Multiple sequence alignment - TraesCS2D01G137100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G137100 chr2D 100.000 6156 0 0 1001 7156 80734067 80727912 0.000000e+00 11369.0
1 TraesCS2D01G137100 chr2D 100.000 777 0 0 1 777 80735067 80734291 0.000000e+00 1435.0
2 TraesCS2D01G137100 chr2D 87.245 196 7 6 1 179 636428755 636428561 2.620000e-49 207.0
3 TraesCS2D01G137100 chr2D 87.845 181 11 6 1 172 554852287 554852109 1.220000e-47 202.0
4 TraesCS2D01G137100 chr2D 85.714 182 17 4 4 176 453747898 453747717 4.410000e-42 183.0
5 TraesCS2D01G137100 chr2D 96.512 86 3 0 5259 5344 636386032 636385947 7.480000e-30 143.0
6 TraesCS2D01G137100 chr2D 95.455 88 4 0 5257 5344 270850254 270850341 2.690000e-29 141.0
7 TraesCS2D01G137100 chr2D 100.000 32 0 0 1844 1875 575354627 575354596 7.750000e-05 60.2
8 TraesCS2D01G137100 chr2B 94.916 2262 79 12 2931 5161 132343964 132341708 0.000000e+00 3507.0
9 TraesCS2D01G137100 chr2B 92.078 1338 64 20 5742 7065 132340911 132339602 0.000000e+00 1845.0
10 TraesCS2D01G137100 chr2B 93.557 776 30 7 2173 2948 132344862 132344107 0.000000e+00 1138.0
11 TraesCS2D01G137100 chr2B 91.315 852 43 11 1001 1823 132345958 132345109 0.000000e+00 1134.0
12 TraesCS2D01G137100 chr2B 94.541 403 20 1 5341 5743 132341419 132341019 7.880000e-174 621.0
13 TraesCS2D01G137100 chr2B 93.487 261 6 6 1874 2133 132345110 132344860 1.880000e-100 377.0
14 TraesCS2D01G137100 chr2B 82.584 356 34 16 196 543 132346609 132346274 9.080000e-74 289.0
15 TraesCS2D01G137100 chr2B 87.097 186 13 5 1 176 72191181 72191365 4.380000e-47 200.0
16 TraesCS2D01G137100 chr2B 94.681 94 4 1 5255 5347 601199827 601199920 2.080000e-30 145.0
17 TraesCS2D01G137100 chr2B 90.722 97 7 2 5253 5348 225436412 225436317 2.100000e-25 128.0
18 TraesCS2D01G137100 chr2B 88.298 94 5 3 672 759 132346141 132346048 2.730000e-19 108.0
19 TraesCS2D01G137100 chr2B 92.308 52 3 1 7080 7130 132339566 132339515 9.960000e-09 73.1
20 TraesCS2D01G137100 chr2B 97.368 38 0 1 1843 1879 182026585 182026622 5.990000e-06 63.9
21 TraesCS2D01G137100 chr2B 100.000 32 0 0 1844 1875 457345779 457345810 7.750000e-05 60.2
22 TraesCS2D01G137100 chr2A 90.227 1893 116 29 2620 4469 81097603 81095737 0.000000e+00 2407.0
23 TraesCS2D01G137100 chr2A 87.386 880 52 23 1001 1823 81099916 81099039 0.000000e+00 955.0
24 TraesCS2D01G137100 chr2A 90.657 685 50 6 4470 5141 81095700 81095017 0.000000e+00 898.0
25 TraesCS2D01G137100 chr2A 85.181 911 63 27 6287 7156 81091008 81090129 0.000000e+00 869.0
26 TraesCS2D01G137100 chr2A 93.307 508 17 7 5742 6248 81091620 81091129 0.000000e+00 734.0
27 TraesCS2D01G137100 chr2A 89.435 407 39 3 1874 2279 81099040 81098637 1.780000e-140 510.0
28 TraesCS2D01G137100 chr2A 86.585 328 25 1 2271 2598 81098001 81097693 1.910000e-90 344.0
29 TraesCS2D01G137100 chr2A 97.041 169 5 0 5575 5743 81091869 81091701 1.170000e-72 285.0
30 TraesCS2D01G137100 chr2A 85.660 265 28 5 194 457 81101773 81101518 3.290000e-68 270.0
31 TraesCS2D01G137100 chr2A 94.215 121 7 0 5141 5261 81092076 81091956 1.230000e-42 185.0
32 TraesCS2D01G137100 chr2A 77.885 312 41 19 455 753 81100322 81100026 1.230000e-37 169.0
33 TraesCS2D01G137100 chr2A 94.681 94 5 0 5341 5434 81091959 81091866 5.780000e-31 147.0
34 TraesCS2D01G137100 chr2A 95.455 88 4 0 5257 5344 16862948 16862861 2.690000e-29 141.0
35 TraesCS2D01G137100 chr1B 83.333 780 96 21 1055 1806 250524865 250524092 0.000000e+00 689.0
36 TraesCS2D01G137100 chr1B 82.097 782 107 27 1052 1806 369820941 369821716 7.830000e-179 638.0
37 TraesCS2D01G137100 chr7B 82.564 780 102 21 1055 1806 235731654 235730881 0.000000e+00 656.0
38 TraesCS2D01G137100 chr7A 82.503 783 103 21 1052 1806 713945731 713946507 0.000000e+00 656.0
39 TraesCS2D01G137100 chr7A 95.402 87 4 0 5258 5344 136806192 136806106 9.680000e-29 139.0
40 TraesCS2D01G137100 chr1A 82.120 783 107 20 1055 1810 5839695 5838919 2.180000e-179 640.0
41 TraesCS2D01G137100 chr3A 81.609 783 108 31 1052 1806 126736511 126737285 3.670000e-172 616.0
42 TraesCS2D01G137100 chr5B 89.655 174 11 4 1 172 330427996 330428164 1.560000e-51 215.0
43 TraesCS2D01G137100 chr5B 88.764 178 13 4 1 172 663987269 663987445 2.020000e-50 211.0
44 TraesCS2D01G137100 chr5B 85.870 184 18 7 1 177 302857802 302857984 9.480000e-44 189.0
45 TraesCS2D01G137100 chr5B 91.228 57 4 1 1822 1877 697279649 697279593 7.700000e-10 76.8
46 TraesCS2D01G137100 chr6D 86.911 191 7 7 1 174 406227553 406227364 1.570000e-46 198.0
47 TraesCS2D01G137100 chr6D 81.143 175 30 3 185 359 433268227 433268056 3.480000e-28 137.0
48 TraesCS2D01G137100 chr6D 97.222 36 0 1 1844 1878 157587462 157587497 7.750000e-05 60.2
49 TraesCS2D01G137100 chr4B 87.805 164 9 6 1 155 414267339 414267500 1.590000e-41 182.0
50 TraesCS2D01G137100 chr4B 80.000 85 14 2 219 303 381379043 381379124 7.750000e-05 60.2
51 TraesCS2D01G137100 chr4B 100.000 32 0 0 1844 1875 504081700 504081731 7.750000e-05 60.2
52 TraesCS2D01G137100 chr6B 80.829 193 33 4 185 377 653717960 653717772 1.610000e-31 148.0
53 TraesCS2D01G137100 chr6B 79.897 194 34 5 185 377 653791092 653790903 3.480000e-28 137.0
54 TraesCS2D01G137100 chr6B 100.000 32 0 0 1844 1875 644937099 644937130 7.750000e-05 60.2
55 TraesCS2D01G137100 chrUn 93.000 100 6 1 5246 5344 31861309 31861210 2.080000e-30 145.0
56 TraesCS2D01G137100 chr4D 96.471 85 3 0 5260 5344 434161698 434161614 2.690000e-29 141.0
57 TraesCS2D01G137100 chr7D 95.294 85 4 0 5260 5344 493547895 493547811 1.250000e-27 135.0
58 TraesCS2D01G137100 chr1D 77.778 162 30 6 211 371 481406363 481406207 2.130000e-15 95.3
59 TraesCS2D01G137100 chr3B 100.000 32 0 0 1844 1875 793061223 793061254 7.750000e-05 60.2
60 TraesCS2D01G137100 chr3D 94.737 38 1 1 1840 1876 445019095 445019132 2.790000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G137100 chr2D 80727912 80735067 7155 True 6402.000000 11369 100.000000 1 7156 2 chr2D.!!$R6 7155
1 TraesCS2D01G137100 chr2B 132339515 132346609 7094 True 1010.233333 3507 91.453778 196 7130 9 chr2B.!!$R2 6934
2 TraesCS2D01G137100 chr2A 81090129 81101773 11644 True 647.750000 2407 89.355000 194 7156 12 chr2A.!!$R2 6962
3 TraesCS2D01G137100 chr1B 250524092 250524865 773 True 689.000000 689 83.333000 1055 1806 1 chr1B.!!$R1 751
4 TraesCS2D01G137100 chr1B 369820941 369821716 775 False 638.000000 638 82.097000 1052 1806 1 chr1B.!!$F1 754
5 TraesCS2D01G137100 chr7B 235730881 235731654 773 True 656.000000 656 82.564000 1055 1806 1 chr7B.!!$R1 751
6 TraesCS2D01G137100 chr7A 713945731 713946507 776 False 656.000000 656 82.503000 1052 1806 1 chr7A.!!$F1 754
7 TraesCS2D01G137100 chr1A 5838919 5839695 776 True 640.000000 640 82.120000 1055 1810 1 chr1A.!!$R1 755
8 TraesCS2D01G137100 chr3A 126736511 126737285 774 False 616.000000 616 81.609000 1052 1806 1 chr3A.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.101759 GCACGACCCGACTGCTAATA 59.898 55.000 0.00 0.0 0.00 0.98 F
518 1732 0.385974 GCAGCTTGCAAGGTTGTACG 60.386 55.000 27.77 17.1 44.26 3.67 F
613 1868 0.601576 CGAAACCGGATCACACACCA 60.602 55.000 9.46 0.0 0.00 4.17 F
754 2038 0.601841 ACGGTAGGTGGAAGCAAACG 60.602 55.000 0.00 0.0 36.26 3.60 F
758 2058 0.669318 TAGGTGGAAGCAAACGAGCG 60.669 55.000 0.00 0.0 40.15 5.03 F
1838 3203 0.790993 ACTACTCCCTCTGTCCCCAA 59.209 55.000 0.00 0.0 0.00 4.12 F
3001 5241 0.890996 GTGCCCTTTGAGTGGACCAG 60.891 60.000 0.00 0.0 0.00 4.00 F
3052 5303 2.085320 ACACCACACTTACGCACAAAA 58.915 42.857 0.00 0.0 0.00 2.44 F
3322 5573 2.212812 TGGCTGATTGGTGTGCATTA 57.787 45.000 0.00 0.0 0.00 1.90 F
5071 7408 1.403249 GCTTGCCATGAACCATGTGAC 60.403 52.381 0.00 0.0 39.94 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 2840 0.179250 CACTACATCACGCACGTTGC 60.179 55.000 0.0 0.0 40.69 4.17 R
1933 3300 0.320771 GGTGAACAGACAGCATCGGT 60.321 55.000 0.0 0.0 37.33 4.69 R
2171 3538 1.609208 TCCTGGCTCTGCTTTGAAAC 58.391 50.000 0.0 0.0 0.00 2.78 R
2432 4443 1.915141 ATGAAAGCCAACAGGACCAG 58.085 50.000 0.0 0.0 0.00 4.00 R
2695 4775 5.662211 AACGTGTATGTTGTGTTAAGGAC 57.338 39.130 0.0 0.0 0.00 3.85 R
3053 5304 0.400594 GCTGTGTAAACCACCCTCCT 59.599 55.000 0.0 0.0 43.85 3.69 R
4470 6756 1.377725 AGCCAGTATGTGCCAGCAC 60.378 57.895 15.8 15.8 46.33 4.40 R
4520 6842 2.664402 AGACAAGGTTGCTGATGGTT 57.336 45.000 0.0 0.0 0.00 3.67 R
5250 10721 0.531200 CGGAGGGAGTACTTGTGGAC 59.469 60.000 0.0 0.0 0.00 4.02 R
6934 12670 0.038744 AGTGGAGGGAACTTGGCATG 59.961 55.000 0.0 0.0 44.43 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.160646 GGGTTGTTTCCCCTCTCCA 58.839 57.895 0.00 0.00 41.54 3.86
21 22 0.481128 GGGTTGTTTCCCCTCTCCAA 59.519 55.000 0.00 0.00 41.54 3.53
22 23 1.617322 GGTTGTTTCCCCTCTCCAAC 58.383 55.000 0.00 0.00 35.75 3.77
23 24 1.617322 GTTGTTTCCCCTCTCCAACC 58.383 55.000 0.00 0.00 31.50 3.77
24 25 0.481128 TTGTTTCCCCTCTCCAACCC 59.519 55.000 0.00 0.00 0.00 4.11
25 26 0.402861 TGTTTCCCCTCTCCAACCCT 60.403 55.000 0.00 0.00 0.00 4.34
26 27 0.328592 GTTTCCCCTCTCCAACCCTC 59.671 60.000 0.00 0.00 0.00 4.30
27 28 0.104144 TTTCCCCTCTCCAACCCTCA 60.104 55.000 0.00 0.00 0.00 3.86
28 29 0.840722 TTCCCCTCTCCAACCCTCAC 60.841 60.000 0.00 0.00 0.00 3.51
29 30 1.229658 CCCCTCTCCAACCCTCACT 60.230 63.158 0.00 0.00 0.00 3.41
30 31 0.842467 CCCCTCTCCAACCCTCACTT 60.842 60.000 0.00 0.00 0.00 3.16
31 32 1.068121 CCCTCTCCAACCCTCACTTT 58.932 55.000 0.00 0.00 0.00 2.66
32 33 1.425448 CCCTCTCCAACCCTCACTTTT 59.575 52.381 0.00 0.00 0.00 2.27
33 34 2.642807 CCCTCTCCAACCCTCACTTTTA 59.357 50.000 0.00 0.00 0.00 1.52
34 35 3.307762 CCCTCTCCAACCCTCACTTTTAG 60.308 52.174 0.00 0.00 0.00 1.85
35 36 3.583086 CCTCTCCAACCCTCACTTTTAGA 59.417 47.826 0.00 0.00 0.00 2.10
36 37 4.323104 CCTCTCCAACCCTCACTTTTAGAG 60.323 50.000 0.00 0.00 0.00 2.43
42 43 2.409948 CCTCACTTTTAGAGGCTGGG 57.590 55.000 0.00 0.00 45.51 4.45
43 44 1.909302 CCTCACTTTTAGAGGCTGGGA 59.091 52.381 0.00 0.00 45.51 4.37
44 45 2.093235 CCTCACTTTTAGAGGCTGGGAG 60.093 54.545 0.00 0.00 45.51 4.30
45 46 2.834549 CTCACTTTTAGAGGCTGGGAGA 59.165 50.000 0.00 0.00 0.00 3.71
46 47 2.834549 TCACTTTTAGAGGCTGGGAGAG 59.165 50.000 0.00 0.00 0.00 3.20
62 63 4.660938 AGCAACCCGGGCTCCAAC 62.661 66.667 24.08 4.17 36.81 3.77
75 76 4.617253 GGCTCCAACCCTTAAAATTGTT 57.383 40.909 0.00 0.00 0.00 2.83
76 77 4.968259 GGCTCCAACCCTTAAAATTGTTT 58.032 39.130 0.00 0.00 0.00 2.83
77 78 6.104146 GGCTCCAACCCTTAAAATTGTTTA 57.896 37.500 0.00 0.00 0.00 2.01
78 79 6.163476 GGCTCCAACCCTTAAAATTGTTTAG 58.837 40.000 0.00 0.00 30.92 1.85
79 80 6.163476 GCTCCAACCCTTAAAATTGTTTAGG 58.837 40.000 0.00 0.00 30.92 2.69
80 81 6.673839 TCCAACCCTTAAAATTGTTTAGGG 57.326 37.500 8.82 8.82 43.08 3.53
92 93 8.688222 AAAATTGTTTAGGGGTTTATATGGGT 57.312 30.769 0.00 0.00 0.00 4.51
93 94 8.688222 AAATTGTTTAGGGGTTTATATGGGTT 57.312 30.769 0.00 0.00 0.00 4.11
94 95 7.907841 ATTGTTTAGGGGTTTATATGGGTTC 57.092 36.000 0.00 0.00 0.00 3.62
95 96 6.661740 TGTTTAGGGGTTTATATGGGTTCT 57.338 37.500 0.00 0.00 0.00 3.01
96 97 7.768324 TGTTTAGGGGTTTATATGGGTTCTA 57.232 36.000 0.00 0.00 0.00 2.10
97 98 7.808218 TGTTTAGGGGTTTATATGGGTTCTAG 58.192 38.462 0.00 0.00 0.00 2.43
98 99 7.406739 TGTTTAGGGGTTTATATGGGTTCTAGT 59.593 37.037 0.00 0.00 0.00 2.57
99 100 7.622502 TTAGGGGTTTATATGGGTTCTAGTC 57.377 40.000 0.00 0.00 0.00 2.59
100 101 5.800653 AGGGGTTTATATGGGTTCTAGTCT 58.199 41.667 0.00 0.00 0.00 3.24
101 102 6.218053 AGGGGTTTATATGGGTTCTAGTCTT 58.782 40.000 0.00 0.00 0.00 3.01
102 103 6.681541 AGGGGTTTATATGGGTTCTAGTCTTT 59.318 38.462 0.00 0.00 0.00 2.52
103 104 6.771267 GGGGTTTATATGGGTTCTAGTCTTTG 59.229 42.308 0.00 0.00 0.00 2.77
104 105 6.262496 GGGTTTATATGGGTTCTAGTCTTTGC 59.738 42.308 0.00 0.00 0.00 3.68
105 106 7.054751 GGTTTATATGGGTTCTAGTCTTTGCT 58.945 38.462 0.00 0.00 0.00 3.91
106 107 7.556635 GGTTTATATGGGTTCTAGTCTTTGCTT 59.443 37.037 0.00 0.00 0.00 3.91
107 108 8.957466 GTTTATATGGGTTCTAGTCTTTGCTTT 58.043 33.333 0.00 0.00 0.00 3.51
108 109 9.528489 TTTATATGGGTTCTAGTCTTTGCTTTT 57.472 29.630 0.00 0.00 0.00 2.27
109 110 9.528489 TTATATGGGTTCTAGTCTTTGCTTTTT 57.472 29.630 0.00 0.00 0.00 1.94
147 148 3.620427 AAAAAGCGGTTTTTGAGGGTT 57.380 38.095 30.89 10.60 42.97 4.11
148 149 3.620427 AAAAGCGGTTTTTGAGGGTTT 57.380 38.095 19.03 0.00 37.59 3.27
149 150 2.595124 AAGCGGTTTTTGAGGGTTTG 57.405 45.000 0.00 0.00 0.00 2.93
150 151 1.770294 AGCGGTTTTTGAGGGTTTGA 58.230 45.000 0.00 0.00 0.00 2.69
151 152 1.681264 AGCGGTTTTTGAGGGTTTGAG 59.319 47.619 0.00 0.00 0.00 3.02
152 153 1.269569 GCGGTTTTTGAGGGTTTGAGG 60.270 52.381 0.00 0.00 0.00 3.86
153 154 1.339929 CGGTTTTTGAGGGTTTGAGGG 59.660 52.381 0.00 0.00 0.00 4.30
154 155 2.394632 GGTTTTTGAGGGTTTGAGGGT 58.605 47.619 0.00 0.00 0.00 4.34
155 156 3.568443 GGTTTTTGAGGGTTTGAGGGTA 58.432 45.455 0.00 0.00 0.00 3.69
156 157 3.319972 GGTTTTTGAGGGTTTGAGGGTAC 59.680 47.826 0.00 0.00 0.00 3.34
157 158 4.212716 GTTTTTGAGGGTTTGAGGGTACT 58.787 43.478 0.00 0.00 0.00 2.73
158 159 5.379187 GTTTTTGAGGGTTTGAGGGTACTA 58.621 41.667 0.00 0.00 0.00 1.82
159 160 4.628963 TTTGAGGGTTTGAGGGTACTAC 57.371 45.455 0.00 0.00 0.00 2.73
160 161 3.555117 TGAGGGTTTGAGGGTACTACT 57.445 47.619 0.00 0.00 0.00 2.57
161 162 4.680278 TGAGGGTTTGAGGGTACTACTA 57.320 45.455 0.00 0.00 0.00 1.82
162 163 4.347607 TGAGGGTTTGAGGGTACTACTAC 58.652 47.826 0.00 0.00 0.00 2.73
163 164 4.045079 TGAGGGTTTGAGGGTACTACTACT 59.955 45.833 0.00 0.00 0.00 2.57
164 165 4.351127 AGGGTTTGAGGGTACTACTACTG 58.649 47.826 0.00 0.00 0.00 2.74
165 166 4.045079 AGGGTTTGAGGGTACTACTACTGA 59.955 45.833 0.00 0.00 0.00 3.41
166 167 4.961099 GGGTTTGAGGGTACTACTACTGAT 59.039 45.833 0.00 0.00 0.00 2.90
167 168 5.163437 GGGTTTGAGGGTACTACTACTGATG 60.163 48.000 0.00 0.00 0.00 3.07
168 169 5.349809 GTTTGAGGGTACTACTACTGATGC 58.650 45.833 0.00 0.00 0.00 3.91
169 170 4.521536 TGAGGGTACTACTACTGATGCT 57.478 45.455 0.00 0.00 0.00 3.79
170 171 4.462133 TGAGGGTACTACTACTGATGCTC 58.538 47.826 0.00 0.00 0.00 4.26
171 172 4.166337 TGAGGGTACTACTACTGATGCTCT 59.834 45.833 0.00 0.00 0.00 4.09
172 173 5.132043 AGGGTACTACTACTGATGCTCTT 57.868 43.478 0.00 0.00 0.00 2.85
173 174 6.126565 TGAGGGTACTACTACTGATGCTCTTA 60.127 42.308 0.00 0.00 0.00 2.10
174 175 6.300703 AGGGTACTACTACTGATGCTCTTAG 58.699 44.000 0.00 0.00 0.00 2.18
175 176 5.048573 GGGTACTACTACTGATGCTCTTAGC 60.049 48.000 0.00 0.00 42.82 3.09
184 185 2.882876 GCTCTTAGCACGACCCGA 59.117 61.111 0.00 0.00 41.89 5.14
185 186 1.516603 GCTCTTAGCACGACCCGAC 60.517 63.158 0.00 0.00 41.89 4.79
186 187 1.935327 GCTCTTAGCACGACCCGACT 61.935 60.000 0.00 0.00 41.89 4.18
187 188 0.179161 CTCTTAGCACGACCCGACTG 60.179 60.000 0.00 0.00 0.00 3.51
188 189 1.805945 CTTAGCACGACCCGACTGC 60.806 63.158 0.00 0.00 0.00 4.40
189 190 2.214181 CTTAGCACGACCCGACTGCT 62.214 60.000 8.94 8.94 43.67 4.24
190 191 0.961857 TTAGCACGACCCGACTGCTA 60.962 55.000 7.33 7.33 41.52 3.49
191 192 0.961857 TAGCACGACCCGACTGCTAA 60.962 55.000 8.54 0.00 39.90 3.09
192 193 1.153628 GCACGACCCGACTGCTAAT 60.154 57.895 0.00 0.00 0.00 1.73
193 194 0.101759 GCACGACCCGACTGCTAATA 59.898 55.000 0.00 0.00 0.00 0.98
194 195 1.864435 GCACGACCCGACTGCTAATAG 60.864 57.143 0.00 0.00 0.00 1.73
209 210 1.639722 AATAGGTTTTGCCCCGCTTT 58.360 45.000 0.00 0.00 38.26 3.51
213 214 0.892063 GGTTTTGCCCCGCTTTGATA 59.108 50.000 0.00 0.00 0.00 2.15
221 222 1.762957 CCCCGCTTTGATAAGAGAGGA 59.237 52.381 0.00 0.00 31.98 3.71
230 231 2.550180 TGATAAGAGAGGAGCGATGACG 59.450 50.000 0.00 0.00 42.93 4.35
231 232 2.327200 TAAGAGAGGAGCGATGACGA 57.673 50.000 0.00 0.00 42.66 4.20
305 308 3.674753 CGGACCTTCATGCAATTTTTGTC 59.325 43.478 0.00 0.00 0.00 3.18
327 330 4.582656 TCATTTTTGGTGTTCCTGGTACTG 59.417 41.667 5.04 0.00 34.23 2.74
347 350 7.279536 GGTACTGCCATGACATATGATGAATAG 59.720 40.741 10.38 5.61 37.17 1.73
400 414 1.725641 TGCGACATGTCAACAGATCC 58.274 50.000 24.93 3.80 0.00 3.36
402 416 2.289631 TGCGACATGTCAACAGATCCTT 60.290 45.455 24.93 0.00 0.00 3.36
403 417 2.744202 GCGACATGTCAACAGATCCTTT 59.256 45.455 24.93 0.00 0.00 3.11
404 418 3.181516 GCGACATGTCAACAGATCCTTTC 60.182 47.826 24.93 0.00 0.00 2.62
405 419 3.372206 CGACATGTCAACAGATCCTTTCC 59.628 47.826 24.93 0.00 0.00 3.13
406 420 4.326826 GACATGTCAACAGATCCTTTCCA 58.673 43.478 21.07 0.00 0.00 3.53
407 421 4.927049 ACATGTCAACAGATCCTTTCCAT 58.073 39.130 0.00 0.00 0.00 3.41
408 422 6.065976 ACATGTCAACAGATCCTTTCCATA 57.934 37.500 0.00 0.00 0.00 2.74
409 423 6.118170 ACATGTCAACAGATCCTTTCCATAG 58.882 40.000 0.00 0.00 0.00 2.23
410 424 5.762179 TGTCAACAGATCCTTTCCATAGT 57.238 39.130 0.00 0.00 0.00 2.12
411 425 6.867519 TGTCAACAGATCCTTTCCATAGTA 57.132 37.500 0.00 0.00 0.00 1.82
412 426 7.437713 TGTCAACAGATCCTTTCCATAGTAT 57.562 36.000 0.00 0.00 0.00 2.12
413 427 8.547481 TGTCAACAGATCCTTTCCATAGTATA 57.453 34.615 0.00 0.00 0.00 1.47
414 428 9.159254 TGTCAACAGATCCTTTCCATAGTATAT 57.841 33.333 0.00 0.00 0.00 0.86
477 1691 1.321474 TGGACAAGAAGCAGCTTTGG 58.679 50.000 9.62 4.67 0.00 3.28
518 1732 0.385974 GCAGCTTGCAAGGTTGTACG 60.386 55.000 27.77 17.10 44.26 3.67
519 1733 0.944386 CAGCTTGCAAGGTTGTACGT 59.056 50.000 27.77 0.00 33.87 3.57
520 1734 2.139917 CAGCTTGCAAGGTTGTACGTA 58.860 47.619 27.77 0.00 33.87 3.57
521 1735 2.157668 CAGCTTGCAAGGTTGTACGTAG 59.842 50.000 27.77 10.84 33.87 3.51
523 1737 3.006110 AGCTTGCAAGGTTGTACGTAGTA 59.994 43.478 24.96 0.00 35.89 1.82
612 1867 2.159181 CGAAACCGGATCACACACC 58.841 57.895 9.46 0.00 0.00 4.16
613 1868 0.601576 CGAAACCGGATCACACACCA 60.602 55.000 9.46 0.00 0.00 4.17
614 1869 1.600023 GAAACCGGATCACACACCAA 58.400 50.000 9.46 0.00 0.00 3.67
615 1870 2.159382 GAAACCGGATCACACACCAAT 58.841 47.619 9.46 0.00 0.00 3.16
616 1871 3.340034 GAAACCGGATCACACACCAATA 58.660 45.455 9.46 0.00 0.00 1.90
617 1872 2.396590 ACCGGATCACACACCAATAC 57.603 50.000 9.46 0.00 0.00 1.89
618 1873 1.626321 ACCGGATCACACACCAATACA 59.374 47.619 9.46 0.00 0.00 2.29
619 1874 2.006888 CCGGATCACACACCAATACAC 58.993 52.381 0.00 0.00 0.00 2.90
620 1875 2.006888 CGGATCACACACCAATACACC 58.993 52.381 0.00 0.00 0.00 4.16
621 1876 2.614229 CGGATCACACACCAATACACCA 60.614 50.000 0.00 0.00 0.00 4.17
622 1877 3.620488 GGATCACACACCAATACACCAT 58.380 45.455 0.00 0.00 0.00 3.55
623 1878 3.378112 GGATCACACACCAATACACCATG 59.622 47.826 0.00 0.00 0.00 3.66
624 1879 2.789213 TCACACACCAATACACCATGG 58.211 47.619 11.19 11.19 42.60 3.66
647 1902 2.762459 TGCCTCCCCGCGAAGTAT 60.762 61.111 8.23 0.00 0.00 2.12
651 1906 1.473788 GCCTCCCCGCGAAGTATTAAA 60.474 52.381 8.23 0.00 0.00 1.52
682 1956 1.066587 GGAGAAGAGCACCGGATCG 59.933 63.158 9.46 0.00 33.76 3.69
720 2000 2.602267 ATCCGTCGGTGTGGTGGA 60.602 61.111 11.88 0.00 0.00 4.02
754 2038 0.601841 ACGGTAGGTGGAAGCAAACG 60.602 55.000 0.00 0.00 36.26 3.60
758 2058 0.669318 TAGGTGGAAGCAAACGAGCG 60.669 55.000 0.00 0.00 40.15 5.03
1025 2335 2.123251 TCGGCTCCCCAGATCTCC 60.123 66.667 0.00 0.00 0.00 3.71
1028 2338 3.237741 GCTCCCCAGATCTCCCCG 61.238 72.222 0.00 0.00 0.00 5.73
1450 2793 2.822399 GGACCCTGCTACCGATGG 59.178 66.667 0.00 0.00 0.00 3.51
1482 2840 2.902705 TGTTAGGGCTATACCGCTTG 57.097 50.000 0.00 0.00 40.62 4.01
1487 2845 1.641677 GGCTATACCGCTTGCAACG 59.358 57.895 12.53 12.53 0.00 4.10
1502 2860 1.136690 CAACGTGCGTGATGTAGTGT 58.863 50.000 0.00 0.00 0.00 3.55
1511 2869 1.138883 GATGTAGTGTGGCGCGAGA 59.861 57.895 12.10 0.00 0.00 4.04
1563 2921 2.102252 CTGTCCTGGCTCCTGATTAGAC 59.898 54.545 0.00 0.00 0.00 2.59
1567 2925 2.034812 CCTGGCTCCTGATTAGACGTAC 59.965 54.545 0.00 0.00 0.00 3.67
1665 3028 3.922850 GCTGAAAGTTTCCTAGCAAATGC 59.077 43.478 18.33 0.00 37.58 3.56
1724 3088 6.979238 AGATCGTTAGAAATGTAGGCTTGTAC 59.021 38.462 0.00 0.00 0.00 2.90
1784 3149 8.321353 TGATAGTGTCACCTAATCAGTGAAATT 58.679 33.333 0.00 0.00 45.37 1.82
1834 3199 6.980416 ATGTAAATACTACTCCCTCTGTCC 57.020 41.667 0.00 0.00 0.00 4.02
1835 3200 5.206587 TGTAAATACTACTCCCTCTGTCCC 58.793 45.833 0.00 0.00 0.00 4.46
1836 3201 3.331718 AATACTACTCCCTCTGTCCCC 57.668 52.381 0.00 0.00 0.00 4.81
1837 3202 1.690010 TACTACTCCCTCTGTCCCCA 58.310 55.000 0.00 0.00 0.00 4.96
1838 3203 0.790993 ACTACTCCCTCTGTCCCCAA 59.209 55.000 0.00 0.00 0.00 4.12
1839 3204 1.151413 ACTACTCCCTCTGTCCCCAAA 59.849 52.381 0.00 0.00 0.00 3.28
1840 3205 2.225908 ACTACTCCCTCTGTCCCCAAAT 60.226 50.000 0.00 0.00 0.00 2.32
1841 3206 2.661176 ACTCCCTCTGTCCCCAAATA 57.339 50.000 0.00 0.00 0.00 1.40
1842 3207 3.151542 ACTCCCTCTGTCCCCAAATAT 57.848 47.619 0.00 0.00 0.00 1.28
1843 3208 4.295905 ACTCCCTCTGTCCCCAAATATA 57.704 45.455 0.00 0.00 0.00 0.86
1844 3209 4.641868 ACTCCCTCTGTCCCCAAATATAA 58.358 43.478 0.00 0.00 0.00 0.98
1845 3210 5.043762 ACTCCCTCTGTCCCCAAATATAAA 58.956 41.667 0.00 0.00 0.00 1.40
1846 3211 5.494706 ACTCCCTCTGTCCCCAAATATAAAA 59.505 40.000 0.00 0.00 0.00 1.52
1847 3212 5.762279 TCCCTCTGTCCCCAAATATAAAAC 58.238 41.667 0.00 0.00 0.00 2.43
1848 3213 4.578928 CCCTCTGTCCCCAAATATAAAACG 59.421 45.833 0.00 0.00 0.00 3.60
1849 3214 5.190677 CCTCTGTCCCCAAATATAAAACGT 58.809 41.667 0.00 0.00 0.00 3.99
1850 3215 5.296035 CCTCTGTCCCCAAATATAAAACGTC 59.704 44.000 0.00 0.00 0.00 4.34
1851 3216 6.057321 TCTGTCCCCAAATATAAAACGTCT 57.943 37.500 0.00 0.00 0.00 4.18
1852 3217 6.478129 TCTGTCCCCAAATATAAAACGTCTT 58.522 36.000 0.00 0.00 0.00 3.01
1853 3218 7.622713 TCTGTCCCCAAATATAAAACGTCTTA 58.377 34.615 0.00 0.00 0.00 2.10
1854 3219 8.269317 TCTGTCCCCAAATATAAAACGTCTTAT 58.731 33.333 0.00 0.00 0.00 1.73
1855 3220 9.550406 CTGTCCCCAAATATAAAACGTCTTATA 57.450 33.333 3.91 3.91 0.00 0.98
1870 3235 5.399858 CGTCTTATATTATGTGACGGAGGG 58.600 45.833 17.70 0.42 44.29 4.30
1871 3236 5.182570 CGTCTTATATTATGTGACGGAGGGA 59.817 44.000 17.70 0.00 44.29 4.20
1872 3237 6.622549 GTCTTATATTATGTGACGGAGGGAG 58.377 44.000 0.00 0.00 0.00 4.30
1971 3338 9.209048 TGTTCACCCATCTAGTAAGTATTGTAT 57.791 33.333 0.00 0.00 0.00 2.29
2151 3518 7.279758 CAGTCTTTTTAATGTTTGCCTTTTCCA 59.720 33.333 0.00 0.00 0.00 3.53
2297 4308 2.352388 GCCACTTAATACGGCAGAACA 58.648 47.619 5.34 0.00 45.52 3.18
2318 4329 6.052840 ACATTCTCATGTTATCACATTCGC 57.947 37.500 0.00 0.00 41.16 4.70
2378 4389 5.307716 TCAGATATGATGGCATGTTGGTAGA 59.692 40.000 3.81 0.00 35.94 2.59
2432 4443 7.391148 TTGAGAGGAAAAATATGCAGGTTAC 57.609 36.000 0.00 0.00 0.00 2.50
2605 4616 8.842358 ATCTGTCTCTAAATTTTCCGTGTTAA 57.158 30.769 0.00 0.00 0.00 2.01
2638 4717 9.880157 TTATTGCGACTATAGTTCTAAACCTTT 57.120 29.630 6.88 0.00 0.00 3.11
2695 4775 6.913170 ACTAGATGCCACAGTTTAATGTTTG 58.087 36.000 0.00 0.00 0.00 2.93
2714 4794 6.787225 TGTTTGTCCTTAACACAACATACAC 58.213 36.000 0.00 0.00 37.70 2.90
2919 4999 5.485353 TGAATACAATGTCCTCCACTCTTCT 59.515 40.000 0.00 0.00 0.00 2.85
2970 5210 1.687563 TTCACACTCCTCACTCGTGA 58.312 50.000 0.00 0.00 38.06 4.35
3001 5241 0.890996 GTGCCCTTTGAGTGGACCAG 60.891 60.000 0.00 0.00 0.00 4.00
3052 5303 2.085320 ACACCACACTTACGCACAAAA 58.915 42.857 0.00 0.00 0.00 2.44
3053 5304 2.488545 ACACCACACTTACGCACAAAAA 59.511 40.909 0.00 0.00 0.00 1.94
3054 5305 3.105203 CACCACACTTACGCACAAAAAG 58.895 45.455 0.00 0.00 0.00 2.27
3322 5573 2.212812 TGGCTGATTGGTGTGCATTA 57.787 45.000 0.00 0.00 0.00 1.90
3458 5709 5.586643 GGTAAGGAGGAACTTAATGCTCTTG 59.413 44.000 0.00 0.00 41.55 3.02
3465 5716 7.970614 GGAGGAACTTAATGCTCTTGTAATTTG 59.029 37.037 0.00 0.00 41.55 2.32
3468 5719 9.691362 GGAACTTAATGCTCTTGTAATTTGAAA 57.309 29.630 0.00 0.00 0.00 2.69
3499 5750 6.747125 TGCATGTTGTCACTGATAACAAATT 58.253 32.000 21.08 6.47 44.22 1.82
3537 5789 5.413213 CCAGTCACCAATTAACGTAATTCCA 59.587 40.000 0.00 0.00 36.29 3.53
3570 5822 8.685427 TGACAATGTTTTCTCATATATTGTGGG 58.315 33.333 0.00 0.00 38.45 4.61
3574 5826 6.969043 TGTTTTCTCATATATTGTGGGACCT 58.031 36.000 0.00 0.00 0.00 3.85
3868 6147 3.664107 TGCGGATTGGATGTTATAGCTC 58.336 45.455 0.00 0.00 0.00 4.09
4094 6374 2.459934 GTTTTTCGGTGCTGGTTCTTG 58.540 47.619 0.00 0.00 0.00 3.02
4107 6387 3.515104 CTGGTTCTTGCCCCACAATTTAT 59.485 43.478 0.00 0.00 37.72 1.40
4155 6438 8.659569 TTAGTTTTAACTCGTACGTGTATCAG 57.340 34.615 21.83 10.30 40.37 2.90
4164 6447 4.086574 CGTACGTGTATCAGTATATGCGG 58.913 47.826 7.22 0.00 0.00 5.69
4201 6484 3.515562 TCTTACCCCCACAATTTTGCAT 58.484 40.909 0.00 0.00 0.00 3.96
4284 6567 7.445121 TCTCCTGCATATCACAATAAACCTAG 58.555 38.462 0.00 0.00 0.00 3.02
4470 6756 9.974750 GTTCTTCTCTTCGTTATCTAATTTTGG 57.025 33.333 0.00 0.00 0.00 3.28
4520 6842 6.774673 TGACCTAATGAAACCTCATGTTGTA 58.225 36.000 0.00 0.00 41.66 2.41
4558 6880 2.228582 TCTTTTGACCATGCATTCACCG 59.771 45.455 0.00 0.00 0.00 4.94
4598 6920 3.729004 GCTTCGTGCACTGTTGTAC 57.271 52.632 16.19 0.00 42.31 2.90
4689 7011 4.443621 TCACTGTATTTCCACACGAAACA 58.556 39.130 0.00 0.00 43.21 2.83
4854 7182 5.200483 CCTTGGTATATGTGGGAACAACAT 58.800 41.667 0.00 0.00 46.06 2.71
5021 7357 1.683011 CCTCTGTTGTATGGCTTGGGG 60.683 57.143 0.00 0.00 0.00 4.96
5071 7408 1.403249 GCTTGCCATGAACCATGTGAC 60.403 52.381 0.00 0.00 39.94 3.67
5094 7431 9.157104 TGACGTTTATTGTGCAGAATTTAGATA 57.843 29.630 14.96 0.00 0.00 1.98
5146 10424 6.454795 AGTATACACTTTGTTTGCATTTGGG 58.545 36.000 5.50 0.00 0.00 4.12
5154 10432 5.809719 TTGTTTGCATTTGGGTTCTTTTC 57.190 34.783 0.00 0.00 0.00 2.29
5244 10715 9.656834 GAGTTATTTTTAACGATGCAAATTTCG 57.343 29.630 5.91 5.91 35.25 3.46
5250 10721 3.187478 ACGATGCAAATTTCGTCACAG 57.813 42.857 7.24 0.00 33.20 3.66
5260 10731 3.804786 TTTCGTCACAGTCCACAAGTA 57.195 42.857 0.00 0.00 0.00 2.24
5261 10732 2.787601 TCGTCACAGTCCACAAGTAC 57.212 50.000 0.00 0.00 0.00 2.73
5262 10733 2.304092 TCGTCACAGTCCACAAGTACT 58.696 47.619 0.00 0.00 0.00 2.73
5263 10734 2.292569 TCGTCACAGTCCACAAGTACTC 59.707 50.000 0.00 0.00 0.00 2.59
5264 10735 2.607282 CGTCACAGTCCACAAGTACTCC 60.607 54.545 0.00 0.00 0.00 3.85
5265 10736 1.968493 TCACAGTCCACAAGTACTCCC 59.032 52.381 0.00 0.00 0.00 4.30
5266 10737 1.971357 CACAGTCCACAAGTACTCCCT 59.029 52.381 0.00 0.00 0.00 4.20
5267 10738 2.028930 CACAGTCCACAAGTACTCCCTC 60.029 54.545 0.00 0.00 0.00 4.30
5268 10739 1.550976 CAGTCCACAAGTACTCCCTCC 59.449 57.143 0.00 0.00 0.00 4.30
5269 10740 0.531200 GTCCACAAGTACTCCCTCCG 59.469 60.000 0.00 0.00 0.00 4.63
5270 10741 0.113776 TCCACAAGTACTCCCTCCGT 59.886 55.000 0.00 0.00 0.00 4.69
5271 10742 0.531200 CCACAAGTACTCCCTCCGTC 59.469 60.000 0.00 0.00 0.00 4.79
5272 10743 0.531200 CACAAGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
5273 10744 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
5274 10745 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
5275 10746 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
5276 10747 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
5277 10748 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
5278 10749 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
5279 10750 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
5280 10751 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
5281 10752 2.090943 ACTCCCTCCGTCCCATAATACA 60.091 50.000 0.00 0.00 0.00 2.29
5282 10753 2.969950 CTCCCTCCGTCCCATAATACAA 59.030 50.000 0.00 0.00 0.00 2.41
5283 10754 2.969950 TCCCTCCGTCCCATAATACAAG 59.030 50.000 0.00 0.00 0.00 3.16
5284 10755 2.969950 CCCTCCGTCCCATAATACAAGA 59.030 50.000 0.00 0.00 0.00 3.02
5285 10756 3.006967 CCCTCCGTCCCATAATACAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
5286 10757 3.555168 CCTCCGTCCCATAATACAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
5287 10758 2.035449 TCCGTCCCATAATACAAGAGCG 59.965 50.000 0.00 0.00 0.00 5.03
5288 10759 2.223971 CCGTCCCATAATACAAGAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
5289 10760 3.454375 CGTCCCATAATACAAGAGCGTT 58.546 45.455 0.00 0.00 0.00 4.84
5290 10761 3.869246 CGTCCCATAATACAAGAGCGTTT 59.131 43.478 0.00 0.00 0.00 3.60
5291 10762 4.331717 CGTCCCATAATACAAGAGCGTTTT 59.668 41.667 0.00 0.00 0.00 2.43
5292 10763 5.163794 CGTCCCATAATACAAGAGCGTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
5293 10764 6.027749 GTCCCATAATACAAGAGCGTTTTTG 58.972 40.000 0.85 0.85 0.00 2.44
5294 10765 5.941058 TCCCATAATACAAGAGCGTTTTTGA 59.059 36.000 9.51 0.00 0.00 2.69
5295 10766 6.027749 CCCATAATACAAGAGCGTTTTTGAC 58.972 40.000 9.51 0.00 0.00 3.18
5296 10767 6.348950 CCCATAATACAAGAGCGTTTTTGACA 60.349 38.462 9.51 0.00 0.00 3.58
5297 10768 6.523201 CCATAATACAAGAGCGTTTTTGACAC 59.477 38.462 9.51 0.00 0.00 3.67
5298 10769 5.751243 AATACAAGAGCGTTTTTGACACT 57.249 34.783 9.51 0.00 0.00 3.55
5299 10770 3.405170 ACAAGAGCGTTTTTGACACTG 57.595 42.857 9.51 0.00 0.00 3.66
5300 10771 2.111756 CAAGAGCGTTTTTGACACTGC 58.888 47.619 0.00 0.00 0.00 4.40
5301 10772 1.378531 AGAGCGTTTTTGACACTGCA 58.621 45.000 0.00 0.00 0.00 4.41
5302 10773 1.064060 AGAGCGTTTTTGACACTGCAC 59.936 47.619 0.00 0.00 0.00 4.57
5303 10774 1.064060 GAGCGTTTTTGACACTGCACT 59.936 47.619 0.00 0.00 0.00 4.40
5304 10775 2.285083 AGCGTTTTTGACACTGCACTA 58.715 42.857 0.00 0.00 0.00 2.74
5305 10776 2.287915 AGCGTTTTTGACACTGCACTAG 59.712 45.455 0.00 0.00 0.00 2.57
5306 10777 2.031683 GCGTTTTTGACACTGCACTAGT 59.968 45.455 0.00 0.00 41.36 2.57
5319 10790 4.863131 ACTGCACTAGTGTAATAAACGCTC 59.137 41.667 23.44 3.51 46.05 5.03
5320 10791 5.068234 TGCACTAGTGTAATAAACGCTCT 57.932 39.130 23.44 0.00 46.05 4.09
5321 10792 5.475719 TGCACTAGTGTAATAAACGCTCTT 58.524 37.500 23.44 0.00 46.05 2.85
5322 10793 6.623486 TGCACTAGTGTAATAAACGCTCTTA 58.377 36.000 23.44 0.00 46.05 2.10
5323 10794 7.262772 TGCACTAGTGTAATAAACGCTCTTAT 58.737 34.615 23.44 0.00 46.05 1.73
5324 10795 8.407832 TGCACTAGTGTAATAAACGCTCTTATA 58.592 33.333 23.44 0.00 46.05 0.98
5325 10796 9.408069 GCACTAGTGTAATAAACGCTCTTATAT 57.592 33.333 23.44 0.00 46.05 0.86
5330 10801 9.924650 AGTGTAATAAACGCTCTTATATTAGGG 57.075 33.333 0.00 0.00 46.05 3.53
5331 10802 9.148104 GTGTAATAAACGCTCTTATATTAGGGG 57.852 37.037 0.00 0.00 35.62 4.79
5332 10803 9.092338 TGTAATAAACGCTCTTATATTAGGGGA 57.908 33.333 0.00 0.00 0.00 4.81
5333 10804 9.363763 GTAATAAACGCTCTTATATTAGGGGAC 57.636 37.037 0.00 0.00 0.00 4.46
5334 10805 4.516365 AACGCTCTTATATTAGGGGACG 57.484 45.455 0.00 0.00 0.00 4.79
5335 10806 2.824341 ACGCTCTTATATTAGGGGACGG 59.176 50.000 0.00 0.00 0.00 4.79
5336 10807 3.087031 CGCTCTTATATTAGGGGACGGA 58.913 50.000 0.00 0.00 0.00 4.69
5337 10808 3.128938 CGCTCTTATATTAGGGGACGGAG 59.871 52.174 0.00 0.00 0.00 4.63
5338 10809 3.447944 GCTCTTATATTAGGGGACGGAGG 59.552 52.174 0.00 0.00 0.00 4.30
5339 10810 4.024670 CTCTTATATTAGGGGACGGAGGG 58.975 52.174 0.00 0.00 0.00 4.30
5340 10811 3.664127 TCTTATATTAGGGGACGGAGGGA 59.336 47.826 0.00 0.00 0.00 4.20
5341 10812 2.625282 ATATTAGGGGACGGAGGGAG 57.375 55.000 0.00 0.00 0.00 4.30
5342 10813 1.238615 TATTAGGGGACGGAGGGAGT 58.761 55.000 0.00 0.00 0.00 3.85
5373 10844 5.316167 AGTGGCATATTGGTGTATGTATGG 58.684 41.667 0.00 0.00 35.09 2.74
5415 10886 4.367039 TTCCTGGTAGCACTAAAAAGCT 57.633 40.909 0.00 0.00 44.55 3.74
5444 10915 8.116753 CGTCTACATTTGATGTTTAGCTTAAGG 58.883 37.037 4.29 0.00 41.63 2.69
5458 10929 4.985538 AGCTTAAGGTGAAATGTGGAAGA 58.014 39.130 6.33 0.00 0.00 2.87
5465 10936 5.299949 AGGTGAAATGTGGAAGAAAAATGC 58.700 37.500 0.00 0.00 0.00 3.56
5544 11015 6.263168 ACAGTAAAAGAAATGAACAGGTGGAG 59.737 38.462 0.00 0.00 0.00 3.86
5582 11053 9.388506 CCATCTCCAATTATATACATGTCCTTC 57.611 37.037 0.00 0.00 0.00 3.46
5594 11065 5.248870 ACATGTCCTTCAAGTTGTTTGAC 57.751 39.130 2.11 8.29 45.22 3.18
5627 11098 4.094476 AGTAGGTGCCACTGTTATACACT 58.906 43.478 0.00 0.00 0.00 3.55
5768 11348 7.040892 TGCAAGTATATGCTGATGATTTTCCTC 60.041 37.037 0.00 0.00 46.54 3.71
5772 11352 3.057969 TGCTGATGATTTTCCTCGTGT 57.942 42.857 0.00 0.00 0.00 4.49
5968 11548 4.124238 TCACGAGAAGTAAAACCTGTTGG 58.876 43.478 0.00 0.00 39.83 3.77
6028 11608 8.004087 AGCGTTGTACTCCTTATATTAGTTCA 57.996 34.615 0.00 0.00 0.00 3.18
6056 11636 7.899648 TTAAGGAAGACATGGGTGTTAAAAA 57.100 32.000 0.00 0.00 39.09 1.94
6073 11653 8.259411 GTGTTAAAAAGGTTAAAAAGGAAGGGA 58.741 33.333 0.00 0.00 0.00 4.20
6170 11752 2.185004 AATCCACGTGCTGCTACTTT 57.815 45.000 10.91 0.00 0.00 2.66
6175 11757 3.682858 TCCACGTGCTGCTACTTTTTATC 59.317 43.478 10.91 0.00 0.00 1.75
6251 11835 7.017319 TCCAGAGCTTGATTATCATCATCAT 57.983 36.000 0.00 0.00 39.28 2.45
6252 11836 7.104290 TCCAGAGCTTGATTATCATCATCATC 58.896 38.462 0.00 0.00 39.28 2.92
6253 11837 6.879458 CCAGAGCTTGATTATCATCATCATCA 59.121 38.462 0.00 0.00 39.28 3.07
6283 11957 9.235537 GCTAAAAAGTATTCTACTCGTTCCTAG 57.764 37.037 0.00 0.00 38.26 3.02
6286 11960 9.993454 AAAAAGTATTCTACTCGTTCCTAGTTT 57.007 29.630 0.00 0.00 38.26 2.66
6287 11961 9.636879 AAAAGTATTCTACTCGTTCCTAGTTTC 57.363 33.333 0.00 0.00 38.26 2.78
6288 11962 7.332213 AGTATTCTACTCGTTCCTAGTTTCC 57.668 40.000 0.00 0.00 32.47 3.13
6289 11963 7.118060 AGTATTCTACTCGTTCCTAGTTTCCT 58.882 38.462 0.00 0.00 32.47 3.36
6290 11964 5.640189 TTCTACTCGTTCCTAGTTTCCTG 57.360 43.478 0.00 0.00 0.00 3.86
6291 11965 2.745515 ACTCGTTCCTAGTTTCCTGC 57.254 50.000 0.00 0.00 0.00 4.85
6292 11966 1.275573 ACTCGTTCCTAGTTTCCTGCC 59.724 52.381 0.00 0.00 0.00 4.85
6349 12023 2.710377 TGTGGTGTGAATGGATGTAGC 58.290 47.619 0.00 0.00 0.00 3.58
6367 12041 1.961180 GCGGGACAGTGATAGCAGGT 61.961 60.000 0.00 0.00 0.00 4.00
6383 12057 0.178990 AGGTTTGGGTGAGGAAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
6420 12094 3.222603 ACCTGAGTGATTTTGGACCAAC 58.777 45.455 6.36 0.00 0.00 3.77
6421 12095 3.117512 ACCTGAGTGATTTTGGACCAACT 60.118 43.478 6.36 0.08 0.00 3.16
6422 12096 3.891366 CCTGAGTGATTTTGGACCAACTT 59.109 43.478 6.36 0.00 0.00 2.66
6457 12149 1.367659 ACACGAGACGAGGCTACTAC 58.632 55.000 0.00 0.00 0.00 2.73
6458 12150 1.338484 ACACGAGACGAGGCTACTACA 60.338 52.381 0.00 0.00 0.00 2.74
6459 12151 1.736126 CACGAGACGAGGCTACTACAA 59.264 52.381 0.00 0.00 0.00 2.41
6460 12152 2.008329 ACGAGACGAGGCTACTACAAG 58.992 52.381 0.00 0.00 0.00 3.16
6461 12153 1.268133 CGAGACGAGGCTACTACAAGC 60.268 57.143 0.00 0.00 41.99 4.01
6462 12154 1.743958 GAGACGAGGCTACTACAAGCA 59.256 52.381 0.00 0.00 44.64 3.91
6463 12155 2.359531 GAGACGAGGCTACTACAAGCAT 59.640 50.000 0.00 0.00 44.64 3.79
6464 12156 3.552875 AGACGAGGCTACTACAAGCATA 58.447 45.455 0.00 0.00 44.64 3.14
6465 12157 3.315749 AGACGAGGCTACTACAAGCATAC 59.684 47.826 0.00 0.00 44.64 2.39
6466 12158 2.361438 ACGAGGCTACTACAAGCATACC 59.639 50.000 0.00 0.00 44.64 2.73
6467 12159 2.288273 CGAGGCTACTACAAGCATACCC 60.288 54.545 0.00 0.00 44.64 3.69
6468 12160 2.966516 GAGGCTACTACAAGCATACCCT 59.033 50.000 0.00 0.00 44.64 4.34
6469 12161 4.150359 GAGGCTACTACAAGCATACCCTA 58.850 47.826 0.00 0.00 44.64 3.53
6470 12162 4.753186 AGGCTACTACAAGCATACCCTAT 58.247 43.478 0.00 0.00 44.64 2.57
6471 12163 5.900437 AGGCTACTACAAGCATACCCTATA 58.100 41.667 0.00 0.00 44.64 1.31
6515 12207 0.740737 GCACTTTGGCAGCGGAATAT 59.259 50.000 0.00 0.00 0.00 1.28
6723 12459 1.327303 GAGATGAGAGGCTCCATCGT 58.673 55.000 26.24 19.36 0.00 3.73
6784 12520 2.514592 CGGGGCTGGCATGTACTG 60.515 66.667 2.88 0.00 0.00 2.74
6785 12521 2.677228 GGGGCTGGCATGTACTGT 59.323 61.111 2.88 0.00 0.00 3.55
6786 12522 1.912220 GGGGCTGGCATGTACTGTA 59.088 57.895 2.88 0.00 0.00 2.74
6787 12523 0.463833 GGGGCTGGCATGTACTGTAC 60.464 60.000 10.98 10.98 0.00 2.90
6792 12528 3.118738 GGCTGGCATGTACTGTACTAGTT 60.119 47.826 17.98 0.00 40.89 2.24
6805 12541 5.470777 ACTGTACTAGTTCGAGCATATCTCC 59.529 44.000 0.00 0.00 35.67 3.71
6863 12599 8.185506 ACACACAAATCCGAGGTATATATACA 57.814 34.615 21.56 4.14 34.98 2.29
6864 12600 8.086522 ACACACAAATCCGAGGTATATATACAC 58.913 37.037 21.56 14.38 34.98 2.90
6888 12624 0.179174 CGGCGCAAATACTTCCAACC 60.179 55.000 10.83 0.00 0.00 3.77
7036 12775 3.214328 TCCTTCCTCACTTTGTTTCAGC 58.786 45.455 0.00 0.00 0.00 4.26
7065 12804 4.616181 ACCGTTCTCAAAACACAAGAAG 57.384 40.909 0.00 0.00 30.07 2.85
7066 12821 4.258543 ACCGTTCTCAAAACACAAGAAGA 58.741 39.130 0.00 0.00 30.07 2.87
7070 12825 5.511729 CGTTCTCAAAACACAAGAAGAAACC 59.488 40.000 0.00 0.00 30.07 3.27
7132 12900 3.687212 CGATCGATCCTCTGTGCTACTAT 59.313 47.826 19.51 0.00 0.00 2.12
7139 12907 3.066342 TCCTCTGTGCTACTATTACGTGC 59.934 47.826 0.00 0.00 0.00 5.34
7153 12921 3.136123 GTGCCATGCCACGCAGAT 61.136 61.111 0.00 0.00 43.65 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.617322 GTTGGAGAGGGGAAACAACC 58.383 55.000 0.00 0.00 36.37 3.77
4 5 1.617322 GGTTGGAGAGGGGAAACAAC 58.383 55.000 0.00 0.00 40.35 3.32
8 9 0.104144 TGAGGGTTGGAGAGGGGAAA 60.104 55.000 0.00 0.00 0.00 3.13
9 10 0.840722 GTGAGGGTTGGAGAGGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
10 11 1.229529 GTGAGGGTTGGAGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
11 12 0.842467 AAGTGAGGGTTGGAGAGGGG 60.842 60.000 0.00 0.00 0.00 4.79
12 13 1.068121 AAAGTGAGGGTTGGAGAGGG 58.932 55.000 0.00 0.00 0.00 4.30
13 14 2.959465 AAAAGTGAGGGTTGGAGAGG 57.041 50.000 0.00 0.00 0.00 3.69
14 15 4.323104 CCTCTAAAAGTGAGGGTTGGAGAG 60.323 50.000 2.09 0.00 45.39 3.20
15 16 3.583086 CCTCTAAAAGTGAGGGTTGGAGA 59.417 47.826 2.09 0.00 45.39 3.71
16 17 3.944087 CCTCTAAAAGTGAGGGTTGGAG 58.056 50.000 2.09 0.00 45.39 3.86
24 25 2.834549 TCTCCCAGCCTCTAAAAGTGAG 59.165 50.000 0.00 0.00 0.00 3.51
25 26 2.834549 CTCTCCCAGCCTCTAAAAGTGA 59.165 50.000 0.00 0.00 0.00 3.41
26 27 2.679349 GCTCTCCCAGCCTCTAAAAGTG 60.679 54.545 0.00 0.00 43.17 3.16
27 28 1.557371 GCTCTCCCAGCCTCTAAAAGT 59.443 52.381 0.00 0.00 43.17 2.66
28 29 2.323968 GCTCTCCCAGCCTCTAAAAG 57.676 55.000 0.00 0.00 43.17 2.27
38 39 4.101448 CCCGGGTTGCTCTCCCAG 62.101 72.222 14.18 1.25 44.81 4.45
45 46 4.660938 GTTGGAGCCCGGGTTGCT 62.661 66.667 28.25 16.85 43.03 3.91
54 55 4.617253 AACAATTTTAAGGGTTGGAGCC 57.383 40.909 0.00 0.00 35.59 4.70
55 56 6.163476 CCTAAACAATTTTAAGGGTTGGAGC 58.837 40.000 0.00 0.00 0.00 4.70
56 57 6.295632 CCCCTAAACAATTTTAAGGGTTGGAG 60.296 42.308 9.85 0.00 41.50 3.86
57 58 5.544562 CCCCTAAACAATTTTAAGGGTTGGA 59.455 40.000 9.85 0.00 41.50 3.53
58 59 5.800296 CCCCTAAACAATTTTAAGGGTTGG 58.200 41.667 9.85 0.00 41.50 3.77
66 67 9.785854 ACCCATATAAACCCCTAAACAATTTTA 57.214 29.630 0.00 0.00 0.00 1.52
67 68 8.688222 ACCCATATAAACCCCTAAACAATTTT 57.312 30.769 0.00 0.00 0.00 1.82
68 69 8.688222 AACCCATATAAACCCCTAAACAATTT 57.312 30.769 0.00 0.00 0.00 1.82
69 70 8.126385 AGAACCCATATAAACCCCTAAACAATT 58.874 33.333 0.00 0.00 0.00 2.32
70 71 7.658260 AGAACCCATATAAACCCCTAAACAAT 58.342 34.615 0.00 0.00 0.00 2.71
71 72 7.046891 AGAACCCATATAAACCCCTAAACAA 57.953 36.000 0.00 0.00 0.00 2.83
72 73 6.661740 AGAACCCATATAAACCCCTAAACA 57.338 37.500 0.00 0.00 0.00 2.83
73 74 7.809238 ACTAGAACCCATATAAACCCCTAAAC 58.191 38.462 0.00 0.00 0.00 2.01
74 75 7.853003 AGACTAGAACCCATATAAACCCCTAAA 59.147 37.037 0.00 0.00 0.00 1.85
75 76 7.375890 AGACTAGAACCCATATAAACCCCTAA 58.624 38.462 0.00 0.00 0.00 2.69
76 77 6.941915 AGACTAGAACCCATATAAACCCCTA 58.058 40.000 0.00 0.00 0.00 3.53
77 78 5.800653 AGACTAGAACCCATATAAACCCCT 58.199 41.667 0.00 0.00 0.00 4.79
78 79 6.511017 AAGACTAGAACCCATATAAACCCC 57.489 41.667 0.00 0.00 0.00 4.95
79 80 6.262496 GCAAAGACTAGAACCCATATAAACCC 59.738 42.308 0.00 0.00 0.00 4.11
80 81 7.054751 AGCAAAGACTAGAACCCATATAAACC 58.945 38.462 0.00 0.00 0.00 3.27
81 82 8.507524 AAGCAAAGACTAGAACCCATATAAAC 57.492 34.615 0.00 0.00 0.00 2.01
82 83 9.528489 AAAAGCAAAGACTAGAACCCATATAAA 57.472 29.630 0.00 0.00 0.00 1.40
83 84 9.528489 AAAAAGCAAAGACTAGAACCCATATAA 57.472 29.630 0.00 0.00 0.00 0.98
127 128 3.620427 AACCCTCAAAAACCGCTTTTT 57.380 38.095 0.00 0.00 39.70 1.94
128 129 3.055747 TCAAACCCTCAAAAACCGCTTTT 60.056 39.130 0.00 0.00 37.75 2.27
129 130 2.498078 TCAAACCCTCAAAAACCGCTTT 59.502 40.909 0.00 0.00 0.00 3.51
130 131 2.100749 CTCAAACCCTCAAAAACCGCTT 59.899 45.455 0.00 0.00 0.00 4.68
131 132 1.681264 CTCAAACCCTCAAAAACCGCT 59.319 47.619 0.00 0.00 0.00 5.52
132 133 1.269569 CCTCAAACCCTCAAAAACCGC 60.270 52.381 0.00 0.00 0.00 5.68
133 134 1.339929 CCCTCAAACCCTCAAAAACCG 59.660 52.381 0.00 0.00 0.00 4.44
134 135 2.394632 ACCCTCAAACCCTCAAAAACC 58.605 47.619 0.00 0.00 0.00 3.27
135 136 4.212716 AGTACCCTCAAACCCTCAAAAAC 58.787 43.478 0.00 0.00 0.00 2.43
136 137 4.529716 AGTACCCTCAAACCCTCAAAAA 57.470 40.909 0.00 0.00 0.00 1.94
137 138 4.661709 AGTAGTACCCTCAAACCCTCAAAA 59.338 41.667 0.00 0.00 0.00 2.44
138 139 4.237018 AGTAGTACCCTCAAACCCTCAAA 58.763 43.478 0.00 0.00 0.00 2.69
139 140 3.865571 AGTAGTACCCTCAAACCCTCAA 58.134 45.455 0.00 0.00 0.00 3.02
140 141 3.555117 AGTAGTACCCTCAAACCCTCA 57.445 47.619 0.00 0.00 0.00 3.86
141 142 4.401837 CAGTAGTAGTACCCTCAAACCCTC 59.598 50.000 4.02 0.00 0.00 4.30
142 143 4.045079 TCAGTAGTAGTACCCTCAAACCCT 59.955 45.833 4.02 0.00 0.00 4.34
143 144 4.347607 TCAGTAGTAGTACCCTCAAACCC 58.652 47.826 4.02 0.00 0.00 4.11
144 145 5.681695 GCATCAGTAGTAGTACCCTCAAACC 60.682 48.000 4.02 0.00 0.00 3.27
145 146 5.127356 AGCATCAGTAGTAGTACCCTCAAAC 59.873 44.000 4.02 0.00 0.00 2.93
146 147 5.269991 AGCATCAGTAGTAGTACCCTCAAA 58.730 41.667 4.02 0.00 0.00 2.69
147 148 4.868268 AGCATCAGTAGTAGTACCCTCAA 58.132 43.478 4.02 0.00 0.00 3.02
148 149 4.166337 AGAGCATCAGTAGTAGTACCCTCA 59.834 45.833 4.02 0.00 37.82 3.86
149 150 4.721132 AGAGCATCAGTAGTAGTACCCTC 58.279 47.826 4.02 3.75 37.82 4.30
150 151 4.799715 AGAGCATCAGTAGTAGTACCCT 57.200 45.455 4.02 0.00 37.82 4.34
151 152 5.048573 GCTAAGAGCATCAGTAGTAGTACCC 60.049 48.000 4.02 0.00 41.89 3.69
152 153 6.004408 GCTAAGAGCATCAGTAGTAGTACC 57.996 45.833 4.02 0.00 41.89 3.34
167 168 1.516603 GTCGGGTCGTGCTAAGAGC 60.517 63.158 0.00 0.00 42.82 4.09
168 169 0.179161 CAGTCGGGTCGTGCTAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
169 170 1.880894 CAGTCGGGTCGTGCTAAGA 59.119 57.895 0.00 0.00 0.00 2.10
170 171 1.805945 GCAGTCGGGTCGTGCTAAG 60.806 63.158 0.00 0.00 34.23 2.18
171 172 0.961857 TAGCAGTCGGGTCGTGCTAA 60.962 55.000 9.21 0.00 45.72 3.09
172 173 0.961857 TTAGCAGTCGGGTCGTGCTA 60.962 55.000 8.03 8.03 45.72 3.49
174 175 0.101759 TATTAGCAGTCGGGTCGTGC 59.898 55.000 0.00 0.00 37.48 5.34
175 176 1.269102 CCTATTAGCAGTCGGGTCGTG 60.269 57.143 0.00 0.00 0.00 4.35
176 177 1.030457 CCTATTAGCAGTCGGGTCGT 58.970 55.000 0.00 0.00 0.00 4.34
177 178 1.030457 ACCTATTAGCAGTCGGGTCG 58.970 55.000 0.00 0.00 0.00 4.79
178 179 3.538634 AAACCTATTAGCAGTCGGGTC 57.461 47.619 0.00 0.00 0.00 4.46
179 180 3.606687 CAAAACCTATTAGCAGTCGGGT 58.393 45.455 0.00 0.00 0.00 5.28
180 181 2.354821 GCAAAACCTATTAGCAGTCGGG 59.645 50.000 0.00 0.00 0.00 5.14
181 182 2.354821 GGCAAAACCTATTAGCAGTCGG 59.645 50.000 0.00 0.00 34.51 4.79
182 183 2.354821 GGGCAAAACCTATTAGCAGTCG 59.645 50.000 0.00 0.00 39.10 4.18
183 184 2.688446 GGGGCAAAACCTATTAGCAGTC 59.312 50.000 0.00 0.00 39.10 3.51
184 185 2.735151 GGGGCAAAACCTATTAGCAGT 58.265 47.619 0.00 0.00 39.10 4.40
185 186 1.676006 CGGGGCAAAACCTATTAGCAG 59.324 52.381 0.00 0.00 39.10 4.24
186 187 1.757682 CGGGGCAAAACCTATTAGCA 58.242 50.000 0.00 0.00 39.10 3.49
187 188 0.384309 GCGGGGCAAAACCTATTAGC 59.616 55.000 0.00 0.00 39.10 3.09
188 189 2.052782 AGCGGGGCAAAACCTATTAG 57.947 50.000 0.00 0.00 39.10 1.73
189 190 2.494073 CAAAGCGGGGCAAAACCTATTA 59.506 45.455 0.00 0.00 39.10 0.98
190 191 1.275010 CAAAGCGGGGCAAAACCTATT 59.725 47.619 0.00 0.00 39.10 1.73
191 192 0.894835 CAAAGCGGGGCAAAACCTAT 59.105 50.000 0.00 0.00 39.10 2.57
192 193 0.178987 TCAAAGCGGGGCAAAACCTA 60.179 50.000 0.00 0.00 39.10 3.08
193 194 0.831711 ATCAAAGCGGGGCAAAACCT 60.832 50.000 0.00 0.00 39.10 3.50
194 195 0.892063 TATCAAAGCGGGGCAAAACC 59.108 50.000 0.00 0.00 37.93 3.27
209 210 2.550180 CGTCATCGCTCCTCTCTTATCA 59.450 50.000 0.00 0.00 0.00 2.15
213 214 1.336440 CATCGTCATCGCTCCTCTCTT 59.664 52.381 0.00 0.00 36.96 2.85
253 254 5.014858 ACCTAGCAACTACTACAAGCACTA 58.985 41.667 0.00 0.00 0.00 2.74
266 267 1.183549 CCGTAGACCACCTAGCAACT 58.816 55.000 0.00 0.00 0.00 3.16
295 298 7.697291 CAGGAACACCAAAAATGACAAAAATTG 59.303 33.333 0.00 0.00 0.00 2.32
305 308 4.795962 GCAGTACCAGGAACACCAAAAATG 60.796 45.833 0.00 0.00 0.00 2.32
327 330 7.985752 TCTGATCTATTCATCATATGTCATGGC 59.014 37.037 1.90 0.00 32.21 4.40
367 372 9.853555 TTGACATGTCGCAATCTAAATTATTTT 57.146 25.926 20.54 0.00 0.00 1.82
413 427 7.814107 CGCATTTGGTTGGCATTTATTCTATAT 59.186 33.333 0.00 0.00 0.00 0.86
414 428 7.144661 CGCATTTGGTTGGCATTTATTCTATA 58.855 34.615 0.00 0.00 0.00 1.31
415 429 5.984926 CGCATTTGGTTGGCATTTATTCTAT 59.015 36.000 0.00 0.00 0.00 1.98
416 430 5.347342 CGCATTTGGTTGGCATTTATTCTA 58.653 37.500 0.00 0.00 0.00 2.10
417 431 4.183101 CGCATTTGGTTGGCATTTATTCT 58.817 39.130 0.00 0.00 0.00 2.40
477 1691 4.464112 CACTTTCTCCGAATTTTTCCGTC 58.536 43.478 0.00 0.00 0.00 4.79
550 1788 6.535508 AGACTGAACCGTATTCTTTTATGAGC 59.464 38.462 0.00 0.00 0.00 4.26
565 1803 2.261671 CGGGACCAGACTGAACCG 59.738 66.667 14.83 14.83 35.01 4.44
609 1864 0.817013 GGTGCCATGGTGTATTGGTG 59.183 55.000 14.67 0.00 0.00 4.17
610 1865 0.679640 CGGTGCCATGGTGTATTGGT 60.680 55.000 14.67 0.00 0.00 3.67
611 1866 0.679640 ACGGTGCCATGGTGTATTGG 60.680 55.000 14.67 0.00 0.00 3.16
612 1867 0.451383 CACGGTGCCATGGTGTATTG 59.549 55.000 14.67 2.00 0.00 1.90
613 1868 1.312371 GCACGGTGCCATGGTGTATT 61.312 55.000 22.19 0.00 37.42 1.89
614 1869 1.748879 GCACGGTGCCATGGTGTAT 60.749 57.895 22.19 0.00 37.42 2.29
615 1870 2.359354 GCACGGTGCCATGGTGTA 60.359 61.111 22.19 0.00 37.42 2.90
658 1932 1.261238 CGGTGCTCTTCTCCCCTCTT 61.261 60.000 0.00 0.00 0.00 2.85
663 1937 1.443828 GATCCGGTGCTCTTCTCCC 59.556 63.158 0.00 0.00 0.00 4.30
735 2019 0.601841 CGTTTGCTTCCACCTACCGT 60.602 55.000 0.00 0.00 0.00 4.83
1013 2313 3.410788 ATGCGGGGAGATCTGGGGA 62.411 63.158 0.00 0.00 0.00 4.81
1015 2315 2.746359 GATGCGGGGAGATCTGGG 59.254 66.667 0.00 0.00 0.00 4.45
1017 2317 2.341543 CGGATGCGGGGAGATCTG 59.658 66.667 0.00 0.00 0.00 2.90
1018 2318 3.620785 GCGGATGCGGGGAGATCT 61.621 66.667 9.20 0.00 0.00 2.75
1028 2338 3.543536 GAGGGAGGGATGCGGATGC 62.544 68.421 0.00 0.00 43.20 3.91
1414 2752 2.203070 AATCAGGTCGGCGATGGC 60.203 61.111 14.79 0.00 38.90 4.40
1450 2793 5.220710 AGCCCTAACATCATCACATCTAC 57.779 43.478 0.00 0.00 0.00 2.59
1482 2840 0.179250 CACTACATCACGCACGTTGC 60.179 55.000 0.00 0.00 40.69 4.17
1487 2845 1.787847 GCCACACTACATCACGCAC 59.212 57.895 0.00 0.00 0.00 5.34
1494 2852 0.458543 CTTCTCGCGCCACACTACAT 60.459 55.000 0.00 0.00 0.00 2.29
1502 2860 1.816863 AAGGACTTCTTCTCGCGCCA 61.817 55.000 0.00 0.00 0.00 5.69
1511 2869 1.676006 CGGCAACACAAAGGACTTCTT 59.324 47.619 0.00 0.00 37.28 2.52
1563 2921 2.359848 TGTAATCGATGGGTGGAGTACG 59.640 50.000 0.00 0.00 36.72 3.67
1567 2925 1.762957 AGGTGTAATCGATGGGTGGAG 59.237 52.381 0.00 0.00 0.00 3.86
1724 3088 5.064452 GGAATGCAATGAACAGTCTACTCTG 59.936 44.000 0.00 0.00 40.80 3.35
1810 3175 6.326843 GGGACAGAGGGAGTAGTATTTACATT 59.673 42.308 0.00 0.00 0.00 2.71
1823 3188 5.646692 TTTATATTTGGGGACAGAGGGAG 57.353 43.478 0.00 0.00 44.54 4.30
1824 3189 5.630539 CGTTTTATATTTGGGGACAGAGGGA 60.631 44.000 0.00 0.00 44.54 4.20
1825 3190 4.578928 CGTTTTATATTTGGGGACAGAGGG 59.421 45.833 0.00 0.00 44.54 4.30
1826 3191 5.190677 ACGTTTTATATTTGGGGACAGAGG 58.809 41.667 0.00 0.00 44.54 3.69
1827 3192 6.113411 AGACGTTTTATATTTGGGGACAGAG 58.887 40.000 0.00 0.00 44.54 3.35
1828 3193 6.057321 AGACGTTTTATATTTGGGGACAGA 57.943 37.500 0.00 0.00 44.54 3.41
1829 3194 6.753107 AAGACGTTTTATATTTGGGGACAG 57.247 37.500 0.00 0.00 44.54 3.51
1848 3213 6.208994 ACTCCCTCCGTCACATAATATAAGAC 59.791 42.308 0.00 0.00 0.00 3.01
1849 3214 6.312529 ACTCCCTCCGTCACATAATATAAGA 58.687 40.000 0.00 0.00 0.00 2.10
1850 3215 6.591750 ACTCCCTCCGTCACATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
1851 3216 8.660295 AATACTCCCTCCGTCACATAATATAA 57.340 34.615 0.00 0.00 0.00 0.98
1852 3217 8.660295 AAATACTCCCTCCGTCACATAATATA 57.340 34.615 0.00 0.00 0.00 0.86
1853 3218 7.554959 AAATACTCCCTCCGTCACATAATAT 57.445 36.000 0.00 0.00 0.00 1.28
1854 3219 6.989155 AAATACTCCCTCCGTCACATAATA 57.011 37.500 0.00 0.00 0.00 0.98
1855 3220 5.888982 AAATACTCCCTCCGTCACATAAT 57.111 39.130 0.00 0.00 0.00 1.28
1856 3221 5.424757 CAAAATACTCCCTCCGTCACATAA 58.575 41.667 0.00 0.00 0.00 1.90
1857 3222 4.682320 GCAAAATACTCCCTCCGTCACATA 60.682 45.833 0.00 0.00 0.00 2.29
1858 3223 3.873910 CAAAATACTCCCTCCGTCACAT 58.126 45.455 0.00 0.00 0.00 3.21
1859 3224 2.614481 GCAAAATACTCCCTCCGTCACA 60.614 50.000 0.00 0.00 0.00 3.58
1860 3225 2.007608 GCAAAATACTCCCTCCGTCAC 58.992 52.381 0.00 0.00 0.00 3.67
1861 3226 1.626321 TGCAAAATACTCCCTCCGTCA 59.374 47.619 0.00 0.00 0.00 4.35
1862 3227 2.396590 TGCAAAATACTCCCTCCGTC 57.603 50.000 0.00 0.00 0.00 4.79
1863 3228 2.871096 TTGCAAAATACTCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
1864 3229 3.081804 ACTTTGCAAAATACTCCCTCCG 58.918 45.455 13.84 0.00 0.00 4.63
1865 3230 6.775594 AATACTTTGCAAAATACTCCCTCC 57.224 37.500 13.84 0.00 0.00 4.30
1866 3231 7.755373 GTCAAATACTTTGCAAAATACTCCCTC 59.245 37.037 13.84 0.00 40.43 4.30
1867 3232 7.574967 CGTCAAATACTTTGCAAAATACTCCCT 60.575 37.037 13.84 0.00 40.43 4.20
1868 3233 6.526674 CGTCAAATACTTTGCAAAATACTCCC 59.473 38.462 13.84 0.00 40.43 4.30
1869 3234 7.302524 TCGTCAAATACTTTGCAAAATACTCC 58.697 34.615 13.84 0.00 40.43 3.85
1870 3235 8.788813 CATCGTCAAATACTTTGCAAAATACTC 58.211 33.333 13.84 0.00 40.43 2.59
1871 3236 8.296713 ACATCGTCAAATACTTTGCAAAATACT 58.703 29.630 13.84 0.00 40.43 2.12
1872 3237 8.447787 ACATCGTCAAATACTTTGCAAAATAC 57.552 30.769 13.84 0.00 40.43 1.89
1933 3300 0.320771 GGTGAACAGACAGCATCGGT 60.321 55.000 0.00 0.00 37.33 4.69
1937 3304 1.632409 AGATGGGTGAACAGACAGCAT 59.368 47.619 0.00 0.00 39.61 3.79
1939 3306 2.234908 ACTAGATGGGTGAACAGACAGC 59.765 50.000 0.00 0.00 37.52 4.40
2133 3500 6.495181 TCCACTATGGAAAAGGCAAACATTAA 59.505 34.615 0.00 0.00 45.00 1.40
2134 3501 6.013379 TCCACTATGGAAAAGGCAAACATTA 58.987 36.000 0.00 0.00 45.00 1.90
2135 3502 4.837860 TCCACTATGGAAAAGGCAAACATT 59.162 37.500 0.00 0.00 45.00 2.71
2136 3503 4.415596 TCCACTATGGAAAAGGCAAACAT 58.584 39.130 0.00 0.00 45.00 2.71
2167 3534 3.141398 CTGGCTCTGCTTTGAAACTACA 58.859 45.455 0.00 0.00 0.00 2.74
2171 3538 1.609208 TCCTGGCTCTGCTTTGAAAC 58.391 50.000 0.00 0.00 0.00 2.78
2297 4308 4.516698 GGGCGAATGTGATAACATGAGAAT 59.483 41.667 0.00 0.00 0.00 2.40
2318 4329 4.391405 AGCAAACAGTTCTTTGAAAGGG 57.609 40.909 4.94 0.00 33.61 3.95
2420 4431 3.845781 CAGGACCAGTAACCTGCATAT 57.154 47.619 0.00 0.00 45.30 1.78
2432 4443 1.915141 ATGAAAGCCAACAGGACCAG 58.085 50.000 0.00 0.00 0.00 4.00
2492 4503 8.993121 TGACAGAGATCTCAAACAATAGAAAAC 58.007 33.333 24.39 0.00 0.00 2.43
2493 4504 9.559732 TTGACAGAGATCTCAAACAATAGAAAA 57.440 29.630 24.39 2.31 0.00 2.29
2638 4717 9.550811 GTAAACAAAGAACGAAAGAAGAAGAAA 57.449 29.630 0.00 0.00 0.00 2.52
2695 4775 5.662211 AACGTGTATGTTGTGTTAAGGAC 57.338 39.130 0.00 0.00 0.00 3.85
2714 4794 8.782533 AAGAGTAAGTATTTGAAGCAAAAACG 57.217 30.769 0.00 0.00 36.90 3.60
2919 4999 5.205821 TGCCTAAGTAGTTAGCATGGTAGA 58.794 41.667 11.30 0.00 35.22 2.59
2970 5210 0.475828 AAGGGCACTAGGAAGGTGGT 60.476 55.000 0.00 0.00 35.47 4.16
3001 5241 1.202521 CCTTGGGTTGTGCTGGAAAAC 60.203 52.381 0.00 0.00 0.00 2.43
3052 5303 1.202891 GCTGTGTAAACCACCCTCCTT 60.203 52.381 0.00 0.00 43.85 3.36
3053 5304 0.400594 GCTGTGTAAACCACCCTCCT 59.599 55.000 0.00 0.00 43.85 3.69
3054 5305 0.400594 AGCTGTGTAAACCACCCTCC 59.599 55.000 0.00 0.00 43.85 4.30
3141 5392 2.017783 CCTGCAATGCACAACACGC 61.018 57.895 2.72 0.00 33.79 5.34
3465 5716 6.917477 TCAGTGACAACATGCAATTTACTTTC 59.083 34.615 0.00 0.00 0.00 2.62
3468 5719 6.579666 ATCAGTGACAACATGCAATTTACT 57.420 33.333 0.00 0.00 0.00 2.24
3893 6172 2.514205 ACATTTGCAGAACACTTGGC 57.486 45.000 0.00 0.00 0.00 4.52
4029 6309 9.883142 ACTCCAACAAAATCATAAAAACAAGAA 57.117 25.926 0.00 0.00 0.00 2.52
4062 6342 3.241784 CACCGAAAAACCACAAAATCACG 59.758 43.478 0.00 0.00 0.00 4.35
4094 6374 2.485302 GGGCATTCATAAATTGTGGGGC 60.485 50.000 0.00 0.00 0.00 5.80
4132 6412 6.672147 ACTGATACACGTACGAGTTAAAACT 58.328 36.000 24.41 0.00 43.16 2.66
4178 6461 3.323403 TGCAAAATTGTGGGGGTAAGAAG 59.677 43.478 0.00 0.00 0.00 2.85
4293 6577 8.368126 CGATCTGTGAACAAAAATATGAAAAGC 58.632 33.333 0.00 0.00 0.00 3.51
4470 6756 1.377725 AGCCAGTATGTGCCAGCAC 60.378 57.895 15.80 15.80 46.33 4.40
4520 6842 2.664402 AGACAAGGTTGCTGATGGTT 57.336 45.000 0.00 0.00 0.00 3.67
4558 6880 3.983344 CAGCAAATTACACAAAGCCTGAC 59.017 43.478 0.00 0.00 0.00 3.51
4689 7011 7.392953 TGTTTGTATCATGTTACATGTGACCAT 59.607 33.333 22.58 12.20 32.39 3.55
4754 7080 6.552445 ACACCTGATAGTTTAAGATCAGCT 57.448 37.500 14.28 0.00 45.16 4.24
4947 7275 8.650143 ACAAACATGATACCTACTCCAAAAAT 57.350 30.769 0.00 0.00 0.00 1.82
5021 7357 3.473625 TCGAAAAGGAACCTGGAAGAAC 58.526 45.455 0.00 0.00 34.07 3.01
5146 10424 6.272822 AGCCTGACCAAATATGAAAAGAAC 57.727 37.500 0.00 0.00 0.00 3.01
5154 10432 4.191033 TGCAAAAGCCTGACCAAATATG 57.809 40.909 0.00 0.00 0.00 1.78
5244 10715 2.288886 GGGAGTACTTGTGGACTGTGAC 60.289 54.545 0.00 0.00 0.00 3.67
5250 10721 0.531200 CGGAGGGAGTACTTGTGGAC 59.469 60.000 0.00 0.00 0.00 4.02
5260 10731 2.090943 TGTATTATGGGACGGAGGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
5261 10732 2.605257 TGTATTATGGGACGGAGGGAG 58.395 52.381 0.00 0.00 0.00 4.30
5262 10733 2.779429 TGTATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
5263 10734 2.969950 TCTTGTATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5264 10735 3.555168 GCTCTTGTATTATGGGACGGAGG 60.555 52.174 0.00 0.00 0.00 4.30
5265 10736 3.654414 GCTCTTGTATTATGGGACGGAG 58.346 50.000 0.00 0.00 0.00 4.63
5266 10737 2.035449 CGCTCTTGTATTATGGGACGGA 59.965 50.000 0.00 0.00 0.00 4.69
5267 10738 2.223971 ACGCTCTTGTATTATGGGACGG 60.224 50.000 0.00 0.00 0.00 4.79
5268 10739 3.093717 ACGCTCTTGTATTATGGGACG 57.906 47.619 0.00 0.00 0.00 4.79
5269 10740 5.813080 AAAACGCTCTTGTATTATGGGAC 57.187 39.130 0.00 0.00 0.00 4.46
5270 10741 5.941058 TCAAAAACGCTCTTGTATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
5271 10742 6.027749 GTCAAAAACGCTCTTGTATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
5272 10743 6.523201 GTGTCAAAAACGCTCTTGTATTATGG 59.477 38.462 0.00 0.00 35.42 2.74
5273 10744 7.269084 CAGTGTCAAAAACGCTCTTGTATTATG 59.731 37.037 0.00 0.00 45.69 1.90
5274 10745 7.298122 CAGTGTCAAAAACGCTCTTGTATTAT 58.702 34.615 0.00 0.00 45.69 1.28
5275 10746 6.655062 CAGTGTCAAAAACGCTCTTGTATTA 58.345 36.000 0.00 0.00 45.69 0.98
5276 10747 5.510671 CAGTGTCAAAAACGCTCTTGTATT 58.489 37.500 0.00 0.00 45.69 1.89
5277 10748 4.554723 GCAGTGTCAAAAACGCTCTTGTAT 60.555 41.667 0.00 0.00 45.69 2.29
5278 10749 3.242608 GCAGTGTCAAAAACGCTCTTGTA 60.243 43.478 0.00 0.00 45.69 2.41
5279 10750 2.477863 GCAGTGTCAAAAACGCTCTTGT 60.478 45.455 0.00 0.00 45.69 3.16
5280 10751 2.111756 GCAGTGTCAAAAACGCTCTTG 58.888 47.619 0.00 0.00 45.69 3.02
5281 10752 1.742831 TGCAGTGTCAAAAACGCTCTT 59.257 42.857 0.00 0.00 45.69 2.85
5282 10753 1.064060 GTGCAGTGTCAAAAACGCTCT 59.936 47.619 0.00 0.00 45.69 4.09
5283 10754 1.064060 AGTGCAGTGTCAAAAACGCTC 59.936 47.619 0.00 0.00 45.69 5.03
5285 10756 2.031683 ACTAGTGCAGTGTCAAAAACGC 59.968 45.455 3.69 0.00 35.62 4.84
5286 10757 3.944422 ACTAGTGCAGTGTCAAAAACG 57.056 42.857 3.69 0.00 35.62 3.60
5296 10767 4.817517 AGCGTTTATTACACTAGTGCAGT 58.182 39.130 22.90 9.58 38.32 4.40
5297 10768 5.103000 AGAGCGTTTATTACACTAGTGCAG 58.897 41.667 22.90 0.00 0.00 4.41
5298 10769 5.068234 AGAGCGTTTATTACACTAGTGCA 57.932 39.130 22.90 7.33 0.00 4.57
5299 10770 7.695869 ATAAGAGCGTTTATTACACTAGTGC 57.304 36.000 22.90 5.36 0.00 4.40
5304 10775 9.924650 CCCTAATATAAGAGCGTTTATTACACT 57.075 33.333 1.89 0.00 0.00 3.55
5305 10776 9.148104 CCCCTAATATAAGAGCGTTTATTACAC 57.852 37.037 1.89 0.00 0.00 2.90
5306 10777 9.092338 TCCCCTAATATAAGAGCGTTTATTACA 57.908 33.333 1.89 0.00 0.00 2.41
5307 10778 9.363763 GTCCCCTAATATAAGAGCGTTTATTAC 57.636 37.037 1.89 0.00 0.00 1.89
5308 10779 8.246180 CGTCCCCTAATATAAGAGCGTTTATTA 58.754 37.037 1.89 0.00 0.00 0.98
5309 10780 7.095270 CGTCCCCTAATATAAGAGCGTTTATT 58.905 38.462 1.89 0.00 0.00 1.40
5310 10781 6.350780 CCGTCCCCTAATATAAGAGCGTTTAT 60.351 42.308 2.15 2.15 0.00 1.40
5311 10782 5.047802 CCGTCCCCTAATATAAGAGCGTTTA 60.048 44.000 0.00 0.00 0.00 2.01
5312 10783 4.262335 CCGTCCCCTAATATAAGAGCGTTT 60.262 45.833 0.00 0.00 0.00 3.60
5313 10784 3.257624 CCGTCCCCTAATATAAGAGCGTT 59.742 47.826 0.00 0.00 0.00 4.84
5314 10785 2.824341 CCGTCCCCTAATATAAGAGCGT 59.176 50.000 0.00 0.00 0.00 5.07
5315 10786 3.087031 TCCGTCCCCTAATATAAGAGCG 58.913 50.000 0.00 0.00 0.00 5.03
5316 10787 3.447944 CCTCCGTCCCCTAATATAAGAGC 59.552 52.174 0.00 0.00 0.00 4.09
5317 10788 4.024670 CCCTCCGTCCCCTAATATAAGAG 58.975 52.174 0.00 0.00 0.00 2.85
5318 10789 3.664127 TCCCTCCGTCCCCTAATATAAGA 59.336 47.826 0.00 0.00 0.00 2.10
5319 10790 4.024670 CTCCCTCCGTCCCCTAATATAAG 58.975 52.174 0.00 0.00 0.00 1.73
5320 10791 3.403737 ACTCCCTCCGTCCCCTAATATAA 59.596 47.826 0.00 0.00 0.00 0.98
5321 10792 2.998910 ACTCCCTCCGTCCCCTAATATA 59.001 50.000 0.00 0.00 0.00 0.86
5322 10793 1.793902 ACTCCCTCCGTCCCCTAATAT 59.206 52.381 0.00 0.00 0.00 1.28
5323 10794 1.238615 ACTCCCTCCGTCCCCTAATA 58.761 55.000 0.00 0.00 0.00 0.98
5324 10795 1.238615 TACTCCCTCCGTCCCCTAAT 58.761 55.000 0.00 0.00 0.00 1.73
5325 10796 1.133262 CATACTCCCTCCGTCCCCTAA 60.133 57.143 0.00 0.00 0.00 2.69
5326 10797 0.481567 CATACTCCCTCCGTCCCCTA 59.518 60.000 0.00 0.00 0.00 3.53
5327 10798 1.233369 CATACTCCCTCCGTCCCCT 59.767 63.158 0.00 0.00 0.00 4.79
5328 10799 0.690077 AACATACTCCCTCCGTCCCC 60.690 60.000 0.00 0.00 0.00 4.81
5329 10800 0.464452 CAACATACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
5330 10801 1.192428 ACAACATACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
5331 10802 3.022406 ACTACAACATACTCCCTCCGTC 58.978 50.000 0.00 0.00 0.00 4.79
5332 10803 2.758979 CACTACAACATACTCCCTCCGT 59.241 50.000 0.00 0.00 0.00 4.69
5333 10804 2.100916 CCACTACAACATACTCCCTCCG 59.899 54.545 0.00 0.00 0.00 4.63
5334 10805 2.158943 GCCACTACAACATACTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
5335 10806 2.500098 TGCCACTACAACATACTCCCTC 59.500 50.000 0.00 0.00 0.00 4.30
5336 10807 2.546899 TGCCACTACAACATACTCCCT 58.453 47.619 0.00 0.00 0.00 4.20
5337 10808 3.560636 ATGCCACTACAACATACTCCC 57.439 47.619 0.00 0.00 0.00 4.30
5338 10809 5.470098 CCAATATGCCACTACAACATACTCC 59.530 44.000 0.00 0.00 0.00 3.85
5339 10810 6.017934 CACCAATATGCCACTACAACATACTC 60.018 42.308 0.00 0.00 0.00 2.59
5340 10811 5.822519 CACCAATATGCCACTACAACATACT 59.177 40.000 0.00 0.00 0.00 2.12
5341 10812 5.588648 ACACCAATATGCCACTACAACATAC 59.411 40.000 0.00 0.00 0.00 2.39
5342 10813 5.750524 ACACCAATATGCCACTACAACATA 58.249 37.500 0.00 0.00 0.00 2.29
5373 10844 6.152831 AGGAAATACCAAGCACATTTTCCTAC 59.847 38.462 11.88 0.00 46.45 3.18
5415 10886 6.163476 AGCTAAACATCAAATGTAGACGACA 58.837 36.000 0.00 0.00 44.07 4.35
5444 10915 7.437862 TGTTAGCATTTTTCTTCCACATTTCAC 59.562 33.333 0.00 0.00 0.00 3.18
5458 10929 9.926158 TTGATCACATTACATGTTAGCATTTTT 57.074 25.926 2.30 0.00 42.70 1.94
5465 10936 7.495606 TGCCTACTTGATCACATTACATGTTAG 59.504 37.037 2.30 0.00 42.70 2.34
5514 10985 8.695456 ACCTGTTCATTTCTTTTACTGTCAATT 58.305 29.630 0.00 0.00 0.00 2.32
5544 11015 6.380079 AATTGGAGATGGGGTAGATATGAC 57.620 41.667 0.00 0.00 0.00 3.06
5573 11044 4.610945 GGTCAAACAACTTGAAGGACATG 58.389 43.478 0.00 0.00 45.67 3.21
5582 11053 7.789027 ACTTTTAAAAACGGTCAAACAACTTG 58.211 30.769 1.66 0.00 36.25 3.16
5594 11065 4.037089 AGTGGCACCTACTTTTAAAAACGG 59.963 41.667 15.27 5.38 0.00 4.44
5627 11098 6.431198 AGAACAAAGAAGTCGTTAAAAGCA 57.569 33.333 0.00 0.00 0.00 3.91
5768 11348 0.441533 GAGAACTGCAGCATGACACG 59.558 55.000 15.27 0.00 39.69 4.49
5772 11352 2.845363 TCAAGAGAACTGCAGCATGA 57.155 45.000 15.27 3.14 39.69 3.07
5901 11481 4.264253 TGATTACAAGAGGTTGATGCAGG 58.736 43.478 0.00 0.00 37.10 4.85
6028 11608 3.397955 ACACCCATGTCTTCCTTAAACCT 59.602 43.478 0.00 0.00 31.55 3.50
6080 11660 1.063717 CCACATTGGCATACCCCTCTT 60.064 52.381 0.00 0.00 33.59 2.85
6170 11752 5.878332 ATTGTGTCAGCATCAACGATAAA 57.122 34.783 0.00 0.00 0.00 1.40
6175 11757 3.272439 ACAATTGTGTCAGCATCAACG 57.728 42.857 11.07 0.00 29.49 4.10
6267 11941 5.394333 GCAGGAAACTAGGAACGAGTAGAAT 60.394 44.000 0.00 0.00 45.31 2.40
6270 11944 3.429135 GGCAGGAAACTAGGAACGAGTAG 60.429 52.174 0.00 0.00 45.31 2.57
6283 11957 1.452108 CTCATCGGGGGCAGGAAAC 60.452 63.158 0.00 0.00 0.00 2.78
6285 11959 2.539277 TACCTCATCGGGGGCAGGAA 62.539 60.000 0.00 0.00 36.97 3.36
6286 11960 2.326529 ATACCTCATCGGGGGCAGGA 62.327 60.000 0.00 0.00 36.97 3.86
6287 11961 1.418908 AATACCTCATCGGGGGCAGG 61.419 60.000 0.00 0.00 36.97 4.85
6288 11962 0.474184 AAATACCTCATCGGGGGCAG 59.526 55.000 0.00 0.00 36.97 4.85
6289 11963 1.697432 CTAAATACCTCATCGGGGGCA 59.303 52.381 0.00 0.00 36.97 5.36
6290 11964 1.610886 GCTAAATACCTCATCGGGGGC 60.611 57.143 0.00 0.00 36.97 5.80
6291 11965 1.978580 AGCTAAATACCTCATCGGGGG 59.021 52.381 0.00 0.00 36.97 5.40
6292 11966 2.632996 TGAGCTAAATACCTCATCGGGG 59.367 50.000 0.00 0.00 36.97 5.73
6349 12023 0.537188 AACCTGCTATCACTGTCCCG 59.463 55.000 0.00 0.00 0.00 5.14
6367 12041 0.843309 TCTGCACTTCCTCACCCAAA 59.157 50.000 0.00 0.00 0.00 3.28
6383 12057 1.088306 AGGTTCGTCTCGCTAGTCTG 58.912 55.000 0.00 0.00 0.00 3.51
6420 12094 5.806286 TCGTGTTTAAGCAAGAACAAGAAG 58.194 37.500 5.52 1.59 39.87 2.85
6421 12095 5.583061 TCTCGTGTTTAAGCAAGAACAAGAA 59.417 36.000 9.02 5.33 41.36 2.52
6422 12096 5.006358 GTCTCGTGTTTAAGCAAGAACAAGA 59.994 40.000 9.02 11.73 40.30 3.02
6457 12149 5.637810 CGTGGTGTTATATAGGGTATGCTTG 59.362 44.000 0.00 0.00 0.00 4.01
6458 12150 5.541101 TCGTGGTGTTATATAGGGTATGCTT 59.459 40.000 0.00 0.00 0.00 3.91
6459 12151 5.081728 TCGTGGTGTTATATAGGGTATGCT 58.918 41.667 0.00 0.00 0.00 3.79
6460 12152 5.395682 TCGTGGTGTTATATAGGGTATGC 57.604 43.478 0.00 0.00 0.00 3.14
6461 12153 7.211573 TGTTTCGTGGTGTTATATAGGGTATG 58.788 38.462 0.00 0.00 0.00 2.39
6462 12154 7.364149 TGTTTCGTGGTGTTATATAGGGTAT 57.636 36.000 0.00 0.00 0.00 2.73
6463 12155 6.788598 TGTTTCGTGGTGTTATATAGGGTA 57.211 37.500 0.00 0.00 0.00 3.69
6464 12156 5.680594 TGTTTCGTGGTGTTATATAGGGT 57.319 39.130 0.00 0.00 0.00 4.34
6465 12157 6.202188 GTCATGTTTCGTGGTGTTATATAGGG 59.798 42.308 0.00 0.00 0.00 3.53
6466 12158 6.074516 CGTCATGTTTCGTGGTGTTATATAGG 60.075 42.308 0.00 0.00 0.00 2.57
6467 12159 6.693978 TCGTCATGTTTCGTGGTGTTATATAG 59.306 38.462 0.00 0.00 0.00 1.31
6468 12160 6.562518 TCGTCATGTTTCGTGGTGTTATATA 58.437 36.000 0.00 0.00 0.00 0.86
6469 12161 5.412640 TCGTCATGTTTCGTGGTGTTATAT 58.587 37.500 0.00 0.00 0.00 0.86
6470 12162 4.807443 TCGTCATGTTTCGTGGTGTTATA 58.193 39.130 0.00 0.00 0.00 0.98
6471 12163 3.655486 TCGTCATGTTTCGTGGTGTTAT 58.345 40.909 0.00 0.00 0.00 1.89
6569 12261 2.046507 GCAGAGAGCTGGTGTGGG 60.047 66.667 0.00 0.00 42.53 4.61
6784 12520 5.935789 AGAGGAGATATGCTCGAACTAGTAC 59.064 44.000 3.02 0.00 44.91 2.73
6785 12521 6.014070 AGAGAGGAGATATGCTCGAACTAGTA 60.014 42.308 3.02 0.00 44.91 1.82
6786 12522 4.980573 AGAGGAGATATGCTCGAACTAGT 58.019 43.478 3.02 0.00 44.91 2.57
6787 12523 5.245531 AGAGAGGAGATATGCTCGAACTAG 58.754 45.833 3.02 0.00 44.91 2.57
6792 12528 4.071423 CAGAAGAGAGGAGATATGCTCGA 58.929 47.826 3.02 0.00 44.91 4.04
6805 12541 2.735663 GTGTGCACATGTCAGAAGAGAG 59.264 50.000 24.69 0.00 0.00 3.20
6934 12670 0.038744 AGTGGAGGGAACTTGGCATG 59.961 55.000 0.00 0.00 44.43 4.06
6936 12672 0.690762 GTAGTGGAGGGAACTTGGCA 59.309 55.000 0.00 0.00 44.43 4.92
6945 12681 4.514577 CGCGCTGGTAGTGGAGGG 62.515 72.222 5.56 0.00 0.00 4.30
7036 12775 2.748461 TTTGAGAACGGTTGCTTTCG 57.252 45.000 0.00 0.00 0.00 3.46
7065 12804 4.222114 CGTGAAAAATCTGCTCTGGTTTC 58.778 43.478 0.00 0.00 0.00 2.78
7066 12821 3.550842 GCGTGAAAAATCTGCTCTGGTTT 60.551 43.478 0.00 0.00 0.00 3.27
7070 12825 1.536766 TGGCGTGAAAAATCTGCTCTG 59.463 47.619 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.