Multiple sequence alignment - TraesCS2D01G136600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G136600 chr2D 100.000 4785 0 0 1 4785 80102370 80107154 0.000000e+00 8837.0
1 TraesCS2D01G136600 chr2D 97.368 38 0 1 4586 4622 80106862 80106899 4.000000e-06 63.9
2 TraesCS2D01G136600 chr2D 97.368 38 0 1 4493 4530 80106955 80106991 4.000000e-06 63.9
3 TraesCS2D01G136600 chr2A 90.013 4586 233 84 1 4494 80842457 80846909 0.000000e+00 5723.0
4 TraesCS2D01G136600 chr2A 94.872 78 4 0 4708 4785 80846915 80846992 6.500000e-24 122.0
5 TraesCS2D01G136600 chr2B 90.323 2728 146 48 1819 4501 131596532 131593878 0.000000e+00 3467.0
6 TraesCS2D01G136600 chr2B 90.044 1828 121 40 1 1786 131598343 131596535 0.000000e+00 2311.0
7 TraesCS2D01G136600 chr6D 83.333 114 18 1 1198 1311 15855268 15855380 2.360000e-18 104.0
8 TraesCS2D01G136600 chr6B 83.333 114 18 1 1198 1311 27886765 27886877 2.360000e-18 104.0
9 TraesCS2D01G136600 chr1D 87.179 78 9 1 4708 4785 87906709 87906785 2.370000e-13 87.9
10 TraesCS2D01G136600 chr3A 85.185 81 10 2 4706 4785 717992795 717992874 1.100000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G136600 chr2D 80102370 80107154 4784 False 2988.266667 8837 98.245333 1 4785 3 chr2D.!!$F1 4784
1 TraesCS2D01G136600 chr2A 80842457 80846992 4535 False 2922.500000 5723 92.442500 1 4785 2 chr2A.!!$F1 4784
2 TraesCS2D01G136600 chr2B 131593878 131598343 4465 True 2889.000000 3467 90.183500 1 4501 2 chr2B.!!$R1 4500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 803 0.249911 GATACGTAGGCAAGGCAGGG 60.250 60.000 0.08 0.0 0.00 4.45 F
1140 1199 0.371989 TTCTGTGTTGTTCGCGTGTG 59.628 50.000 5.77 0.0 0.00 3.82 F
1142 1201 0.586256 CTGTGTTGTTCGCGTGTGTG 60.586 55.000 5.77 0.0 0.00 3.82 F
2264 2383 1.063717 CCTCCTACTACCCGTTACCCA 60.064 57.143 0.00 0.0 0.00 4.51 F
3275 3394 0.036952 CGAAGCTTTCCTGCTCCTCA 60.037 55.000 0.00 0.0 43.24 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 2824 0.176680 CCGATGGAGAAGACCACCAG 59.823 60.0 0.00 0.0 43.03 4.00 R
2857 2976 1.118965 ACCACACGGAGATCCACACA 61.119 55.0 0.00 0.0 35.59 3.72 R
3267 3386 1.499368 TATGCATGGACTGAGGAGCA 58.501 50.0 10.16 0.0 36.34 4.26 R
3340 3469 0.179215 CCGCAATCTGCTCGACAAAC 60.179 55.0 0.00 0.0 42.25 2.93 R
4564 4738 0.179078 CCCAGCAAGCAAGCAAACAA 60.179 50.0 3.19 0.0 36.85 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 104 1.985159 TGTCCCTAGTGATTGCACCTT 59.015 47.619 0.00 0.00 46.32 3.50
255 259 2.908940 CCCATGCCATCCGAAGCC 60.909 66.667 0.00 0.00 0.00 4.35
277 281 4.201851 CCGCATTGTTTCTTGGACTAGATG 60.202 45.833 0.00 0.00 0.00 2.90
279 283 4.728882 GCATTGTTTCTTGGACTAGATGCG 60.729 45.833 0.00 0.00 0.00 4.73
285 289 0.392461 TTGGACTAGATGCGCCCAAC 60.392 55.000 4.18 0.00 32.51 3.77
306 310 9.498098 CCCAACAAGGTACATTGGCTATTTAGC 62.498 44.444 22.90 0.80 41.38 3.09
458 465 4.717188 GACTTTGCAGTCTATATTCCGC 57.283 45.455 0.00 0.00 45.54 5.54
486 493 3.959535 ATGCCAAAATGTCGATGGTTT 57.040 38.095 4.04 0.00 36.57 3.27
490 497 3.184178 GCCAAAATGTCGATGGTTTGTTG 59.816 43.478 13.32 2.98 36.57 3.33
492 499 5.229423 CCAAAATGTCGATGGTTTGTTGAT 58.771 37.500 13.32 0.00 30.61 2.57
500 507 4.940654 TCGATGGTTTGTTGATAGATGCAA 59.059 37.500 0.00 0.00 0.00 4.08
508 515 9.585099 GGTTTGTTGATAGATGCAATAAATTCA 57.415 29.630 0.00 0.00 38.17 2.57
776 796 2.278989 GCCGCGATACGTAGGCAA 60.279 61.111 16.37 0.00 45.87 4.52
778 798 1.660575 CCGCGATACGTAGGCAAGG 60.661 63.158 8.23 10.23 41.42 3.61
779 799 2.300787 CGCGATACGTAGGCAAGGC 61.301 63.158 18.07 7.07 36.87 4.35
780 800 1.227147 GCGATACGTAGGCAAGGCA 60.227 57.895 14.48 0.00 0.00 4.75
782 802 0.597637 CGATACGTAGGCAAGGCAGG 60.598 60.000 0.08 0.00 0.00 4.85
783 803 0.249911 GATACGTAGGCAAGGCAGGG 60.250 60.000 0.08 0.00 0.00 4.45
785 805 4.101448 CGTAGGCAAGGCAGGGCT 62.101 66.667 9.30 9.30 44.15 5.19
787 807 3.411517 TAGGCAAGGCAGGGCTCC 61.412 66.667 7.73 0.00 41.81 4.70
840 861 2.370445 ACAGATTGGGCTCCCCTCG 61.370 63.158 1.89 0.21 45.70 4.63
853 874 4.244802 CCTCGCGCCGTCTCTCTC 62.245 72.222 0.00 0.00 0.00 3.20
854 875 3.199190 CTCGCGCCGTCTCTCTCT 61.199 66.667 0.00 0.00 0.00 3.10
866 903 0.738389 CTCTCTCTCTCTCGCCAACC 59.262 60.000 0.00 0.00 0.00 3.77
1039 1088 1.142474 CGCCGTACGTTTCTTCCTTT 58.858 50.000 15.21 0.00 36.87 3.11
1043 1092 3.249320 GCCGTACGTTTCTTCCTTTCTTT 59.751 43.478 15.21 0.00 0.00 2.52
1044 1093 4.610007 GCCGTACGTTTCTTCCTTTCTTTC 60.610 45.833 15.21 0.00 0.00 2.62
1046 1095 5.235831 CCGTACGTTTCTTCCTTTCTTTCTT 59.764 40.000 15.21 0.00 0.00 2.52
1048 1097 6.019318 CGTACGTTTCTTCCTTTCTTTCTTCA 60.019 38.462 7.22 0.00 0.00 3.02
1050 1099 5.198274 CGTTTCTTCCTTTCTTTCTTCACG 58.802 41.667 0.00 0.00 0.00 4.35
1052 1101 3.139077 TCTTCCTTTCTTTCTTCACGCC 58.861 45.455 0.00 0.00 0.00 5.68
1053 1102 1.892209 TCCTTTCTTTCTTCACGCCC 58.108 50.000 0.00 0.00 0.00 6.13
1054 1103 0.881796 CCTTTCTTTCTTCACGCCCC 59.118 55.000 0.00 0.00 0.00 5.80
1105 1154 2.816520 GATACGCCGCCGGTTGTT 60.817 61.111 4.45 0.00 39.22 2.83
1124 1173 3.696051 TGTTTCTGAGTTTGCTTGCTTCT 59.304 39.130 0.00 0.00 0.00 2.85
1140 1199 0.371989 TTCTGTGTTGTTCGCGTGTG 59.628 50.000 5.77 0.00 0.00 3.82
1141 1200 0.738063 TCTGTGTTGTTCGCGTGTGT 60.738 50.000 5.77 0.00 0.00 3.72
1142 1201 0.586256 CTGTGTTGTTCGCGTGTGTG 60.586 55.000 5.77 0.00 0.00 3.82
1143 1202 1.932564 GTGTTGTTCGCGTGTGTGC 60.933 57.895 5.77 0.00 0.00 4.57
1243 1302 4.451150 TGGTCATGGACGAGCCGC 62.451 66.667 0.00 0.00 40.66 6.53
1405 1467 1.774894 GCAGACCCCACCACAGGTAA 61.775 60.000 0.00 0.00 36.17 2.85
1539 1603 3.492337 AGATAGGCTCCGGTCTTTCTAG 58.508 50.000 0.00 0.00 34.59 2.43
1630 1712 5.116882 GCGAGTACTCCCACAATAATTTCT 58.883 41.667 17.23 0.00 0.00 2.52
1642 1725 6.404074 CCACAATAATTTCTCTTGCCACTCTC 60.404 42.308 0.00 0.00 0.00 3.20
1710 1793 3.531262 ACTTGACATTTTCGCGTAACC 57.469 42.857 5.77 0.00 0.00 2.85
1790 1879 4.080807 TCCAGACAAAGTCTTGGTTGTGTA 60.081 41.667 0.00 0.00 41.37 2.90
1794 1883 5.354234 AGACAAAGTCTTGGTTGTGTACTTG 59.646 40.000 0.00 0.00 40.28 3.16
1806 1895 4.739587 TGTGTACTTGTGGTTGTACTCA 57.260 40.909 0.00 0.00 39.34 3.41
1933 2031 6.792326 TCGATTAGTGTGTTATCACTGTAGG 58.208 40.000 9.21 0.00 46.36 3.18
1963 2061 6.869913 CAGCAACAACCAAATAATTCATCACT 59.130 34.615 0.00 0.00 0.00 3.41
1967 2065 9.079833 CAACAACCAAATAATTCATCACTGATC 57.920 33.333 0.00 0.00 0.00 2.92
1969 2067 7.336679 ACAACCAAATAATTCATCACTGATCGA 59.663 33.333 0.00 0.00 0.00 3.59
2000 2100 2.226962 ACAAGCTCAAATGCCCATCT 57.773 45.000 0.00 0.00 0.00 2.90
2002 2102 2.901839 ACAAGCTCAAATGCCCATCTTT 59.098 40.909 0.00 0.00 0.00 2.52
2010 2114 5.437060 TCAAATGCCCATCTTTCTACCTAC 58.563 41.667 0.00 0.00 0.00 3.18
2076 2183 6.470877 TGTTTGAGACGATTTGTTTTTGCTAC 59.529 34.615 0.00 0.00 0.00 3.58
2135 2245 4.081406 TCTACTCACGGGTAACTTAAGCA 58.919 43.478 1.29 0.00 0.00 3.91
2200 2318 4.107586 CGAATCGAATCGAATCTTGGTG 57.892 45.455 17.84 0.00 45.48 4.17
2252 2371 2.525284 TAGGCGCCCAACCTCCTACT 62.525 60.000 26.15 1.43 38.81 2.57
2253 2372 2.062177 GGCGCCCAACCTCCTACTA 61.062 63.158 18.11 0.00 0.00 1.82
2254 2373 1.143401 GCGCCCAACCTCCTACTAC 59.857 63.158 0.00 0.00 0.00 2.73
2261 2380 2.428530 CCAACCTCCTACTACCCGTTAC 59.571 54.545 0.00 0.00 0.00 2.50
2264 2383 1.063717 CCTCCTACTACCCGTTACCCA 60.064 57.143 0.00 0.00 0.00 4.51
2317 2436 5.422214 AATCCAACTGGTCTCGAGTTAAT 57.578 39.130 13.13 0.00 32.27 1.40
2359 2478 1.300697 ACTGGCGTCGTTGAACTCC 60.301 57.895 0.00 0.00 0.00 3.85
2824 2943 2.040544 CAAGTTCCGCGGCCTCAAT 61.041 57.895 23.51 0.00 0.00 2.57
3275 3394 0.036952 CGAAGCTTTCCTGCTCCTCA 60.037 55.000 0.00 0.00 43.24 3.86
3276 3395 1.736612 GAAGCTTTCCTGCTCCTCAG 58.263 55.000 0.00 0.00 43.24 3.35
3277 3396 1.003003 GAAGCTTTCCTGCTCCTCAGT 59.997 52.381 0.00 0.00 43.24 3.41
3278 3397 0.612744 AGCTTTCCTGCTCCTCAGTC 59.387 55.000 0.00 0.00 39.34 3.51
3280 3399 0.979665 CTTTCCTGCTCCTCAGTCCA 59.020 55.000 0.00 0.00 41.25 4.02
3282 3401 0.907486 TTCCTGCTCCTCAGTCCATG 59.093 55.000 0.00 0.00 41.25 3.66
3285 3404 0.180642 CTGCTCCTCAGTCCATGCAT 59.819 55.000 0.00 0.00 38.02 3.96
3295 3424 4.482990 TCAGTCCATGCATATCCTCTGTA 58.517 43.478 0.00 0.00 0.00 2.74
3311 3440 5.304614 TCCTCTGTACTGACAAGCTTAGTTT 59.695 40.000 5.71 0.00 34.35 2.66
3312 3441 5.406780 CCTCTGTACTGACAAGCTTAGTTTG 59.593 44.000 7.26 7.26 34.35 2.93
3313 3442 5.914033 TCTGTACTGACAAGCTTAGTTTGT 58.086 37.500 14.01 14.01 39.51 2.83
3326 3455 5.246203 AGCTTAGTTTGTCTGACTATGGTGA 59.754 40.000 9.51 0.00 35.49 4.02
3327 3456 6.070538 AGCTTAGTTTGTCTGACTATGGTGAT 60.071 38.462 9.51 0.00 35.49 3.06
3329 3458 7.201565 GCTTAGTTTGTCTGACTATGGTGATTC 60.202 40.741 9.51 0.00 30.30 2.52
3330 3459 5.171476 AGTTTGTCTGACTATGGTGATTCG 58.829 41.667 9.51 0.00 0.00 3.34
3331 3460 4.801330 TTGTCTGACTATGGTGATTCGT 57.199 40.909 9.51 0.00 0.00 3.85
3332 3461 4.801330 TGTCTGACTATGGTGATTCGTT 57.199 40.909 9.51 0.00 0.00 3.85
3333 3462 5.147330 TGTCTGACTATGGTGATTCGTTT 57.853 39.130 9.51 0.00 0.00 3.60
3334 3463 6.275494 TGTCTGACTATGGTGATTCGTTTA 57.725 37.500 9.51 0.00 0.00 2.01
3335 3464 6.873997 TGTCTGACTATGGTGATTCGTTTAT 58.126 36.000 9.51 0.00 0.00 1.40
3336 3465 6.756542 TGTCTGACTATGGTGATTCGTTTATG 59.243 38.462 9.51 0.00 0.00 1.90
3338 3467 7.277981 GTCTGACTATGGTGATTCGTTTATGTT 59.722 37.037 0.00 0.00 0.00 2.71
3340 3469 6.315144 TGACTATGGTGATTCGTTTATGTTGG 59.685 38.462 0.00 0.00 0.00 3.77
3341 3470 6.177610 ACTATGGTGATTCGTTTATGTTGGT 58.822 36.000 0.00 0.00 0.00 3.67
3342 3471 5.975693 ATGGTGATTCGTTTATGTTGGTT 57.024 34.783 0.00 0.00 0.00 3.67
3343 3472 5.776173 TGGTGATTCGTTTATGTTGGTTT 57.224 34.783 0.00 0.00 0.00 3.27
3344 3473 5.524284 TGGTGATTCGTTTATGTTGGTTTG 58.476 37.500 0.00 0.00 0.00 2.93
3345 3474 5.067936 TGGTGATTCGTTTATGTTGGTTTGT 59.932 36.000 0.00 0.00 0.00 2.83
3346 3475 5.627780 GGTGATTCGTTTATGTTGGTTTGTC 59.372 40.000 0.00 0.00 0.00 3.18
3347 3476 5.338559 GTGATTCGTTTATGTTGGTTTGTCG 59.661 40.000 0.00 0.00 0.00 4.35
3348 3477 5.236695 TGATTCGTTTATGTTGGTTTGTCGA 59.763 36.000 0.00 0.00 0.00 4.20
3355 3484 2.571212 TGTTGGTTTGTCGAGCAGATT 58.429 42.857 0.00 0.00 0.00 2.40
3367 3496 3.925238 CAGATTGCGGCGTACGGC 61.925 66.667 29.97 29.97 44.51 5.68
3475 3604 1.374758 CTCGGTGTGCTTCCTGACC 60.375 63.158 0.00 0.00 0.00 4.02
3553 3682 1.596752 CAAGCACTACACGGCCACA 60.597 57.895 2.24 0.00 0.00 4.17
3659 3788 3.766691 GCTACGCCGAGAACCCCA 61.767 66.667 0.00 0.00 0.00 4.96
3661 3790 3.072468 TACGCCGAGAACCCCAGG 61.072 66.667 0.00 0.00 0.00 4.45
3933 4068 2.010817 CGCGTGAAAGCAAGGCAAC 61.011 57.895 0.00 0.00 36.85 4.17
3934 4069 1.661509 GCGTGAAAGCAAGGCAACC 60.662 57.895 0.00 0.00 37.05 3.77
3937 4072 1.152860 TGAAAGCAAGGCAACCGGA 60.153 52.632 9.46 0.00 37.17 5.14
3990 4125 1.151777 CCATGCGGCGAATCGTAGTT 61.152 55.000 12.98 0.00 0.00 2.24
4000 4135 1.584308 GAATCGTAGTTCTCACGCTGC 59.416 52.381 0.00 0.00 39.23 5.25
4005 4140 1.934220 TAGTTCTCACGCTGCCGAGG 61.934 60.000 12.27 0.00 38.29 4.63
4011 4146 2.107141 ACGCTGCCGAGGCTTATC 59.893 61.111 15.75 1.19 42.51 1.75
4016 4151 0.318275 CTGCCGAGGCTTATCGACTC 60.318 60.000 15.75 0.00 45.56 3.36
4039 4174 2.353208 GGAGCACGAGTTGATGTTCTCT 60.353 50.000 0.00 0.00 0.00 3.10
4040 4175 3.321497 GAGCACGAGTTGATGTTCTCTT 58.679 45.455 0.00 0.00 0.00 2.85
4058 4193 9.698309 TGTTCTCTTCTCTTGTGTCTAAAATAG 57.302 33.333 0.00 0.00 0.00 1.73
4059 4194 9.145865 GTTCTCTTCTCTTGTGTCTAAAATAGG 57.854 37.037 0.00 0.00 0.00 2.57
4060 4195 7.841956 TCTCTTCTCTTGTGTCTAAAATAGGG 58.158 38.462 0.00 0.00 0.00 3.53
4061 4196 7.674348 TCTCTTCTCTTGTGTCTAAAATAGGGA 59.326 37.037 0.00 0.00 0.00 4.20
4062 4197 7.612677 TCTTCTCTTGTGTCTAAAATAGGGAC 58.387 38.462 0.00 0.00 0.00 4.46
4089 4224 2.158726 AGGGCCAACTCTTTTTGACGTA 60.159 45.455 6.18 0.00 0.00 3.57
4090 4225 2.225727 GGGCCAACTCTTTTTGACGTAG 59.774 50.000 4.39 0.00 0.00 3.51
4141 4278 6.261118 GCAATGTTTCTCAGCTGTTATTAGG 58.739 40.000 14.67 0.00 0.00 2.69
4185 4338 7.765695 TTTCATCTTTCAGGTCTAGCAAAAT 57.234 32.000 0.00 0.00 0.00 1.82
4186 4339 7.765695 TTCATCTTTCAGGTCTAGCAAAATT 57.234 32.000 0.00 0.00 0.00 1.82
4192 4345 5.947228 TCAGGTCTAGCAAAATTTGTCAG 57.053 39.130 7.60 5.19 0.00 3.51
4193 4346 5.620206 TCAGGTCTAGCAAAATTTGTCAGA 58.380 37.500 7.60 7.32 0.00 3.27
4200 4353 8.078596 GTCTAGCAAAATTTGTCAGAGTGATTT 58.921 33.333 7.60 0.00 0.00 2.17
4201 4354 8.632679 TCTAGCAAAATTTGTCAGAGTGATTTT 58.367 29.630 7.60 0.00 31.99 1.82
4211 4364 5.412594 TGTCAGAGTGATTTTACAAGGATGC 59.587 40.000 0.00 0.00 0.00 3.91
4272 4425 2.885135 TTCATGAGATGGCAAGTGGT 57.115 45.000 0.00 0.00 0.00 4.16
4273 4426 2.118313 TCATGAGATGGCAAGTGGTG 57.882 50.000 0.00 0.00 0.00 4.17
4283 4436 3.216292 AAGTGGTGCCGGTGTTGC 61.216 61.111 1.90 0.00 0.00 4.17
4304 4457 3.057033 GCCTGATCTTTGTTGTGATGCTT 60.057 43.478 0.00 0.00 0.00 3.91
4305 4458 4.156556 GCCTGATCTTTGTTGTGATGCTTA 59.843 41.667 0.00 0.00 0.00 3.09
4306 4459 5.335897 GCCTGATCTTTGTTGTGATGCTTAA 60.336 40.000 0.00 0.00 0.00 1.85
4308 4461 6.149973 CCTGATCTTTGTTGTGATGCTTAAGA 59.850 38.462 6.67 0.00 0.00 2.10
4314 4479 6.985188 TTGTTGTGATGCTTAAGAGTATCC 57.015 37.500 6.67 2.56 42.37 2.59
4327 4492 7.492994 GCTTAAGAGTATCCGAAATTCTGAACT 59.507 37.037 6.67 0.00 33.66 3.01
4343 4508 6.058553 TCTGAACTGAACATGATGAGGAAT 57.941 37.500 0.00 0.00 0.00 3.01
4351 4516 2.239654 ACATGATGAGGAATTGGACCGT 59.760 45.455 0.00 0.00 0.00 4.83
4400 4574 5.645067 TGAAATTCTGAACAGAGCATGGTAG 59.355 40.000 0.00 0.00 38.88 3.18
4414 4588 0.834261 TGGTAGTGCAGCCACCAGTA 60.834 55.000 9.39 0.00 43.09 2.74
4447 4621 3.684788 GTGAGTGGCATTAACGATTCTGT 59.315 43.478 0.00 0.00 0.00 3.41
4508 4682 2.073252 AGCGGTAGGTGAGATGATCA 57.927 50.000 0.00 0.00 34.79 2.92
4509 4683 2.603021 AGCGGTAGGTGAGATGATCAT 58.397 47.619 8.25 8.25 40.92 2.45
4510 4684 2.298446 AGCGGTAGGTGAGATGATCATG 59.702 50.000 14.30 0.00 40.92 3.07
4511 4685 2.036475 GCGGTAGGTGAGATGATCATGT 59.964 50.000 14.30 9.47 40.92 3.21
4512 4686 3.646946 CGGTAGGTGAGATGATCATGTG 58.353 50.000 14.30 0.00 40.92 3.21
4513 4687 3.319122 CGGTAGGTGAGATGATCATGTGA 59.681 47.826 14.30 0.00 40.92 3.58
4514 4688 4.202151 CGGTAGGTGAGATGATCATGTGAA 60.202 45.833 14.30 0.00 40.92 3.18
4515 4689 5.674525 GGTAGGTGAGATGATCATGTGAAA 58.325 41.667 14.30 0.00 40.92 2.69
4516 4690 6.115446 GGTAGGTGAGATGATCATGTGAAAA 58.885 40.000 14.30 0.00 40.92 2.29
4517 4691 6.599244 GGTAGGTGAGATGATCATGTGAAAAA 59.401 38.462 14.30 0.00 40.92 1.94
4540 4714 8.871686 AAAAGAAACCAGTACAAAGCTAATTG 57.128 30.769 0.00 0.00 36.37 2.32
4541 4715 7.582667 AAGAAACCAGTACAAAGCTAATTGT 57.417 32.000 8.74 8.74 45.14 2.71
4542 4716 7.203255 AGAAACCAGTACAAAGCTAATTGTC 57.797 36.000 7.05 1.01 42.33 3.18
4543 4717 6.770785 AGAAACCAGTACAAAGCTAATTGTCA 59.229 34.615 7.05 0.00 42.33 3.58
4544 4718 5.941948 ACCAGTACAAAGCTAATTGTCAC 57.058 39.130 7.05 5.31 42.33 3.67
4545 4719 4.451096 ACCAGTACAAAGCTAATTGTCACG 59.549 41.667 7.05 0.00 42.33 4.35
4546 4720 4.451096 CCAGTACAAAGCTAATTGTCACGT 59.549 41.667 7.05 0.00 42.33 4.49
4547 4721 5.389516 CCAGTACAAAGCTAATTGTCACGTC 60.390 44.000 7.05 0.00 42.33 4.34
4548 4722 5.405571 CAGTACAAAGCTAATTGTCACGTCT 59.594 40.000 7.05 0.00 42.33 4.18
4549 4723 6.584942 CAGTACAAAGCTAATTGTCACGTCTA 59.415 38.462 7.05 0.00 42.33 2.59
4550 4724 6.807230 AGTACAAAGCTAATTGTCACGTCTAG 59.193 38.462 7.05 0.00 42.33 2.43
4551 4725 5.779922 ACAAAGCTAATTGTCACGTCTAGA 58.220 37.500 0.00 0.00 39.23 2.43
4552 4726 6.220930 ACAAAGCTAATTGTCACGTCTAGAA 58.779 36.000 0.00 0.00 39.23 2.10
4553 4727 6.704493 ACAAAGCTAATTGTCACGTCTAGAAA 59.296 34.615 0.00 0.00 39.23 2.52
4554 4728 7.225931 ACAAAGCTAATTGTCACGTCTAGAAAA 59.774 33.333 0.00 0.00 39.23 2.29
4555 4729 6.952935 AGCTAATTGTCACGTCTAGAAAAG 57.047 37.500 0.00 0.00 0.00 2.27
4556 4730 6.688578 AGCTAATTGTCACGTCTAGAAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
4557 4731 7.324178 AGCTAATTGTCACGTCTAGAAAAGAT 58.676 34.615 0.00 0.00 36.36 2.40
4558 4732 7.819900 AGCTAATTGTCACGTCTAGAAAAGATT 59.180 33.333 0.00 0.00 36.36 2.40
4559 4733 8.443937 GCTAATTGTCACGTCTAGAAAAGATTT 58.556 33.333 0.00 0.00 36.36 2.17
4560 4734 9.746711 CTAATTGTCACGTCTAGAAAAGATTTG 57.253 33.333 0.00 0.00 36.36 2.32
4561 4735 6.539649 TTGTCACGTCTAGAAAAGATTTGG 57.460 37.500 0.00 0.00 36.36 3.28
4562 4736 5.607477 TGTCACGTCTAGAAAAGATTTGGT 58.393 37.500 0.00 0.00 36.36 3.67
4563 4737 6.053005 TGTCACGTCTAGAAAAGATTTGGTT 58.947 36.000 0.00 0.00 36.36 3.67
4564 4738 6.540914 TGTCACGTCTAGAAAAGATTTGGTTT 59.459 34.615 0.00 0.00 36.36 3.27
4565 4739 7.066525 TGTCACGTCTAGAAAAGATTTGGTTTT 59.933 33.333 0.00 0.00 36.36 2.43
4566 4740 7.376072 GTCACGTCTAGAAAAGATTTGGTTTTG 59.624 37.037 0.00 0.00 36.36 2.44
4567 4741 7.066525 TCACGTCTAGAAAAGATTTGGTTTTGT 59.933 33.333 0.00 0.00 36.36 2.83
4568 4742 7.700656 CACGTCTAGAAAAGATTTGGTTTTGTT 59.299 33.333 0.00 0.00 36.36 2.83
4569 4743 8.248253 ACGTCTAGAAAAGATTTGGTTTTGTTT 58.752 29.630 0.00 0.00 36.36 2.83
4570 4744 8.531530 CGTCTAGAAAAGATTTGGTTTTGTTTG 58.468 33.333 0.00 0.00 36.36 2.93
4571 4745 8.328146 GTCTAGAAAAGATTTGGTTTTGTTTGC 58.672 33.333 0.00 0.00 36.36 3.68
4572 4746 8.257306 TCTAGAAAAGATTTGGTTTTGTTTGCT 58.743 29.630 0.00 0.00 0.00 3.91
4573 4747 7.686438 AGAAAAGATTTGGTTTTGTTTGCTT 57.314 28.000 0.00 0.00 0.00 3.91
4574 4748 7.529158 AGAAAAGATTTGGTTTTGTTTGCTTG 58.471 30.769 0.00 0.00 0.00 4.01
4575 4749 4.880886 AGATTTGGTTTTGTTTGCTTGC 57.119 36.364 0.00 0.00 0.00 4.01
4576 4750 4.516323 AGATTTGGTTTTGTTTGCTTGCT 58.484 34.783 0.00 0.00 0.00 3.91
4577 4751 4.943093 AGATTTGGTTTTGTTTGCTTGCTT 59.057 33.333 0.00 0.00 0.00 3.91
4578 4752 4.416505 TTTGGTTTTGTTTGCTTGCTTG 57.583 36.364 0.00 0.00 0.00 4.01
4579 4753 1.736681 TGGTTTTGTTTGCTTGCTTGC 59.263 42.857 0.00 0.00 0.00 4.01
4580 4754 2.009051 GGTTTTGTTTGCTTGCTTGCT 58.991 42.857 3.47 0.00 0.00 3.91
4581 4755 2.223089 GGTTTTGTTTGCTTGCTTGCTG 60.223 45.455 3.47 0.00 0.00 4.41
4582 4756 1.654317 TTTGTTTGCTTGCTTGCTGG 58.346 45.000 3.47 0.00 0.00 4.85
4583 4757 0.179078 TTGTTTGCTTGCTTGCTGGG 60.179 50.000 3.47 0.00 0.00 4.45
4584 4758 1.301165 GTTTGCTTGCTTGCTGGGG 60.301 57.895 3.47 0.00 0.00 4.96
4585 4759 2.509651 TTTGCTTGCTTGCTGGGGG 61.510 57.895 3.47 0.00 0.00 5.40
4600 4774 2.620234 GGGGGTGGTGAGATGATCA 58.380 57.895 0.00 0.00 34.79 2.92
4601 4775 1.143813 GGGGGTGGTGAGATGATCAT 58.856 55.000 8.25 8.25 40.92 2.45
4602 4776 1.202855 GGGGGTGGTGAGATGATCATG 60.203 57.143 14.30 0.00 40.92 3.07
4603 4777 1.492176 GGGGTGGTGAGATGATCATGT 59.508 52.381 14.30 9.47 40.92 3.21
4604 4778 2.569059 GGGTGGTGAGATGATCATGTG 58.431 52.381 14.30 0.00 40.92 3.21
4605 4779 2.171237 GGGTGGTGAGATGATCATGTGA 59.829 50.000 14.30 0.00 40.92 3.58
4606 4780 3.370846 GGGTGGTGAGATGATCATGTGAA 60.371 47.826 14.30 0.00 40.92 3.18
4607 4781 4.264253 GGTGGTGAGATGATCATGTGAAA 58.736 43.478 14.30 0.00 40.92 2.69
4608 4782 4.701651 GGTGGTGAGATGATCATGTGAAAA 59.298 41.667 14.30 0.00 40.92 2.29
4609 4783 5.183713 GGTGGTGAGATGATCATGTGAAAAA 59.816 40.000 14.30 0.00 40.92 1.94
4630 4804 7.949690 AAAAAGAAACCAGTACTACCAAACT 57.050 32.000 0.00 0.00 0.00 2.66
4631 4805 7.563888 AAAAGAAACCAGTACTACCAAACTC 57.436 36.000 0.00 0.00 0.00 3.01
4632 4806 5.881923 AGAAACCAGTACTACCAAACTCA 57.118 39.130 0.00 0.00 0.00 3.41
4633 4807 5.608449 AGAAACCAGTACTACCAAACTCAC 58.392 41.667 0.00 0.00 0.00 3.51
4634 4808 5.365895 AGAAACCAGTACTACCAAACTCACT 59.634 40.000 0.00 0.00 0.00 3.41
4635 4809 5.625568 AACCAGTACTACCAAACTCACTT 57.374 39.130 0.00 0.00 0.00 3.16
4636 4810 4.957296 ACCAGTACTACCAAACTCACTTG 58.043 43.478 0.00 0.00 0.00 3.16
4637 4811 4.652421 ACCAGTACTACCAAACTCACTTGA 59.348 41.667 0.00 0.00 0.00 3.02
4638 4812 5.129815 ACCAGTACTACCAAACTCACTTGAA 59.870 40.000 0.00 0.00 0.00 2.69
4639 4813 5.465724 CCAGTACTACCAAACTCACTTGAAC 59.534 44.000 0.00 0.00 0.00 3.18
4640 4814 5.465724 CAGTACTACCAAACTCACTTGAACC 59.534 44.000 0.00 0.00 0.00 3.62
4641 4815 4.497291 ACTACCAAACTCACTTGAACCA 57.503 40.909 0.00 0.00 0.00 3.67
4642 4816 4.850680 ACTACCAAACTCACTTGAACCAA 58.149 39.130 0.00 0.00 0.00 3.67
4643 4817 4.638865 ACTACCAAACTCACTTGAACCAAC 59.361 41.667 0.00 0.00 0.00 3.77
4644 4818 3.697166 ACCAAACTCACTTGAACCAACT 58.303 40.909 0.00 0.00 0.00 3.16
4645 4819 3.443681 ACCAAACTCACTTGAACCAACTG 59.556 43.478 0.00 0.00 0.00 3.16
4646 4820 3.438360 CAAACTCACTTGAACCAACTGC 58.562 45.455 0.00 0.00 0.00 4.40
4647 4821 2.418368 ACTCACTTGAACCAACTGCA 57.582 45.000 0.00 0.00 0.00 4.41
4648 4822 2.722094 ACTCACTTGAACCAACTGCAA 58.278 42.857 0.00 0.00 0.00 4.08
4649 4823 3.088532 ACTCACTTGAACCAACTGCAAA 58.911 40.909 0.00 0.00 0.00 3.68
4650 4824 3.701040 ACTCACTTGAACCAACTGCAAAT 59.299 39.130 0.00 0.00 0.00 2.32
4651 4825 4.887071 ACTCACTTGAACCAACTGCAAATA 59.113 37.500 0.00 0.00 0.00 1.40
4652 4826 5.009010 ACTCACTTGAACCAACTGCAAATAG 59.991 40.000 0.00 0.00 0.00 1.73
4653 4827 4.887071 TCACTTGAACCAACTGCAAATAGT 59.113 37.500 0.00 0.00 0.00 2.12
4654 4828 6.058833 TCACTTGAACCAACTGCAAATAGTA 58.941 36.000 0.00 0.00 0.00 1.82
4655 4829 6.204688 TCACTTGAACCAACTGCAAATAGTAG 59.795 38.462 0.00 0.00 35.87 2.57
4656 4830 6.204688 CACTTGAACCAACTGCAAATAGTAGA 59.795 38.462 0.00 0.00 33.69 2.59
4657 4831 6.428159 ACTTGAACCAACTGCAAATAGTAGAG 59.572 38.462 0.00 0.00 33.69 2.43
4658 4832 4.695455 TGAACCAACTGCAAATAGTAGAGC 59.305 41.667 0.00 0.00 33.69 4.09
4659 4833 3.610911 ACCAACTGCAAATAGTAGAGCC 58.389 45.455 0.00 0.00 33.69 4.70
4660 4834 3.264450 ACCAACTGCAAATAGTAGAGCCT 59.736 43.478 0.00 0.00 33.69 4.58
4661 4835 4.469945 ACCAACTGCAAATAGTAGAGCCTA 59.530 41.667 0.00 0.00 33.69 3.93
4662 4836 4.811557 CCAACTGCAAATAGTAGAGCCTAC 59.188 45.833 4.67 4.67 33.69 3.18
4663 4837 5.395768 CCAACTGCAAATAGTAGAGCCTACT 60.396 44.000 16.07 16.07 33.69 2.57
4664 4838 5.941555 ACTGCAAATAGTAGAGCCTACTT 57.058 39.130 16.76 5.99 33.69 2.24
4665 4839 6.301169 ACTGCAAATAGTAGAGCCTACTTT 57.699 37.500 16.76 9.00 33.69 2.66
4666 4840 6.109359 ACTGCAAATAGTAGAGCCTACTTTG 58.891 40.000 16.76 15.99 33.69 2.77
4667 4841 6.070767 ACTGCAAATAGTAGAGCCTACTTTGA 60.071 38.462 19.95 7.74 33.69 2.69
4668 4842 6.889198 TGCAAATAGTAGAGCCTACTTTGAT 58.111 36.000 19.95 9.10 0.00 2.57
4669 4843 7.338710 TGCAAATAGTAGAGCCTACTTTGATT 58.661 34.615 19.95 12.67 0.00 2.57
4670 4844 7.829211 TGCAAATAGTAGAGCCTACTTTGATTT 59.171 33.333 19.95 15.86 0.00 2.17
4671 4845 8.678199 GCAAATAGTAGAGCCTACTTTGATTTT 58.322 33.333 19.95 11.63 0.00 1.82
4673 4847 9.959721 AAATAGTAGAGCCTACTTTGATTTTCA 57.040 29.630 16.76 1.02 0.00 2.69
4676 4850 8.499403 AGTAGAGCCTACTTTGATTTTCATTC 57.501 34.615 8.55 0.00 0.00 2.67
4677 4851 6.765915 AGAGCCTACTTTGATTTTCATTCC 57.234 37.500 0.00 0.00 0.00 3.01
4678 4852 5.654209 AGAGCCTACTTTGATTTTCATTCCC 59.346 40.000 0.00 0.00 0.00 3.97
4679 4853 5.583932 AGCCTACTTTGATTTTCATTCCCT 58.416 37.500 0.00 0.00 0.00 4.20
4680 4854 5.420104 AGCCTACTTTGATTTTCATTCCCTG 59.580 40.000 0.00 0.00 0.00 4.45
4681 4855 5.185828 GCCTACTTTGATTTTCATTCCCTGT 59.814 40.000 0.00 0.00 0.00 4.00
4682 4856 6.625960 GCCTACTTTGATTTTCATTCCCTGTC 60.626 42.308 0.00 0.00 0.00 3.51
4683 4857 6.660949 CCTACTTTGATTTTCATTCCCTGTCT 59.339 38.462 0.00 0.00 0.00 3.41
4684 4858 6.983906 ACTTTGATTTTCATTCCCTGTCTT 57.016 33.333 0.00 0.00 0.00 3.01
4685 4859 7.365497 ACTTTGATTTTCATTCCCTGTCTTT 57.635 32.000 0.00 0.00 0.00 2.52
4686 4860 7.795047 ACTTTGATTTTCATTCCCTGTCTTTT 58.205 30.769 0.00 0.00 0.00 2.27
4687 4861 8.267183 ACTTTGATTTTCATTCCCTGTCTTTTT 58.733 29.630 0.00 0.00 0.00 1.94
4742 4916 2.816087 GCAACATGCAGAGAGGAAAAGA 59.184 45.455 0.00 0.00 44.26 2.52
4775 4949 2.360475 GCCTCCTTGTCACAGGGC 60.360 66.667 0.00 0.00 34.24 5.19
4776 4950 2.046892 CCTCCTTGTCACAGGGCG 60.047 66.667 0.00 0.00 34.24 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 29 3.763897 GTGTGGGCAATTAATGAAGAGGT 59.236 43.478 0.00 0.00 0.00 3.85
100 104 6.261859 ACATATTTATCGCGCATTGTTTTGA 58.738 32.000 8.75 0.00 0.00 2.69
215 219 6.748198 GGGTCGATAATTTTGCAACGAAATAA 59.252 34.615 8.86 0.00 0.00 1.40
255 259 4.728882 GCATCTAGTCCAAGAAACAATGCG 60.729 45.833 0.00 0.00 0.00 4.73
277 281 0.109319 CAATGTACCTTGTTGGGCGC 60.109 55.000 0.00 0.00 41.11 6.53
279 283 0.246360 GCCAATGTACCTTGTTGGGC 59.754 55.000 9.62 2.83 42.05 5.36
306 310 1.133025 CAAGCCGGCTAACAAATCCAG 59.867 52.381 33.07 5.72 0.00 3.86
315 319 0.034337 AAACTCGACAAGCCGGCTAA 59.966 50.000 33.07 12.17 0.00 3.09
382 386 3.818210 TGACCGCACACTGACAAATTATT 59.182 39.130 0.00 0.00 0.00 1.40
450 456 1.537990 GGCATTTTTGCCGCGGAATAT 60.538 47.619 33.48 13.05 45.79 1.28
567 576 5.736951 TTTGGAGAAAATGTACCAATGGG 57.263 39.130 3.55 0.00 41.14 4.00
724 739 4.373116 GCGACTGCGTGGAAGGGA 62.373 66.667 0.00 0.00 40.36 4.20
802 823 2.130073 GACCGTTGCTGTGGCCTTTC 62.130 60.000 3.32 0.00 37.74 2.62
840 861 1.772063 GAGAGAGAGAGAGACGGCGC 61.772 65.000 6.90 0.00 0.00 6.53
853 874 2.581354 CTGGGGTTGGCGAGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
854 875 3.706373 GCTGGGGTTGGCGAGAGA 61.706 66.667 0.00 0.00 0.00 3.10
866 903 0.453390 GAAGCGAAGATTTGGCTGGG 59.547 55.000 0.00 0.00 44.26 4.45
1101 1150 4.158394 AGAAGCAAGCAAACTCAGAAACAA 59.842 37.500 0.00 0.00 0.00 2.83
1105 1154 3.065786 CACAGAAGCAAGCAAACTCAGAA 59.934 43.478 0.00 0.00 0.00 3.02
1124 1173 1.421877 CACACACGCGAACAACACA 59.578 52.632 15.93 0.00 0.00 3.72
1458 1522 4.843220 ATCGAATTGGAGATTTGATGGC 57.157 40.909 0.00 0.00 32.48 4.40
1498 1562 7.928167 CCTATCTATCTATTGACTGTTTGTGCA 59.072 37.037 0.00 0.00 0.00 4.57
1560 1624 2.579787 CCGACTGTCGATCGCACC 60.580 66.667 29.93 1.07 43.74 5.01
1630 1712 1.371183 CAACCCGAGAGTGGCAAGA 59.629 57.895 0.00 0.00 0.00 3.02
1642 1725 1.015085 CACATTGCAATGCCAACCCG 61.015 55.000 33.94 12.70 40.04 5.28
1771 1858 5.123344 ACAAGTACACAACCAAGACTTTGTC 59.877 40.000 0.00 0.00 33.59 3.18
1790 1879 9.595823 GTGTATTATATGAGTACAACCACAAGT 57.404 33.333 0.00 0.00 30.87 3.16
1794 1883 8.202137 ACTGGTGTATTATATGAGTACAACCAC 58.798 37.037 0.00 0.00 35.66 4.16
1806 1895 8.644216 TGTCGGTATCAAACTGGTGTATTATAT 58.356 33.333 0.00 0.00 34.96 0.86
1933 2031 2.514205 ATTTGGTTGTTGCTGTGCTC 57.486 45.000 0.00 0.00 0.00 4.26
2000 2100 6.433404 CCTCTTGTACTCACTGTAGGTAGAAA 59.567 42.308 0.00 0.00 0.00 2.52
2002 2102 5.250082 TCCTCTTGTACTCACTGTAGGTAGA 59.750 44.000 0.00 0.00 0.00 2.59
2010 2114 6.471233 TTATCCATCCTCTTGTACTCACTG 57.529 41.667 0.00 0.00 0.00 3.66
2076 2183 0.955428 TTAGGCGGCACTGCTTTGAG 60.955 55.000 13.08 0.00 34.52 3.02
2135 2245 7.560262 GGTGGATATTTTAAGAGGCCTTTTACT 59.440 37.037 15.07 0.00 33.94 2.24
2252 2371 1.949799 TTAGGCTTGGGTAACGGGTA 58.050 50.000 0.00 0.00 37.60 3.69
2253 2372 1.003928 CTTTAGGCTTGGGTAACGGGT 59.996 52.381 0.00 0.00 37.60 5.28
2254 2373 1.003928 ACTTTAGGCTTGGGTAACGGG 59.996 52.381 0.00 0.00 37.60 5.28
2261 2380 2.436173 AGCTAGCTACTTTAGGCTTGGG 59.564 50.000 17.69 0.00 39.65 4.12
2264 2383 6.325286 AGTCATTAGCTAGCTACTTTAGGCTT 59.675 38.462 24.09 0.00 39.65 4.35
2359 2478 2.280254 TGGTTGGTGTACACGCGG 60.280 61.111 19.41 1.27 0.00 6.46
2705 2824 0.176680 CCGATGGAGAAGACCACCAG 59.823 60.000 0.00 0.00 43.03 4.00
2857 2976 1.118965 ACCACACGGAGATCCACACA 61.119 55.000 0.00 0.00 35.59 3.72
3267 3386 1.499368 TATGCATGGACTGAGGAGCA 58.501 50.000 10.16 0.00 36.34 4.26
3268 3387 2.614987 GGATATGCATGGACTGAGGAGC 60.615 54.545 10.16 0.00 0.00 4.70
3271 3390 2.905085 AGAGGATATGCATGGACTGAGG 59.095 50.000 10.16 0.00 0.00 3.86
3273 3392 3.311990 ACAGAGGATATGCATGGACTGA 58.688 45.455 10.16 0.00 0.00 3.41
3275 3394 4.282957 CAGTACAGAGGATATGCATGGACT 59.717 45.833 10.16 10.41 35.41 3.85
3276 3395 4.281941 TCAGTACAGAGGATATGCATGGAC 59.718 45.833 10.16 6.69 0.00 4.02
3277 3396 4.281941 GTCAGTACAGAGGATATGCATGGA 59.718 45.833 10.16 0.00 0.00 3.41
3278 3397 4.039609 TGTCAGTACAGAGGATATGCATGG 59.960 45.833 10.16 0.00 0.00 3.66
3280 3399 5.741383 GCTTGTCAGTACAGAGGATATGCAT 60.741 44.000 3.79 3.79 36.83 3.96
3282 3401 4.054671 GCTTGTCAGTACAGAGGATATGC 58.945 47.826 0.00 0.00 36.83 3.14
3285 3404 6.188407 ACTAAGCTTGTCAGTACAGAGGATA 58.812 40.000 9.86 0.00 36.83 2.59
3311 3440 4.801330 AACGAATCACCATAGTCAGACA 57.199 40.909 2.66 0.00 0.00 3.41
3312 3441 6.757010 ACATAAACGAATCACCATAGTCAGAC 59.243 38.462 0.00 0.00 0.00 3.51
3313 3442 6.873997 ACATAAACGAATCACCATAGTCAGA 58.126 36.000 0.00 0.00 0.00 3.27
3314 3443 7.401860 CAACATAAACGAATCACCATAGTCAG 58.598 38.462 0.00 0.00 0.00 3.51
3315 3444 6.315144 CCAACATAAACGAATCACCATAGTCA 59.685 38.462 0.00 0.00 0.00 3.41
3316 3445 6.315393 ACCAACATAAACGAATCACCATAGTC 59.685 38.462 0.00 0.00 0.00 2.59
3317 3446 6.177610 ACCAACATAAACGAATCACCATAGT 58.822 36.000 0.00 0.00 0.00 2.12
3318 3447 6.677781 ACCAACATAAACGAATCACCATAG 57.322 37.500 0.00 0.00 0.00 2.23
3319 3448 7.040340 ACAAACCAACATAAACGAATCACCATA 60.040 33.333 0.00 0.00 0.00 2.74
3326 3455 5.676532 TCGACAAACCAACATAAACGAAT 57.323 34.783 0.00 0.00 0.00 3.34
3327 3456 4.553156 GCTCGACAAACCAACATAAACGAA 60.553 41.667 0.00 0.00 0.00 3.85
3329 3458 3.223157 GCTCGACAAACCAACATAAACG 58.777 45.455 0.00 0.00 0.00 3.60
3330 3459 4.024387 TCTGCTCGACAAACCAACATAAAC 60.024 41.667 0.00 0.00 0.00 2.01
3331 3460 4.130857 TCTGCTCGACAAACCAACATAAA 58.869 39.130 0.00 0.00 0.00 1.40
3332 3461 3.734463 TCTGCTCGACAAACCAACATAA 58.266 40.909 0.00 0.00 0.00 1.90
3333 3462 3.394674 TCTGCTCGACAAACCAACATA 57.605 42.857 0.00 0.00 0.00 2.29
3334 3463 2.254546 TCTGCTCGACAAACCAACAT 57.745 45.000 0.00 0.00 0.00 2.71
3335 3464 2.254546 ATCTGCTCGACAAACCAACA 57.745 45.000 0.00 0.00 0.00 3.33
3336 3465 2.918131 GCAATCTGCTCGACAAACCAAC 60.918 50.000 0.00 0.00 40.96 3.77
3338 3467 0.874390 GCAATCTGCTCGACAAACCA 59.126 50.000 0.00 0.00 40.96 3.67
3340 3469 0.179215 CCGCAATCTGCTCGACAAAC 60.179 55.000 0.00 0.00 42.25 2.93
3341 3470 1.911293 GCCGCAATCTGCTCGACAAA 61.911 55.000 0.00 0.00 42.25 2.83
3342 3471 2.390599 GCCGCAATCTGCTCGACAA 61.391 57.895 0.00 0.00 42.25 3.18
3343 3472 2.815211 GCCGCAATCTGCTCGACA 60.815 61.111 0.00 0.00 42.25 4.35
3344 3473 3.918220 CGCCGCAATCTGCTCGAC 61.918 66.667 4.79 0.00 42.25 4.20
3345 3474 3.058783 TACGCCGCAATCTGCTCGA 62.059 57.895 14.13 0.00 42.25 4.04
3346 3475 2.582226 TACGCCGCAATCTGCTCG 60.582 61.111 8.07 8.07 42.25 5.03
3347 3476 2.860628 CGTACGCCGCAATCTGCTC 61.861 63.158 0.52 0.00 42.25 4.26
3348 3477 2.885644 CGTACGCCGCAATCTGCT 60.886 61.111 0.52 0.00 42.25 4.24
3514 3643 2.073220 CGTCACGAACGTCCACGAG 61.073 63.158 17.66 8.30 46.42 4.18
3809 3944 3.058016 CCAACATGTTCTTGCCTGTACAG 60.058 47.826 16.34 16.34 0.00 2.74
3933 4068 2.203771 CCGATCCTCCTTCCTCCGG 61.204 68.421 0.00 0.00 0.00 5.14
3934 4069 1.152735 TCCGATCCTCCTTCCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
3937 4072 1.412361 CCTTCTCCGATCCTCCTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
3977 4112 1.189403 CGTGAGAACTACGATTCGCC 58.811 55.000 5.86 0.00 43.82 5.54
4000 4135 4.924924 CGAGTCGATAAGCCTCGG 57.075 61.111 6.73 0.00 43.20 4.63
4005 4140 0.595310 GTGCTCCCGAGTCGATAAGC 60.595 60.000 15.64 18.48 0.00 3.09
4016 4151 0.670546 AACATCAACTCGTGCTCCCG 60.671 55.000 0.00 0.00 0.00 5.14
4017 4152 1.079503 GAACATCAACTCGTGCTCCC 58.920 55.000 0.00 0.00 0.00 4.30
4039 4174 6.014840 ACGTCCCTATTTTAGACACAAGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
4040 4175 5.479375 ACGTCCCTATTTTAGACACAAGAGA 59.521 40.000 0.00 0.00 0.00 3.10
4058 4193 0.974525 AGTTGGCCCTAGTACGTCCC 60.975 60.000 0.00 0.00 0.00 4.46
4059 4194 0.459078 GAGTTGGCCCTAGTACGTCC 59.541 60.000 0.00 0.00 0.00 4.79
4060 4195 1.472188 AGAGTTGGCCCTAGTACGTC 58.528 55.000 0.00 0.00 0.00 4.34
4061 4196 1.934410 AAGAGTTGGCCCTAGTACGT 58.066 50.000 0.00 0.00 0.00 3.57
4062 4197 3.329929 AAAAGAGTTGGCCCTAGTACG 57.670 47.619 0.00 0.00 0.00 3.67
4089 4224 6.877611 AAATGGACGAATTTACAGAACACT 57.122 33.333 0.00 0.00 0.00 3.55
4090 4225 7.924103 AAAAATGGACGAATTTACAGAACAC 57.076 32.000 0.00 0.00 0.00 3.32
4120 4257 5.044846 ACCCCTAATAACAGCTGAGAAACAT 60.045 40.000 23.35 2.12 0.00 2.71
4121 4258 4.288626 ACCCCTAATAACAGCTGAGAAACA 59.711 41.667 23.35 0.00 0.00 2.83
4122 4259 4.844884 ACCCCTAATAACAGCTGAGAAAC 58.155 43.478 23.35 0.00 0.00 2.78
4123 4260 5.396436 GCTACCCCTAATAACAGCTGAGAAA 60.396 44.000 23.35 2.41 0.00 2.52
4126 4263 3.388024 TGCTACCCCTAATAACAGCTGAG 59.612 47.826 23.35 6.55 0.00 3.35
4141 4278 1.153269 GCTCAGGCTTCTGCTACCC 60.153 63.158 0.00 0.00 38.36 3.69
4185 4338 7.522073 GCATCCTTGTAAAATCACTCTGACAAA 60.522 37.037 0.00 0.00 0.00 2.83
4186 4339 6.072508 GCATCCTTGTAAAATCACTCTGACAA 60.073 38.462 0.00 0.00 0.00 3.18
4192 4345 5.126061 ACATGGCATCCTTGTAAAATCACTC 59.874 40.000 0.00 0.00 39.59 3.51
4193 4346 5.018809 ACATGGCATCCTTGTAAAATCACT 58.981 37.500 0.00 0.00 39.59 3.41
4200 4353 7.658525 AAATATTCACATGGCATCCTTGTAA 57.341 32.000 0.00 0.00 39.41 2.41
4201 4354 7.560991 AGAAAATATTCACATGGCATCCTTGTA 59.439 33.333 0.00 0.00 39.41 2.41
4245 4398 5.769662 ACTTGCCATCTCATGAAAAACACTA 59.230 36.000 0.00 0.00 0.00 2.74
4246 4399 4.586001 ACTTGCCATCTCATGAAAAACACT 59.414 37.500 0.00 0.00 0.00 3.55
4247 4400 4.682860 CACTTGCCATCTCATGAAAAACAC 59.317 41.667 0.00 0.00 0.00 3.32
4248 4401 4.262121 CCACTTGCCATCTCATGAAAAACA 60.262 41.667 0.00 0.00 0.00 2.83
4249 4402 4.240096 CCACTTGCCATCTCATGAAAAAC 58.760 43.478 0.00 0.00 0.00 2.43
4250 4403 3.896888 ACCACTTGCCATCTCATGAAAAA 59.103 39.130 0.00 0.00 0.00 1.94
4272 4425 2.359850 GATCAGGCAACACCGGCA 60.360 61.111 0.00 0.00 46.52 5.69
4273 4426 1.244019 AAAGATCAGGCAACACCGGC 61.244 55.000 0.00 0.00 46.52 6.13
4274 4427 0.523072 CAAAGATCAGGCAACACCGG 59.477 55.000 0.00 0.00 46.52 5.28
4283 4436 4.778534 AAGCATCACAACAAAGATCAGG 57.221 40.909 0.00 0.00 0.00 3.86
4304 4457 8.063200 TCAGTTCAGAATTTCGGATACTCTTA 57.937 34.615 0.00 0.00 0.00 2.10
4305 4458 6.936279 TCAGTTCAGAATTTCGGATACTCTT 58.064 36.000 0.00 0.00 0.00 2.85
4306 4459 6.531503 TCAGTTCAGAATTTCGGATACTCT 57.468 37.500 0.00 0.00 0.00 3.24
4308 4461 6.464222 TGTTCAGTTCAGAATTTCGGATACT 58.536 36.000 0.00 4.85 0.00 2.12
4314 4479 6.834876 TCATCATGTTCAGTTCAGAATTTCG 58.165 36.000 0.00 0.00 0.00 3.46
4327 4492 4.272489 GGTCCAATTCCTCATCATGTTCA 58.728 43.478 0.00 0.00 0.00 3.18
4343 4508 1.553248 CCCTCAACTATCACGGTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
4351 4516 2.307768 CTCTACGCCCCTCAACTATCA 58.692 52.381 0.00 0.00 0.00 2.15
4380 4554 4.511527 CACTACCATGCTCTGTTCAGAAT 58.488 43.478 4.09 0.00 0.00 2.40
4383 4557 2.005451 GCACTACCATGCTCTGTTCAG 58.995 52.381 0.00 0.00 42.62 3.02
4400 4574 2.183409 CCATTACTGGTGGCTGCAC 58.817 57.895 0.50 0.00 37.79 4.57
4414 4588 0.320771 GCCACTCACGAGTCACCATT 60.321 55.000 0.00 0.00 40.20 3.16
4424 4598 2.930040 AGAATCGTTAATGCCACTCACG 59.070 45.455 0.00 0.00 0.00 4.35
4447 4621 1.163420 ATTGCGTGAACGAACCTGCA 61.163 50.000 7.10 0.00 43.02 4.41
4514 4688 9.313118 CAATTAGCTTTGTACTGGTTTCTTTTT 57.687 29.630 0.00 0.00 0.00 1.94
4515 4689 8.474831 ACAATTAGCTTTGTACTGGTTTCTTTT 58.525 29.630 1.86 0.00 38.04 2.27
4516 4690 8.007405 ACAATTAGCTTTGTACTGGTTTCTTT 57.993 30.769 1.86 0.00 38.04 2.52
4517 4691 7.284489 TGACAATTAGCTTTGTACTGGTTTCTT 59.716 33.333 3.78 0.00 39.85 2.52
4518 4692 6.770785 TGACAATTAGCTTTGTACTGGTTTCT 59.229 34.615 3.78 0.00 39.85 2.52
4519 4693 6.856426 GTGACAATTAGCTTTGTACTGGTTTC 59.144 38.462 3.78 0.00 39.85 2.78
4520 4694 6.512741 CGTGACAATTAGCTTTGTACTGGTTT 60.513 38.462 3.78 0.00 39.85 3.27
4521 4695 5.049680 CGTGACAATTAGCTTTGTACTGGTT 60.050 40.000 3.78 0.00 39.85 3.67
4522 4696 4.451096 CGTGACAATTAGCTTTGTACTGGT 59.549 41.667 3.78 0.00 39.85 4.00
4523 4697 4.451096 ACGTGACAATTAGCTTTGTACTGG 59.549 41.667 3.78 0.00 39.85 4.00
4524 4698 5.405571 AGACGTGACAATTAGCTTTGTACTG 59.594 40.000 3.78 0.44 39.85 2.74
4525 4699 5.539048 AGACGTGACAATTAGCTTTGTACT 58.461 37.500 3.78 0.00 39.85 2.73
4526 4700 5.840940 AGACGTGACAATTAGCTTTGTAC 57.159 39.130 3.78 3.31 39.85 2.90
4527 4701 6.916440 TCTAGACGTGACAATTAGCTTTGTA 58.084 36.000 3.78 0.00 39.85 2.41
4528 4702 5.779922 TCTAGACGTGACAATTAGCTTTGT 58.220 37.500 3.42 3.42 42.37 2.83
4529 4703 6.706055 TTCTAGACGTGACAATTAGCTTTG 57.294 37.500 0.00 0.00 0.00 2.77
4530 4704 7.656137 TCTTTTCTAGACGTGACAATTAGCTTT 59.344 33.333 0.00 0.00 0.00 3.51
4531 4705 7.152645 TCTTTTCTAGACGTGACAATTAGCTT 58.847 34.615 0.00 0.00 0.00 3.74
4532 4706 6.688578 TCTTTTCTAGACGTGACAATTAGCT 58.311 36.000 0.00 0.00 0.00 3.32
4533 4707 6.946229 TCTTTTCTAGACGTGACAATTAGC 57.054 37.500 0.00 0.00 0.00 3.09
4534 4708 9.746711 CAAATCTTTTCTAGACGTGACAATTAG 57.253 33.333 0.00 0.00 35.19 1.73
4535 4709 8.717821 CCAAATCTTTTCTAGACGTGACAATTA 58.282 33.333 0.00 0.00 35.19 1.40
4536 4710 7.228706 ACCAAATCTTTTCTAGACGTGACAATT 59.771 33.333 0.00 0.00 35.19 2.32
4537 4711 6.710744 ACCAAATCTTTTCTAGACGTGACAAT 59.289 34.615 0.00 0.00 35.19 2.71
4538 4712 6.053005 ACCAAATCTTTTCTAGACGTGACAA 58.947 36.000 0.00 0.00 35.19 3.18
4539 4713 5.607477 ACCAAATCTTTTCTAGACGTGACA 58.393 37.500 0.00 0.00 35.19 3.58
4540 4714 6.541111 AACCAAATCTTTTCTAGACGTGAC 57.459 37.500 0.00 0.00 35.19 3.67
4541 4715 7.066525 ACAAAACCAAATCTTTTCTAGACGTGA 59.933 33.333 0.00 0.00 35.19 4.35
4542 4716 7.193595 ACAAAACCAAATCTTTTCTAGACGTG 58.806 34.615 0.00 0.00 35.19 4.49
4543 4717 7.329588 ACAAAACCAAATCTTTTCTAGACGT 57.670 32.000 0.00 0.00 35.19 4.34
4544 4718 8.531530 CAAACAAAACCAAATCTTTTCTAGACG 58.468 33.333 0.00 0.00 35.19 4.18
4545 4719 8.328146 GCAAACAAAACCAAATCTTTTCTAGAC 58.672 33.333 0.00 0.00 35.19 2.59
4546 4720 8.257306 AGCAAACAAAACCAAATCTTTTCTAGA 58.743 29.630 0.00 0.00 37.28 2.43
4547 4721 8.424274 AGCAAACAAAACCAAATCTTTTCTAG 57.576 30.769 0.00 0.00 0.00 2.43
4548 4722 8.663911 CAAGCAAACAAAACCAAATCTTTTCTA 58.336 29.630 0.00 0.00 0.00 2.10
4549 4723 7.529158 CAAGCAAACAAAACCAAATCTTTTCT 58.471 30.769 0.00 0.00 0.00 2.52
4550 4724 6.251163 GCAAGCAAACAAAACCAAATCTTTTC 59.749 34.615 0.00 0.00 0.00 2.29
4551 4725 6.072008 AGCAAGCAAACAAAACCAAATCTTTT 60.072 30.769 0.00 0.00 0.00 2.27
4552 4726 5.415389 AGCAAGCAAACAAAACCAAATCTTT 59.585 32.000 0.00 0.00 0.00 2.52
4553 4727 4.943093 AGCAAGCAAACAAAACCAAATCTT 59.057 33.333 0.00 0.00 0.00 2.40
4554 4728 4.516323 AGCAAGCAAACAAAACCAAATCT 58.484 34.783 0.00 0.00 0.00 2.40
4555 4729 4.880886 AGCAAGCAAACAAAACCAAATC 57.119 36.364 0.00 0.00 0.00 2.17
4556 4730 4.674885 GCAAGCAAGCAAACAAAACCAAAT 60.675 37.500 0.00 0.00 0.00 2.32
4557 4731 3.365767 GCAAGCAAGCAAACAAAACCAAA 60.366 39.130 0.00 0.00 0.00 3.28
4558 4732 2.161211 GCAAGCAAGCAAACAAAACCAA 59.839 40.909 0.00 0.00 0.00 3.67
4559 4733 1.736681 GCAAGCAAGCAAACAAAACCA 59.263 42.857 0.00 0.00 0.00 3.67
4560 4734 2.009051 AGCAAGCAAGCAAACAAAACC 58.991 42.857 3.19 0.00 36.85 3.27
4561 4735 2.223089 CCAGCAAGCAAGCAAACAAAAC 60.223 45.455 3.19 0.00 36.85 2.43
4562 4736 2.008329 CCAGCAAGCAAGCAAACAAAA 58.992 42.857 3.19 0.00 36.85 2.44
4563 4737 1.654317 CCAGCAAGCAAGCAAACAAA 58.346 45.000 3.19 0.00 36.85 2.83
4564 4738 0.179078 CCCAGCAAGCAAGCAAACAA 60.179 50.000 3.19 0.00 36.85 2.83
4565 4739 1.442567 CCCAGCAAGCAAGCAAACA 59.557 52.632 3.19 0.00 36.85 2.83
4566 4740 1.301165 CCCCAGCAAGCAAGCAAAC 60.301 57.895 3.19 0.00 36.85 2.93
4567 4741 2.509651 CCCCCAGCAAGCAAGCAAA 61.510 57.895 3.19 0.00 36.85 3.68
4568 4742 2.918802 CCCCCAGCAAGCAAGCAA 60.919 61.111 3.19 0.00 36.85 3.91
4582 4756 1.143813 ATGATCATCTCACCACCCCC 58.856 55.000 1.18 0.00 36.48 5.40
4583 4757 1.492176 ACATGATCATCTCACCACCCC 59.508 52.381 4.86 0.00 36.48 4.95
4584 4758 2.171237 TCACATGATCATCTCACCACCC 59.829 50.000 4.86 0.00 36.48 4.61
4585 4759 3.548745 TCACATGATCATCTCACCACC 57.451 47.619 4.86 0.00 36.48 4.61
4586 4760 5.885230 TTTTCACATGATCATCTCACCAC 57.115 39.130 4.86 0.00 36.48 4.16
4606 4780 7.612633 TGAGTTTGGTAGTACTGGTTTCTTTTT 59.387 33.333 5.39 0.00 0.00 1.94
4607 4781 7.066645 GTGAGTTTGGTAGTACTGGTTTCTTTT 59.933 37.037 5.39 0.00 0.00 2.27
4608 4782 6.541278 GTGAGTTTGGTAGTACTGGTTTCTTT 59.459 38.462 5.39 0.00 0.00 2.52
4609 4783 6.053650 GTGAGTTTGGTAGTACTGGTTTCTT 58.946 40.000 5.39 0.00 0.00 2.52
4610 4784 5.365895 AGTGAGTTTGGTAGTACTGGTTTCT 59.634 40.000 5.39 0.00 0.00 2.52
4611 4785 5.608449 AGTGAGTTTGGTAGTACTGGTTTC 58.392 41.667 5.39 0.00 0.00 2.78
4612 4786 5.625568 AGTGAGTTTGGTAGTACTGGTTT 57.374 39.130 5.39 0.00 0.00 3.27
4613 4787 5.129815 TCAAGTGAGTTTGGTAGTACTGGTT 59.870 40.000 5.39 0.00 0.00 3.67
4614 4788 4.652421 TCAAGTGAGTTTGGTAGTACTGGT 59.348 41.667 5.39 0.00 0.00 4.00
4615 4789 5.209818 TCAAGTGAGTTTGGTAGTACTGG 57.790 43.478 5.39 0.00 0.00 4.00
4616 4790 5.465724 GGTTCAAGTGAGTTTGGTAGTACTG 59.534 44.000 5.39 0.00 0.00 2.74
4617 4791 5.129815 TGGTTCAAGTGAGTTTGGTAGTACT 59.870 40.000 0.00 0.00 0.00 2.73
4618 4792 5.362263 TGGTTCAAGTGAGTTTGGTAGTAC 58.638 41.667 0.00 0.00 0.00 2.73
4619 4793 5.617528 TGGTTCAAGTGAGTTTGGTAGTA 57.382 39.130 0.00 0.00 0.00 1.82
4620 4794 4.497291 TGGTTCAAGTGAGTTTGGTAGT 57.503 40.909 0.00 0.00 0.00 2.73
4621 4795 4.881850 AGTTGGTTCAAGTGAGTTTGGTAG 59.118 41.667 0.00 0.00 0.00 3.18
4622 4796 4.638421 CAGTTGGTTCAAGTGAGTTTGGTA 59.362 41.667 9.20 0.00 44.73 3.25
4623 4797 3.443681 CAGTTGGTTCAAGTGAGTTTGGT 59.556 43.478 9.20 0.00 44.73 3.67
4624 4798 3.734902 GCAGTTGGTTCAAGTGAGTTTGG 60.735 47.826 16.78 0.00 44.73 3.28
4625 4799 3.119531 TGCAGTTGGTTCAAGTGAGTTTG 60.120 43.478 16.78 0.00 44.73 2.93
4626 4800 3.088532 TGCAGTTGGTTCAAGTGAGTTT 58.911 40.909 16.78 0.00 44.73 2.66
4627 4801 2.722094 TGCAGTTGGTTCAAGTGAGTT 58.278 42.857 16.78 0.00 44.73 3.01
4628 4802 2.418368 TGCAGTTGGTTCAAGTGAGT 57.582 45.000 16.78 0.00 44.73 3.41
4629 4803 3.781079 TTTGCAGTTGGTTCAAGTGAG 57.219 42.857 16.78 0.00 44.73 3.51
4630 4804 4.887071 ACTATTTGCAGTTGGTTCAAGTGA 59.113 37.500 16.78 0.18 44.73 3.41
4631 4805 5.186996 ACTATTTGCAGTTGGTTCAAGTG 57.813 39.130 10.21 10.21 44.74 3.16
4632 4806 6.296026 TCTACTATTTGCAGTTGGTTCAAGT 58.704 36.000 0.00 0.00 0.00 3.16
4633 4807 6.621596 GCTCTACTATTTGCAGTTGGTTCAAG 60.622 42.308 0.00 0.00 0.00 3.02
4634 4808 5.181245 GCTCTACTATTTGCAGTTGGTTCAA 59.819 40.000 0.00 0.00 0.00 2.69
4635 4809 4.695455 GCTCTACTATTTGCAGTTGGTTCA 59.305 41.667 0.00 0.00 0.00 3.18
4636 4810 4.095036 GGCTCTACTATTTGCAGTTGGTTC 59.905 45.833 0.00 0.00 0.00 3.62
4637 4811 4.010349 GGCTCTACTATTTGCAGTTGGTT 58.990 43.478 0.00 0.00 0.00 3.67
4638 4812 3.264450 AGGCTCTACTATTTGCAGTTGGT 59.736 43.478 0.00 0.00 0.00 3.67
4639 4813 3.878778 AGGCTCTACTATTTGCAGTTGG 58.121 45.455 0.00 0.00 0.00 3.77
4640 4814 5.665459 AGTAGGCTCTACTATTTGCAGTTG 58.335 41.667 11.74 0.00 0.00 3.16
4641 4815 5.941555 AGTAGGCTCTACTATTTGCAGTT 57.058 39.130 11.74 0.00 0.00 3.16
4642 4816 5.941555 AAGTAGGCTCTACTATTTGCAGT 57.058 39.130 13.24 0.00 0.00 4.40
4643 4817 6.341316 TCAAAGTAGGCTCTACTATTTGCAG 58.659 40.000 13.24 2.77 30.42 4.41
4644 4818 6.294361 TCAAAGTAGGCTCTACTATTTGCA 57.706 37.500 13.24 0.00 30.42 4.08
4645 4819 7.793927 AATCAAAGTAGGCTCTACTATTTGC 57.206 36.000 13.24 0.00 30.42 3.68
4647 4821 9.959721 TGAAAATCAAAGTAGGCTCTACTATTT 57.040 29.630 13.24 12.36 0.00 1.40
4650 4824 9.601217 GAATGAAAATCAAAGTAGGCTCTACTA 57.399 33.333 13.24 1.95 0.00 1.82
4651 4825 7.554476 GGAATGAAAATCAAAGTAGGCTCTACT 59.446 37.037 8.55 8.55 0.00 2.57
4652 4826 7.201741 GGGAATGAAAATCAAAGTAGGCTCTAC 60.202 40.741 0.00 4.67 0.00 2.59
4653 4827 6.828785 GGGAATGAAAATCAAAGTAGGCTCTA 59.171 38.462 0.00 0.00 0.00 2.43
4654 4828 5.654209 GGGAATGAAAATCAAAGTAGGCTCT 59.346 40.000 0.00 0.00 0.00 4.09
4655 4829 5.654209 AGGGAATGAAAATCAAAGTAGGCTC 59.346 40.000 0.00 0.00 0.00 4.70
4656 4830 5.420104 CAGGGAATGAAAATCAAAGTAGGCT 59.580 40.000 0.00 0.00 0.00 4.58
4657 4831 5.185828 ACAGGGAATGAAAATCAAAGTAGGC 59.814 40.000 0.00 0.00 0.00 3.93
4658 4832 6.660949 AGACAGGGAATGAAAATCAAAGTAGG 59.339 38.462 0.00 0.00 0.00 3.18
4659 4833 7.693969 AGACAGGGAATGAAAATCAAAGTAG 57.306 36.000 0.00 0.00 0.00 2.57
4660 4834 8.477419 AAAGACAGGGAATGAAAATCAAAGTA 57.523 30.769 0.00 0.00 0.00 2.24
4661 4835 6.983906 AAGACAGGGAATGAAAATCAAAGT 57.016 33.333 0.00 0.00 0.00 2.66
4662 4836 8.667076 AAAAAGACAGGGAATGAAAATCAAAG 57.333 30.769 0.00 0.00 0.00 2.77
4695 4869 1.002366 CCTCTGTATCTGCACGTTGC 58.998 55.000 3.44 3.44 45.29 4.17
4696 4870 1.002366 GCCTCTGTATCTGCACGTTG 58.998 55.000 0.00 0.00 0.00 4.10
4697 4871 0.608130 TGCCTCTGTATCTGCACGTT 59.392 50.000 0.00 0.00 0.00 3.99
4698 4872 0.826715 ATGCCTCTGTATCTGCACGT 59.173 50.000 0.00 0.00 36.41 4.49
4699 4873 1.215244 CATGCCTCTGTATCTGCACG 58.785 55.000 0.00 0.00 36.41 5.34
4700 4874 2.322355 ACATGCCTCTGTATCTGCAC 57.678 50.000 0.00 0.00 36.41 4.57
4701 4875 2.635714 CAACATGCCTCTGTATCTGCA 58.364 47.619 0.00 0.00 38.23 4.41
4702 4876 1.332997 GCAACATGCCTCTGTATCTGC 59.667 52.381 0.00 0.00 37.42 4.26
4703 4877 2.635714 TGCAACATGCCTCTGTATCTG 58.364 47.619 0.00 0.00 44.23 2.90
4704 4878 3.012518 GTTGCAACATGCCTCTGTATCT 58.987 45.455 24.52 0.00 44.23 1.98
4705 4879 2.749076 TGTTGCAACATGCCTCTGTATC 59.251 45.455 27.96 0.00 44.23 2.24
4706 4880 2.794103 TGTTGCAACATGCCTCTGTAT 58.206 42.857 27.96 0.00 44.23 2.29
4726 4900 1.677217 GGCGTCTTTTCCTCTCTGCAT 60.677 52.381 0.00 0.00 0.00 3.96
4742 4916 4.070552 GCCGTCTCCTCTTGGCGT 62.071 66.667 0.00 0.00 37.81 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.