 42.857 27.53 19.06 33.79 2.17
397 398 3.979101 AATGCGGTTTCCATGGAATTT 57.021 38.095 27.53 11.58 33.79 1.82
398 399 3.979101 AAATGCGGTTTCCATGGAATT 57.021 38.095 27.53 14.78 33.79 2.17
399 400 3.979101 AAAATGCGGTTTCCATGGAAT 57.021 38.095 27.53 9.13 33.79 3.01
400 401 4.873746 TTAAAATGCGGTTTCCATGGAA 57.126 36.364 23.63 23.63 0.00 3.53
401 402 4.282195 ACTTTAAAATGCGGTTTCCATGGA 59.718 37.500 11.44 11.44 0.00 3.41
402 403 4.565022 ACTTTAAAATGCGGTTTCCATGG 58.435 39.130 4.97 4.97 0.00 3.66
403 404 6.538189 AAACTTTAAAATGCGGTTTCCATG 57.462 33.333 0.00 0.00 0.00 3.66
404 405 7.662897 TCTAAACTTTAAAATGCGGTTTCCAT 58.337 30.769 5.96 0.00 33.18 3.41
405 406 7.040473 TCTAAACTTTAAAATGCGGTTTCCA 57.960 32.000 5.96 0.00 33.18 3.53
406 407 7.933728 TTCTAAACTTTAAAATGCGGTTTCC 57.066 32.000 5.96 0.00 33.18 3.13
442 443 4.455877 CGCTCTCAACATCCCTTAGTTTTT 59.544 41.667 0.00 0.00 0.00 1.94
443 444 4.003648 CGCTCTCAACATCCCTTAGTTTT 58.996 43.478 0.00 0.00 0.00 2.43
444 445 3.008049 ACGCTCTCAACATCCCTTAGTTT 59.992 43.478 0.00 0.00 0.00 2.66
445 446 2.567615 ACGCTCTCAACATCCCTTAGTT 59.432 45.455 0.00 0.00 0.00 2.24
446 447 2.180276 ACGCTCTCAACATCCCTTAGT 58.820 47.619 0.00 0.00 0.00 2.24
447 448 2.969628 ACGCTCTCAACATCCCTTAG 57.030 50.000 0.00 0.00 0.00 2.18
448 449 4.404394 TCATAACGCTCTCAACATCCCTTA 59.596 41.667 0.00 0.00 0.00 2.69
449 450 3.197766 TCATAACGCTCTCAACATCCCTT 59.802 43.478 0.00 0.00 0.00 3.95
450 451 2.766263 TCATAACGCTCTCAACATCCCT 59.234 45.455 0.00 0.00 0.00 4.20
451 452 3.179443 TCATAACGCTCTCAACATCCC 57.821 47.619 0.00 0.00 0.00 3.85
452 453 4.494855 GCTTTCATAACGCTCTCAACATCC 60.495 45.833 0.00 0.00 0.00 3.51
453 454 4.582459 GCTTTCATAACGCTCTCAACATC 58.418 43.478 0.00 0.00 0.00 3.06
454 455 3.062639 CGCTTTCATAACGCTCTCAACAT 59.937 43.478 0.00 0.00 0.00 2.71
455 456 2.411748 CGCTTTCATAACGCTCTCAACA 59.588 45.455 0.00 0.00 0.00 3.33
456 457 2.222819 CCGCTTTCATAACGCTCTCAAC 60.223 50.000 0.00 0.00 0.00 3.18
457 458 1.999735 CCGCTTTCATAACGCTCTCAA 59.000 47.619 0.00 0.00 0.00 3.02
458 459 1.640428 CCGCTTTCATAACGCTCTCA 58.360 50.000 0.00 0.00 0.00 3.27
459 460 0.931005 CCCGCTTTCATAACGCTCTC 59.069 55.000 0.00 0.00 0.00 3.20
460 461 0.535335 TCCCGCTTTCATAACGCTCT 59.465 50.000 0.00 0.00 0.00 4.09
461 462 1.583054 ATCCCGCTTTCATAACGCTC 58.417 50.000 0.00 0.00 0.00 5.03
462 463 1.670811 CAATCCCGCTTTCATAACGCT 59.329 47.619 0.00 0.00 0.00 5.07
463 464 1.859998 GCAATCCCGCTTTCATAACGC 60.860 52.381 0.00 0.00 0.00 4.84
464 465 1.670811 AGCAATCCCGCTTTCATAACG 59.329 47.619 0.00 0.00 39.99 3.18
465 466 4.893424 TTAGCAATCCCGCTTTCATAAC 57.107 40.909 0.00 0.00 43.56 1.89
466 467 5.827797 AGATTTAGCAATCCCGCTTTCATAA 59.172 36.000 0.00 0.00 43.56 1.90
467 468 5.376625 AGATTTAGCAATCCCGCTTTCATA 58.623 37.500 0.00 0.00 43.56 2.15
468 469 4.210331 AGATTTAGCAATCCCGCTTTCAT 58.790 39.130 0.00 0.00 43.56 2.57
469 470 3.620488 AGATTTAGCAATCCCGCTTTCA 58.380 40.909 0.00 0.00 43.56 2.69
470 471 4.639135 AAGATTTAGCAATCCCGCTTTC 57.361 40.909 0.00 0.00 43.56 2.62
471 472 5.193679 ACTAAGATTTAGCAATCCCGCTTT 58.806 37.500 0.00 0.00 43.56 3.51
472 473 4.781934 ACTAAGATTTAGCAATCCCGCTT 58.218 39.130 0.00 0.00 43.56 4.68
473 474 4.381411 GACTAAGATTTAGCAATCCCGCT 58.619 43.478 0.00 0.00 46.26 5.52
474 475 3.184581 CGACTAAGATTTAGCAATCCCGC 59.815 47.826 0.00 0.00 39.95 6.13
475 476 4.444720 GTCGACTAAGATTTAGCAATCCCG 59.555 45.833 8.70 0.00 39.95 5.14
476 477 5.463724 CAGTCGACTAAGATTTAGCAATCCC 59.536 44.000 19.57 0.00 39.95 3.85
477 478 6.273825 TCAGTCGACTAAGATTTAGCAATCC 58.726 40.000 19.57 0.00 39.95 3.01
478 479 7.166804 GTCTCAGTCGACTAAGATTTAGCAATC 59.833 40.741 21.21 1.82 39.45 2.67
479 480 6.975772 GTCTCAGTCGACTAAGATTTAGCAAT 59.024 38.462 21.21 0.00 0.00 3.56
480 481 6.151312 AGTCTCAGTCGACTAAGATTTAGCAA 59.849 38.462 21.21 0.00 42.19 3.91
481 482 5.648526 AGTCTCAGTCGACTAAGATTTAGCA 59.351 40.000 21.21 0.00 42.19 3.49
482 483 6.126568 AGTCTCAGTCGACTAAGATTTAGC 57.873 41.667 21.21 8.30 42.19 3.09
483 484 8.885722 AGTAAGTCTCAGTCGACTAAGATTTAG 58.114 37.037 25.86 10.57 43.14 1.85
484 485 8.789825 AGTAAGTCTCAGTCGACTAAGATTTA 57.210 34.615 23.00 23.00 43.14 1.40
485 486 7.390996 TGAGTAAGTCTCAGTCGACTAAGATTT 59.609 37.037 24.73 24.73 46.77 2.17
486 487 6.879993 TGAGTAAGTCTCAGTCGACTAAGATT 59.120 38.462 21.21 14.59 46.77 2.40
487 488 6.408035 TGAGTAAGTCTCAGTCGACTAAGAT 58.592 40.000 21.21 9.22 46.77 2.40
488 489 5.791666 TGAGTAAGTCTCAGTCGACTAAGA 58.208 41.667 19.57 17.01 46.77 2.10
500 501 3.562567 AGCGTCAACTGAGTAAGTCTC 57.437 47.619 0.00 0.00 38.56 3.36
501 502 6.945938 ATATAGCGTCAACTGAGTAAGTCT 57.054 37.500 0.00 0.00 38.56 3.24
502 503 7.194278 TGAATATAGCGTCAACTGAGTAAGTC 58.806 38.462 0.00 0.00 38.56 3.01
503 504 7.096884 TGAATATAGCGTCAACTGAGTAAGT 57.903 36.000 0.00 0.00 42.60 2.24
504 505 8.483218 CAATGAATATAGCGTCAACTGAGTAAG 58.517 37.037 0.00 0.00 0.00 2.34
505 506 7.438160 CCAATGAATATAGCGTCAACTGAGTAA 59.562 37.037 0.00 0.00 0.00 2.24
506 507 6.923508 CCAATGAATATAGCGTCAACTGAGTA 59.076 38.462 0.00 0.00 0.00 2.59
507 508 5.755375 CCAATGAATATAGCGTCAACTGAGT 59.245 40.000 0.00 0.00 0.00 3.41
508 509 5.985530 TCCAATGAATATAGCGTCAACTGAG 59.014 40.000 0.00 0.00 0.00 3.35
509 510 5.912892 TCCAATGAATATAGCGTCAACTGA 58.087 37.500 0.00 0.00 0.00 3.41
510 511 6.648310 AGATCCAATGAATATAGCGTCAACTG 59.352 38.462 0.00 0.00 0.00 3.16
511 512 6.763355 AGATCCAATGAATATAGCGTCAACT 58.237 36.000 0.00 0.00 0.00 3.16
512 513 7.426929 AAGATCCAATGAATATAGCGTCAAC 57.573 36.000 0.00 0.00 0.00 3.18
513 514 8.147704 TGTAAGATCCAATGAATATAGCGTCAA 58.852 33.333 0.00 0.00 0.00 3.18
514 515 7.598869 GTGTAAGATCCAATGAATATAGCGTCA 59.401 37.037 0.00 0.00 0.00 4.35
515 516 7.201359 CGTGTAAGATCCAATGAATATAGCGTC 60.201 40.741 0.00 0.00 0.00 5.19
516 517 6.586463 CGTGTAAGATCCAATGAATATAGCGT 59.414 38.462 0.00 0.00 0.00 5.07
517 518 6.035005 CCGTGTAAGATCCAATGAATATAGCG 59.965 42.308 0.00 0.00 0.00 4.26
518 519 7.097192 TCCGTGTAAGATCCAATGAATATAGC 58.903 38.462 0.00 0.00 0.00 2.97
519 520 8.523658 TCTCCGTGTAAGATCCAATGAATATAG 58.476 37.037 0.00 0.00 0.00 1.31
520 521 8.417273 TCTCCGTGTAAGATCCAATGAATATA 57.583 34.615 0.00 0.00 0.00 0.86
521 522 7.303182 TCTCCGTGTAAGATCCAATGAATAT 57.697 36.000 0.00 0.00 0.00 1.28
522 523 6.724893 TCTCCGTGTAAGATCCAATGAATA 57.275 37.500 0.00 0.00 0.00 1.75
523 524 5.614324 TCTCCGTGTAAGATCCAATGAAT 57.386 39.130 0.00 0.00 0.00 2.57
524 525 5.601662 GATCTCCGTGTAAGATCCAATGAA 58.398 41.667 2.39 0.00 42.13 2.57
525 526 5.201713 GATCTCCGTGTAAGATCCAATGA 57.798 43.478 2.39 0.00 42.13 2.57
541 542 4.877323 AGAAAATTTTACGCGGATCTCC 57.123 40.909 12.47 0.00 0.00 3.71
542 543 6.543736 AGAAAGAAAATTTTACGCGGATCTC 58.456 36.000 12.47 0.00 0.00 2.75
543 544 6.496338 AGAAAGAAAATTTTACGCGGATCT 57.504 33.333 12.47 0.00 0.00 2.75
544 545 7.461918 ACTAGAAAGAAAATTTTACGCGGATC 58.538 34.615 12.47 0.00 0.00 3.36
545 546 7.373778 ACTAGAAAGAAAATTTTACGCGGAT 57.626 32.000 12.47 0.00 0.00 4.18
546 547 6.790285 ACTAGAAAGAAAATTTTACGCGGA 57.210 33.333 12.47 0.00 0.00 5.54
547 548 7.847166 AAACTAGAAAGAAAATTTTACGCGG 57.153 32.000 12.47 0.00 0.00 6.46
572 573 6.611613 TTGGCATAACATGTATGGGAAAAA 57.388 33.333 0.00 0.00 0.00 1.94
573 574 6.805016 ATTGGCATAACATGTATGGGAAAA 57.195 33.333 0.00 0.00 0.00 2.29
574 575 6.382282 TCAATTGGCATAACATGTATGGGAAA 59.618 34.615 5.42 0.00 0.00 3.13
575 576 5.896106 TCAATTGGCATAACATGTATGGGAA 59.104 36.000 5.42 0.00 0.00 3.97
576 577 5.301551 GTCAATTGGCATAACATGTATGGGA 59.698 40.000 4.85 0.00 0.00 4.37
577 578 5.302568 AGTCAATTGGCATAACATGTATGGG 59.697 40.000 13.47 0.00 0.00 4.00
578 579 6.395426 AGTCAATTGGCATAACATGTATGG 57.605 37.500 13.47 0.00 0.00 2.74
579 580 8.839343 TCTAAGTCAATTGGCATAACATGTATG 58.161 33.333 13.47 4.94 0.00 2.39
580 581 8.840321 GTCTAAGTCAATTGGCATAACATGTAT 58.160 33.333 13.47 0.00 0.00 2.29
581 582 8.046708 AGTCTAAGTCAATTGGCATAACATGTA 58.953 33.333 13.47 0.00 0.00 2.29
582 583 6.886459 AGTCTAAGTCAATTGGCATAACATGT 59.114 34.615 13.47 0.00 0.00 3.21
583 584 7.325660 AGTCTAAGTCAATTGGCATAACATG 57.674 36.000 13.47 0.00 0.00 3.21
584 585 7.944729 AAGTCTAAGTCAATTGGCATAACAT 57.055 32.000 13.47 0.00 0.00 2.71
585 586 8.100791 ACTAAGTCTAAGTCAATTGGCATAACA 58.899 33.333 13.47 0.00 0.00 2.41
586 587 8.494016 ACTAAGTCTAAGTCAATTGGCATAAC 57.506 34.615 13.47 4.92 0.00 1.89
589 590 9.167311 CTTAACTAAGTCTAAGTCAATTGGCAT 57.833 33.333 13.47 2.32 0.00 4.40
590 591 8.154856 ACTTAACTAAGTCTAAGTCAATTGGCA 58.845 33.333 13.47 0.00 42.52 4.92
591 592 8.549338 ACTTAACTAAGTCTAAGTCAATTGGC 57.451 34.615 0.50 0.50 42.52 4.52
605 606 6.334102 CAGTGGACTGAGACTTAACTAAGT 57.666 41.667 0.04 1.72 46.19 2.24
619 620 0.820871 GGCTAGGTCTCAGTGGACTG 59.179 60.000 0.00 0.00 45.08 3.51
620 621 0.409876 TGGCTAGGTCTCAGTGGACT 59.590 55.000 10.38 0.00 36.55 3.85
621 622 0.533032 GTGGCTAGGTCTCAGTGGAC 59.467 60.000 0.00 3.83 35.66 4.02
622 623 0.114364 TGTGGCTAGGTCTCAGTGGA 59.886 55.000 0.00 0.00 0.00 4.02
623 624 0.247736 GTGTGGCTAGGTCTCAGTGG 59.752 60.000 0.00 0.00 0.00 4.00
624 625 0.247736 GGTGTGGCTAGGTCTCAGTG 59.752 60.000 0.00 0.00 0.00 3.66
625 626 0.905337 GGGTGTGGCTAGGTCTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
626 627 0.616111 AGGGTGTGGCTAGGTCTCAG 60.616 60.000 0.00 0.00 0.00 3.35
627 628 0.178903 AAGGGTGTGGCTAGGTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
628 629 1.481363 GTAAGGGTGTGGCTAGGTCTC 59.519 57.143 0.00 0.00 0.00 3.36
629 630 1.569653 GTAAGGGTGTGGCTAGGTCT 58.430 55.000 0.00 0.00 0.00 3.85
630 631 0.175073 CGTAAGGGTGTGGCTAGGTC 59.825 60.000 0.00 0.00 0.00 3.85
631 632 0.543646 ACGTAAGGGTGTGGCTAGGT 60.544 55.000 0.00 0.00 46.39 3.08
632 633 1.477553 TACGTAAGGGTGTGGCTAGG 58.522 55.000 0.00 0.00 46.39 3.02
633 634 2.494870 ACTTACGTAAGGGTGTGGCTAG 59.505 50.000 32.63 10.08 46.39 3.42
634 635 2.493278 GACTTACGTAAGGGTGTGGCTA 59.507 50.000 32.63 0.00 46.39 3.93
635 636 1.274447 GACTTACGTAAGGGTGTGGCT 59.726 52.381 32.63 14.07 46.39 4.75
636 637 1.001181 TGACTTACGTAAGGGTGTGGC 59.999 52.381 32.63 13.51 46.39 5.01
637 638 2.298163 AGTGACTTACGTAAGGGTGTGG 59.702 50.000 32.63 12.54 46.39 4.17
638 639 3.655276 AGTGACTTACGTAAGGGTGTG 57.345 47.619 32.63 13.20 46.39 3.82
639 640 4.099881 TCAAAGTGACTTACGTAAGGGTGT 59.900 41.667 32.63 17.12 46.39 4.16
640 641 4.624015 TCAAAGTGACTTACGTAAGGGTG 58.376 43.478 32.63 21.18 46.39 4.61
641 642 4.586001 TCTCAAAGTGACTTACGTAAGGGT 59.414 41.667 32.63 18.13 46.39 4.34
642 643 4.922103 GTCTCAAAGTGACTTACGTAAGGG 59.078 45.833 32.63 15.20 46.39 3.95
643 644 4.615961 CGTCTCAAAGTGACTTACGTAAGG 59.384 45.833 32.63 18.25 37.62 2.69
644 645 5.210715 ACGTCTCAAAGTGACTTACGTAAG 58.789 41.667 29.27 29.27 35.07 2.34
648 649 2.978489 GGACGTCTCAAAGTGACTTACG 59.022 50.000 16.46 14.62 31.94 3.18
650 651 3.058432 CGAGGACGTCTCAAAGTGACTTA 60.058 47.826 16.46 0.00 42.55 2.24
658 659 0.039437 GCACTCGAGGACGTCTCAAA 60.039 55.000 18.41 0.00 42.55 2.69
669 670 4.159857 GTGTACTTGACTTAGCACTCGAG 58.840 47.826 11.84 11.84 0.00 4.04
672 673 5.047847 TGTTGTGTACTTGACTTAGCACTC 58.952 41.667 0.00 0.00 0.00 3.51
695 696 4.698304 CGGAGAAGACTAGACTCTCAAGTT 59.302 45.833 16.71 0.00 35.28 2.66
743 744 2.450476 GGCTGTCATTCTCCAAACCAT 58.550 47.619 0.00 0.00 0.00 3.55
847 848 0.552848 AAGGCATGGATGGAACGGAT 59.447 50.000 0.00 0.00 0.00 4.18
851 852 1.135721 GCTGAAAGGCATGGATGGAAC 59.864 52.381 0.00 0.00 0.00 3.62
966 972 2.649331 TTAACGGGAAAGCTCTCTCG 57.351 50.000 8.03 8.03 0.00 4.04
980 986 4.087510 TGGAGTGACGTGACTATTAACG 57.912 45.455 7.92 0.00 45.15 3.18
981 987 5.572126 GTCTTGGAGTGACGTGACTATTAAC 59.428 44.000 7.92 0.00 0.00 2.01
983 989 4.763279 TGTCTTGGAGTGACGTGACTATTA 59.237 41.667 7.92 0.00 37.26 0.98
985 991 3.154710 TGTCTTGGAGTGACGTGACTAT 58.845 45.455 7.92 0.00 37.26 2.12
986 992 2.552743 CTGTCTTGGAGTGACGTGACTA 59.447 50.000 7.92 0.00 37.26 2.59
987 993 1.338337 CTGTCTTGGAGTGACGTGACT 59.662 52.381 7.60 7.60 37.26 3.41
988 994 1.337071 TCTGTCTTGGAGTGACGTGAC 59.663 52.381 0.00 0.00 37.26 3.67
999 1005 3.681897 CGAATCCTCTGTTTCTGTCTTGG 59.318 47.826 0.00 0.00 0.00 3.61
1006 1012 0.608640 ACCGCGAATCCTCTGTTTCT 59.391 50.000 8.23 0.00 0.00 2.52
1007 1013 1.439679 AACCGCGAATCCTCTGTTTC 58.560 50.000 8.23 0.00 0.00 2.78
1009 1015 2.289195 TGTAAACCGCGAATCCTCTGTT 60.289 45.455 8.23 0.00 0.00 3.16
1010 1016 1.274167 TGTAAACCGCGAATCCTCTGT 59.726 47.619 8.23 0.00 0.00 3.41
1011 1017 2.004583 TGTAAACCGCGAATCCTCTG 57.995 50.000 8.23 0.00 0.00 3.35
1012 1018 2.754946 TTGTAAACCGCGAATCCTCT 57.245 45.000 8.23 0.00 0.00 3.69
1013 1019 2.287103 GGATTGTAAACCGCGAATCCTC 59.713 50.000 21.39 4.52 40.46 3.71
1039 1185 6.830873 AGTAGTACTACTTGATTGGTTCGT 57.169 37.500 26.61 3.55 43.35 3.85
1055 1201 3.119849 TCGGCGTCTTTGGTAAGTAGTAC 60.120 47.826 6.85 0.00 32.98 2.73
1057 1203 1.888512 TCGGCGTCTTTGGTAAGTAGT 59.111 47.619 6.85 0.00 32.98 2.73
1798 1977 5.324409 AGGTGCTCTTTGGATGTCATTTTA 58.676 37.500 0.00 0.00 0.00 1.52
1947 2127 6.703165 AGTGTATGTGCATATGTATGAGTGTG 59.297 38.462 6.16 0.00 35.75 3.82
2017 2197 4.099881 ACCTGCATGAGACATGTTTTTGTT 59.900 37.500 0.00 0.00 0.00 2.83
2135 2315 2.052690 CCACGGTCGAGAGGTCCAT 61.053 63.158 0.00 0.00 0.00 3.41
2196 2382 0.535102 AAAGTGGCGTGTGAAGAGGG 60.535 55.000 0.00 0.00 0.00 4.30
2397 2583 1.076923 ACCTCCGCGTACCTGAGAT 60.077 57.895 4.92 0.00 0.00 2.75
2419 2605 1.661463 ATGCTTTCTCCCAGTCCTCA 58.339 50.000 0.00 0.00 0.00 3.86
2467 2653 2.823154 CCCCTTGGTCGCTTGAAATAAA 59.177 45.455 0.00 0.00 0.00 1.40
2582 2774 0.671472 TGCCTTGACTCATGCGACAG 60.671 55.000 0.00 0.00 0.00 3.51
2715 2907 3.446873 CAGGCTACCATTTGGCATGTAAA 59.553 43.478 0.00 0.00 39.32 2.01
2923 3458 1.337728 GGTTGGCCTTGCATTTGGTAC 60.338 52.381 3.32 0.00 0.00 3.34
3081 3616 2.094494 AGAAACGACACTCATGCTCGAT 60.094 45.455 8.35 0.00 35.05 3.59
3112 3647 2.408565 TGAACCTTGTCACCTTCCTCT 58.591 47.619 0.00 0.00 0.00 3.69
3498 4038 3.561310 TGAGTGTCATGTTTGAGCACTTC 59.439 43.478 10.39 6.79 40.80 3.01
3572 4403 0.106419 TTGTGGGGTTTGGGTGTCTC 60.106 55.000 0.00 0.00 0.00 3.36
3701 4532 2.022129 CGCGTGCGTCCTTCTCTTT 61.022 57.895 6.00 0.00 34.35 2.52
3795 4626 0.254178 AGTGAGAAAGCATCGCCCAT 59.746 50.000 0.00 0.00 0.00 4.00
4066 5076 7.828508 ATGTGGATTTAGCATATGTGTGATT 57.171 32.000 4.29 0.00 0.00 2.57
4094 7308 9.981460 ACTTTGGATCTTTGTATCTCCTTTATT 57.019 29.630 0.00 0.00 0.00 1.40
4104 7318 9.349713 TCTTGTGTTAACTTTGGATCTTTGTAT 57.650 29.630 7.22 0.00 0.00 2.29
4142 7356 4.796038 CAAGGATTGGATGAACTTGCTT 57.204 40.909 0.00 0.00 43.94 3.91
4155 7369 2.433970 GACCTCTCTCCTCCAAGGATTG 59.566 54.545 0.00 0.00 44.81 2.67
4210 7424 2.243221 AGATCCCCCAAGTGGATTCAAG 59.757 50.000 0.00 0.00 42.69 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.