Multiple sequence alignment - TraesCS2D01G136400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G136400 chr2D 100.000 3497 0 0 1 3497 80033368 80036864 0.000000e+00 6458.0
1 TraesCS2D01G136400 chr2D 83.135 1008 97 35 1321 2326 232181939 232181003 0.000000e+00 852.0
2 TraesCS2D01G136400 chr2D 90.110 91 8 1 561 650 58651796 58651706 2.210000e-22 117.0
3 TraesCS2D01G136400 chr2A 93.023 2752 128 19 770 3497 80614855 80617566 0.000000e+00 3960.0
4 TraesCS2D01G136400 chr2A 82.934 668 74 20 1379 2043 299511503 299510873 1.820000e-157 566.0
5 TraesCS2D01G136400 chr2A 92.391 92 5 2 561 651 141506412 141506322 2.830000e-26 130.0
6 TraesCS2D01G136400 chr2B 91.123 1442 99 18 2074 3497 131582519 131583949 0.000000e+00 1927.0
7 TraesCS2D01G136400 chr2B 88.483 1424 89 31 659 2043 131581141 131582528 0.000000e+00 1652.0
8 TraesCS2D01G136400 chr2B 90.257 544 44 6 3 542 131580360 131580898 0.000000e+00 702.0
9 TraesCS2D01G136400 chr2B 87.162 148 16 3 6 152 317243622 317243767 7.770000e-37 165.0
10 TraesCS2D01G136400 chr2B 96.512 86 3 0 1574 1659 766619012 766618927 3.640000e-30 143.0
11 TraesCS2D01G136400 chr2B 88.372 86 7 3 567 649 451453614 451453529 2.220000e-17 100.0
12 TraesCS2D01G136400 chr2B 90.698 43 2 2 467 508 568278395 568278354 4.880000e-04 56.5
13 TraesCS2D01G136400 chr3D 86.951 728 52 11 1321 2043 172532044 172531355 0.000000e+00 778.0
14 TraesCS2D01G136400 chr3D 86.126 728 58 18 1321 2043 497286932 497287621 0.000000e+00 745.0
15 TraesCS2D01G136400 chr3D 89.677 310 30 1 3175 3482 2448560 2448869 9.100000e-106 394.0
16 TraesCS2D01G136400 chr3D 86.076 158 21 1 3 159 147686904 147687061 6.000000e-38 169.0
17 TraesCS2D01G136400 chr5D 85.577 728 53 17 1321 2043 489746641 489745961 0.000000e+00 715.0
18 TraesCS2D01G136400 chr5D 85.714 245 25 6 2087 2326 489745952 489745713 2.080000e-62 250.0
19 TraesCS2D01G136400 chr4D 85.165 728 66 22 1321 2043 200717251 200716561 0.000000e+00 708.0
20 TraesCS2D01G136400 chr4D 86.813 91 10 2 561 649 43670378 43670468 2.220000e-17 100.0
21 TraesCS2D01G136400 chr7B 84.392 724 65 12 1321 2040 193199103 193199782 0.000000e+00 667.0
22 TraesCS2D01G136400 chr7B 89.557 316 23 2 1321 1636 717108973 717108668 3.270000e-105 392.0
23 TraesCS2D01G136400 chr7B 81.627 332 35 15 1713 2043 680449150 680449456 5.790000e-63 252.0
24 TraesCS2D01G136400 chr7B 88.517 209 19 2 2118 2326 193199831 193200034 7.500000e-62 248.0
25 TraesCS2D01G136400 chr7B 80.723 332 38 15 1713 2043 680417985 680418291 5.840000e-58 235.0
26 TraesCS2D01G136400 chr7B 86.275 153 20 1 3 154 622493342 622493494 7.770000e-37 165.0
27 TraesCS2D01G136400 chr7B 96.970 33 1 0 466 498 91780502 91780470 4.880000e-04 56.5
28 TraesCS2D01G136400 chr3B 79.389 655 104 15 2849 3497 3258964 3259593 1.930000e-117 433.0
29 TraesCS2D01G136400 chr3B 81.627 332 35 15 1713 2043 701123383 701123077 5.790000e-63 252.0
30 TraesCS2D01G136400 chr3B 88.199 161 18 1 3 162 82634941 82635101 1.280000e-44 191.0
31 TraesCS2D01G136400 chrUn 79.005 643 90 24 2846 3480 270452094 270452699 7.030000e-107 398.0
32 TraesCS2D01G136400 chrUn 79.005 643 90 24 2846 3480 270460358 270460963 7.030000e-107 398.0
33 TraesCS2D01G136400 chrUn 79.005 643 90 24 2846 3480 280680953 280681558 7.030000e-107 398.0
34 TraesCS2D01G136400 chrUn 94.595 74 2 2 566 637 330157351 330157278 2.850000e-21 113.0
35 TraesCS2D01G136400 chr3A 78.295 645 102 21 2849 3480 1623609 1622990 7.080000e-102 381.0
36 TraesCS2D01G136400 chr3A 89.441 161 15 2 3 162 64290135 64290294 5.920000e-48 202.0
37 TraesCS2D01G136400 chr3A 93.506 77 5 0 2050 2126 265795769 265795845 7.930000e-22 115.0
38 TraesCS2D01G136400 chr3A 88.542 96 10 1 562 656 401026678 401026583 7.930000e-22 115.0
39 TraesCS2D01G136400 chr6B 81.627 332 35 15 1713 2043 519170392 519170698 5.790000e-63 252.0
40 TraesCS2D01G136400 chr4B 88.038 209 20 2 2118 2326 614205575 614205372 3.490000e-60 243.0
41 TraesCS2D01G136400 chr4B 80.723 332 36 16 1713 2043 614205924 614205620 2.100000e-57 233.0
42 TraesCS2D01G136400 chr1B 87.560 209 21 2 2118 2326 34738177 34737974 1.620000e-58 237.0
43 TraesCS2D01G136400 chr1B 85.987 157 20 2 3 157 317446408 317446252 2.160000e-37 167.0
44 TraesCS2D01G136400 chr4A 87.081 209 22 2 2118 2326 706767326 706767529 7.550000e-57 231.0
45 TraesCS2D01G136400 chr4A 87.640 89 10 1 563 650 612457294 612457382 6.180000e-18 102.0
46 TraesCS2D01G136400 chr5B 86.603 209 23 2 2118 2326 20985816 20985613 3.510000e-55 226.0
47 TraesCS2D01G136400 chr5B 91.566 83 6 1 563 644 278886695 278886613 2.850000e-21 113.0
48 TraesCS2D01G136400 chr5A 90.196 153 13 2 3 154 572829409 572829258 7.660000e-47 198.0
49 TraesCS2D01G136400 chr7A 86.709 158 15 5 3 159 491982026 491981874 1.670000e-38 171.0
50 TraesCS2D01G136400 chr6A 90.110 91 8 1 561 650 206007908 206007998 2.210000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G136400 chr2D 80033368 80036864 3496 False 6458.0 6458 100.000000 1 3497 1 chr2D.!!$F1 3496
1 TraesCS2D01G136400 chr2D 232181003 232181939 936 True 852.0 852 83.135000 1321 2326 1 chr2D.!!$R2 1005
2 TraesCS2D01G136400 chr2A 80614855 80617566 2711 False 3960.0 3960 93.023000 770 3497 1 chr2A.!!$F1 2727
3 TraesCS2D01G136400 chr2A 299510873 299511503 630 True 566.0 566 82.934000 1379 2043 1 chr2A.!!$R2 664
4 TraesCS2D01G136400 chr2B 131580360 131583949 3589 False 1427.0 1927 89.954333 3 3497 3 chr2B.!!$F2 3494
5 TraesCS2D01G136400 chr3D 172531355 172532044 689 True 778.0 778 86.951000 1321 2043 1 chr3D.!!$R1 722
6 TraesCS2D01G136400 chr3D 497286932 497287621 689 False 745.0 745 86.126000 1321 2043 1 chr3D.!!$F3 722
7 TraesCS2D01G136400 chr5D 489745713 489746641 928 True 482.5 715 85.645500 1321 2326 2 chr5D.!!$R1 1005
8 TraesCS2D01G136400 chr4D 200716561 200717251 690 True 708.0 708 85.165000 1321 2043 1 chr4D.!!$R1 722
9 TraesCS2D01G136400 chr7B 193199103 193200034 931 False 457.5 667 86.454500 1321 2326 2 chr7B.!!$F4 1005
10 TraesCS2D01G136400 chr3B 3258964 3259593 629 False 433.0 433 79.389000 2849 3497 1 chr3B.!!$F1 648
11 TraesCS2D01G136400 chrUn 270452094 270452699 605 False 398.0 398 79.005000 2846 3480 1 chrUn.!!$F1 634
12 TraesCS2D01G136400 chrUn 270460358 270460963 605 False 398.0 398 79.005000 2846 3480 1 chrUn.!!$F2 634
13 TraesCS2D01G136400 chrUn 280680953 280681558 605 False 398.0 398 79.005000 2846 3480 1 chrUn.!!$F3 634
14 TraesCS2D01G136400 chr3A 1622990 1623609 619 True 381.0 381 78.295000 2849 3480 1 chr3A.!!$R1 631
15 TraesCS2D01G136400 chr4B 614205372 614205924 552 True 238.0 243 84.380500 1713 2326 2 chr4B.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 389 0.449388 GACCTGCTGCTACAACATGC 59.551 55.0 0.0 0.0 0.0 4.06 F
400 404 0.462047 CATGCCGACCTTACACCCTC 60.462 60.0 0.0 0.0 0.0 4.30 F
724 893 0.472471 ACAGAAAGAGTTGCCCCGAA 59.528 50.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 2036 0.991920 TGGATTGGAGGAAGTGTCCC 59.008 55.000 0.0 0.0 46.3 4.46 R
1896 2103 2.210116 ACGCACGAACAAACAGAGATT 58.790 42.857 0.0 0.0 0.0 2.40 R
2618 2857 1.813178 GAAGGCTAGGCAAAACTGGAC 59.187 52.381 19.7 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 8.870075 ATTTGGTTGAGCTTCTAGAATAAACT 57.130 30.769 5.44 1.57 0.00 2.66
102 103 7.672983 TTGGTTGAGCTTCTAGAATAAACTG 57.327 36.000 5.44 0.00 0.00 3.16
104 105 5.586643 GGTTGAGCTTCTAGAATAAACTGGG 59.413 44.000 5.44 0.00 0.00 4.45
108 109 6.098409 TGAGCTTCTAGAATAAACTGGGTAGG 59.902 42.308 5.44 0.00 0.00 3.18
111 112 5.230746 TCTAGAATAAACTGGGTAGGGGT 57.769 43.478 0.00 0.00 0.00 4.95
112 113 6.359873 TCTAGAATAAACTGGGTAGGGGTA 57.640 41.667 0.00 0.00 0.00 3.69
113 114 6.379579 TCTAGAATAAACTGGGTAGGGGTAG 58.620 44.000 0.00 0.00 0.00 3.18
114 115 3.715315 AGAATAAACTGGGTAGGGGTAGC 59.285 47.826 0.00 0.00 0.00 3.58
117 118 2.955200 AACTGGGTAGGGGTAGCTTA 57.045 50.000 0.00 0.00 0.00 3.09
118 119 3.433088 AACTGGGTAGGGGTAGCTTAT 57.567 47.619 0.00 0.00 0.00 1.73
119 120 2.973710 ACTGGGTAGGGGTAGCTTATC 58.026 52.381 0.00 0.00 0.00 1.75
120 121 2.258109 CTGGGTAGGGGTAGCTTATCC 58.742 57.143 0.00 0.00 0.00 2.59
146 148 9.573133 CCAACTTATTATAGAAACCAGCAAAAG 57.427 33.333 0.00 0.00 0.00 2.27
163 165 4.026886 GCAAAAGAACTGGCACTTAAAACG 60.027 41.667 0.00 0.00 0.00 3.60
200 202 9.625009 CTAAAATTACAAGATCACGAGAAATCG 57.375 33.333 0.00 0.00 39.31 3.34
283 285 8.958119 ATTTCGTAGCTTAAAATCCATACAGA 57.042 30.769 0.00 0.00 0.00 3.41
284 286 8.958119 TTTCGTAGCTTAAAATCCATACAGAT 57.042 30.769 0.00 0.00 0.00 2.90
285 287 7.946655 TCGTAGCTTAAAATCCATACAGATG 57.053 36.000 0.00 0.00 0.00 2.90
286 288 7.497595 TCGTAGCTTAAAATCCATACAGATGT 58.502 34.615 0.00 0.00 0.00 3.06
306 308 9.262358 CAGATGTTCCTAAATAGTAGTAAAGGC 57.738 37.037 0.00 0.00 0.00 4.35
307 309 8.430431 AGATGTTCCTAAATAGTAGTAAAGGCC 58.570 37.037 0.00 0.00 0.00 5.19
308 310 7.499200 TGTTCCTAAATAGTAGTAAAGGCCA 57.501 36.000 5.01 0.00 0.00 5.36
312 314 6.904654 TCCTAAATAGTAGTAAAGGCCAGGAA 59.095 38.462 5.01 0.00 0.00 3.36
351 355 6.126863 ACAACAACATTCCTAGAATCCTCA 57.873 37.500 0.00 0.00 0.00 3.86
365 369 2.182516 TCCTCAATCCTCTCCCTTCC 57.817 55.000 0.00 0.00 0.00 3.46
375 379 3.672295 CTCCCTTCCGACCTGCTGC 62.672 68.421 0.00 0.00 0.00 5.25
385 389 0.449388 GACCTGCTGCTACAACATGC 59.551 55.000 0.00 0.00 0.00 4.06
387 391 1.426621 CTGCTGCTACAACATGCCG 59.573 57.895 0.00 0.00 0.00 5.69
389 393 1.298157 TGCTGCTACAACATGCCGAC 61.298 55.000 0.00 0.00 0.00 4.79
400 404 0.462047 CATGCCGACCTTACACCCTC 60.462 60.000 0.00 0.00 0.00 4.30
440 444 2.281484 GAGCTTGGGTGCCAACGA 60.281 61.111 0.00 0.00 38.75 3.85
441 445 1.675641 GAGCTTGGGTGCCAACGAT 60.676 57.895 0.00 0.00 38.75 3.73
474 478 7.593653 AGTACCATTATACAGAGTTACTCCCT 58.406 38.462 8.96 0.00 0.00 4.20
477 481 5.839063 CCATTATACAGAGTTACTCCCTCCA 59.161 44.000 8.96 0.00 0.00 3.86
480 484 7.598759 TTATACAGAGTTACTCCCTCCATTC 57.401 40.000 8.96 0.00 0.00 2.67
482 486 4.366267 ACAGAGTTACTCCCTCCATTCAT 58.634 43.478 8.96 0.00 0.00 2.57
547 552 4.541085 AGACACGTTTTAGTTTTTCCCG 57.459 40.909 0.00 0.00 0.00 5.14
548 553 3.038017 GACACGTTTTAGTTTTTCCCGC 58.962 45.455 0.00 0.00 0.00 6.13
549 554 2.422832 ACACGTTTTAGTTTTTCCCGCA 59.577 40.909 0.00 0.00 0.00 5.69
550 555 3.119566 ACACGTTTTAGTTTTTCCCGCAA 60.120 39.130 0.00 0.00 0.00 4.85
551 556 3.858238 CACGTTTTAGTTTTTCCCGCAAA 59.142 39.130 0.00 0.00 0.00 3.68
552 557 4.326548 CACGTTTTAGTTTTTCCCGCAAAA 59.673 37.500 0.00 0.00 31.73 2.44
553 558 4.928020 ACGTTTTAGTTTTTCCCGCAAAAA 59.072 33.333 0.46 0.46 40.93 1.94
582 587 7.364970 AGAAGACACGTTTTAGTTTGTTTGTT 58.635 30.769 0.00 0.00 0.00 2.83
585 590 6.579666 AGACACGTTTTAGTTTGTTTGTTCAC 59.420 34.615 0.00 0.00 0.00 3.18
596 601 8.911247 AGTTTGTTTGTTCACTTATTTCAGTC 57.089 30.769 0.00 0.00 0.00 3.51
597 602 7.973944 AGTTTGTTTGTTCACTTATTTCAGTCC 59.026 33.333 0.00 0.00 0.00 3.85
605 610 7.758076 TGTTCACTTATTTCAGTCCGTATGTAG 59.242 37.037 0.00 0.00 0.00 2.74
609 614 9.577110 CACTTATTTCAGTCCGTATGTAGTTTA 57.423 33.333 0.00 0.00 0.00 2.01
650 655 7.394816 ACATCTTATATTTATGAACCGAGGGG 58.605 38.462 0.00 0.00 40.11 4.79
706 875 8.881743 TGATAGGCAAATGAAAAATTATGCAAC 58.118 29.630 0.00 0.00 35.57 4.17
715 884 9.768662 AATGAAAAATTATGCAACAGAAAGAGT 57.231 25.926 0.00 0.00 0.00 3.24
724 893 0.472471 ACAGAAAGAGTTGCCCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
732 901 2.755103 AGAGTTGCCCCGAATCAAAATC 59.245 45.455 0.00 0.00 0.00 2.17
739 908 3.066760 GCCCCGAATCAAAATCCAGTAAG 59.933 47.826 0.00 0.00 0.00 2.34
747 916 6.939132 ATCAAAATCCAGTAAGATCTGCAG 57.061 37.500 7.63 7.63 34.47 4.41
750 919 7.795047 TCAAAATCCAGTAAGATCTGCAGATA 58.205 34.615 28.78 11.45 34.37 1.98
755 924 7.167924 TCCAGTAAGATCTGCAGATATCATC 57.832 40.000 28.78 16.98 34.37 2.92
763 932 1.895798 TGCAGATATCATCCTCGACCC 59.104 52.381 5.32 0.00 0.00 4.46
766 935 2.095008 CAGATATCATCCTCGACCCGTG 60.095 54.545 5.32 0.00 0.00 4.94
767 936 0.603569 ATATCATCCTCGACCCGTGC 59.396 55.000 0.00 0.00 0.00 5.34
768 937 1.792118 TATCATCCTCGACCCGTGCG 61.792 60.000 0.00 0.00 0.00 5.34
769 938 4.873129 CATCCTCGACCCGTGCGG 62.873 72.222 3.25 3.25 37.81 5.69
848 1025 2.569657 CTACACGGGCGCTACACA 59.430 61.111 7.64 0.00 0.00 3.72
907 1084 3.142028 TCCTCCCCCAAAACTTCTCAATT 59.858 43.478 0.00 0.00 0.00 2.32
908 1085 3.511540 CCTCCCCCAAAACTTCTCAATTC 59.488 47.826 0.00 0.00 0.00 2.17
909 1086 3.506398 TCCCCCAAAACTTCTCAATTCC 58.494 45.455 0.00 0.00 0.00 3.01
910 1087 2.567169 CCCCCAAAACTTCTCAATTCCC 59.433 50.000 0.00 0.00 0.00 3.97
911 1088 2.567169 CCCCAAAACTTCTCAATTCCCC 59.433 50.000 0.00 0.00 0.00 4.81
912 1089 3.238597 CCCAAAACTTCTCAATTCCCCA 58.761 45.455 0.00 0.00 0.00 4.96
913 1090 3.645687 CCCAAAACTTCTCAATTCCCCAA 59.354 43.478 0.00 0.00 0.00 4.12
914 1091 4.503123 CCCAAAACTTCTCAATTCCCCAAC 60.503 45.833 0.00 0.00 0.00 3.77
915 1092 4.100808 CCAAAACTTCTCAATTCCCCAACA 59.899 41.667 0.00 0.00 0.00 3.33
916 1093 5.396213 CCAAAACTTCTCAATTCCCCAACAA 60.396 40.000 0.00 0.00 0.00 2.83
917 1094 5.948742 AAACTTCTCAATTCCCCAACAAA 57.051 34.783 0.00 0.00 0.00 2.83
918 1095 5.948742 AACTTCTCAATTCCCCAACAAAA 57.051 34.783 0.00 0.00 0.00 2.44
919 1096 6.499106 AACTTCTCAATTCCCCAACAAAAT 57.501 33.333 0.00 0.00 0.00 1.82
920 1097 6.101650 ACTTCTCAATTCCCCAACAAAATC 57.898 37.500 0.00 0.00 0.00 2.17
921 1098 5.012046 ACTTCTCAATTCCCCAACAAAATCC 59.988 40.000 0.00 0.00 0.00 3.01
946 1123 4.657969 TCAATTCCCCAACAAAATCCAACT 59.342 37.500 0.00 0.00 0.00 3.16
972 1154 2.766229 GCCTCCTCCTCTCCCACC 60.766 72.222 0.00 0.00 0.00 4.61
973 1155 2.443016 CCTCCTCCTCTCCCACCG 60.443 72.222 0.00 0.00 0.00 4.94
1151 1335 1.066257 GAATCCGCCGTACCGCTAA 59.934 57.895 4.69 0.00 0.00 3.09
1249 1439 1.894756 CGAGCTCCCCTCCTACTCG 60.895 68.421 8.47 0.00 43.46 4.18
1481 1678 2.294078 GGTGGCTCTAGGTGCTGGT 61.294 63.158 8.19 0.00 0.00 4.00
1514 1711 4.400961 GCTGTTCCAGGGCGAGCT 62.401 66.667 0.00 0.00 31.21 4.09
1563 1760 1.519455 GGTCATCAACGGCGAGGAG 60.519 63.158 16.62 0.00 0.00 3.69
1564 1761 1.519455 GTCATCAACGGCGAGGAGG 60.519 63.158 16.62 12.43 0.00 4.30
1565 1762 1.680989 TCATCAACGGCGAGGAGGA 60.681 57.895 16.62 14.75 0.00 3.71
1566 1763 1.227089 CATCAACGGCGAGGAGGAG 60.227 63.158 16.62 1.27 0.00 3.69
1567 1764 2.427245 ATCAACGGCGAGGAGGAGG 61.427 63.158 16.62 0.00 0.00 4.30
1568 1765 2.856039 ATCAACGGCGAGGAGGAGGA 62.856 60.000 16.62 0.00 0.00 3.71
1569 1766 2.756283 AACGGCGAGGAGGAGGAG 60.756 66.667 16.62 0.00 0.00 3.69
1630 1833 2.125106 GGAGCACCATCACGGGAC 60.125 66.667 0.00 0.00 40.22 4.46
1833 2036 3.117171 GCTCTGCGCTGGTGAGTG 61.117 66.667 14.70 1.98 35.14 3.51
1856 2059 3.077359 GACACTTCCTCCAATCCAACTG 58.923 50.000 0.00 0.00 0.00 3.16
1893 2100 4.870363 TCTGAAATTTGTTGCCTAACTGC 58.130 39.130 0.00 0.00 37.68 4.40
1896 2103 2.008242 ATTTGTTGCCTAACTGCCCA 57.992 45.000 0.00 0.00 37.68 5.36
2047 2278 0.673437 ACAGTTTGCGTTGGAATGGG 59.327 50.000 0.00 0.00 0.00 4.00
2053 2284 1.173043 TGCGTTGGAATGGGAATGTC 58.827 50.000 0.00 0.00 0.00 3.06
2054 2285 1.173043 GCGTTGGAATGGGAATGTCA 58.827 50.000 0.00 0.00 0.00 3.58
2055 2286 1.133025 GCGTTGGAATGGGAATGTCAG 59.867 52.381 0.00 0.00 0.00 3.51
2107 2338 4.019792 TGATTGCTCAAGGTAGCTGAAA 57.980 40.909 0.00 0.00 43.19 2.69
2230 2466 7.158021 AGAGAGTAAGTGGAATCTGAAAACAG 58.842 38.462 0.00 0.00 0.00 3.16
2388 2625 8.683615 CCCAGGTCCTTAAGTAATTATTTTGAC 58.316 37.037 0.97 4.48 0.00 3.18
2456 2693 2.426024 CAATTCCCAGGCTTCTCATGTG 59.574 50.000 0.00 0.00 0.00 3.21
2457 2694 1.067295 TTCCCAGGCTTCTCATGTGT 58.933 50.000 0.00 0.00 0.00 3.72
2554 2793 7.667575 AGGAGTTGGCACCTATATATATCTG 57.332 40.000 0.00 0.00 33.85 2.90
2618 2857 3.996825 GCACCTGCTGTTTAATCGG 57.003 52.632 0.00 0.00 38.21 4.18
2637 2876 1.547901 GGTCCAGTTTTGCCTAGCCTT 60.548 52.381 0.00 0.00 0.00 4.35
2644 2883 2.419011 TTTGCCTAGCCTTCCCGCAA 62.419 55.000 0.00 0.00 37.65 4.85
2765 3004 7.598869 TCGTATAGATGGCAGTTTCATGATTAC 59.401 37.037 0.00 0.00 0.00 1.89
2783 3022 9.590088 CATGATTACGAAGTCATTATTCATGTG 57.410 33.333 0.00 0.00 43.93 3.21
2788 3027 7.202016 ACGAAGTCATTATTCATGTGTGTTT 57.798 32.000 0.00 0.00 29.74 2.83
2815 3054 8.270744 AGAATCAGTATAATCCTTGCAAGAAGT 58.729 33.333 28.05 9.90 0.00 3.01
2828 3067 7.277981 TCCTTGCAAGAAGTACGAGAAATAATC 59.722 37.037 28.05 0.00 0.00 1.75
2903 3148 3.069872 TGGTTTGCAGTGAATTGCTCATT 59.930 39.130 0.00 0.00 44.38 2.57
2958 3204 8.804743 GCTGTTGAAATTGTCTCATTTGATATG 58.195 33.333 0.00 0.00 0.00 1.78
3128 3385 9.541143 TGGCCTTTTATTTCAAGTTTCTTAAAG 57.459 29.630 3.32 0.00 0.00 1.85
3129 3386 8.495949 GGCCTTTTATTTCAAGTTTCTTAAAGC 58.504 33.333 0.00 0.00 0.00 3.51
3137 3394 6.780706 TCAAGTTTCTTAAAGCTAAGTCCG 57.219 37.500 0.00 0.00 36.63 4.79
3138 3395 6.518493 TCAAGTTTCTTAAAGCTAAGTCCGA 58.482 36.000 0.00 0.00 36.63 4.55
3139 3396 6.645415 TCAAGTTTCTTAAAGCTAAGTCCGAG 59.355 38.462 0.00 0.00 36.63 4.63
3140 3397 5.480205 AGTTTCTTAAAGCTAAGTCCGAGG 58.520 41.667 0.00 0.00 36.63 4.63
3141 3398 5.011840 AGTTTCTTAAAGCTAAGTCCGAGGT 59.988 40.000 0.00 0.00 36.63 3.85
3143 3400 5.069501 TCTTAAAGCTAAGTCCGAGGTTC 57.930 43.478 0.00 0.00 36.63 3.62
3146 3403 3.983044 AAGCTAAGTCCGAGGTTCATT 57.017 42.857 0.00 0.00 28.63 2.57
3147 3404 3.983044 AGCTAAGTCCGAGGTTCATTT 57.017 42.857 0.00 0.00 0.00 2.32
3148 3405 4.287766 AGCTAAGTCCGAGGTTCATTTT 57.712 40.909 0.00 0.00 0.00 1.82
3149 3406 4.652822 AGCTAAGTCCGAGGTTCATTTTT 58.347 39.130 0.00 0.00 0.00 1.94
3150 3407 4.455877 AGCTAAGTCCGAGGTTCATTTTTG 59.544 41.667 0.00 0.00 0.00 2.44
3151 3408 4.379499 GCTAAGTCCGAGGTTCATTTTTGG 60.379 45.833 0.00 0.00 0.00 3.28
3152 3409 2.514803 AGTCCGAGGTTCATTTTTGGG 58.485 47.619 0.00 0.00 0.00 4.12
3153 3410 1.544246 GTCCGAGGTTCATTTTTGGGG 59.456 52.381 0.00 0.00 0.00 4.96
3154 3411 1.146152 TCCGAGGTTCATTTTTGGGGT 59.854 47.619 0.00 0.00 0.00 4.95
3155 3412 2.375845 TCCGAGGTTCATTTTTGGGGTA 59.624 45.455 0.00 0.00 0.00 3.69
3156 3413 2.490509 CCGAGGTTCATTTTTGGGGTAC 59.509 50.000 0.00 0.00 0.00 3.34
3157 3414 3.418047 CGAGGTTCATTTTTGGGGTACT 58.582 45.455 0.00 0.00 0.00 2.73
3158 3415 3.190535 CGAGGTTCATTTTTGGGGTACTG 59.809 47.826 0.00 0.00 0.00 2.74
3163 3420 5.279106 GGTTCATTTTTGGGGTACTGGTTAC 60.279 44.000 0.00 0.00 0.00 2.50
3164 3421 5.063017 TCATTTTTGGGGTACTGGTTACA 57.937 39.130 0.00 0.00 31.46 2.41
3165 3422 5.646215 TCATTTTTGGGGTACTGGTTACAT 58.354 37.500 0.00 0.00 31.46 2.29
3166 3423 6.078664 TCATTTTTGGGGTACTGGTTACATT 58.921 36.000 0.00 0.00 31.46 2.71
3167 3424 7.239438 TCATTTTTGGGGTACTGGTTACATTA 58.761 34.615 0.00 0.00 31.46 1.90
3168 3425 7.896496 TCATTTTTGGGGTACTGGTTACATTAT 59.104 33.333 0.00 0.00 31.46 1.28
3169 3426 7.469537 TTTTTGGGGTACTGGTTACATTATG 57.530 36.000 0.00 0.00 31.46 1.90
3170 3427 6.390048 TTTGGGGTACTGGTTACATTATGA 57.610 37.500 0.00 0.00 31.46 2.15
3171 3428 6.584471 TTGGGGTACTGGTTACATTATGAT 57.416 37.500 0.00 0.00 31.46 2.45
3227 3495 3.067320 GGATCTTGTTTGCAATCCTAGCC 59.933 47.826 0.00 0.00 33.26 3.93
3228 3496 3.439857 TCTTGTTTGCAATCCTAGCCT 57.560 42.857 0.00 0.00 33.65 4.58
3240 3508 4.814224 ATCCTAGCCTCTCTTCTTCTCT 57.186 45.455 0.00 0.00 0.00 3.10
3390 3658 1.812708 GCAAAGTACCCAACCACTCGT 60.813 52.381 0.00 0.00 0.00 4.18
3393 3661 1.119574 AGTACCCAACCACTCGTGCT 61.120 55.000 0.00 0.00 0.00 4.40
3439 3707 4.815308 GCTCGGTTATGTAGTCTCTGTAGA 59.185 45.833 0.00 0.00 0.00 2.59
3459 3727 1.933021 ACCGGATCCTTACTGTGTCA 58.067 50.000 9.46 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.765795 CCTACCAATTAAGACTTGACTAATAGG 57.234 37.037 0.00 0.00 0.00 2.57
101 102 1.132624 GGGATAAGCTACCCCTACCCA 60.133 57.143 11.18 0.00 40.19 4.51
102 103 1.132624 TGGGATAAGCTACCCCTACCC 60.133 57.143 17.26 10.29 45.01 3.69
104 105 3.315596 AGTTGGGATAAGCTACCCCTAC 58.684 50.000 18.19 18.19 45.01 3.18
108 109 9.043548 TCTATAATAAGTTGGGATAAGCTACCC 57.956 37.037 14.32 14.32 45.74 3.69
112 113 9.794719 GGTTTCTATAATAAGTTGGGATAAGCT 57.205 33.333 0.00 0.00 0.00 3.74
113 114 9.569122 TGGTTTCTATAATAAGTTGGGATAAGC 57.431 33.333 0.00 0.00 0.00 3.09
117 118 7.582719 TGCTGGTTTCTATAATAAGTTGGGAT 58.417 34.615 0.00 0.00 0.00 3.85
118 119 6.964464 TGCTGGTTTCTATAATAAGTTGGGA 58.036 36.000 0.00 0.00 0.00 4.37
119 120 7.639113 TTGCTGGTTTCTATAATAAGTTGGG 57.361 36.000 0.00 0.00 0.00 4.12
120 121 9.573133 CTTTTGCTGGTTTCTATAATAAGTTGG 57.427 33.333 0.00 0.00 0.00 3.77
128 130 7.214467 CCAGTTCTTTTGCTGGTTTCTATAA 57.786 36.000 2.66 0.00 45.28 0.98
146 148 5.413969 AACTACGTTTTAAGTGCCAGTTC 57.586 39.130 0.00 0.00 0.00 3.01
150 152 3.715495 TCGAACTACGTTTTAAGTGCCA 58.285 40.909 0.00 0.00 43.13 4.92
163 165 7.823149 TCTTGTAATTTTAGCCTCGAACTAC 57.177 36.000 0.00 0.00 0.00 2.73
167 169 6.035650 CGTGATCTTGTAATTTTAGCCTCGAA 59.964 38.462 0.00 0.00 0.00 3.71
200 202 0.824759 AGGCGATTACCTGTCCTCAC 59.175 55.000 0.00 0.00 39.13 3.51
207 209 5.352569 GGAATCATATTGAGGCGATTACCTG 59.647 44.000 0.00 0.00 41.32 4.00
283 285 8.097791 TGGCCTTTACTACTATTTAGGAACAT 57.902 34.615 3.32 0.00 0.00 2.71
284 286 7.365295 CCTGGCCTTTACTACTATTTAGGAACA 60.365 40.741 3.32 0.00 0.00 3.18
285 287 6.990939 CCTGGCCTTTACTACTATTTAGGAAC 59.009 42.308 3.32 0.00 0.00 3.62
286 288 6.904654 TCCTGGCCTTTACTACTATTTAGGAA 59.095 38.462 3.32 0.00 0.00 3.36
301 303 4.358102 AGGGACTTCCTGGCCTTT 57.642 55.556 3.32 0.00 46.07 3.11
312 314 4.348020 TGTTGTCCTAGGAATAGGGACT 57.652 45.455 14.65 0.00 46.76 3.85
326 328 5.501156 AGGATTCTAGGAATGTTGTTGTCC 58.499 41.667 0.00 0.00 0.00 4.02
346 348 1.689575 CGGAAGGGAGAGGATTGAGGA 60.690 57.143 0.00 0.00 0.00 3.71
347 349 0.755686 CGGAAGGGAGAGGATTGAGG 59.244 60.000 0.00 0.00 0.00 3.86
351 355 0.340208 AGGTCGGAAGGGAGAGGATT 59.660 55.000 0.00 0.00 0.00 3.01
365 369 0.723414 CATGTTGTAGCAGCAGGTCG 59.277 55.000 0.00 0.00 0.00 4.79
375 379 2.671396 GTGTAAGGTCGGCATGTTGTAG 59.329 50.000 0.00 0.00 0.00 2.74
385 389 1.475682 GTGTAGAGGGTGTAAGGTCGG 59.524 57.143 0.00 0.00 0.00 4.79
387 391 1.135170 GCGTGTAGAGGGTGTAAGGTC 60.135 57.143 0.00 0.00 0.00 3.85
389 393 0.175073 GGCGTGTAGAGGGTGTAAGG 59.825 60.000 0.00 0.00 0.00 2.69
400 404 4.271049 CCATGAGTTCTTATTGGCGTGTAG 59.729 45.833 0.00 0.00 0.00 2.74
527 532 3.038017 GCGGGAAAAACTAAAACGTGTC 58.962 45.455 0.00 0.00 0.00 3.67
528 533 2.422832 TGCGGGAAAAACTAAAACGTGT 59.577 40.909 0.00 0.00 0.00 4.49
529 534 3.067721 TGCGGGAAAAACTAAAACGTG 57.932 42.857 0.00 0.00 0.00 4.49
530 535 3.779271 TTGCGGGAAAAACTAAAACGT 57.221 38.095 0.00 0.00 0.00 3.99
531 536 5.451828 TTTTTGCGGGAAAAACTAAAACG 57.548 34.783 14.93 0.00 38.38 3.60
550 555 9.124807 CAAACTAAAACGTGTCTTCTTCTTTTT 57.875 29.630 0.00 0.00 0.00 1.94
551 556 8.294577 ACAAACTAAAACGTGTCTTCTTCTTTT 58.705 29.630 0.00 0.00 0.00 2.27
552 557 7.813645 ACAAACTAAAACGTGTCTTCTTCTTT 58.186 30.769 0.00 0.00 0.00 2.52
553 558 7.373778 ACAAACTAAAACGTGTCTTCTTCTT 57.626 32.000 0.00 0.00 0.00 2.52
554 559 6.980051 ACAAACTAAAACGTGTCTTCTTCT 57.020 33.333 0.00 0.00 0.00 2.85
555 560 7.536281 ACAAACAAACTAAAACGTGTCTTCTTC 59.464 33.333 0.00 0.00 0.00 2.87
556 561 7.364970 ACAAACAAACTAAAACGTGTCTTCTT 58.635 30.769 0.00 0.00 0.00 2.52
557 562 6.905578 ACAAACAAACTAAAACGTGTCTTCT 58.094 32.000 0.00 0.00 0.00 2.85
558 563 7.324135 TGAACAAACAAACTAAAACGTGTCTTC 59.676 33.333 0.00 0.00 0.00 2.87
559 564 7.113825 GTGAACAAACAAACTAAAACGTGTCTT 59.886 33.333 0.00 0.00 0.00 3.01
560 565 6.579666 GTGAACAAACAAACTAAAACGTGTCT 59.420 34.615 0.00 0.00 0.00 3.41
561 566 6.579666 AGTGAACAAACAAACTAAAACGTGTC 59.420 34.615 0.00 0.00 0.00 3.67
582 587 7.400599 ACTACATACGGACTGAAATAAGTGA 57.599 36.000 0.00 0.00 0.00 3.41
645 650 8.272889 AGTATCCTTCTTAAAATGTAACCCCTC 58.727 37.037 0.00 0.00 0.00 4.30
689 858 9.768662 ACTCTTTCTGTTGCATAATTTTTCATT 57.231 25.926 0.00 0.00 0.00 2.57
706 875 1.740025 GATTCGGGGCAACTCTTTCTG 59.260 52.381 0.00 0.00 31.17 3.02
715 884 1.824230 CTGGATTTTGATTCGGGGCAA 59.176 47.619 0.00 0.00 0.00 4.52
720 889 6.512415 GCAGATCTTACTGGATTTTGATTCGG 60.512 42.308 0.00 0.00 38.22 4.30
724 893 6.656902 TCTGCAGATCTTACTGGATTTTGAT 58.343 36.000 13.74 0.00 37.57 2.57
732 901 6.154877 AGGATGATATCTGCAGATCTTACTGG 59.845 42.308 31.92 0.00 38.22 4.00
739 908 4.439974 GGTCGAGGATGATATCTGCAGATC 60.440 50.000 31.92 20.33 36.05 2.75
747 916 1.402984 GCACGGGTCGAGGATGATATC 60.403 57.143 0.00 0.00 0.00 1.63
750 919 2.815308 GCACGGGTCGAGGATGAT 59.185 61.111 0.00 0.00 0.00 2.45
800 977 2.989253 GCGGTTGGGTTCAAGGGG 60.989 66.667 0.00 0.00 32.92 4.79
907 1084 3.558608 ATTGAGGGATTTTGTTGGGGA 57.441 42.857 0.00 0.00 0.00 4.81
908 1085 3.055167 GGAATTGAGGGATTTTGTTGGGG 60.055 47.826 0.00 0.00 0.00 4.96
909 1086 3.055167 GGGAATTGAGGGATTTTGTTGGG 60.055 47.826 0.00 0.00 0.00 4.12
910 1087 3.055167 GGGGAATTGAGGGATTTTGTTGG 60.055 47.826 0.00 0.00 0.00 3.77
911 1088 3.582208 TGGGGAATTGAGGGATTTTGTTG 59.418 43.478 0.00 0.00 0.00 3.33
912 1089 3.868062 TGGGGAATTGAGGGATTTTGTT 58.132 40.909 0.00 0.00 0.00 2.83
913 1090 3.558608 TGGGGAATTGAGGGATTTTGT 57.441 42.857 0.00 0.00 0.00 2.83
914 1091 3.582208 TGTTGGGGAATTGAGGGATTTTG 59.418 43.478 0.00 0.00 0.00 2.44
915 1092 3.868062 TGTTGGGGAATTGAGGGATTTT 58.132 40.909 0.00 0.00 0.00 1.82
916 1093 3.558608 TGTTGGGGAATTGAGGGATTT 57.441 42.857 0.00 0.00 0.00 2.17
917 1094 3.558608 TTGTTGGGGAATTGAGGGATT 57.441 42.857 0.00 0.00 0.00 3.01
918 1095 3.558608 TTTGTTGGGGAATTGAGGGAT 57.441 42.857 0.00 0.00 0.00 3.85
919 1096 3.336509 TTTTGTTGGGGAATTGAGGGA 57.663 42.857 0.00 0.00 0.00 4.20
920 1097 3.055167 GGATTTTGTTGGGGAATTGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
921 1098 3.582208 TGGATTTTGTTGGGGAATTGAGG 59.418 43.478 0.00 0.00 0.00 3.86
1151 1335 2.193536 GTGCGGGCAGAAAACCAGT 61.194 57.895 0.00 0.00 0.00 4.00
1249 1439 1.152419 GTAGGAGGAGGAGGAGCCC 60.152 68.421 0.00 0.00 37.37 5.19
1514 1711 4.082523 CCTTCCGCCTCTTCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
1572 1769 2.904866 CTCTCGCTCTCCTCCCCG 60.905 72.222 0.00 0.00 0.00 5.73
1833 2036 0.991920 TGGATTGGAGGAAGTGTCCC 59.008 55.000 0.00 0.00 46.30 4.46
1856 2059 6.473397 AATTTCAGAACATCTTCAGACGAC 57.527 37.500 0.00 0.00 0.00 4.34
1893 2100 2.350772 GCACGAACAAACAGAGATTGGG 60.351 50.000 0.00 0.00 32.02 4.12
1896 2103 2.210116 ACGCACGAACAAACAGAGATT 58.790 42.857 0.00 0.00 0.00 2.40
2074 2305 4.707030 TGAGCAATCATCATCCAAACAC 57.293 40.909 0.00 0.00 0.00 3.32
2107 2338 8.850156 AGTGAGTTATACTGATTGCAAGTTTTT 58.150 29.630 4.94 0.00 0.00 1.94
2335 2572 4.633126 CCAAGTTGATCGTCAGACATCAAT 59.367 41.667 21.39 11.02 40.33 2.57
2388 2625 7.064016 GCTAAGTTAGAAAGTCTCAGAATGTGG 59.936 40.741 14.27 0.00 37.40 4.17
2474 2711 3.119743 TCAGCCTGCAATCTGAAAATTCG 60.120 43.478 13.35 0.00 36.50 3.34
2554 2793 2.784347 AGCTAACTTGACCTTTCCAGC 58.216 47.619 0.00 0.00 0.00 4.85
2618 2857 1.813178 GAAGGCTAGGCAAAACTGGAC 59.187 52.381 19.70 0.00 0.00 4.02
2637 2876 7.827236 CCTATCCTATATTTGTTATTTGCGGGA 59.173 37.037 0.00 0.00 0.00 5.14
2765 3004 8.655970 TCTAAACACACATGAATAATGACTTCG 58.344 33.333 0.00 0.00 38.72 3.79
2783 3022 9.109393 TGCAAGGATTATACTGATTCTAAACAC 57.891 33.333 0.00 0.00 0.00 3.32
2788 3027 9.770097 CTTCTTGCAAGGATTATACTGATTCTA 57.230 33.333 25.73 0.00 0.00 2.10
2815 3054 6.095300 TCCAACAGTACCGATTATTTCTCGTA 59.905 38.462 0.00 0.00 34.36 3.43
2863 3103 2.235891 CCAGTACCCCAAAACTGAACC 58.764 52.381 4.11 0.00 44.79 3.62
2926 3171 6.822667 TGAGACAATTTCAACAGCATACAT 57.177 33.333 0.00 0.00 0.00 2.29
2958 3204 8.289939 AGCACATGGGATAATTGAATATCATC 57.710 34.615 0.00 0.00 34.58 2.92
2974 3224 2.795329 AGGTAAACTGAAGCACATGGG 58.205 47.619 0.00 0.00 0.00 4.00
2975 3225 5.699839 GTTTAGGTAAACTGAAGCACATGG 58.300 41.667 0.00 0.00 41.65 3.66
3060 3310 7.713507 TGCCCGTCCTTATATATAATACAATGC 59.286 37.037 5.64 9.61 0.00 3.56
3128 3385 4.379499 CCAAAAATGAACCTCGGACTTAGC 60.379 45.833 0.00 0.00 0.00 3.09
3129 3386 4.156008 CCCAAAAATGAACCTCGGACTTAG 59.844 45.833 0.00 0.00 0.00 2.18
3131 3388 2.890945 CCCAAAAATGAACCTCGGACTT 59.109 45.455 0.00 0.00 0.00 3.01
3132 3389 2.514803 CCCAAAAATGAACCTCGGACT 58.485 47.619 0.00 0.00 0.00 3.85
3134 3391 1.146152 ACCCCAAAAATGAACCTCGGA 59.854 47.619 0.00 0.00 0.00 4.55
3135 3392 1.627864 ACCCCAAAAATGAACCTCGG 58.372 50.000 0.00 0.00 0.00 4.63
3136 3393 3.190535 CAGTACCCCAAAAATGAACCTCG 59.809 47.826 0.00 0.00 0.00 4.63
3137 3394 3.509967 CCAGTACCCCAAAAATGAACCTC 59.490 47.826 0.00 0.00 0.00 3.85
3138 3395 3.116900 ACCAGTACCCCAAAAATGAACCT 60.117 43.478 0.00 0.00 0.00 3.50
3139 3396 3.236047 ACCAGTACCCCAAAAATGAACC 58.764 45.455 0.00 0.00 0.00 3.62
3140 3397 4.948341 AACCAGTACCCCAAAAATGAAC 57.052 40.909 0.00 0.00 0.00 3.18
3141 3398 5.455872 TGTAACCAGTACCCCAAAAATGAA 58.544 37.500 0.00 0.00 30.94 2.57
3143 3400 5.993748 ATGTAACCAGTACCCCAAAAATG 57.006 39.130 0.00 0.00 30.94 2.32
3146 3403 6.791371 TCATAATGTAACCAGTACCCCAAAA 58.209 36.000 0.00 0.00 30.94 2.44
3147 3404 6.390048 TCATAATGTAACCAGTACCCCAAA 57.610 37.500 0.00 0.00 30.94 3.28
3148 3405 6.584471 ATCATAATGTAACCAGTACCCCAA 57.416 37.500 0.00 0.00 30.94 4.12
3149 3406 6.584471 AATCATAATGTAACCAGTACCCCA 57.416 37.500 0.00 0.00 30.94 4.96
3150 3407 7.891498 AAAATCATAATGTAACCAGTACCCC 57.109 36.000 0.00 0.00 30.94 4.95
3165 3422 8.408601 GCTCCAGCTTTCAGAATAAAATCATAA 58.591 33.333 0.00 0.00 38.21 1.90
3166 3423 7.557358 TGCTCCAGCTTTCAGAATAAAATCATA 59.443 33.333 0.00 0.00 42.66 2.15
3167 3424 6.379133 TGCTCCAGCTTTCAGAATAAAATCAT 59.621 34.615 0.00 0.00 42.66 2.45
3168 3425 5.711506 TGCTCCAGCTTTCAGAATAAAATCA 59.288 36.000 0.00 0.00 42.66 2.57
3169 3426 6.199937 TGCTCCAGCTTTCAGAATAAAATC 57.800 37.500 0.00 0.00 42.66 2.17
3170 3427 6.210185 AGTTGCTCCAGCTTTCAGAATAAAAT 59.790 34.615 0.00 0.00 42.66 1.82
3171 3428 5.536161 AGTTGCTCCAGCTTTCAGAATAAAA 59.464 36.000 0.00 0.00 42.66 1.52
3228 3496 4.343231 ACATGCTCTCAGAGAAGAAGAGA 58.657 43.478 5.62 0.00 36.95 3.10
3240 3508 3.141398 GTGGTTCAAGAACATGCTCTCA 58.859 45.455 14.25 0.00 42.85 3.27
3439 3707 2.253610 TGACACAGTAAGGATCCGGTT 58.746 47.619 5.98 0.00 0.00 4.44
3459 3727 3.345737 CATCGCTGACGGTGTACAT 57.654 52.632 0.00 0.00 45.51 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.