Multiple sequence alignment - TraesCS2D01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G136100 chr2D 100.000 3250 0 0 1 3250 79943529 79940280 0.000000e+00 6002.0
1 TraesCS2D01G136100 chr2D 84.597 422 62 3 2751 3171 19070879 19071298 1.800000e-112 416.0
2 TraesCS2D01G136100 chr2D 91.713 181 15 0 2544 2724 79928828 79928648 5.380000e-63 252.0
3 TraesCS2D01G136100 chr2B 88.969 2511 187 45 4 2461 131311313 131308840 0.000000e+00 3020.0
4 TraesCS2D01G136100 chr2B 83.099 497 73 9 2761 3250 771981281 771981773 2.980000e-120 442.0
5 TraesCS2D01G136100 chr2A 88.875 1582 98 28 701 2264 80538067 80536546 0.000000e+00 1875.0
6 TraesCS2D01G136100 chr2A 91.429 315 16 4 3 306 80543065 80542751 3.880000e-114 422.0
7 TraesCS2D01G136100 chr2A 88.050 159 16 3 2544 2701 767758076 767757920 5.540000e-43 185.0
8 TraesCS2D01G136100 chr2A 90.909 66 4 2 2462 2527 767758180 767758117 1.610000e-13 87.9
9 TraesCS2D01G136100 chr6B 81.939 526 87 8 2730 3250 708058090 708057568 3.850000e-119 438.0
10 TraesCS2D01G136100 chr7D 82.869 467 73 6 2789 3250 5317200 5316736 2.330000e-111 412.0
11 TraesCS2D01G136100 chr7B 81.710 503 85 7 2751 3250 717869055 717868557 2.330000e-111 412.0
12 TraesCS2D01G136100 chr7A 80.952 525 90 8 2731 3250 113269608 113270127 1.090000e-109 407.0
13 TraesCS2D01G136100 chr4A 80.885 497 80 12 2763 3250 634283245 634282755 8.510000e-101 377.0
14 TraesCS2D01G136100 chr4A 80.684 497 81 13 2763 3250 634302298 634301808 3.960000e-99 372.0
15 TraesCS2D01G136100 chr4A 80.483 497 82 13 2763 3250 634319993 634319503 1.840000e-97 366.0
16 TraesCS2D01G136100 chrUn 76.113 247 44 14 2462 2701 31479156 31478918 7.370000e-22 115.0
17 TraesCS2D01G136100 chr1D 80.137 146 26 1 1541 1683 436968463 436968608 4.430000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G136100 chr2D 79940280 79943529 3249 True 6002 6002 100.000 1 3250 1 chr2D.!!$R2 3249
1 TraesCS2D01G136100 chr2B 131308840 131311313 2473 True 3020 3020 88.969 4 2461 1 chr2B.!!$R1 2457
2 TraesCS2D01G136100 chr2A 80536546 80538067 1521 True 1875 1875 88.875 701 2264 1 chr2A.!!$R1 1563
3 TraesCS2D01G136100 chr6B 708057568 708058090 522 True 438 438 81.939 2730 3250 1 chr6B.!!$R1 520
4 TraesCS2D01G136100 chr7A 113269608 113270127 519 False 407 407 80.952 2731 3250 1 chr7A.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 887 0.03831 TCTCTTCTCCTCGCACTCCA 59.962 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 2623 0.104304 GCCGCAAACCTAGCTAGCTA 59.896 55.0 22.85 22.85 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.287867 AAGGCCGATCAATGTTCATCT 57.712 42.857 0.00 0.00 0.00 2.90
28 29 4.371786 GCCGATCAATGTTCATCTACTCA 58.628 43.478 0.00 0.00 0.00 3.41
32 33 6.587990 CCGATCAATGTTCATCTACTCATACC 59.412 42.308 0.00 0.00 0.00 2.73
42 43 6.280643 TCATCTACTCATACCATTTCCAACG 58.719 40.000 0.00 0.00 0.00 4.10
47 48 4.935808 ACTCATACCATTTCCAACGAAGAC 59.064 41.667 0.00 0.00 0.00 3.01
56 57 1.000163 TCCAACGAAGACAGAGAGCAC 60.000 52.381 0.00 0.00 0.00 4.40
58 59 0.039074 AACGAAGACAGAGAGCACGG 60.039 55.000 0.00 0.00 0.00 4.94
59 60 1.803519 CGAAGACAGAGAGCACGGC 60.804 63.158 0.00 0.00 0.00 5.68
65 66 1.667830 CAGAGAGCACGGCCGAAAA 60.668 57.895 35.90 0.00 0.00 2.29
77 78 1.168714 GCCGAAAAGCAGATCCAAGT 58.831 50.000 0.00 0.00 0.00 3.16
80 81 3.012518 CCGAAAAGCAGATCCAAGTCAT 58.987 45.455 0.00 0.00 0.00 3.06
81 82 3.441572 CCGAAAAGCAGATCCAAGTCATT 59.558 43.478 0.00 0.00 0.00 2.57
86 87 1.674962 GCAGATCCAAGTCATTGAGGC 59.325 52.381 0.00 0.00 38.83 4.70
111 112 0.593128 CAAGTTCTTTGGACGGCAGG 59.407 55.000 0.00 0.00 32.95 4.85
151 152 1.751927 CCATGCCCTCCAGAAGCAC 60.752 63.158 0.00 0.00 39.77 4.40
153 154 2.988839 ATGCCCTCCAGAAGCACCC 61.989 63.158 0.00 0.00 39.77 4.61
155 156 4.101448 CCCTCCAGAAGCACCCGG 62.101 72.222 0.00 0.00 0.00 5.73
156 157 4.785453 CCTCCAGAAGCACCCGGC 62.785 72.222 0.00 0.00 45.30 6.13
175 176 4.991687 CCGGCTTAGATCTCCATAAGAAAC 59.008 45.833 0.00 0.00 37.61 2.78
176 177 5.221541 CCGGCTTAGATCTCCATAAGAAACT 60.222 44.000 0.00 0.00 37.61 2.66
178 179 5.468409 GGCTTAGATCTCCATAAGAAACTGC 59.532 44.000 0.00 0.00 37.61 4.40
180 181 4.065321 AGATCTCCATAAGAAACTGCGG 57.935 45.455 0.00 0.00 37.61 5.69
223 224 1.588082 GTCCAAATGTGCAGCCTGG 59.412 57.895 0.00 0.00 0.00 4.45
224 225 0.895100 GTCCAAATGTGCAGCCTGGA 60.895 55.000 0.00 3.25 33.77 3.86
234 235 0.761187 GCAGCCTGGACATGGAGATA 59.239 55.000 0.00 0.00 0.00 1.98
236 237 2.809665 GCAGCCTGGACATGGAGATAAG 60.810 54.545 0.00 0.00 0.00 1.73
246 247 3.780294 ACATGGAGATAAGGTTGCTGGTA 59.220 43.478 0.00 0.00 0.00 3.25
249 250 3.451178 TGGAGATAAGGTTGCTGGTAGTC 59.549 47.826 0.00 0.00 0.00 2.59
274 275 7.123547 TCTGTTTAGGAAAGACAATGTGGTTTT 59.876 33.333 0.00 0.00 0.00 2.43
284 285 9.874205 AAAGACAATGTGGTTTTTGATATATGG 57.126 29.630 0.00 0.00 0.00 2.74
291 292 8.512966 TGTGGTTTTTGATATATGGAAATCGA 57.487 30.769 0.00 0.00 0.00 3.59
347 355 6.875726 TGAAGATGAAATATGAGGGAATAGCG 59.124 38.462 0.00 0.00 0.00 4.26
368 376 2.994578 GGAGAGAACGAGTTAACAAGCC 59.005 50.000 8.61 0.00 0.00 4.35
387 395 1.801332 GAAGGCGAGCGTCACTAGA 59.199 57.895 0.00 0.00 0.00 2.43
394 402 1.387084 CGAGCGTCACTAGAAAGCAAC 59.613 52.381 0.00 0.00 33.64 4.17
398 406 2.338500 CGTCACTAGAAAGCAACTCCC 58.662 52.381 0.00 0.00 0.00 4.30
400 408 3.591023 GTCACTAGAAAGCAACTCCCTC 58.409 50.000 0.00 0.00 0.00 4.30
407 415 0.402121 AAGCAACTCCCTCTTCCACC 59.598 55.000 0.00 0.00 0.00 4.61
410 418 2.943978 AACTCCCTCTTCCACCGCG 61.944 63.158 0.00 0.00 0.00 6.46
429 437 1.869690 GCAACCTCGAAGCCAACTC 59.130 57.895 0.00 0.00 0.00 3.01
430 438 0.884704 GCAACCTCGAAGCCAACTCA 60.885 55.000 0.00 0.00 0.00 3.41
435 443 2.026822 ACCTCGAAGCCAACTCATCAAT 60.027 45.455 0.00 0.00 0.00 2.57
450 458 3.758023 TCATCAATGGTTCGTTGCAGATT 59.242 39.130 0.00 0.00 31.18 2.40
499 507 0.455410 TGGCACGCCAAGATATTTGC 59.545 50.000 8.67 0.00 44.12 3.68
500 508 0.455410 GGCACGCCAAGATATTTGCA 59.545 50.000 2.36 0.00 35.81 4.08
501 509 1.534595 GGCACGCCAAGATATTTGCAG 60.535 52.381 2.36 0.00 35.81 4.41
517 525 1.379916 CAGGGGAACTGCATCACCA 59.620 57.895 11.19 0.00 45.94 4.17
544 552 9.875691 GAATTGGAAATTTTCATAGTAAAGCCT 57.124 29.630 11.09 0.00 0.00 4.58
566 574 3.318839 TGCAGGTCAATCTGGTTTTTGAG 59.681 43.478 0.00 0.00 32.79 3.02
578 586 5.239963 TCTGGTTTTTGAGTTATCCGGTTTC 59.760 40.000 0.00 0.00 0.00 2.78
583 591 7.042992 GGTTTTTGAGTTATCCGGTTTCAAAAG 60.043 37.037 21.18 0.00 44.02 2.27
584 592 4.759516 TGAGTTATCCGGTTTCAAAAGC 57.240 40.909 0.00 0.00 0.00 3.51
591 599 2.106857 TCCGGTTTCAAAAGCTAAGGGA 59.893 45.455 0.00 0.34 34.41 4.20
593 601 3.146847 CGGTTTCAAAAGCTAAGGGACT 58.853 45.455 0.00 0.00 35.31 3.85
594 602 4.320870 CGGTTTCAAAAGCTAAGGGACTA 58.679 43.478 0.00 0.00 33.42 2.59
595 603 4.758165 CGGTTTCAAAAGCTAAGGGACTAA 59.242 41.667 0.00 0.00 33.42 2.24
596 604 5.106673 CGGTTTCAAAAGCTAAGGGACTAAG 60.107 44.000 0.00 0.00 33.42 2.18
637 645 8.056407 AGCTGAAGGACCATTTTTATACTTTC 57.944 34.615 0.00 0.00 0.00 2.62
668 676 9.939802 AAATCAAAGGACGATAAGTTTAGTACT 57.060 29.630 0.00 0.00 39.32 2.73
709 723 3.246699 TCGAGTTGCTCAGTTTTTAACCG 59.753 43.478 0.00 0.00 0.00 4.44
749 765 1.225426 GTGAGATCATGCTGGCCCA 59.775 57.895 0.00 0.00 0.00 5.36
783 799 4.389576 CGCGCCACAAACTGCTCC 62.390 66.667 0.00 0.00 0.00 4.70
784 800 3.286751 GCGCCACAAACTGCTCCA 61.287 61.111 0.00 0.00 0.00 3.86
785 801 2.629656 GCGCCACAAACTGCTCCAT 61.630 57.895 0.00 0.00 0.00 3.41
792 808 0.459585 CAAACTGCTCCATGCCATGC 60.460 55.000 0.00 0.00 42.00 4.06
864 880 3.003897 CCGATAAACCTCTCTTCTCCTCG 59.996 52.174 0.00 0.00 0.00 4.63
870 886 0.738389 CTCTCTTCTCCTCGCACTCC 59.262 60.000 0.00 0.00 0.00 3.85
871 887 0.038310 TCTCTTCTCCTCGCACTCCA 59.962 55.000 0.00 0.00 0.00 3.86
1324 1340 3.788766 GCACGCGCGTCCAAGATT 61.789 61.111 35.61 5.82 0.00 2.40
1325 1341 2.449525 GCACGCGCGTCCAAGATTA 61.450 57.895 35.61 0.00 0.00 1.75
1326 1342 1.343821 CACGCGCGTCCAAGATTAC 59.656 57.895 35.61 0.00 0.00 1.89
1327 1343 1.808390 ACGCGCGTCCAAGATTACC 60.808 57.895 32.73 0.00 0.00 2.85
1358 1375 2.483288 GTTTGCGTGGTATGGCGG 59.517 61.111 0.00 0.00 0.00 6.13
1477 1494 5.934625 GCTTCCTCAATGTAACTTCTCTCAA 59.065 40.000 0.00 0.00 0.00 3.02
1480 1497 6.644347 TCCTCAATGTAACTTCTCTCAATCC 58.356 40.000 0.00 0.00 0.00 3.01
1487 1504 4.769345 AACTTCTCTCAATCCCATCTCC 57.231 45.455 0.00 0.00 0.00 3.71
1495 1512 2.374830 AATCCCATCTCCGCAGCTCG 62.375 60.000 0.00 0.00 38.08 5.03
1535 1552 9.569122 AACCAGACATAATTACAGTACTTGTTT 57.431 29.630 0.00 0.00 41.29 2.83
1558 1584 2.408050 AGTGAGCAACATCGTTCAGAC 58.592 47.619 0.00 0.00 0.00 3.51
1763 1789 2.489329 CTGGGATTTACACCAACTGCTG 59.511 50.000 0.00 0.00 36.09 4.41
1767 1819 0.667993 TTTACACCAACTGCTGCTGC 59.332 50.000 8.89 8.89 40.20 5.25
1819 1871 1.069823 CTGATCTTCGGGATGGGTCTG 59.930 57.143 0.00 0.00 34.33 3.51
1852 1904 3.335534 AGCAACGCGTCCAACGAC 61.336 61.111 14.44 0.00 46.05 4.34
1858 1910 4.681978 GCGTCCAACGACCTGCCT 62.682 66.667 3.28 0.00 46.05 4.75
1942 1995 1.610522 CCGATCCCAATCAAAGCATCC 59.389 52.381 0.00 0.00 31.76 3.51
1944 1997 3.496692 CCGATCCCAATCAAAGCATCCTA 60.497 47.826 0.00 0.00 31.76 2.94
1951 2004 4.866486 CCAATCAAAGCATCCTAAACAAGC 59.134 41.667 0.00 0.00 0.00 4.01
1956 2009 3.582714 AGCATCCTAAACAAGCTTTGC 57.417 42.857 7.28 7.28 29.98 3.68
1965 2021 7.496747 TCCTAAACAAGCTTTGCTACAAATTT 58.503 30.769 0.00 0.00 38.25 1.82
2021 2085 1.866853 CGTTTTTGCAGGAGAGGCCC 61.867 60.000 0.00 0.00 37.37 5.80
2060 2124 1.290324 GCTGGACGAGCTCAAGACA 59.710 57.895 15.40 5.91 45.21 3.41
2150 2214 3.680196 ACGGGGCTGGACCTCCTA 61.680 66.667 0.00 0.00 34.02 2.94
2159 2223 2.312390 CTGGACCTCCTAAGCTACTCC 58.688 57.143 0.00 0.00 36.82 3.85
2317 2381 7.895975 CATGTACATGTAGGTTGATATCTGG 57.104 40.000 24.91 0.00 34.23 3.86
2320 2388 6.609616 TGTACATGTAGGTTGATATCTGGTCA 59.390 38.462 5.62 0.00 0.00 4.02
2347 2415 1.653151 GACCCCGATGTGCTAAGAAC 58.347 55.000 0.00 0.00 0.00 3.01
2350 2418 1.656652 CCCGATGTGCTAAGAACAGG 58.343 55.000 0.00 0.00 0.00 4.00
2352 2420 2.354704 CCCGATGTGCTAAGAACAGGAA 60.355 50.000 0.00 0.00 0.00 3.36
2353 2421 3.334691 CCGATGTGCTAAGAACAGGAAA 58.665 45.455 0.00 0.00 0.00 3.13
2354 2422 3.125316 CCGATGTGCTAAGAACAGGAAAC 59.875 47.826 0.00 0.00 0.00 2.78
2356 2424 4.213270 CGATGTGCTAAGAACAGGAAACAA 59.787 41.667 0.00 0.00 0.00 2.83
2357 2425 5.106555 CGATGTGCTAAGAACAGGAAACAAT 60.107 40.000 0.00 0.00 0.00 2.71
2358 2426 5.689383 TGTGCTAAGAACAGGAAACAATC 57.311 39.130 0.00 0.00 0.00 2.67
2359 2427 4.213270 TGTGCTAAGAACAGGAAACAATCG 59.787 41.667 0.00 0.00 0.00 3.34
2360 2428 3.188460 TGCTAAGAACAGGAAACAATCGC 59.812 43.478 0.00 0.00 0.00 4.58
2361 2429 2.969443 AAGAACAGGAAACAATCGCG 57.031 45.000 0.00 0.00 0.00 5.87
2362 2430 1.156736 AGAACAGGAAACAATCGCGG 58.843 50.000 6.13 0.00 0.00 6.46
2363 2431 0.872388 GAACAGGAAACAATCGCGGT 59.128 50.000 6.13 0.00 0.00 5.68
2376 2444 1.153823 CGCGGTCGATTGGTTCTCT 60.154 57.895 0.00 0.00 38.10 3.10
2377 2445 1.140407 CGCGGTCGATTGGTTCTCTC 61.140 60.000 0.00 0.00 38.10 3.20
2378 2446 0.173708 GCGGTCGATTGGTTCTCTCT 59.826 55.000 0.00 0.00 0.00 3.10
2379 2447 1.404315 GCGGTCGATTGGTTCTCTCTT 60.404 52.381 0.00 0.00 0.00 2.85
2382 2450 3.732471 CGGTCGATTGGTTCTCTCTTCTC 60.732 52.174 0.00 0.00 0.00 2.87
2383 2451 3.430931 GTCGATTGGTTCTCTCTTCTCG 58.569 50.000 0.00 0.00 0.00 4.04
2384 2452 2.159366 TCGATTGGTTCTCTCTTCTCGC 60.159 50.000 0.00 0.00 0.00 5.03
2385 2453 2.416027 CGATTGGTTCTCTCTTCTCGCA 60.416 50.000 0.00 0.00 0.00 5.10
2386 2454 3.589988 GATTGGTTCTCTCTTCTCGCAA 58.410 45.455 0.00 0.00 0.00 4.85
2387 2455 2.440539 TGGTTCTCTCTTCTCGCAAC 57.559 50.000 0.00 0.00 0.00 4.17
2388 2456 1.335964 TGGTTCTCTCTTCTCGCAACG 60.336 52.381 0.00 0.00 0.00 4.10
2389 2457 1.068472 GGTTCTCTCTTCTCGCAACGA 60.068 52.381 0.00 0.00 0.00 3.85
2399 2467 4.104633 CGCAACGACGAGCACGAC 62.105 66.667 11.40 2.74 42.66 4.34
2406 2474 1.981668 GACGAGCACGACGAACATC 59.018 57.895 11.40 0.00 42.66 3.06
2439 2507 4.409247 ACAGTGTAGGAAGGAAGAACTTGT 59.591 41.667 0.00 0.00 0.00 3.16
2442 2510 5.367060 AGTGTAGGAAGGAAGAACTTGTTCT 59.633 40.000 9.93 9.93 0.00 3.01
2469 2537 8.836268 AACATTCATATGAAAAATGTTGCTGT 57.164 26.923 24.80 17.38 46.42 4.40
2470 2538 8.246908 ACATTCATATGAAAAATGTTGCTGTG 57.753 30.769 21.50 12.66 39.87 3.66
2471 2539 8.089597 ACATTCATATGAAAAATGTTGCTGTGA 58.910 29.630 21.50 0.00 39.87 3.58
2472 2540 9.093970 CATTCATATGAAAAATGTTGCTGTGAT 57.906 29.630 21.50 0.00 37.61 3.06
2473 2541 8.692110 TTCATATGAAAAATGTTGCTGTGATC 57.308 30.769 15.82 0.00 0.00 2.92
2474 2542 8.058667 TCATATGAAAAATGTTGCTGTGATCT 57.941 30.769 1.98 0.00 0.00 2.75
2475 2543 8.525316 TCATATGAAAAATGTTGCTGTGATCTT 58.475 29.630 1.98 0.00 0.00 2.40
2476 2544 8.804743 CATATGAAAAATGTTGCTGTGATCTTC 58.195 33.333 0.00 0.00 0.00 2.87
2477 2545 6.146601 TGAAAAATGTTGCTGTGATCTTCA 57.853 33.333 0.00 0.00 0.00 3.02
2478 2546 6.210796 TGAAAAATGTTGCTGTGATCTTCAG 58.789 36.000 12.03 12.03 36.18 3.02
2479 2547 5.779529 AAAATGTTGCTGTGATCTTCAGT 57.220 34.783 15.80 0.00 35.60 3.41
2480 2548 5.779529 AAATGTTGCTGTGATCTTCAGTT 57.220 34.783 15.80 4.08 35.60 3.16
2481 2549 5.368256 AATGTTGCTGTGATCTTCAGTTC 57.632 39.130 15.80 9.59 35.60 3.01
2482 2550 3.807553 TGTTGCTGTGATCTTCAGTTCA 58.192 40.909 15.80 11.23 35.60 3.18
2483 2551 3.811497 TGTTGCTGTGATCTTCAGTTCAG 59.189 43.478 15.80 0.00 35.60 3.02
2484 2552 4.060900 GTTGCTGTGATCTTCAGTTCAGA 58.939 43.478 15.80 0.00 35.60 3.27
2485 2553 3.922910 TGCTGTGATCTTCAGTTCAGAG 58.077 45.455 15.80 7.40 37.86 3.35
2486 2554 3.575687 TGCTGTGATCTTCAGTTCAGAGA 59.424 43.478 13.61 0.66 37.34 3.10
2487 2555 4.222366 TGCTGTGATCTTCAGTTCAGAGAT 59.778 41.667 13.61 0.00 37.34 2.75
2488 2556 5.177326 GCTGTGATCTTCAGTTCAGAGATT 58.823 41.667 13.61 0.00 37.34 2.40
2489 2557 5.291614 GCTGTGATCTTCAGTTCAGAGATTC 59.708 44.000 13.61 0.00 37.34 2.52
2490 2558 6.350629 TGTGATCTTCAGTTCAGAGATTCA 57.649 37.500 0.00 0.00 0.00 2.57
2491 2559 6.396450 TGTGATCTTCAGTTCAGAGATTCAG 58.604 40.000 0.00 0.00 0.00 3.02
2492 2560 6.014755 TGTGATCTTCAGTTCAGAGATTCAGT 60.015 38.462 0.00 0.00 0.00 3.41
2493 2561 7.177392 TGTGATCTTCAGTTCAGAGATTCAGTA 59.823 37.037 0.00 0.00 0.00 2.74
2494 2562 7.701924 GTGATCTTCAGTTCAGAGATTCAGTAG 59.298 40.741 0.00 0.00 0.00 2.57
2495 2563 6.522625 TCTTCAGTTCAGAGATTCAGTAGG 57.477 41.667 0.00 0.00 0.00 3.18
2496 2564 5.420421 TCTTCAGTTCAGAGATTCAGTAGGG 59.580 44.000 0.00 0.00 0.00 3.53
2497 2565 4.678256 TCAGTTCAGAGATTCAGTAGGGT 58.322 43.478 0.00 0.00 0.00 4.34
2498 2566 5.087323 TCAGTTCAGAGATTCAGTAGGGTT 58.913 41.667 0.00 0.00 0.00 4.11
2499 2567 5.544176 TCAGTTCAGAGATTCAGTAGGGTTT 59.456 40.000 0.00 0.00 0.00 3.27
2500 2568 6.043243 TCAGTTCAGAGATTCAGTAGGGTTTT 59.957 38.462 0.00 0.00 0.00 2.43
2501 2569 7.234782 TCAGTTCAGAGATTCAGTAGGGTTTTA 59.765 37.037 0.00 0.00 0.00 1.52
2502 2570 7.547370 CAGTTCAGAGATTCAGTAGGGTTTTAG 59.453 40.741 0.00 0.00 0.00 1.85
2503 2571 6.546428 TCAGAGATTCAGTAGGGTTTTAGG 57.454 41.667 0.00 0.00 0.00 2.69
2504 2572 6.023603 TCAGAGATTCAGTAGGGTTTTAGGT 58.976 40.000 0.00 0.00 0.00 3.08
2505 2573 6.070767 TCAGAGATTCAGTAGGGTTTTAGGTG 60.071 42.308 0.00 0.00 0.00 4.00
2506 2574 5.785940 AGAGATTCAGTAGGGTTTTAGGTGT 59.214 40.000 0.00 0.00 0.00 4.16
2507 2575 6.051179 AGATTCAGTAGGGTTTTAGGTGTC 57.949 41.667 0.00 0.00 0.00 3.67
2508 2576 3.947910 TCAGTAGGGTTTTAGGTGTCG 57.052 47.619 0.00 0.00 0.00 4.35
2509 2577 3.499338 TCAGTAGGGTTTTAGGTGTCGA 58.501 45.455 0.00 0.00 0.00 4.20
2510 2578 3.896888 TCAGTAGGGTTTTAGGTGTCGAA 59.103 43.478 0.00 0.00 0.00 3.71
2511 2579 4.344679 TCAGTAGGGTTTTAGGTGTCGAAA 59.655 41.667 0.00 0.00 0.00 3.46
2512 2580 5.058490 CAGTAGGGTTTTAGGTGTCGAAAA 58.942 41.667 0.00 0.00 0.00 2.29
2513 2581 5.178809 CAGTAGGGTTTTAGGTGTCGAAAAG 59.821 44.000 0.00 0.00 30.28 2.27
2514 2582 4.160642 AGGGTTTTAGGTGTCGAAAAGT 57.839 40.909 0.00 0.00 30.28 2.66
2515 2583 4.529897 AGGGTTTTAGGTGTCGAAAAGTT 58.470 39.130 0.00 0.00 30.28 2.66
2516 2584 4.577693 AGGGTTTTAGGTGTCGAAAAGTTC 59.422 41.667 0.00 0.00 30.28 3.01
2517 2585 4.336153 GGGTTTTAGGTGTCGAAAAGTTCA 59.664 41.667 0.00 0.00 30.28 3.18
2518 2586 5.505159 GGGTTTTAGGTGTCGAAAAGTTCAG 60.505 44.000 0.00 0.00 30.28 3.02
2519 2587 5.065602 GGTTTTAGGTGTCGAAAAGTTCAGT 59.934 40.000 0.00 0.00 30.28 3.41
2520 2588 6.403964 GGTTTTAGGTGTCGAAAAGTTCAGTT 60.404 38.462 0.00 0.00 30.28 3.16
2521 2589 6.746745 TTTAGGTGTCGAAAAGTTCAGTTT 57.253 33.333 0.00 0.00 0.00 2.66
2522 2590 4.877323 AGGTGTCGAAAAGTTCAGTTTC 57.123 40.909 0.00 0.00 0.00 2.78
2531 2599 6.585389 GAAAAGTTCAGTTTCGACACTAGT 57.415 37.500 3.46 0.00 0.00 2.57
2532 2600 5.968387 AAAGTTCAGTTTCGACACTAGTG 57.032 39.130 21.44 21.44 0.00 2.74
2533 2601 4.913335 AGTTCAGTTTCGACACTAGTGA 57.087 40.909 29.30 4.07 0.00 3.41
2534 2602 5.455056 AGTTCAGTTTCGACACTAGTGAT 57.545 39.130 29.30 13.33 0.00 3.06
2535 2603 5.844004 AGTTCAGTTTCGACACTAGTGATT 58.156 37.500 29.30 7.88 0.00 2.57
2536 2604 6.281405 AGTTCAGTTTCGACACTAGTGATTT 58.719 36.000 29.30 7.06 0.00 2.17
2537 2605 6.421202 AGTTCAGTTTCGACACTAGTGATTTC 59.579 38.462 29.30 15.05 0.00 2.17
2538 2606 6.085555 TCAGTTTCGACACTAGTGATTTCT 57.914 37.500 29.30 14.89 0.00 2.52
2539 2607 6.513180 TCAGTTTCGACACTAGTGATTTCTT 58.487 36.000 29.30 5.42 0.00 2.52
2540 2608 6.641314 TCAGTTTCGACACTAGTGATTTCTTC 59.359 38.462 29.30 13.62 0.00 2.87
2541 2609 6.420903 CAGTTTCGACACTAGTGATTTCTTCA 59.579 38.462 29.30 3.90 0.00 3.02
2542 2610 6.642950 AGTTTCGACACTAGTGATTTCTTCAG 59.357 38.462 29.30 10.96 34.17 3.02
2543 2611 5.707242 TCGACACTAGTGATTTCTTCAGT 57.293 39.130 29.30 2.21 41.08 3.41
2544 2612 5.461526 TCGACACTAGTGATTTCTTCAGTG 58.538 41.667 29.30 0.39 38.50 3.66
2545 2613 4.090642 CGACACTAGTGATTTCTTCAGTGC 59.909 45.833 29.30 1.79 38.50 4.40
2546 2614 3.990469 ACACTAGTGATTTCTTCAGTGCG 59.010 43.478 29.30 0.00 38.50 5.34
2547 2615 4.237724 CACTAGTGATTTCTTCAGTGCGA 58.762 43.478 18.45 0.00 38.50 5.10
2548 2616 4.090642 CACTAGTGATTTCTTCAGTGCGAC 59.909 45.833 18.45 0.00 38.50 5.19
2549 2617 3.393089 AGTGATTTCTTCAGTGCGACT 57.607 42.857 0.00 0.00 36.62 4.18
2550 2618 3.321497 AGTGATTTCTTCAGTGCGACTC 58.679 45.455 0.00 0.00 36.62 3.36
2551 2619 2.091277 GTGATTTCTTCAGTGCGACTCG 59.909 50.000 0.00 0.00 34.17 4.18
2552 2620 1.656095 GATTTCTTCAGTGCGACTCGG 59.344 52.381 0.00 0.00 0.00 4.63
2553 2621 0.387929 TTTCTTCAGTGCGACTCGGT 59.612 50.000 0.00 0.00 0.00 4.69
2554 2622 0.318699 TTCTTCAGTGCGACTCGGTG 60.319 55.000 0.00 0.00 0.00 4.94
2555 2623 1.007271 CTTCAGTGCGACTCGGTGT 60.007 57.895 0.00 0.00 0.00 4.16
2556 2624 0.240145 CTTCAGTGCGACTCGGTGTA 59.760 55.000 0.00 0.00 0.00 2.90
2557 2625 0.240145 TTCAGTGCGACTCGGTGTAG 59.760 55.000 0.00 0.00 0.00 2.74
2558 2626 1.801913 CAGTGCGACTCGGTGTAGC 60.802 63.158 8.11 8.11 45.57 3.58
2559 2627 1.972223 AGTGCGACTCGGTGTAGCT 60.972 57.895 14.59 0.00 45.57 3.32
2560 2628 0.675837 AGTGCGACTCGGTGTAGCTA 60.676 55.000 14.59 0.00 45.57 3.32
2561 2629 0.248134 GTGCGACTCGGTGTAGCTAG 60.248 60.000 14.59 0.00 45.57 3.42
2562 2630 1.298488 GCGACTCGGTGTAGCTAGC 60.298 63.158 6.62 6.62 42.73 3.42
2563 2631 1.716826 GCGACTCGGTGTAGCTAGCT 61.717 60.000 23.12 23.12 42.73 3.32
2564 2632 1.579698 CGACTCGGTGTAGCTAGCTA 58.420 55.000 20.67 20.67 0.00 3.32
2565 2633 1.527736 CGACTCGGTGTAGCTAGCTAG 59.472 57.143 24.78 16.84 0.00 3.42
2566 2634 1.874872 GACTCGGTGTAGCTAGCTAGG 59.125 57.143 24.78 13.89 0.00 3.02
2567 2635 1.212441 ACTCGGTGTAGCTAGCTAGGT 59.788 52.381 27.23 27.23 37.80 3.08
2568 2636 2.299521 CTCGGTGTAGCTAGCTAGGTT 58.700 52.381 28.98 7.65 35.39 3.50
2569 2637 2.688958 CTCGGTGTAGCTAGCTAGGTTT 59.311 50.000 28.98 0.34 35.39 3.27
2570 2638 2.426024 TCGGTGTAGCTAGCTAGGTTTG 59.574 50.000 28.98 13.41 35.39 2.93
2571 2639 2.552031 GGTGTAGCTAGCTAGGTTTGC 58.448 52.381 28.98 19.16 35.39 3.68
2572 2640 2.194271 GTGTAGCTAGCTAGGTTTGCG 58.806 52.381 28.98 0.00 35.39 4.85
2573 2641 1.136305 TGTAGCTAGCTAGGTTTGCGG 59.864 52.381 28.98 0.00 35.39 5.69
2574 2642 0.104304 TAGCTAGCTAGGTTTGCGGC 59.896 55.000 28.98 9.87 35.39 6.53
2575 2643 2.526120 GCTAGCTAGGTTTGCGGCG 61.526 63.158 22.10 0.51 35.28 6.46
2576 2644 2.510691 TAGCTAGGTTTGCGGCGC 60.511 61.111 27.44 27.44 35.28 6.53
2579 2647 4.778143 CTAGGTTTGCGGCGCCCT 62.778 66.667 30.82 28.52 0.00 5.19
2600 2668 2.497770 CCGGTCGTGGGATGGTAC 59.502 66.667 0.00 0.00 0.00 3.34
2601 2669 2.103538 CGGTCGTGGGATGGTACG 59.896 66.667 0.00 0.00 41.38 3.67
2602 2670 2.409055 CGGTCGTGGGATGGTACGA 61.409 63.158 0.00 0.00 45.87 3.43
2605 2673 2.120765 TCGTGGGATGGTACGATGG 58.879 57.895 0.00 0.00 43.54 3.51
2606 2674 0.396001 TCGTGGGATGGTACGATGGA 60.396 55.000 0.00 0.00 43.54 3.41
2607 2675 0.462375 CGTGGGATGGTACGATGGAA 59.538 55.000 0.00 0.00 42.54 3.53
2608 2676 1.805120 CGTGGGATGGTACGATGGAAC 60.805 57.143 0.00 0.00 42.54 3.62
2609 2677 0.462375 TGGGATGGTACGATGGAACG 59.538 55.000 0.00 0.00 39.31 3.95
2610 2678 0.249741 GGGATGGTACGATGGAACGG 60.250 60.000 0.00 0.00 37.61 4.44
2611 2679 0.462789 GGATGGTACGATGGAACGGT 59.537 55.000 0.00 0.00 37.61 4.83
2612 2680 1.537562 GGATGGTACGATGGAACGGTC 60.538 57.143 0.00 0.00 37.61 4.79
2613 2681 1.135527 GATGGTACGATGGAACGGTCA 59.864 52.381 1.31 0.00 37.61 4.02
2614 2682 1.187974 TGGTACGATGGAACGGTCAT 58.812 50.000 1.31 0.00 37.61 3.06
2615 2683 1.134936 TGGTACGATGGAACGGTCATG 60.135 52.381 1.31 0.00 37.61 3.07
2616 2684 1.567504 GTACGATGGAACGGTCATGG 58.432 55.000 1.31 0.00 37.61 3.66
2617 2685 0.179094 TACGATGGAACGGTCATGGC 60.179 55.000 1.31 0.00 37.61 4.40
2618 2686 2.525248 CGATGGAACGGTCATGGCG 61.525 63.158 1.31 0.00 0.00 5.69
2619 2687 2.823829 GATGGAACGGTCATGGCGC 61.824 63.158 1.31 0.00 0.00 6.53
2622 2690 2.824041 GAACGGTCATGGCGCCAT 60.824 61.111 36.10 36.10 37.08 4.40
2662 2730 4.100084 CTGGGATGGCGGCACTCA 62.100 66.667 16.34 13.71 0.00 3.41
2663 2731 4.408821 TGGGATGGCGGCACTCAC 62.409 66.667 16.34 14.83 0.00 3.51
2664 2732 4.101448 GGGATGGCGGCACTCACT 62.101 66.667 16.34 0.00 0.00 3.41
2665 2733 2.731571 GGGATGGCGGCACTCACTA 61.732 63.158 16.34 0.00 0.00 2.74
2666 2734 1.521681 GGATGGCGGCACTCACTAC 60.522 63.158 16.34 0.00 0.00 2.73
2667 2735 1.521681 GATGGCGGCACTCACTACC 60.522 63.158 16.34 0.00 0.00 3.18
2668 2736 1.961180 GATGGCGGCACTCACTACCT 61.961 60.000 16.34 0.00 0.00 3.08
2669 2737 2.125512 GGCGGCACTCACTACCTG 60.126 66.667 3.07 0.00 0.00 4.00
2670 2738 2.125512 GCGGCACTCACTACCTGG 60.126 66.667 0.00 0.00 0.00 4.45
2671 2739 2.943978 GCGGCACTCACTACCTGGT 61.944 63.158 4.05 4.05 0.00 4.00
2672 2740 1.215647 CGGCACTCACTACCTGGTC 59.784 63.158 0.63 0.00 0.00 4.02
2673 2741 1.215647 GGCACTCACTACCTGGTCG 59.784 63.158 0.63 0.00 0.00 4.79
2674 2742 1.533469 GGCACTCACTACCTGGTCGT 61.533 60.000 0.63 0.00 0.00 4.34
2675 2743 0.388649 GCACTCACTACCTGGTCGTG 60.389 60.000 21.80 21.80 31.76 4.35
2676 2744 0.388649 CACTCACTACCTGGTCGTGC 60.389 60.000 22.71 0.00 30.81 5.34
2677 2745 1.154016 CTCACTACCTGGTCGTGCG 60.154 63.158 22.71 15.21 30.81 5.34
2678 2746 2.809601 CACTACCTGGTCGTGCGC 60.810 66.667 17.19 0.00 0.00 6.09
2679 2747 4.415332 ACTACCTGGTCGTGCGCG 62.415 66.667 14.79 14.79 39.92 6.86
2686 2754 4.398598 GGTCGTGCGCGGCATTTT 62.399 61.111 26.95 0.00 45.79 1.82
2687 2755 2.869702 GTCGTGCGCGGCATTTTC 60.870 61.111 20.97 0.00 43.09 2.29
2688 2756 4.437959 TCGTGCGCGGCATTTTCG 62.438 61.111 21.04 6.59 41.91 3.46
2689 2757 4.734920 CGTGCGCGGCATTTTCGT 62.735 61.111 12.87 0.00 41.91 3.85
2690 2758 2.428403 GTGCGCGGCATTTTCGTT 60.428 55.556 8.83 0.00 41.91 3.85
2691 2759 2.014018 GTGCGCGGCATTTTCGTTT 61.014 52.632 8.83 0.00 41.91 3.60
2692 2760 1.299468 TGCGCGGCATTTTCGTTTT 60.299 47.368 8.83 0.00 31.71 2.43
2693 2761 1.272114 TGCGCGGCATTTTCGTTTTC 61.272 50.000 8.83 0.00 31.71 2.29
2694 2762 1.272114 GCGCGGCATTTTCGTTTTCA 61.272 50.000 8.83 0.00 0.00 2.69
2695 2763 0.702383 CGCGGCATTTTCGTTTTCAG 59.298 50.000 0.00 0.00 0.00 3.02
2696 2764 1.766069 GCGGCATTTTCGTTTTCAGT 58.234 45.000 0.00 0.00 0.00 3.41
2697 2765 2.124122 GCGGCATTTTCGTTTTCAGTT 58.876 42.857 0.00 0.00 0.00 3.16
2698 2766 3.301706 GCGGCATTTTCGTTTTCAGTTA 58.698 40.909 0.00 0.00 0.00 2.24
2699 2767 3.360758 GCGGCATTTTCGTTTTCAGTTAG 59.639 43.478 0.00 0.00 0.00 2.34
2700 2768 4.778904 CGGCATTTTCGTTTTCAGTTAGA 58.221 39.130 0.00 0.00 0.00 2.10
2701 2769 5.390613 CGGCATTTTCGTTTTCAGTTAGAT 58.609 37.500 0.00 0.00 0.00 1.98
2702 2770 5.508224 CGGCATTTTCGTTTTCAGTTAGATC 59.492 40.000 0.00 0.00 0.00 2.75
2703 2771 5.508224 GGCATTTTCGTTTTCAGTTAGATCG 59.492 40.000 0.00 0.00 0.00 3.69
2704 2772 6.077838 GCATTTTCGTTTTCAGTTAGATCGT 58.922 36.000 0.00 0.00 0.00 3.73
2705 2773 6.031417 GCATTTTCGTTTTCAGTTAGATCGTG 59.969 38.462 0.00 0.00 0.00 4.35
2706 2774 6.592798 TTTTCGTTTTCAGTTAGATCGTGT 57.407 33.333 0.00 0.00 0.00 4.49
2707 2775 7.697352 TTTTCGTTTTCAGTTAGATCGTGTA 57.303 32.000 0.00 0.00 0.00 2.90
2708 2776 7.697352 TTTCGTTTTCAGTTAGATCGTGTAA 57.303 32.000 0.00 0.00 0.00 2.41
2709 2777 6.680055 TCGTTTTCAGTTAGATCGTGTAAC 57.320 37.500 0.00 0.00 0.00 2.50
2728 2796 7.858583 GTGTAACGACTGAATAAAAACTTCCT 58.141 34.615 0.00 0.00 0.00 3.36
2743 2811 4.494091 ACTTCCTCTCTCTCTCTCTCAG 57.506 50.000 0.00 0.00 0.00 3.35
2746 2814 1.492176 CCTCTCTCTCTCTCTCAGGCT 59.508 57.143 0.00 0.00 0.00 4.58
2749 2817 2.779430 TCTCTCTCTCTCTCAGGCTCAT 59.221 50.000 0.00 0.00 0.00 2.90
2758 2828 2.765135 CTCTCAGGCTCATTCTCTTCCA 59.235 50.000 0.00 0.00 0.00 3.53
2760 2830 1.205655 TCAGGCTCATTCTCTTCCACG 59.794 52.381 0.00 0.00 0.00 4.94
2761 2831 0.539051 AGGCTCATTCTCTTCCACGG 59.461 55.000 0.00 0.00 0.00 4.94
2774 2844 4.129737 CACGGCTCCGGTGATCGT 62.130 66.667 13.31 15.94 44.69 3.73
2775 2845 4.129737 ACGGCTCCGGTGATCGTG 62.130 66.667 19.29 2.97 44.69 4.35
2780 2850 2.036731 TCCGGTGATCGTGGGAGT 59.963 61.111 0.00 0.00 37.11 3.85
2782 2852 1.447838 CCGGTGATCGTGGGAGTTG 60.448 63.158 0.00 0.00 37.11 3.16
2783 2853 1.589630 CGGTGATCGTGGGAGTTGA 59.410 57.895 0.00 0.00 0.00 3.18
2785 2855 0.736325 GGTGATCGTGGGAGTTGACG 60.736 60.000 0.00 0.00 36.91 4.35
2789 2859 1.605058 ATCGTGGGAGTTGACGAGGG 61.605 60.000 0.00 0.00 46.91 4.30
2835 2905 3.005554 CAGAGTTGGTTTGCTCGATCAT 58.994 45.455 0.00 0.00 36.88 2.45
2841 2911 2.028203 TGGTTTGCTCGATCATCTGTGA 60.028 45.455 0.00 0.00 39.04 3.58
2860 2930 2.295885 GAAGATGATTGGACCTGGCAG 58.704 52.381 7.75 7.75 0.00 4.85
2864 2934 3.267233 ATTGGACCTGGCAGCCCA 61.267 61.111 18.87 18.87 39.32 5.36
2874 2944 1.303970 GGCAGCCCAAAGAAGAGCT 60.304 57.895 0.00 0.00 35.52 4.09
2878 2948 0.037447 AGCCCAAAGAAGAGCTGGAC 59.963 55.000 0.00 0.00 33.41 4.02
2882 2952 1.674221 CCAAAGAAGAGCTGGACGGAG 60.674 57.143 0.00 0.00 31.38 4.63
2923 2996 2.202349 GATTGTTCACCAGCGCGC 60.202 61.111 26.66 26.66 0.00 6.86
2957 3030 2.438434 GGTGCGTGGCCTATGCTT 60.438 61.111 16.87 0.00 41.99 3.91
2972 3045 0.390603 TGCTTACGCGCACCAACTAT 60.391 50.000 5.73 0.00 39.65 2.12
2974 3047 1.355971 CTTACGCGCACCAACTATGT 58.644 50.000 5.73 0.00 0.00 2.29
2975 3048 1.060553 CTTACGCGCACCAACTATGTG 59.939 52.381 5.73 0.00 36.79 3.21
2977 3050 2.749865 CGCGCACCAACTATGTGGG 61.750 63.158 8.75 3.42 46.12 4.61
2978 3051 1.674322 GCGCACCAACTATGTGGGT 60.674 57.895 0.30 0.00 41.16 4.51
2996 3069 2.987596 TTGGGCCCTCCTGATGCAG 61.988 63.158 25.70 0.00 36.20 4.41
3075 3148 1.439353 GACGGATCGCATGGCAATGT 61.439 55.000 2.31 0.00 36.08 2.71
3092 3165 1.153568 GTAGTGCCTGCTGCGATCA 60.154 57.895 0.00 0.00 45.60 2.92
3104 3177 2.202610 CGATCAGTGCCGCGAGAA 60.203 61.111 8.23 0.00 0.00 2.87
3122 3195 2.731691 AAATGGTGTCCACGCTCGCT 62.732 55.000 0.00 0.00 35.80 4.93
3125 3198 3.406361 GTGTCCACGCTCGCTGTG 61.406 66.667 6.82 6.82 37.09 3.66
3164 3237 1.450312 CTGGGGCACGATCAAGACC 60.450 63.158 0.00 0.00 0.00 3.85
3212 3285 4.090057 GCCAAGGCGACGTTGCTC 62.090 66.667 26.31 16.49 34.52 4.26
3229 3302 3.437795 CCGTCGCCAGTACGAGGT 61.438 66.667 8.83 0.00 43.89 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.917933 TGAACATTGATCGGCCTTAGG 58.082 47.619 0.00 0.00 0.00 2.69
1 2 4.384056 AGATGAACATTGATCGGCCTTAG 58.616 43.478 0.00 0.00 0.00 2.18
2 3 4.422073 AGATGAACATTGATCGGCCTTA 57.578 40.909 0.00 0.00 0.00 2.69
10 11 9.857656 AAATGGTATGAGTAGATGAACATTGAT 57.142 29.630 0.00 0.00 0.00 2.57
15 16 7.194112 TGGAAATGGTATGAGTAGATGAACA 57.806 36.000 0.00 0.00 0.00 3.18
23 24 6.103997 GTCTTCGTTGGAAATGGTATGAGTA 58.896 40.000 0.00 0.00 32.44 2.59
28 29 5.046591 TCTCTGTCTTCGTTGGAAATGGTAT 60.047 40.000 0.00 0.00 32.44 2.73
32 33 3.124297 GCTCTCTGTCTTCGTTGGAAATG 59.876 47.826 0.00 0.00 0.00 2.32
42 43 1.446966 GGCCGTGCTCTCTGTCTTC 60.447 63.158 0.00 0.00 0.00 2.87
47 48 1.630244 CTTTTCGGCCGTGCTCTCTG 61.630 60.000 27.15 4.78 0.00 3.35
56 57 1.305219 TTGGATCTGCTTTTCGGCCG 61.305 55.000 22.12 22.12 0.00 6.13
58 59 1.131315 GACTTGGATCTGCTTTTCGGC 59.869 52.381 0.00 0.00 0.00 5.54
59 60 2.426522 TGACTTGGATCTGCTTTTCGG 58.573 47.619 0.00 0.00 0.00 4.30
65 66 2.683152 GCCTCAATGACTTGGATCTGCT 60.683 50.000 0.00 0.00 32.95 4.24
111 112 3.676049 GCCTTAGTAAATTGGGCAACTGC 60.676 47.826 6.11 0.00 42.08 4.40
151 152 3.165875 TCTTATGGAGATCTAAGCCGGG 58.834 50.000 2.18 0.00 0.00 5.73
153 154 5.694006 CAGTTTCTTATGGAGATCTAAGCCG 59.306 44.000 0.00 0.00 33.49 5.52
155 156 5.176590 CGCAGTTTCTTATGGAGATCTAAGC 59.823 44.000 0.00 0.00 33.49 3.09
156 157 5.694006 CCGCAGTTTCTTATGGAGATCTAAG 59.306 44.000 0.00 0.00 33.49 2.18
163 164 2.029838 AGCCGCAGTTTCTTATGGAG 57.970 50.000 0.00 0.00 0.00 3.86
175 176 0.438830 GTCGACAAGTTAAGCCGCAG 59.561 55.000 11.55 0.00 0.00 5.18
176 177 0.032952 AGTCGACAAGTTAAGCCGCA 59.967 50.000 19.50 0.00 0.00 5.69
178 179 3.872560 AAAAGTCGACAAGTTAAGCCG 57.127 42.857 19.50 0.00 0.00 5.52
215 216 0.761187 TATCTCCATGTCCAGGCTGC 59.239 55.000 9.56 0.00 0.00 5.25
223 224 3.209410 CCAGCAACCTTATCTCCATGTC 58.791 50.000 0.00 0.00 0.00 3.06
224 225 2.578021 ACCAGCAACCTTATCTCCATGT 59.422 45.455 0.00 0.00 0.00 3.21
234 235 3.577805 AAACAGACTACCAGCAACCTT 57.422 42.857 0.00 0.00 0.00 3.50
236 237 3.007614 TCCTAAACAGACTACCAGCAACC 59.992 47.826 0.00 0.00 0.00 3.77
246 247 5.765182 CCACATTGTCTTTCCTAAACAGACT 59.235 40.000 0.00 0.00 38.24 3.24
249 250 6.391227 AACCACATTGTCTTTCCTAAACAG 57.609 37.500 0.00 0.00 0.00 3.16
274 275 7.553504 TCCCTCTTCGATTTCCATATATCAA 57.446 36.000 0.00 0.00 0.00 2.57
315 323 6.206243 CCCTCATATTTCATCTTCATGTGTCC 59.794 42.308 0.00 0.00 0.00 4.02
321 329 7.551974 CGCTATTCCCTCATATTTCATCTTCAT 59.448 37.037 0.00 0.00 0.00 2.57
323 331 6.314896 CCGCTATTCCCTCATATTTCATCTTC 59.685 42.308 0.00 0.00 0.00 2.87
324 332 6.013379 TCCGCTATTCCCTCATATTTCATCTT 60.013 38.462 0.00 0.00 0.00 2.40
331 339 4.678256 TCTCTCCGCTATTCCCTCATATT 58.322 43.478 0.00 0.00 0.00 1.28
332 340 4.323569 TCTCTCCGCTATTCCCTCATAT 57.676 45.455 0.00 0.00 0.00 1.78
347 355 2.994578 GGCTTGTTAACTCGTTCTCTCC 59.005 50.000 7.22 0.00 0.00 3.71
368 376 1.583967 CTAGTGACGCTCGCCTTCG 60.584 63.158 0.00 0.00 0.00 3.79
381 389 3.971245 AGAGGGAGTTGCTTTCTAGTG 57.029 47.619 0.00 0.00 0.00 2.74
382 390 3.262151 GGAAGAGGGAGTTGCTTTCTAGT 59.738 47.826 0.00 0.00 0.00 2.57
387 395 1.202940 GGTGGAAGAGGGAGTTGCTTT 60.203 52.381 0.00 0.00 0.00 3.51
394 402 4.148825 CCGCGGTGGAAGAGGGAG 62.149 72.222 19.50 0.00 42.00 4.30
398 406 3.423154 GTTGCCGCGGTGGAAGAG 61.423 66.667 28.70 0.00 42.00 2.85
410 418 1.578206 GAGTTGGCTTCGAGGTTGCC 61.578 60.000 11.99 11.99 46.26 4.52
424 432 3.236816 GCAACGAACCATTGATGAGTTG 58.763 45.455 0.00 12.56 40.03 3.16
426 434 2.485426 CTGCAACGAACCATTGATGAGT 59.515 45.455 0.00 0.00 0.00 3.41
429 437 3.770263 ATCTGCAACGAACCATTGATG 57.230 42.857 0.00 0.00 0.00 3.07
430 438 4.201950 GCTAATCTGCAACGAACCATTGAT 60.202 41.667 0.00 0.00 0.00 2.57
435 443 2.028112 AGAGCTAATCTGCAACGAACCA 60.028 45.455 0.00 0.00 36.69 3.67
485 493 0.670162 CCCCTGCAAATATCTTGGCG 59.330 55.000 0.00 0.00 33.66 5.69
499 507 0.679002 CTGGTGATGCAGTTCCCCTG 60.679 60.000 0.00 0.00 44.53 4.45
500 508 0.842030 TCTGGTGATGCAGTTCCCCT 60.842 55.000 0.00 0.00 0.00 4.79
501 509 0.038166 TTCTGGTGATGCAGTTCCCC 59.962 55.000 0.00 0.00 0.00 4.81
517 525 9.875691 GGCTTTACTATGAAAATTTCCAATTCT 57.124 29.630 3.00 0.00 0.00 2.40
524 532 6.753744 CCTGCAGGCTTTACTATGAAAATTTC 59.246 38.462 22.33 0.00 0.00 2.17
539 547 0.323178 CCAGATTGACCTGCAGGCTT 60.323 55.000 33.06 14.93 39.32 4.35
544 552 3.295093 TCAAAAACCAGATTGACCTGCA 58.705 40.909 0.00 0.00 30.94 4.41
566 574 5.392703 CCCTTAGCTTTTGAAACCGGATAAC 60.393 44.000 9.46 0.00 0.00 1.89
578 586 7.272037 TGAAAACTTAGTCCCTTAGCTTTTG 57.728 36.000 0.00 0.00 0.00 2.44
583 591 6.819397 AACATGAAAACTTAGTCCCTTAGC 57.181 37.500 0.00 0.00 0.00 3.09
611 619 8.422577 AAAGTATAAAAATGGTCCTTCAGCTT 57.577 30.769 0.00 0.00 0.00 3.74
614 622 8.263940 TCGAAAGTATAAAAATGGTCCTTCAG 57.736 34.615 0.00 0.00 0.00 3.02
649 657 9.844257 ACATAGTAGTACTAAACTTATCGTCCT 57.156 33.333 13.92 0.00 39.80 3.85
665 673 7.559486 TCGAAGAGTAGGTCAACATAGTAGTA 58.441 38.462 0.00 0.00 0.00 1.82
666 674 6.413052 TCGAAGAGTAGGTCAACATAGTAGT 58.587 40.000 0.00 0.00 0.00 2.73
667 675 6.922247 TCGAAGAGTAGGTCAACATAGTAG 57.078 41.667 0.00 0.00 0.00 2.57
709 723 1.202143 GGCCGACATCCAAAAATCGAC 60.202 52.381 0.00 0.00 36.70 4.20
749 765 0.668535 GCGGAGGTTTGTTGCTTCTT 59.331 50.000 0.00 0.00 0.00 2.52
792 808 1.423845 GGCGATGTGGTTTGTAGCG 59.576 57.895 0.00 0.00 0.00 4.26
864 880 1.677217 GGAGTGGAGTGAATGGAGTGC 60.677 57.143 0.00 0.00 0.00 4.40
870 886 3.407424 TTGAGTGGAGTGGAGTGAATG 57.593 47.619 0.00 0.00 0.00 2.67
871 887 4.437682 TTTTGAGTGGAGTGGAGTGAAT 57.562 40.909 0.00 0.00 0.00 2.57
933 949 3.062466 CGAGGAGTGAGGCGACCA 61.062 66.667 0.00 0.00 0.00 4.02
960 976 4.072088 CGTTGCTCGCCGGACAAC 62.072 66.667 5.05 12.61 40.17 3.32
994 1010 2.124983 CAGGAGTGCCATGACCCG 60.125 66.667 0.00 0.00 36.29 5.28
1084 1100 2.584143 CGGCCGGCGGTAACTAAG 60.584 66.667 28.82 7.35 0.00 2.18
1316 1332 8.401784 ACGATAGGCATAAGAGGTAATCTTGGA 61.402 40.741 0.00 0.00 44.93 3.53
1317 1333 6.295349 ACGATAGGCATAAGAGGTAATCTTGG 60.295 42.308 0.00 0.00 44.93 3.61
1318 1334 6.692486 ACGATAGGCATAAGAGGTAATCTTG 58.308 40.000 0.00 0.00 44.93 3.02
1319 1335 6.919775 ACGATAGGCATAAGAGGTAATCTT 57.080 37.500 0.00 0.00 46.34 2.40
1320 1336 6.919775 AACGATAGGCATAAGAGGTAATCT 57.080 37.500 0.00 0.00 40.00 2.40
1321 1337 6.128526 GCAAACGATAGGCATAAGAGGTAATC 60.129 42.308 0.00 0.00 43.77 1.75
1322 1338 5.701290 GCAAACGATAGGCATAAGAGGTAAT 59.299 40.000 0.00 0.00 43.77 1.89
1323 1339 5.054477 GCAAACGATAGGCATAAGAGGTAA 58.946 41.667 0.00 0.00 43.77 2.85
1324 1340 4.628074 GCAAACGATAGGCATAAGAGGTA 58.372 43.478 0.00 0.00 43.77 3.08
1325 1341 3.467803 GCAAACGATAGGCATAAGAGGT 58.532 45.455 0.00 0.00 43.77 3.85
1326 1342 2.476619 CGCAAACGATAGGCATAAGAGG 59.523 50.000 0.00 0.00 43.93 3.69
1327 1343 3.060272 CACGCAAACGATAGGCATAAGAG 60.060 47.826 0.00 0.00 43.93 2.85
1358 1375 2.362120 AACAGCATCAGCCCAGGC 60.362 61.111 0.00 0.00 43.56 4.85
1477 1494 2.865598 CGAGCTGCGGAGATGGGAT 61.866 63.158 8.65 0.00 36.03 3.85
1480 1497 2.279120 GACGAGCTGCGGAGATGG 60.279 66.667 8.65 5.09 46.49 3.51
1495 1512 4.744570 TGTCTGGTTATCTGAATCGTGAC 58.255 43.478 0.00 0.00 0.00 3.67
1535 1552 4.447724 GTCTGAACGATGTTGCTCACTAAA 59.552 41.667 0.00 0.00 0.00 1.85
1558 1584 8.706936 CAGATACAAGATGTTTGATTAGATCCG 58.293 37.037 0.00 0.00 0.00 4.18
1568 1594 6.558771 TCACCAACAGATACAAGATGTTTG 57.441 37.500 0.00 0.00 35.04 2.93
1571 1597 6.053632 TGATCACCAACAGATACAAGATGT 57.946 37.500 0.00 0.00 0.00 3.06
1763 1789 1.950828 AGATACACATCTGCAGCAGC 58.049 50.000 18.43 0.71 40.15 5.25
1767 1819 2.612672 CCAGCAAGATACACATCTGCAG 59.387 50.000 7.63 7.63 40.81 4.41
1942 1995 9.677567 TCTAAATTTGTAGCAAAGCTTGTTTAG 57.322 29.630 0.00 13.15 40.44 1.85
1944 1997 9.546428 AATCTAAATTTGTAGCAAAGCTTGTTT 57.454 25.926 0.00 0.00 40.44 2.83
2021 2085 2.600420 CGACGTGATCTTCATCCACTTG 59.400 50.000 0.00 0.00 0.00 3.16
2060 2124 1.303317 GATGACGTGCCCCACCTTT 60.303 57.895 0.00 0.00 0.00 3.11
2159 2223 1.066908 GAGGAGAGGAAGATGCAGACG 59.933 57.143 0.00 0.00 0.00 4.18
2234 2298 0.253044 TCAGCTACAAGTGGGGCATC 59.747 55.000 0.00 0.00 0.00 3.91
2279 2343 2.758423 TGTACATGTACATCACGAGGCT 59.242 45.455 30.31 0.00 40.77 4.58
2317 2381 1.153449 TCGGGGTCGATGCATTGAC 60.153 57.895 31.33 31.33 40.88 3.18
2336 2404 4.213270 CGATTGTTTCCTGTTCTTAGCACA 59.787 41.667 0.00 0.00 0.00 4.57
2347 2415 1.011968 TCGACCGCGATTGTTTCCTG 61.012 55.000 8.23 0.00 42.51 3.86
2358 2426 1.140407 GAGAGAACCAATCGACCGCG 61.140 60.000 0.00 0.00 39.35 6.46
2359 2427 0.173708 AGAGAGAACCAATCGACCGC 59.826 55.000 0.00 0.00 0.00 5.68
2360 2428 2.164624 AGAAGAGAGAACCAATCGACCG 59.835 50.000 0.00 0.00 0.00 4.79
2361 2429 3.732471 CGAGAAGAGAGAACCAATCGACC 60.732 52.174 0.00 0.00 0.00 4.79
2362 2430 3.430931 CGAGAAGAGAGAACCAATCGAC 58.569 50.000 0.00 0.00 0.00 4.20
2363 2431 2.159366 GCGAGAAGAGAGAACCAATCGA 60.159 50.000 0.00 0.00 0.00 3.59
2366 2434 3.330267 GTTGCGAGAAGAGAGAACCAAT 58.670 45.455 0.00 0.00 0.00 3.16
2371 2439 1.399855 CGTCGTTGCGAGAAGAGAGAA 60.400 52.381 0.00 0.00 36.23 2.87
2372 2440 0.166161 CGTCGTTGCGAGAAGAGAGA 59.834 55.000 0.00 0.00 36.23 3.10
2373 2441 0.166161 TCGTCGTTGCGAGAAGAGAG 59.834 55.000 0.00 0.00 36.23 3.20
2382 2450 4.104633 GTCGTGCTCGTCGTTGCG 62.105 66.667 8.17 2.84 38.33 4.85
2383 2451 4.104633 CGTCGTGCTCGTCGTTGC 62.105 66.667 17.25 6.15 41.73 4.17
2384 2452 2.007114 TTCGTCGTGCTCGTCGTTG 61.007 57.895 22.62 5.05 45.27 4.10
2385 2453 2.007641 GTTCGTCGTGCTCGTCGTT 61.008 57.895 22.62 0.00 45.27 3.85
2386 2454 2.426425 GTTCGTCGTGCTCGTCGT 60.426 61.111 22.62 0.00 45.27 4.34
2387 2455 1.721257 GATGTTCGTCGTGCTCGTCG 61.721 60.000 18.93 18.93 46.06 5.12
2388 2456 0.454620 AGATGTTCGTCGTGCTCGTC 60.455 55.000 8.17 1.48 38.33 4.20
2389 2457 0.729478 CAGATGTTCGTCGTGCTCGT 60.729 55.000 8.17 0.00 38.33 4.18
2399 2467 5.220381 ACACTGTTACAGTACAGATGTTCG 58.780 41.667 18.19 4.30 46.72 3.95
2406 2474 5.475909 TCCTTCCTACACTGTTACAGTACAG 59.524 44.000 18.19 16.14 43.43 2.74
2455 2523 6.211515 ACTGAAGATCACAGCAACATTTTTC 58.788 36.000 16.27 0.00 38.74 2.29
2461 2529 3.807553 TGAACTGAAGATCACAGCAACA 58.192 40.909 16.27 12.02 38.74 3.33
2462 2530 4.060900 TCTGAACTGAAGATCACAGCAAC 58.939 43.478 16.27 10.26 38.74 4.17
2463 2531 4.039609 TCTCTGAACTGAAGATCACAGCAA 59.960 41.667 16.27 5.31 38.74 3.91
2464 2532 3.575687 TCTCTGAACTGAAGATCACAGCA 59.424 43.478 16.27 8.90 38.74 4.41
2465 2533 4.185467 TCTCTGAACTGAAGATCACAGC 57.815 45.455 16.27 5.62 38.74 4.40
2466 2534 6.396450 TGAATCTCTGAACTGAAGATCACAG 58.604 40.000 15.21 15.21 40.68 3.66
2467 2535 6.014755 ACTGAATCTCTGAACTGAAGATCACA 60.015 38.462 0.00 0.00 0.00 3.58
2468 2536 6.397272 ACTGAATCTCTGAACTGAAGATCAC 58.603 40.000 0.00 0.00 0.00 3.06
2469 2537 6.602410 ACTGAATCTCTGAACTGAAGATCA 57.398 37.500 0.00 0.00 0.00 2.92
2470 2538 7.202526 CCTACTGAATCTCTGAACTGAAGATC 58.797 42.308 0.00 0.00 0.00 2.75
2471 2539 6.098124 CCCTACTGAATCTCTGAACTGAAGAT 59.902 42.308 0.00 0.00 0.00 2.40
2472 2540 5.420421 CCCTACTGAATCTCTGAACTGAAGA 59.580 44.000 0.00 0.00 0.00 2.87
2473 2541 5.186797 ACCCTACTGAATCTCTGAACTGAAG 59.813 44.000 0.00 0.00 0.00 3.02
2474 2542 5.087323 ACCCTACTGAATCTCTGAACTGAA 58.913 41.667 0.00 0.00 0.00 3.02
2475 2543 4.678256 ACCCTACTGAATCTCTGAACTGA 58.322 43.478 0.00 0.00 0.00 3.41
2476 2544 5.413309 AACCCTACTGAATCTCTGAACTG 57.587 43.478 0.00 0.00 0.00 3.16
2477 2545 6.441088 AAAACCCTACTGAATCTCTGAACT 57.559 37.500 0.00 0.00 0.00 3.01
2478 2546 6.819146 CCTAAAACCCTACTGAATCTCTGAAC 59.181 42.308 0.00 0.00 0.00 3.18
2479 2547 6.500751 ACCTAAAACCCTACTGAATCTCTGAA 59.499 38.462 0.00 0.00 0.00 3.02
2480 2548 6.023603 ACCTAAAACCCTACTGAATCTCTGA 58.976 40.000 0.00 0.00 0.00 3.27
2481 2549 6.109359 CACCTAAAACCCTACTGAATCTCTG 58.891 44.000 0.00 0.00 0.00 3.35
2482 2550 5.785940 ACACCTAAAACCCTACTGAATCTCT 59.214 40.000 0.00 0.00 0.00 3.10
2483 2551 6.051179 ACACCTAAAACCCTACTGAATCTC 57.949 41.667 0.00 0.00 0.00 2.75
2484 2552 5.337330 CGACACCTAAAACCCTACTGAATCT 60.337 44.000 0.00 0.00 0.00 2.40
2485 2553 4.868734 CGACACCTAAAACCCTACTGAATC 59.131 45.833 0.00 0.00 0.00 2.52
2486 2554 4.529377 TCGACACCTAAAACCCTACTGAAT 59.471 41.667 0.00 0.00 0.00 2.57
2487 2555 3.896888 TCGACACCTAAAACCCTACTGAA 59.103 43.478 0.00 0.00 0.00 3.02
2488 2556 3.499338 TCGACACCTAAAACCCTACTGA 58.501 45.455 0.00 0.00 0.00 3.41
2489 2557 3.947910 TCGACACCTAAAACCCTACTG 57.052 47.619 0.00 0.00 0.00 2.74
2490 2558 4.961438 TTTCGACACCTAAAACCCTACT 57.039 40.909 0.00 0.00 0.00 2.57
2491 2559 5.059161 ACTTTTCGACACCTAAAACCCTAC 58.941 41.667 0.00 0.00 0.00 3.18
2492 2560 5.294734 ACTTTTCGACACCTAAAACCCTA 57.705 39.130 0.00 0.00 0.00 3.53
2493 2561 4.160642 ACTTTTCGACACCTAAAACCCT 57.839 40.909 0.00 0.00 0.00 4.34
2494 2562 4.336153 TGAACTTTTCGACACCTAAAACCC 59.664 41.667 0.00 0.00 0.00 4.11
2495 2563 5.065602 ACTGAACTTTTCGACACCTAAAACC 59.934 40.000 0.00 0.00 0.00 3.27
2496 2564 6.115450 ACTGAACTTTTCGACACCTAAAAC 57.885 37.500 0.00 0.00 0.00 2.43
2497 2565 6.746745 AACTGAACTTTTCGACACCTAAAA 57.253 33.333 0.00 0.00 0.00 1.52
2498 2566 6.746745 AAACTGAACTTTTCGACACCTAAA 57.253 33.333 0.00 0.00 0.00 1.85
2499 2567 6.354039 GAAACTGAACTTTTCGACACCTAA 57.646 37.500 0.00 0.00 0.00 2.69
2500 2568 5.978934 GAAACTGAACTTTTCGACACCTA 57.021 39.130 0.00 0.00 0.00 3.08
2501 2569 4.877323 GAAACTGAACTTTTCGACACCT 57.123 40.909 0.00 0.00 0.00 4.00
2508 2576 6.255020 TCACTAGTGTCGAAACTGAACTTTTC 59.745 38.462 21.99 0.00 0.00 2.29
2509 2577 6.103997 TCACTAGTGTCGAAACTGAACTTTT 58.896 36.000 21.99 0.00 0.00 2.27
2510 2578 5.657474 TCACTAGTGTCGAAACTGAACTTT 58.343 37.500 21.99 0.00 0.00 2.66
2511 2579 5.258456 TCACTAGTGTCGAAACTGAACTT 57.742 39.130 21.99 0.00 0.00 2.66
2512 2580 4.913335 TCACTAGTGTCGAAACTGAACT 57.087 40.909 21.99 3.29 0.00 3.01
2513 2581 6.421202 AGAAATCACTAGTGTCGAAACTGAAC 59.579 38.462 21.99 4.95 0.00 3.18
2514 2582 6.513180 AGAAATCACTAGTGTCGAAACTGAA 58.487 36.000 21.99 0.00 0.00 3.02
2515 2583 6.085555 AGAAATCACTAGTGTCGAAACTGA 57.914 37.500 21.99 8.52 0.00 3.41
2516 2584 6.420903 TGAAGAAATCACTAGTGTCGAAACTG 59.579 38.462 21.99 10.57 31.50 3.16
2517 2585 6.513180 TGAAGAAATCACTAGTGTCGAAACT 58.487 36.000 21.99 13.91 31.50 2.66
2518 2586 6.421202 ACTGAAGAAATCACTAGTGTCGAAAC 59.579 38.462 21.99 0.00 33.47 2.78
2519 2587 6.420903 CACTGAAGAAATCACTAGTGTCGAAA 59.579 38.462 21.99 3.12 33.47 3.46
2520 2588 5.920840 CACTGAAGAAATCACTAGTGTCGAA 59.079 40.000 21.99 3.51 33.47 3.71
2521 2589 5.461526 CACTGAAGAAATCACTAGTGTCGA 58.538 41.667 21.99 3.90 33.47 4.20
2522 2590 4.090642 GCACTGAAGAAATCACTAGTGTCG 59.909 45.833 21.99 9.95 35.35 4.35
2523 2591 4.090642 CGCACTGAAGAAATCACTAGTGTC 59.909 45.833 21.99 12.68 35.35 3.67
2524 2592 3.990469 CGCACTGAAGAAATCACTAGTGT 59.010 43.478 21.99 7.40 35.35 3.55
2525 2593 4.090642 GTCGCACTGAAGAAATCACTAGTG 59.909 45.833 17.17 17.17 35.76 2.74
2526 2594 4.021894 AGTCGCACTGAAGAAATCACTAGT 60.022 41.667 0.00 0.00 33.47 2.57
2527 2595 4.489810 AGTCGCACTGAAGAAATCACTAG 58.510 43.478 0.00 0.00 33.47 2.57
2528 2596 4.486090 GAGTCGCACTGAAGAAATCACTA 58.514 43.478 0.00 0.00 33.47 2.74
2529 2597 3.321497 GAGTCGCACTGAAGAAATCACT 58.679 45.455 0.00 0.00 33.47 3.41
2530 2598 2.091277 CGAGTCGCACTGAAGAAATCAC 59.909 50.000 0.00 0.00 33.47 3.06
2531 2599 2.328473 CGAGTCGCACTGAAGAAATCA 58.672 47.619 0.00 0.00 36.38 2.57
2532 2600 1.656095 CCGAGTCGCACTGAAGAAATC 59.344 52.381 7.12 0.00 0.00 2.17
2533 2601 1.000955 ACCGAGTCGCACTGAAGAAAT 59.999 47.619 7.12 0.00 0.00 2.17
2534 2602 0.387929 ACCGAGTCGCACTGAAGAAA 59.612 50.000 7.12 0.00 0.00 2.52
2535 2603 0.318699 CACCGAGTCGCACTGAAGAA 60.319 55.000 7.12 0.00 0.00 2.52
2536 2604 1.285950 CACCGAGTCGCACTGAAGA 59.714 57.895 7.12 0.00 0.00 2.87
2537 2605 0.240145 TACACCGAGTCGCACTGAAG 59.760 55.000 7.12 0.00 0.00 3.02
2538 2606 0.240145 CTACACCGAGTCGCACTGAA 59.760 55.000 7.12 0.00 0.00 3.02
2539 2607 1.873863 CTACACCGAGTCGCACTGA 59.126 57.895 7.12 0.00 0.00 3.41
2540 2608 1.801913 GCTACACCGAGTCGCACTG 60.802 63.158 7.12 4.33 38.68 3.66
2541 2609 0.675837 TAGCTACACCGAGTCGCACT 60.676 55.000 7.12 0.06 41.10 4.40
2542 2610 0.248134 CTAGCTACACCGAGTCGCAC 60.248 60.000 7.12 0.00 41.10 5.34
2543 2611 1.989966 GCTAGCTACACCGAGTCGCA 61.990 60.000 7.70 0.00 41.10 5.10
2544 2612 1.298488 GCTAGCTACACCGAGTCGC 60.298 63.158 7.70 0.00 39.09 5.19
2545 2613 1.527736 CTAGCTAGCTACACCGAGTCG 59.472 57.143 20.67 5.29 0.00 4.18
2546 2614 1.874872 CCTAGCTAGCTACACCGAGTC 59.125 57.143 20.67 0.00 0.00 3.36
2547 2615 1.212441 ACCTAGCTAGCTACACCGAGT 59.788 52.381 20.67 8.34 0.00 4.18
2548 2616 1.970092 ACCTAGCTAGCTACACCGAG 58.030 55.000 20.67 11.41 0.00 4.63
2549 2617 2.426024 CAAACCTAGCTAGCTACACCGA 59.574 50.000 20.67 1.02 0.00 4.69
2550 2618 2.810650 CAAACCTAGCTAGCTACACCG 58.189 52.381 20.67 10.73 0.00 4.94
2551 2619 2.552031 GCAAACCTAGCTAGCTACACC 58.448 52.381 20.67 2.86 0.00 4.16
2552 2620 2.194271 CGCAAACCTAGCTAGCTACAC 58.806 52.381 20.67 5.75 0.00 2.90
2553 2621 1.136305 CCGCAAACCTAGCTAGCTACA 59.864 52.381 20.67 3.45 0.00 2.74
2554 2622 1.854227 CCGCAAACCTAGCTAGCTAC 58.146 55.000 20.67 8.86 0.00 3.58
2555 2623 0.104304 GCCGCAAACCTAGCTAGCTA 59.896 55.000 22.85 22.85 0.00 3.32
2556 2624 1.153349 GCCGCAAACCTAGCTAGCT 60.153 57.895 23.12 23.12 0.00 3.32
2557 2625 2.526120 CGCCGCAAACCTAGCTAGC 61.526 63.158 15.74 6.62 0.00 3.42
2558 2626 2.526120 GCGCCGCAAACCTAGCTAG 61.526 63.158 14.20 14.20 0.00 3.42
2559 2627 2.510691 GCGCCGCAAACCTAGCTA 60.511 61.111 3.15 0.00 0.00 3.32
2562 2630 4.778143 AGGGCGCCGCAAACCTAG 62.778 66.667 22.54 0.00 0.00 3.02
2583 2651 2.497770 GTACCATCCCACGACCGG 59.502 66.667 0.00 0.00 0.00 5.28
2584 2652 2.103538 CGTACCATCCCACGACCG 59.896 66.667 0.00 0.00 40.56 4.79
2585 2653 3.607163 TCGTACCATCCCACGACC 58.393 61.111 0.00 0.00 41.89 4.79
2588 2656 0.462375 TTCCATCGTACCATCCCACG 59.538 55.000 0.00 0.00 39.48 4.94
2589 2657 1.805120 CGTTCCATCGTACCATCCCAC 60.805 57.143 0.00 0.00 0.00 4.61
2590 2658 0.462375 CGTTCCATCGTACCATCCCA 59.538 55.000 0.00 0.00 0.00 4.37
2591 2659 0.249741 CCGTTCCATCGTACCATCCC 60.250 60.000 0.00 0.00 0.00 3.85
2592 2660 0.462789 ACCGTTCCATCGTACCATCC 59.537 55.000 0.00 0.00 0.00 3.51
2593 2661 1.135527 TGACCGTTCCATCGTACCATC 59.864 52.381 0.00 0.00 0.00 3.51
2594 2662 1.187974 TGACCGTTCCATCGTACCAT 58.812 50.000 0.00 0.00 0.00 3.55
2595 2663 1.134936 CATGACCGTTCCATCGTACCA 60.135 52.381 0.00 0.00 0.00 3.25
2596 2664 1.567504 CATGACCGTTCCATCGTACC 58.432 55.000 0.00 0.00 0.00 3.34
2597 2665 1.567504 CCATGACCGTTCCATCGTAC 58.432 55.000 0.00 0.00 0.00 3.67
2598 2666 0.179094 GCCATGACCGTTCCATCGTA 60.179 55.000 0.00 0.00 0.00 3.43
2599 2667 1.449601 GCCATGACCGTTCCATCGT 60.450 57.895 0.00 0.00 0.00 3.73
2600 2668 2.525248 CGCCATGACCGTTCCATCG 61.525 63.158 0.00 0.00 0.00 3.84
2601 2669 2.823829 GCGCCATGACCGTTCCATC 61.824 63.158 0.00 0.00 0.00 3.51
2602 2670 2.824041 GCGCCATGACCGTTCCAT 60.824 61.111 0.00 0.00 0.00 3.41
2605 2673 2.824041 ATGGCGCCATGACCGTTC 60.824 61.111 40.10 3.20 35.03 3.95
2645 2713 4.100084 TGAGTGCCGCCATCCCAG 62.100 66.667 0.00 0.00 0.00 4.45
2646 2714 4.408821 GTGAGTGCCGCCATCCCA 62.409 66.667 0.00 0.00 0.00 4.37
2647 2715 2.731571 TAGTGAGTGCCGCCATCCC 61.732 63.158 0.00 0.00 0.00 3.85
2648 2716 1.521681 GTAGTGAGTGCCGCCATCC 60.522 63.158 0.00 0.00 0.00 3.51
2649 2717 1.521681 GGTAGTGAGTGCCGCCATC 60.522 63.158 0.00 0.00 0.00 3.51
2650 2718 1.990060 AGGTAGTGAGTGCCGCCAT 60.990 57.895 0.00 0.00 35.65 4.40
2651 2719 2.603473 AGGTAGTGAGTGCCGCCA 60.603 61.111 0.00 0.00 35.65 5.69
2652 2720 2.125512 CAGGTAGTGAGTGCCGCC 60.126 66.667 0.00 0.00 35.65 6.13
2653 2721 2.125512 CCAGGTAGTGAGTGCCGC 60.126 66.667 0.00 0.00 35.65 6.53
2654 2722 1.215647 GACCAGGTAGTGAGTGCCG 59.784 63.158 0.00 0.00 35.65 5.69
2655 2723 1.215647 CGACCAGGTAGTGAGTGCC 59.784 63.158 0.00 0.00 0.00 5.01
2656 2724 0.388649 CACGACCAGGTAGTGAGTGC 60.389 60.000 24.76 0.00 40.62 4.40
2657 2725 0.388649 GCACGACCAGGTAGTGAGTG 60.389 60.000 31.10 18.25 40.62 3.51
2658 2726 1.863662 CGCACGACCAGGTAGTGAGT 61.864 60.000 31.10 7.53 40.62 3.41
2659 2727 1.154016 CGCACGACCAGGTAGTGAG 60.154 63.158 31.10 25.32 40.62 3.51
2660 2728 2.959372 CGCACGACCAGGTAGTGA 59.041 61.111 31.10 0.00 40.62 3.41
2661 2729 2.809601 GCGCACGACCAGGTAGTG 60.810 66.667 24.69 24.69 40.99 2.74
2662 2730 4.415332 CGCGCACGACCAGGTAGT 62.415 66.667 8.75 0.00 43.93 2.73
2669 2737 4.398598 AAAATGCCGCGCACGACC 62.399 61.111 8.75 0.00 43.04 4.79
2670 2738 2.869702 GAAAATGCCGCGCACGAC 60.870 61.111 8.75 0.00 43.04 4.34
2671 2739 4.437959 CGAAAATGCCGCGCACGA 62.438 61.111 8.75 0.00 43.04 4.35
2672 2740 4.734920 ACGAAAATGCCGCGCACG 62.735 61.111 8.75 5.21 43.04 5.34
2673 2741 1.544777 AAAACGAAAATGCCGCGCAC 61.545 50.000 8.75 0.00 43.04 5.34
2674 2742 1.272114 GAAAACGAAAATGCCGCGCA 61.272 50.000 8.75 2.46 44.86 6.09
2675 2743 1.272114 TGAAAACGAAAATGCCGCGC 61.272 50.000 0.00 0.00 0.00 6.86
2676 2744 0.702383 CTGAAAACGAAAATGCCGCG 59.298 50.000 0.00 0.00 0.00 6.46
2677 2745 1.766069 ACTGAAAACGAAAATGCCGC 58.234 45.000 0.00 0.00 0.00 6.53
2678 2746 4.778904 TCTAACTGAAAACGAAAATGCCG 58.221 39.130 0.00 0.00 0.00 5.69
2679 2747 5.508224 CGATCTAACTGAAAACGAAAATGCC 59.492 40.000 0.00 0.00 0.00 4.40
2680 2748 6.031417 CACGATCTAACTGAAAACGAAAATGC 59.969 38.462 0.00 0.00 0.00 3.56
2681 2749 7.069569 ACACGATCTAACTGAAAACGAAAATG 58.930 34.615 0.00 0.00 0.00 2.32
2682 2750 7.186021 ACACGATCTAACTGAAAACGAAAAT 57.814 32.000 0.00 0.00 0.00 1.82
2683 2751 6.592798 ACACGATCTAACTGAAAACGAAAA 57.407 33.333 0.00 0.00 0.00 2.29
2684 2752 7.558137 GTTACACGATCTAACTGAAAACGAAA 58.442 34.615 0.00 0.00 0.00 3.46
2685 2753 6.129378 CGTTACACGATCTAACTGAAAACGAA 60.129 38.462 0.00 0.00 46.05 3.85
2686 2754 5.340403 CGTTACACGATCTAACTGAAAACGA 59.660 40.000 0.00 0.00 46.05 3.85
2687 2755 5.340403 TCGTTACACGATCTAACTGAAAACG 59.660 40.000 0.00 0.00 46.73 3.60
2688 2756 6.680055 TCGTTACACGATCTAACTGAAAAC 57.320 37.500 0.00 0.00 46.73 2.43
2702 2770 6.788930 GGAAGTTTTTATTCAGTCGTTACACG 59.211 38.462 0.00 0.00 44.19 4.49
2703 2771 7.858583 AGGAAGTTTTTATTCAGTCGTTACAC 58.141 34.615 0.00 0.00 0.00 2.90
2704 2772 7.929785 AGAGGAAGTTTTTATTCAGTCGTTACA 59.070 33.333 0.00 0.00 0.00 2.41
2705 2773 8.307921 AGAGGAAGTTTTTATTCAGTCGTTAC 57.692 34.615 0.00 0.00 0.00 2.50
2706 2774 8.365647 AGAGAGGAAGTTTTTATTCAGTCGTTA 58.634 33.333 0.00 0.00 0.00 3.18
2707 2775 7.217906 AGAGAGGAAGTTTTTATTCAGTCGTT 58.782 34.615 0.00 0.00 0.00 3.85
2708 2776 6.760291 AGAGAGGAAGTTTTTATTCAGTCGT 58.240 36.000 0.00 0.00 0.00 4.34
2709 2777 7.093992 AGAGAGAGGAAGTTTTTATTCAGTCG 58.906 38.462 0.00 0.00 0.00 4.18
2710 2778 8.311109 AGAGAGAGAGGAAGTTTTTATTCAGTC 58.689 37.037 0.00 0.00 0.00 3.51
2711 2779 8.201242 AGAGAGAGAGGAAGTTTTTATTCAGT 57.799 34.615 0.00 0.00 0.00 3.41
2712 2780 8.531146 AGAGAGAGAGAGGAAGTTTTTATTCAG 58.469 37.037 0.00 0.00 0.00 3.02
2713 2781 8.429237 AGAGAGAGAGAGGAAGTTTTTATTCA 57.571 34.615 0.00 0.00 0.00 2.57
2714 2782 8.749354 AGAGAGAGAGAGAGGAAGTTTTTATTC 58.251 37.037 0.00 0.00 0.00 1.75
2715 2783 8.664669 AGAGAGAGAGAGAGGAAGTTTTTATT 57.335 34.615 0.00 0.00 0.00 1.40
2716 2784 7.893302 TGAGAGAGAGAGAGAGGAAGTTTTTAT 59.107 37.037 0.00 0.00 0.00 1.40
2717 2785 7.235079 TGAGAGAGAGAGAGAGGAAGTTTTTA 58.765 38.462 0.00 0.00 0.00 1.52
2718 2786 6.074648 TGAGAGAGAGAGAGAGGAAGTTTTT 58.925 40.000 0.00 0.00 0.00 1.94
2719 2787 5.640147 TGAGAGAGAGAGAGAGGAAGTTTT 58.360 41.667 0.00 0.00 0.00 2.43
2720 2788 5.255397 TGAGAGAGAGAGAGAGGAAGTTT 57.745 43.478 0.00 0.00 0.00 2.66
2721 2789 4.324563 CCTGAGAGAGAGAGAGAGGAAGTT 60.325 50.000 0.00 0.00 0.00 2.66
2722 2790 3.200825 CCTGAGAGAGAGAGAGAGGAAGT 59.799 52.174 0.00 0.00 0.00 3.01
2723 2791 3.813443 CCTGAGAGAGAGAGAGAGGAAG 58.187 54.545 0.00 0.00 0.00 3.46
2724 2792 2.092429 GCCTGAGAGAGAGAGAGAGGAA 60.092 54.545 0.00 0.00 0.00 3.36
2725 2793 1.490490 GCCTGAGAGAGAGAGAGAGGA 59.510 57.143 0.00 0.00 0.00 3.71
2726 2794 1.492176 AGCCTGAGAGAGAGAGAGAGG 59.508 57.143 0.00 0.00 0.00 3.69
2727 2795 2.171237 TGAGCCTGAGAGAGAGAGAGAG 59.829 54.545 0.00 0.00 0.00 3.20
2728 2796 2.195727 TGAGCCTGAGAGAGAGAGAGA 58.804 52.381 0.00 0.00 0.00 3.10
2743 2811 1.092345 GCCGTGGAAGAGAATGAGCC 61.092 60.000 0.00 0.00 0.00 4.70
2746 2814 0.537188 GGAGCCGTGGAAGAGAATGA 59.463 55.000 0.00 0.00 0.00 2.57
2749 2817 2.646175 CCGGAGCCGTGGAAGAGAA 61.646 63.158 8.25 0.00 37.81 2.87
2758 2828 4.129737 CACGATCACCGGAGCCGT 62.130 66.667 9.46 11.01 43.93 5.68
2760 2830 4.530857 CCCACGATCACCGGAGCC 62.531 72.222 9.46 0.00 43.93 4.70
2761 2831 3.432051 CTCCCACGATCACCGGAGC 62.432 68.421 9.46 0.00 43.93 4.70
2774 2844 3.691342 CGCCCTCGTCAACTCCCA 61.691 66.667 0.00 0.00 0.00 4.37
2775 2845 4.452733 CCGCCCTCGTCAACTCCC 62.453 72.222 0.00 0.00 0.00 4.30
2785 2855 3.787001 CAGAAGGACCCCGCCCTC 61.787 72.222 0.00 0.00 32.57 4.30
2786 2856 4.332543 TCAGAAGGACCCCGCCCT 62.333 66.667 0.00 0.00 35.03 5.19
2789 2859 0.322546 AATTGTCAGAAGGACCCCGC 60.323 55.000 0.00 0.00 46.38 6.13
2798 2868 4.025040 ACTCTGATGCCAATTGTCAGAA 57.975 40.909 21.14 10.43 45.38 3.02
2835 2905 3.054875 CCAGGTCCAATCATCTTCACAGA 60.055 47.826 0.00 0.00 0.00 3.41
2841 2911 1.684248 GCTGCCAGGTCCAATCATCTT 60.684 52.381 0.00 0.00 0.00 2.40
2847 2917 2.855770 TTGGGCTGCCAGGTCCAAT 61.856 57.895 22.05 0.00 44.76 3.16
2849 2919 3.506743 TTTGGGCTGCCAGGTCCA 61.507 61.111 22.05 5.68 39.43 4.02
2860 2930 1.301677 CGTCCAGCTCTTCTTTGGGC 61.302 60.000 0.00 0.00 33.28 5.36
2864 2934 1.273886 GACTCCGTCCAGCTCTTCTTT 59.726 52.381 0.00 0.00 0.00 2.52
2874 2944 4.047059 GTTCGCCGACTCCGTCCA 62.047 66.667 0.00 0.00 0.00 4.02
2875 2945 3.966026 CTGTTCGCCGACTCCGTCC 62.966 68.421 0.00 0.00 0.00 4.79
2907 2980 3.737172 GGCGCGCTGGTGAACAAT 61.737 61.111 32.29 0.00 0.00 2.71
2936 3009 4.530857 ATAGGCCACGCACCGCTC 62.531 66.667 5.01 0.00 0.00 5.03
2937 3010 4.838152 CATAGGCCACGCACCGCT 62.838 66.667 5.01 0.00 0.00 5.52
2942 3015 1.520564 CGTAAGCATAGGCCACGCA 60.521 57.895 5.01 0.00 40.54 5.24
2957 3030 0.738063 CCACATAGTTGGTGCGCGTA 60.738 55.000 8.43 0.00 34.94 4.42
2977 3050 2.440980 GCATCAGGAGGGCCCAAC 60.441 66.667 27.56 16.78 37.41 3.77
2978 3051 2.940467 TGCATCAGGAGGGCCCAA 60.940 61.111 27.56 3.63 37.41 4.12
3047 3120 4.237809 CGATCCGTCTCGCGCTCA 62.238 66.667 5.56 0.00 39.71 4.26
3075 3148 1.142531 CTGATCGCAGCAGGCACTA 59.857 57.895 0.00 0.00 45.17 2.74
3092 3165 2.034879 CACCATTTCTCGCGGCACT 61.035 57.895 6.13 0.00 0.00 4.40
3100 3173 1.079503 GAGCGTGGACACCATTTCTC 58.920 55.000 0.00 0.00 35.28 2.87
3101 3174 0.670546 CGAGCGTGGACACCATTTCT 60.671 55.000 0.00 0.00 35.28 2.52
3104 3177 2.742372 GCGAGCGTGGACACCATT 60.742 61.111 0.00 0.00 35.28 3.16
3122 3195 4.243008 TTCGCCGTGGCCTTCACA 62.243 61.111 3.32 0.00 46.36 3.58
3125 3198 4.388499 TCCTTCGCCGTGGCCTTC 62.388 66.667 3.32 0.00 37.98 3.46
3183 3256 4.389576 CTTGGCTTCACGCACGCC 62.390 66.667 0.00 0.00 44.02 5.68
3194 3267 4.626081 AGCAACGTCGCCTTGGCT 62.626 61.111 10.12 0.00 0.00 4.75
3208 3281 4.111016 CGTACTGGCGACGGAGCA 62.111 66.667 2.64 0.00 41.09 4.26
3212 3285 3.437795 ACCTCGTACTGGCGACGG 61.438 66.667 0.00 0.00 40.70 4.79
3229 3302 1.144969 GCCGTCGTTGAACTTGATCA 58.855 50.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.