Multiple sequence alignment - TraesCS2D01G135900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G135900 chr2D 100.000 2670 0 0 1 2670 79915343 79912674 0.000000e+00 4931.0
1 TraesCS2D01G135900 chr2D 88.673 309 27 6 3 306 79927545 79927240 1.170000e-98 370.0
2 TraesCS2D01G135900 chr2D 83.000 100 11 3 363 461 79927121 79927027 4.740000e-13 86.1
3 TraesCS2D01G135900 chr7D 90.450 1644 109 25 703 2317 566263381 566265005 0.000000e+00 2122.0
4 TraesCS2D01G135900 chr7D 92.475 1475 77 21 863 2317 52508988 52507528 0.000000e+00 2078.0
5 TraesCS2D01G135900 chr7D 93.213 1164 67 12 863 2021 194466452 194465296 0.000000e+00 1701.0
6 TraesCS2D01G135900 chr7D 91.081 1166 83 13 863 2021 414108087 414109238 0.000000e+00 1557.0
7 TraesCS2D01G135900 chr7D 96.845 317 10 0 2001 2317 194465284 194464968 5.060000e-147 531.0
8 TraesCS2D01G135900 chr7D 89.384 292 11 8 2315 2605 52507458 52507186 1.520000e-92 350.0
9 TraesCS2D01G135900 chr7D 95.349 215 9 1 2090 2304 28914204 28914417 9.150000e-90 340.0
10 TraesCS2D01G135900 chr7D 84.958 359 14 12 2312 2670 566265083 566265401 7.130000e-86 327.0
11 TraesCS2D01G135900 chr7D 81.792 346 21 14 2367 2670 4430503 4430848 4.410000e-63 252.0
12 TraesCS2D01G135900 chr7D 90.741 54 5 0 2260 2313 4430457 4430510 3.690000e-09 73.1
13 TraesCS2D01G135900 chr5D 93.398 1439 80 14 863 2293 485360445 485361876 0.000000e+00 2117.0
14 TraesCS2D01G135900 chr5D 92.212 1130 77 10 863 1987 407314078 407312955 0.000000e+00 1589.0
15 TraesCS2D01G135900 chr5D 94.346 283 15 1 2036 2317 407304009 407303727 1.470000e-117 433.0
16 TraesCS2D01G135900 chr5D 85.399 363 8 13 2312 2670 485362011 485362332 4.260000e-88 335.0
17 TraesCS2D01G135900 chr7A 94.260 1359 65 5 964 2317 86424485 86423135 0.000000e+00 2065.0
18 TraesCS2D01G135900 chr7A 88.757 338 15 4 2315 2651 86423056 86422741 2.490000e-105 392.0
19 TraesCS2D01G135900 chr7A 86.517 356 12 11 2315 2670 86771219 86770900 2.530000e-95 359.0
20 TraesCS2D01G135900 chr7A 84.118 170 13 5 2458 2613 711776481 711776312 4.600000e-33 152.0
21 TraesCS2D01G135900 chr6B 92.799 1347 66 12 704 2020 69727742 69729087 0.000000e+00 1921.0
22 TraesCS2D01G135900 chr6B 91.922 359 13 7 2312 2670 69907391 69907733 3.090000e-134 488.0
23 TraesCS2D01G135900 chr6B 93.380 287 11 5 2312 2598 69940789 69941067 4.110000e-113 418.0
24 TraesCS2D01G135900 chr6B 94.286 245 14 0 2015 2259 69907044 69907288 2.510000e-100 375.0
25 TraesCS2D01G135900 chr1D 91.471 1407 89 13 925 2317 5104575 5105964 0.000000e+00 1905.0
26 TraesCS2D01G135900 chr1D 94.595 222 12 0 703 924 5094163 5094384 7.080000e-91 344.0
27 TraesCS2D01G135900 chr1D 89.003 291 13 6 2312 2599 5106042 5106316 2.550000e-90 342.0
28 TraesCS2D01G135900 chr1D 89.494 257 20 6 698 950 416017761 416018014 4.290000e-83 318.0
29 TraesCS2D01G135900 chr1D 87.892 223 13 4 2458 2666 395448020 395447798 1.590000e-62 250.0
30 TraesCS2D01G135900 chr1D 87.225 227 15 3 2458 2670 22592348 22592122 2.050000e-61 246.0
31 TraesCS2D01G135900 chr1D 82.558 86 11 4 2260 2342 395448200 395448116 3.690000e-09 73.1
32 TraesCS2D01G135900 chr4B 91.935 1240 84 16 863 2096 624600244 624599015 0.000000e+00 1722.0
33 TraesCS2D01G135900 chr1B 88.050 1364 95 32 703 2021 520809656 520808316 0.000000e+00 1554.0
34 TraesCS2D01G135900 chr1B 86.607 224 14 4 2458 2668 520807621 520807401 1.600000e-57 233.0
35 TraesCS2D01G135900 chr3D 89.381 339 6 11 2342 2670 425482240 425481922 1.490000e-107 399.0
36 TraesCS2D01G135900 chr3D 87.665 227 14 2 2458 2670 590030584 590030810 4.410000e-63 252.0
37 TraesCS2D01G135900 chr3D 90.741 54 5 0 2260 2313 70095854 70095907 3.690000e-09 73.1
38 TraesCS2D01G135900 chr5A 91.089 303 14 6 2315 2616 336617363 336617653 5.360000e-107 398.0
39 TraesCS2D01G135900 chr5A 88.789 223 13 5 2460 2670 639270120 639269898 2.040000e-66 263.0
40 TraesCS2D01G135900 chr7B 94.421 233 13 0 2036 2268 201415147 201414915 2.530000e-95 359.0
41 TraesCS2D01G135900 chr7B 96.907 194 6 0 2124 2317 201414980 201414787 2.560000e-85 326.0
42 TraesCS2D01G135900 chr7B 90.323 248 18 5 703 947 609782321 609782077 1.190000e-83 320.0
43 TraesCS2D01G135900 chr2B 87.267 322 21 10 1 303 131307846 131307526 1.520000e-92 350.0
44 TraesCS2D01G135900 chr2B 92.118 203 15 1 363 565 131307407 131307206 4.350000e-73 285.0
45 TraesCS2D01G135900 chr3B 90.726 248 14 6 709 948 466684820 466684574 3.320000e-84 322.0
46 TraesCS2D01G135900 chr5B 90.079 252 18 6 703 950 44181792 44182040 1.190000e-83 320.0
47 TraesCS2D01G135900 chr4A 89.764 254 16 8 704 950 562497331 562497081 1.540000e-82 316.0
48 TraesCS2D01G135900 chrUn 90.254 236 6 5 2365 2599 274769344 274769125 2.600000e-75 292.0
49 TraesCS2D01G135900 chr2A 79.141 326 50 7 363 688 80532062 80531755 2.690000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G135900 chr2D 79912674 79915343 2669 True 4931.00 4931 100.0000 1 2670 1 chr2D.!!$R1 2669
1 TraesCS2D01G135900 chr2D 79927027 79927545 518 True 228.05 370 85.8365 3 461 2 chr2D.!!$R2 458
2 TraesCS2D01G135900 chr7D 414108087 414109238 1151 False 1557.00 1557 91.0810 863 2021 1 chr7D.!!$F2 1158
3 TraesCS2D01G135900 chr7D 566263381 566265401 2020 False 1224.50 2122 87.7040 703 2670 2 chr7D.!!$F4 1967
4 TraesCS2D01G135900 chr7D 52507186 52508988 1802 True 1214.00 2078 90.9295 863 2605 2 chr7D.!!$R1 1742
5 TraesCS2D01G135900 chr7D 194464968 194466452 1484 True 1116.00 1701 95.0290 863 2317 2 chr7D.!!$R2 1454
6 TraesCS2D01G135900 chr5D 407312955 407314078 1123 True 1589.00 1589 92.2120 863 1987 1 chr5D.!!$R2 1124
7 TraesCS2D01G135900 chr5D 485360445 485362332 1887 False 1226.00 2117 89.3985 863 2670 2 chr5D.!!$F1 1807
8 TraesCS2D01G135900 chr7A 86422741 86424485 1744 True 1228.50 2065 91.5085 964 2651 2 chr7A.!!$R3 1687
9 TraesCS2D01G135900 chr6B 69727742 69729087 1345 False 1921.00 1921 92.7990 704 2020 1 chr6B.!!$F1 1316
10 TraesCS2D01G135900 chr6B 69907044 69907733 689 False 431.50 488 93.1040 2015 2670 2 chr6B.!!$F3 655
11 TraesCS2D01G135900 chr1D 5104575 5106316 1741 False 1123.50 1905 90.2370 925 2599 2 chr1D.!!$F3 1674
12 TraesCS2D01G135900 chr4B 624599015 624600244 1229 True 1722.00 1722 91.9350 863 2096 1 chr4B.!!$R1 1233
13 TraesCS2D01G135900 chr1B 520807401 520809656 2255 True 893.50 1554 87.3285 703 2668 2 chr1B.!!$R1 1965
14 TraesCS2D01G135900 chr2B 131307206 131307846 640 True 317.50 350 89.6925 1 565 2 chr2B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 309 0.030235 GGCGCACTTTCCGTTTTTCT 59.97 50.0 10.83 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2172 1.455248 TGGGCCTCGTTATTTTTCCG 58.545 50.0 4.53 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 158 6.456795 TGAGATCCAGTATATATTGAGCCG 57.543 41.667 6.81 0.00 0.00 5.52
149 159 5.952347 TGAGATCCAGTATATATTGAGCCGT 59.048 40.000 6.81 0.00 0.00 5.68
150 160 7.116736 TGAGATCCAGTATATATTGAGCCGTA 58.883 38.462 6.81 0.00 0.00 4.02
151 161 7.283354 TGAGATCCAGTATATATTGAGCCGTAG 59.717 40.741 6.81 0.00 0.00 3.51
152 162 7.120051 AGATCCAGTATATATTGAGCCGTAGT 58.880 38.462 6.81 0.00 0.00 2.73
153 163 6.510879 TCCAGTATATATTGAGCCGTAGTG 57.489 41.667 6.81 0.00 0.00 2.74
154 164 6.008331 TCCAGTATATATTGAGCCGTAGTGT 58.992 40.000 6.81 0.00 0.00 3.55
155 165 6.492429 TCCAGTATATATTGAGCCGTAGTGTT 59.508 38.462 6.81 0.00 0.00 3.32
156 166 7.014905 TCCAGTATATATTGAGCCGTAGTGTTT 59.985 37.037 6.81 0.00 0.00 2.83
157 167 7.116376 CCAGTATATATTGAGCCGTAGTGTTTG 59.884 40.741 6.81 0.00 0.00 2.93
158 168 7.865889 CAGTATATATTGAGCCGTAGTGTTTGA 59.134 37.037 0.00 0.00 0.00 2.69
159 169 8.585881 AGTATATATTGAGCCGTAGTGTTTGAT 58.414 33.333 0.00 0.00 0.00 2.57
160 170 9.204570 GTATATATTGAGCCGTAGTGTTTGATT 57.795 33.333 0.00 0.00 0.00 2.57
161 171 8.677148 ATATATTGAGCCGTAGTGTTTGATTT 57.323 30.769 0.00 0.00 0.00 2.17
162 172 4.481930 TTGAGCCGTAGTGTTTGATTTG 57.518 40.909 0.00 0.00 0.00 2.32
163 173 2.811431 TGAGCCGTAGTGTTTGATTTGG 59.189 45.455 0.00 0.00 0.00 3.28
164 174 2.159382 AGCCGTAGTGTTTGATTTGGG 58.841 47.619 0.00 0.00 0.00 4.12
165 175 1.883926 GCCGTAGTGTTTGATTTGGGT 59.116 47.619 0.00 0.00 0.00 4.51
166 176 2.351350 GCCGTAGTGTTTGATTTGGGTG 60.351 50.000 0.00 0.00 0.00 4.61
167 177 2.351350 CCGTAGTGTTTGATTTGGGTGC 60.351 50.000 0.00 0.00 0.00 5.01
168 178 2.664424 CGTAGTGTTTGATTTGGGTGCG 60.664 50.000 0.00 0.00 0.00 5.34
169 179 0.031994 AGTGTTTGATTTGGGTGCGC 59.968 50.000 0.00 0.00 0.00 6.09
170 180 0.943835 GTGTTTGATTTGGGTGCGCC 60.944 55.000 8.12 8.12 0.00 6.53
171 181 1.365633 GTTTGATTTGGGTGCGCCA 59.634 52.632 19.98 0.96 36.17 5.69
172 182 0.249657 GTTTGATTTGGGTGCGCCAA 60.250 50.000 19.98 3.00 36.17 4.52
173 183 0.249657 TTTGATTTGGGTGCGCCAAC 60.250 50.000 19.98 1.53 36.17 3.77
174 184 1.395045 TTGATTTGGGTGCGCCAACA 61.395 50.000 19.98 4.69 36.17 3.33
175 185 1.080569 GATTTGGGTGCGCCAACAG 60.081 57.895 19.98 0.00 36.17 3.16
176 186 3.225069 ATTTGGGTGCGCCAACAGC 62.225 57.895 19.98 0.00 37.32 4.40
185 195 4.285149 GCCAACAGCGCGCGATAG 62.285 66.667 37.18 23.89 0.00 2.08
186 196 2.582226 CCAACAGCGCGCGATAGA 60.582 61.111 37.18 0.00 39.76 1.98
187 197 1.951130 CCAACAGCGCGCGATAGAT 60.951 57.895 37.18 14.09 39.76 1.98
188 198 1.200103 CAACAGCGCGCGATAGATG 59.800 57.895 37.18 22.38 39.76 2.90
189 199 1.951130 AACAGCGCGCGATAGATGG 60.951 57.895 37.18 18.23 39.76 3.51
190 200 2.355126 CAGCGCGCGATAGATGGT 60.355 61.111 37.18 4.13 39.76 3.55
191 201 1.081442 CAGCGCGCGATAGATGGTA 60.081 57.895 37.18 0.00 39.76 3.25
192 202 1.067743 CAGCGCGCGATAGATGGTAG 61.068 60.000 37.18 9.00 39.76 3.18
193 203 2.437343 GCGCGCGATAGATGGTAGC 61.437 63.158 37.18 6.90 39.76 3.58
199 209 3.495670 GCGATAGATGGTAGCGAATCT 57.504 47.619 0.00 1.02 37.01 2.40
200 210 3.839293 GCGATAGATGGTAGCGAATCTT 58.161 45.455 0.65 0.00 34.91 2.40
201 211 3.854809 GCGATAGATGGTAGCGAATCTTC 59.145 47.826 0.65 0.00 34.91 2.87
202 212 4.380023 GCGATAGATGGTAGCGAATCTTCT 60.380 45.833 0.65 0.00 34.91 2.85
203 213 5.092105 CGATAGATGGTAGCGAATCTTCTG 58.908 45.833 0.65 0.00 34.91 3.02
204 214 3.104843 AGATGGTAGCGAATCTTCTGC 57.895 47.619 0.00 0.55 28.51 4.26
205 215 2.432146 AGATGGTAGCGAATCTTCTGCA 59.568 45.455 0.00 0.00 28.51 4.41
206 216 2.299993 TGGTAGCGAATCTTCTGCAG 57.700 50.000 7.63 7.63 32.08 4.41
207 217 1.550524 TGGTAGCGAATCTTCTGCAGT 59.449 47.619 14.67 0.00 32.08 4.40
208 218 2.028112 TGGTAGCGAATCTTCTGCAGTT 60.028 45.455 14.67 0.00 32.08 3.16
209 219 3.194755 TGGTAGCGAATCTTCTGCAGTTA 59.805 43.478 14.67 2.24 32.08 2.24
210 220 3.552294 GGTAGCGAATCTTCTGCAGTTAC 59.448 47.826 14.67 0.00 32.08 2.50
211 221 3.319137 AGCGAATCTTCTGCAGTTACA 57.681 42.857 14.67 0.00 32.08 2.41
212 222 2.996621 AGCGAATCTTCTGCAGTTACAC 59.003 45.455 14.67 1.92 32.08 2.90
213 223 2.996621 GCGAATCTTCTGCAGTTACACT 59.003 45.455 14.67 0.00 0.00 3.55
228 238 7.672983 CAGTTACACTGTTTCTACCAATGAT 57.327 36.000 0.00 0.00 41.19 2.45
229 239 7.743104 CAGTTACACTGTTTCTACCAATGATC 58.257 38.462 0.00 0.00 41.19 2.92
230 240 6.590292 AGTTACACTGTTTCTACCAATGATCG 59.410 38.462 0.00 0.00 0.00 3.69
231 241 3.684788 ACACTGTTTCTACCAATGATCGC 59.315 43.478 0.00 0.00 0.00 4.58
232 242 3.935203 CACTGTTTCTACCAATGATCGCT 59.065 43.478 0.00 0.00 0.00 4.93
233 243 4.033358 CACTGTTTCTACCAATGATCGCTC 59.967 45.833 0.00 0.00 0.00 5.03
234 244 4.183865 CTGTTTCTACCAATGATCGCTCA 58.816 43.478 0.00 0.00 35.41 4.26
235 245 4.574892 TGTTTCTACCAATGATCGCTCAA 58.425 39.130 0.00 0.00 34.37 3.02
236 246 5.000591 TGTTTCTACCAATGATCGCTCAAA 58.999 37.500 0.00 0.00 34.37 2.69
237 247 5.106712 TGTTTCTACCAATGATCGCTCAAAC 60.107 40.000 0.00 0.00 34.37 2.93
238 248 4.471904 TCTACCAATGATCGCTCAAACT 57.528 40.909 0.00 0.00 34.37 2.66
239 249 4.183865 TCTACCAATGATCGCTCAAACTG 58.816 43.478 0.00 0.00 34.37 3.16
240 250 1.470098 ACCAATGATCGCTCAAACTGC 59.530 47.619 0.00 0.00 34.37 4.40
247 257 4.090057 GCTCAAACTGCGGTCGCC 62.090 66.667 12.94 0.00 41.09 5.54
257 267 2.029073 CGGTCGCCGCTGGATTAT 59.971 61.111 5.38 0.00 41.17 1.28
258 268 1.287815 CGGTCGCCGCTGGATTATA 59.712 57.895 5.38 0.00 41.17 0.98
259 269 0.732880 CGGTCGCCGCTGGATTATAG 60.733 60.000 5.38 0.00 41.17 1.31
260 270 0.389948 GGTCGCCGCTGGATTATAGG 60.390 60.000 0.00 0.00 0.00 2.57
261 271 1.014564 GTCGCCGCTGGATTATAGGC 61.015 60.000 0.00 0.00 44.00 3.93
262 272 3.876300 GCCGCTGGATTATAGGCG 58.124 61.111 0.00 0.00 45.97 5.52
263 273 2.391389 GCCGCTGGATTATAGGCGC 61.391 63.158 0.00 0.00 45.21 6.53
264 274 1.741770 CCGCTGGATTATAGGCGCC 60.742 63.158 21.89 21.89 45.21 6.53
265 275 1.293498 CGCTGGATTATAGGCGCCT 59.707 57.895 34.85 34.85 41.08 5.52
266 276 0.320771 CGCTGGATTATAGGCGCCTT 60.321 55.000 37.74 23.87 41.08 4.35
267 277 1.443802 GCTGGATTATAGGCGCCTTC 58.556 55.000 37.74 25.64 0.00 3.46
268 278 1.002544 GCTGGATTATAGGCGCCTTCT 59.997 52.381 37.74 24.51 0.00 2.85
269 279 2.551071 GCTGGATTATAGGCGCCTTCTT 60.551 50.000 37.74 21.98 0.00 2.52
270 280 3.306780 GCTGGATTATAGGCGCCTTCTTA 60.307 47.826 37.74 18.22 0.00 2.10
271 281 4.499183 CTGGATTATAGGCGCCTTCTTAG 58.501 47.826 37.74 21.81 0.00 2.18
272 282 3.901844 TGGATTATAGGCGCCTTCTTAGT 59.098 43.478 37.74 19.94 0.00 2.24
273 283 4.021368 TGGATTATAGGCGCCTTCTTAGTC 60.021 45.833 37.74 25.77 0.00 2.59
274 284 3.637998 TTATAGGCGCCTTCTTAGTCG 57.362 47.619 37.74 0.00 0.00 4.18
275 285 0.032267 ATAGGCGCCTTCTTAGTCGC 59.968 55.000 37.74 0.00 45.99 5.19
277 287 2.125673 GCGCCTTCTTAGTCGCCA 60.126 61.111 0.00 0.00 41.53 5.69
278 288 2.167861 GCGCCTTCTTAGTCGCCAG 61.168 63.158 0.00 0.00 41.53 4.85
279 289 1.215647 CGCCTTCTTAGTCGCCAGT 59.784 57.895 0.00 0.00 0.00 4.00
280 290 1.078759 CGCCTTCTTAGTCGCCAGTG 61.079 60.000 0.00 0.00 0.00 3.66
281 291 0.741221 GCCTTCTTAGTCGCCAGTGG 60.741 60.000 4.20 4.20 0.00 4.00
282 292 0.741221 CCTTCTTAGTCGCCAGTGGC 60.741 60.000 25.07 25.07 46.75 5.01
291 301 4.043200 GCCAGTGGCGCACTTTCC 62.043 66.667 20.55 0.00 42.59 3.13
292 302 3.726517 CCAGTGGCGCACTTTCCG 61.727 66.667 10.83 0.00 42.59 4.30
293 303 2.972505 CAGTGGCGCACTTTCCGT 60.973 61.111 10.83 0.00 42.59 4.69
294 304 2.203153 AGTGGCGCACTTTCCGTT 60.203 55.556 10.83 0.00 42.59 4.44
295 305 1.822186 AGTGGCGCACTTTCCGTTT 60.822 52.632 10.83 0.00 42.59 3.60
296 306 1.065109 GTGGCGCACTTTCCGTTTT 59.935 52.632 10.83 0.00 0.00 2.43
297 307 0.526739 GTGGCGCACTTTCCGTTTTT 60.527 50.000 10.83 0.00 0.00 1.94
298 308 0.248702 TGGCGCACTTTCCGTTTTTC 60.249 50.000 10.83 0.00 0.00 2.29
299 309 0.030235 GGCGCACTTTCCGTTTTTCT 59.970 50.000 10.83 0.00 0.00 2.52
300 310 1.395670 GCGCACTTTCCGTTTTTCTC 58.604 50.000 0.30 0.00 0.00 2.87
301 311 1.268335 GCGCACTTTCCGTTTTTCTCA 60.268 47.619 0.30 0.00 0.00 3.27
302 312 2.372350 CGCACTTTCCGTTTTTCTCAC 58.628 47.619 0.00 0.00 0.00 3.51
303 313 2.727777 GCACTTTCCGTTTTTCTCACC 58.272 47.619 0.00 0.00 0.00 4.02
304 314 2.543031 GCACTTTCCGTTTTTCTCACCC 60.543 50.000 0.00 0.00 0.00 4.61
305 315 1.944709 ACTTTCCGTTTTTCTCACCCG 59.055 47.619 0.00 0.00 0.00 5.28
306 316 1.265905 CTTTCCGTTTTTCTCACCCGG 59.734 52.381 0.00 0.00 39.98 5.73
307 317 1.167781 TTCCGTTTTTCTCACCCGGC 61.168 55.000 0.00 0.00 38.54 6.13
308 318 2.554272 CGTTTTTCTCACCCGGCG 59.446 61.111 0.00 0.00 0.00 6.46
309 319 1.957186 CGTTTTTCTCACCCGGCGA 60.957 57.895 9.30 0.00 0.00 5.54
310 320 1.572941 GTTTTTCTCACCCGGCGAC 59.427 57.895 9.30 0.00 0.00 5.19
330 340 3.428282 GGCGCAACCGTCGGAATT 61.428 61.111 20.51 0.00 36.67 2.17
331 341 2.559330 GCGCAACCGTCGGAATTT 59.441 55.556 20.51 0.00 36.67 1.82
332 342 1.081708 GCGCAACCGTCGGAATTTT 60.082 52.632 20.51 0.00 36.67 1.82
333 343 1.334288 GCGCAACCGTCGGAATTTTG 61.334 55.000 20.51 12.98 36.67 2.44
334 344 1.334288 CGCAACCGTCGGAATTTTGC 61.334 55.000 20.51 21.03 39.35 3.68
335 345 0.318275 GCAACCGTCGGAATTTTGCA 60.318 50.000 24.55 0.00 41.77 4.08
336 346 1.404477 CAACCGTCGGAATTTTGCAC 58.596 50.000 20.51 0.00 0.00 4.57
337 347 0.040781 AACCGTCGGAATTTTGCACG 60.041 50.000 20.51 0.00 0.00 5.34
338 348 0.881159 ACCGTCGGAATTTTGCACGA 60.881 50.000 20.51 0.00 32.08 4.35
339 349 0.236187 CCGTCGGAATTTTGCACGAA 59.764 50.000 4.91 0.00 37.08 3.85
340 350 1.135803 CCGTCGGAATTTTGCACGAAT 60.136 47.619 4.91 0.00 37.08 3.34
341 351 2.166007 CGTCGGAATTTTGCACGAATC 58.834 47.619 0.00 0.00 37.08 2.52
342 352 2.159707 CGTCGGAATTTTGCACGAATCT 60.160 45.455 0.00 0.00 37.08 2.40
343 353 3.417185 GTCGGAATTTTGCACGAATCTC 58.583 45.455 0.00 0.00 37.08 2.75
344 354 2.418628 TCGGAATTTTGCACGAATCTCC 59.581 45.455 0.00 0.34 31.79 3.71
345 355 2.161410 CGGAATTTTGCACGAATCTCCA 59.839 45.455 15.47 0.00 0.00 3.86
346 356 3.501950 GGAATTTTGCACGAATCTCCAC 58.498 45.455 0.00 0.00 0.00 4.02
347 357 3.191371 GGAATTTTGCACGAATCTCCACT 59.809 43.478 0.00 0.00 0.00 4.00
348 358 4.406943 GAATTTTGCACGAATCTCCACTC 58.593 43.478 0.00 0.00 0.00 3.51
349 359 2.542020 TTTGCACGAATCTCCACTCA 57.458 45.000 0.00 0.00 0.00 3.41
350 360 1.795768 TTGCACGAATCTCCACTCAC 58.204 50.000 0.00 0.00 0.00 3.51
351 361 0.388520 TGCACGAATCTCCACTCACG 60.389 55.000 0.00 0.00 0.00 4.35
352 362 1.687494 GCACGAATCTCCACTCACGC 61.687 60.000 0.00 0.00 0.00 5.34
353 363 0.388520 CACGAATCTCCACTCACGCA 60.389 55.000 0.00 0.00 0.00 5.24
354 364 0.388649 ACGAATCTCCACTCACGCAC 60.389 55.000 0.00 0.00 0.00 5.34
355 365 0.388520 CGAATCTCCACTCACGCACA 60.389 55.000 0.00 0.00 0.00 4.57
356 366 1.795768 GAATCTCCACTCACGCACAA 58.204 50.000 0.00 0.00 0.00 3.33
357 367 2.350522 GAATCTCCACTCACGCACAAT 58.649 47.619 0.00 0.00 0.00 2.71
358 368 1.730501 ATCTCCACTCACGCACAATG 58.269 50.000 0.00 0.00 0.00 2.82
359 369 0.678950 TCTCCACTCACGCACAATGA 59.321 50.000 0.00 0.00 0.00 2.57
360 370 1.276138 TCTCCACTCACGCACAATGAT 59.724 47.619 0.00 0.00 0.00 2.45
361 371 2.079158 CTCCACTCACGCACAATGATT 58.921 47.619 0.00 0.00 0.00 2.57
362 372 1.805943 TCCACTCACGCACAATGATTG 59.194 47.619 3.16 3.16 0.00 2.67
363 373 1.536766 CCACTCACGCACAATGATTGT 59.463 47.619 4.72 4.72 46.75 2.71
364 374 2.030893 CCACTCACGCACAATGATTGTT 60.031 45.455 8.30 0.00 43.23 2.83
365 375 3.228749 CACTCACGCACAATGATTGTTC 58.771 45.455 8.30 2.66 43.23 3.18
368 378 3.681705 CGCACAATGATTGTTCGCT 57.318 47.368 16.38 0.00 42.63 4.93
369 379 1.527696 CGCACAATGATTGTTCGCTC 58.472 50.000 16.38 0.54 42.63 5.03
370 380 1.791555 CGCACAATGATTGTTCGCTCC 60.792 52.381 16.38 0.00 42.63 4.70
371 381 1.470098 GCACAATGATTGTTCGCTCCT 59.530 47.619 8.30 0.00 43.23 3.69
372 382 2.095059 GCACAATGATTGTTCGCTCCTT 60.095 45.455 8.30 0.00 43.23 3.36
373 383 3.612479 GCACAATGATTGTTCGCTCCTTT 60.612 43.478 8.30 0.00 43.23 3.11
374 384 4.549458 CACAATGATTGTTCGCTCCTTTT 58.451 39.130 8.30 0.00 43.23 2.27
375 385 4.618489 CACAATGATTGTTCGCTCCTTTTC 59.382 41.667 8.30 0.00 43.23 2.29
376 386 4.168760 CAATGATTGTTCGCTCCTTTTCC 58.831 43.478 0.00 0.00 0.00 3.13
377 387 1.804151 TGATTGTTCGCTCCTTTTCCG 59.196 47.619 0.00 0.00 0.00 4.30
378 388 2.073816 GATTGTTCGCTCCTTTTCCGA 58.926 47.619 0.00 0.00 0.00 4.55
379 389 2.178912 TTGTTCGCTCCTTTTCCGAT 57.821 45.000 0.00 0.00 0.00 4.18
380 390 2.178912 TGTTCGCTCCTTTTCCGATT 57.821 45.000 0.00 0.00 0.00 3.34
381 391 2.073816 TGTTCGCTCCTTTTCCGATTC 58.926 47.619 0.00 0.00 0.00 2.52
382 392 1.397343 GTTCGCTCCTTTTCCGATTCC 59.603 52.381 0.00 0.00 0.00 3.01
383 393 0.459585 TCGCTCCTTTTCCGATTCCG 60.460 55.000 0.00 0.00 0.00 4.30
384 394 1.722082 GCTCCTTTTCCGATTCCGC 59.278 57.895 0.00 0.00 0.00 5.54
385 395 2.006772 CTCCTTTTCCGATTCCGCG 58.993 57.895 0.00 0.00 0.00 6.46
386 396 2.036764 CTCCTTTTCCGATTCCGCGC 62.037 60.000 0.00 0.00 0.00 6.86
387 397 2.021380 CTTTTCCGATTCCGCGCG 59.979 61.111 25.67 25.67 0.00 6.86
388 398 2.432800 TTTTCCGATTCCGCGCGA 60.433 55.556 34.63 13.72 0.00 5.87
389 399 1.962092 CTTTTCCGATTCCGCGCGAA 61.962 55.000 34.63 23.18 34.14 4.70
390 400 2.230484 TTTTCCGATTCCGCGCGAAC 62.230 55.000 34.63 17.43 31.79 3.95
391 401 3.636313 TTCCGATTCCGCGCGAACT 62.636 57.895 34.63 15.03 31.79 3.01
392 402 3.186047 CCGATTCCGCGCGAACTT 61.186 61.111 34.63 13.14 31.79 2.66
393 403 2.020016 CGATTCCGCGCGAACTTG 59.980 61.111 34.63 14.77 31.79 3.16
394 404 2.399611 GATTCCGCGCGAACTTGG 59.600 61.111 34.63 13.91 31.79 3.61
395 405 3.718480 GATTCCGCGCGAACTTGGC 62.718 63.158 34.63 9.77 31.79 4.52
396 406 4.980805 TTCCGCGCGAACTTGGCT 62.981 61.111 34.63 0.00 0.00 4.75
397 407 4.980805 TCCGCGCGAACTTGGCTT 62.981 61.111 34.63 0.00 0.00 4.35
398 408 4.025401 CCGCGCGAACTTGGCTTT 62.025 61.111 34.63 0.00 0.00 3.51
399 409 2.796617 CGCGCGAACTTGGCTTTG 60.797 61.111 28.94 0.00 0.00 2.77
400 410 2.429069 GCGCGAACTTGGCTTTGG 60.429 61.111 12.10 0.00 0.00 3.28
401 411 2.903547 GCGCGAACTTGGCTTTGGA 61.904 57.895 12.10 0.00 0.00 3.53
402 412 1.207593 CGCGAACTTGGCTTTGGAG 59.792 57.895 0.00 0.00 0.00 3.86
411 421 2.357034 GCTTTGGAGCCGTGACGA 60.357 61.111 6.54 0.00 43.29 4.20
412 422 1.741770 GCTTTGGAGCCGTGACGAT 60.742 57.895 6.54 0.00 43.29 3.73
413 423 0.459585 GCTTTGGAGCCGTGACGATA 60.460 55.000 6.54 0.00 43.29 2.92
414 424 1.806623 GCTTTGGAGCCGTGACGATAT 60.807 52.381 6.54 0.00 43.29 1.63
415 425 2.545113 GCTTTGGAGCCGTGACGATATA 60.545 50.000 6.54 0.00 43.29 0.86
416 426 3.861131 GCTTTGGAGCCGTGACGATATAT 60.861 47.826 6.54 0.00 43.29 0.86
417 427 3.570926 TTGGAGCCGTGACGATATATC 57.429 47.619 6.54 2.34 0.00 1.63
429 439 3.953874 CGATATATCGTCATCTCCGCT 57.046 47.619 23.97 0.00 44.74 5.52
430 440 3.867665 CGATATATCGTCATCTCCGCTC 58.132 50.000 23.97 0.00 44.74 5.03
431 441 3.303461 CGATATATCGTCATCTCCGCTCC 60.303 52.174 23.97 0.00 44.74 4.70
432 442 2.208132 ATATCGTCATCTCCGCTCCT 57.792 50.000 0.00 0.00 0.00 3.69
433 443 1.982660 TATCGTCATCTCCGCTCCTT 58.017 50.000 0.00 0.00 0.00 3.36
434 444 0.671251 ATCGTCATCTCCGCTCCTTC 59.329 55.000 0.00 0.00 0.00 3.46
435 445 0.394488 TCGTCATCTCCGCTCCTTCT 60.394 55.000 0.00 0.00 0.00 2.85
436 446 1.134189 TCGTCATCTCCGCTCCTTCTA 60.134 52.381 0.00 0.00 0.00 2.10
437 447 1.265635 CGTCATCTCCGCTCCTTCTAG 59.734 57.143 0.00 0.00 0.00 2.43
438 448 2.303175 GTCATCTCCGCTCCTTCTAGT 58.697 52.381 0.00 0.00 0.00 2.57
439 449 2.292292 GTCATCTCCGCTCCTTCTAGTC 59.708 54.545 0.00 0.00 0.00 2.59
440 450 2.173782 TCATCTCCGCTCCTTCTAGTCT 59.826 50.000 0.00 0.00 0.00 3.24
441 451 2.810870 TCTCCGCTCCTTCTAGTCTT 57.189 50.000 0.00 0.00 0.00 3.01
442 452 2.645802 TCTCCGCTCCTTCTAGTCTTC 58.354 52.381 0.00 0.00 0.00 2.87
443 453 2.240160 TCTCCGCTCCTTCTAGTCTTCT 59.760 50.000 0.00 0.00 0.00 2.85
444 454 3.455177 TCTCCGCTCCTTCTAGTCTTCTA 59.545 47.826 0.00 0.00 0.00 2.10
445 455 3.811083 TCCGCTCCTTCTAGTCTTCTAG 58.189 50.000 0.00 0.00 43.48 2.43
457 467 7.589958 TCTAGTCTTCTAGATCCACCATTTC 57.410 40.000 0.00 0.00 45.11 2.17
458 468 5.269505 AGTCTTCTAGATCCACCATTTCG 57.730 43.478 0.00 0.00 0.00 3.46
459 469 4.956700 AGTCTTCTAGATCCACCATTTCGA 59.043 41.667 0.00 0.00 0.00 3.71
460 470 5.600484 AGTCTTCTAGATCCACCATTTCGAT 59.400 40.000 0.00 0.00 0.00 3.59
461 471 5.694006 GTCTTCTAGATCCACCATTTCGATG 59.306 44.000 0.00 0.00 0.00 3.84
462 472 4.607293 TCTAGATCCACCATTTCGATGG 57.393 45.455 3.43 3.43 46.92 3.51
463 473 2.645838 AGATCCACCATTTCGATGGG 57.354 50.000 9.79 3.22 45.84 4.00
464 474 0.954452 GATCCACCATTTCGATGGGC 59.046 55.000 9.79 0.00 45.84 5.36
465 475 0.552848 ATCCACCATTTCGATGGGCT 59.447 50.000 9.79 0.00 45.84 5.19
466 476 0.107214 TCCACCATTTCGATGGGCTC 60.107 55.000 9.79 0.00 45.84 4.70
467 477 0.107017 CCACCATTTCGATGGGCTCT 60.107 55.000 9.79 0.00 45.84 4.09
468 478 1.140852 CCACCATTTCGATGGGCTCTA 59.859 52.381 9.79 0.00 45.84 2.43
469 479 2.213499 CACCATTTCGATGGGCTCTAC 58.787 52.381 9.79 0.00 45.84 2.59
470 480 2.119495 ACCATTTCGATGGGCTCTACT 58.881 47.619 9.79 0.00 45.84 2.57
471 481 2.505819 ACCATTTCGATGGGCTCTACTT 59.494 45.455 9.79 0.00 45.84 2.24
472 482 3.134458 CCATTTCGATGGGCTCTACTTC 58.866 50.000 0.00 0.00 38.04 3.01
473 483 2.981859 TTTCGATGGGCTCTACTTCC 57.018 50.000 0.00 0.00 0.00 3.46
474 484 1.860641 TTCGATGGGCTCTACTTCCA 58.139 50.000 0.00 0.00 34.79 3.53
475 485 2.088104 TCGATGGGCTCTACTTCCAT 57.912 50.000 0.00 0.00 43.29 3.41
476 486 2.398588 TCGATGGGCTCTACTTCCATT 58.601 47.619 0.00 0.00 40.96 3.16
477 487 2.365617 TCGATGGGCTCTACTTCCATTC 59.634 50.000 0.00 0.00 40.96 2.67
478 488 2.103094 CGATGGGCTCTACTTCCATTCA 59.897 50.000 0.00 0.00 40.96 2.57
479 489 3.432186 CGATGGGCTCTACTTCCATTCAA 60.432 47.826 0.00 0.00 40.96 2.69
480 490 4.723309 GATGGGCTCTACTTCCATTCAAT 58.277 43.478 0.00 0.00 40.96 2.57
481 491 3.889815 TGGGCTCTACTTCCATTCAATG 58.110 45.455 0.00 0.00 0.00 2.82
482 492 3.266772 TGGGCTCTACTTCCATTCAATGT 59.733 43.478 0.00 0.00 0.00 2.71
483 493 3.879892 GGGCTCTACTTCCATTCAATGTC 59.120 47.826 0.00 0.00 0.00 3.06
484 494 4.384647 GGGCTCTACTTCCATTCAATGTCT 60.385 45.833 0.00 0.00 0.00 3.41
485 495 5.189180 GGCTCTACTTCCATTCAATGTCTT 58.811 41.667 0.00 0.00 0.00 3.01
486 496 6.349300 GGCTCTACTTCCATTCAATGTCTTA 58.651 40.000 0.00 0.00 0.00 2.10
487 497 6.481644 GGCTCTACTTCCATTCAATGTCTTAG 59.518 42.308 0.00 0.00 0.00 2.18
488 498 6.481644 GCTCTACTTCCATTCAATGTCTTAGG 59.518 42.308 0.00 0.00 0.00 2.69
489 499 7.633772 GCTCTACTTCCATTCAATGTCTTAGGA 60.634 40.741 0.00 0.00 0.00 2.94
490 500 7.786030 TCTACTTCCATTCAATGTCTTAGGAG 58.214 38.462 0.00 0.00 0.00 3.69
491 501 6.627087 ACTTCCATTCAATGTCTTAGGAGA 57.373 37.500 0.00 0.00 0.00 3.71
503 513 4.222124 TCTTAGGAGACTCCAAATTGCC 57.778 45.455 23.60 0.00 43.67 4.52
504 514 2.691409 TAGGAGACTCCAAATTGCCG 57.309 50.000 23.60 0.00 43.67 5.69
505 515 0.678048 AGGAGACTCCAAATTGCCGC 60.678 55.000 23.60 0.00 39.61 6.53
506 516 1.657751 GGAGACTCCAAATTGCCGCC 61.658 60.000 17.10 0.00 36.28 6.13
507 517 0.960364 GAGACTCCAAATTGCCGCCA 60.960 55.000 0.00 0.00 0.00 5.69
508 518 0.962356 AGACTCCAAATTGCCGCCAG 60.962 55.000 0.00 0.00 0.00 4.85
509 519 1.937546 GACTCCAAATTGCCGCCAGG 61.938 60.000 0.00 0.00 41.62 4.45
510 520 2.679642 TCCAAATTGCCGCCAGGG 60.680 61.111 0.00 0.00 38.20 4.45
511 521 2.679642 CCAAATTGCCGCCAGGGA 60.680 61.111 0.00 0.00 38.47 4.20
512 522 2.713967 CCAAATTGCCGCCAGGGAG 61.714 63.158 0.00 0.00 39.70 4.30
513 523 1.978617 CAAATTGCCGCCAGGGAGT 60.979 57.895 0.00 0.00 39.70 3.85
514 524 0.679640 CAAATTGCCGCCAGGGAGTA 60.680 55.000 0.00 0.00 39.70 2.59
515 525 0.039035 AAATTGCCGCCAGGGAGTAA 59.961 50.000 0.00 0.00 39.70 2.24
516 526 0.258774 AATTGCCGCCAGGGAGTAAT 59.741 50.000 0.00 0.00 39.70 1.89
517 527 0.466189 ATTGCCGCCAGGGAGTAATG 60.466 55.000 0.00 0.00 39.70 1.90
518 528 2.203209 GCCGCCAGGGAGTAATGG 60.203 66.667 0.00 0.00 38.47 3.16
523 533 3.386543 CCAGGGAGTAATGGCGAAG 57.613 57.895 0.00 0.00 0.00 3.79
524 534 0.179045 CCAGGGAGTAATGGCGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
525 535 0.179045 CAGGGAGTAATGGCGAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
526 536 1.148498 GGGAGTAATGGCGAAGGGG 59.852 63.158 0.00 0.00 0.00 4.79
527 537 1.526225 GGAGTAATGGCGAAGGGGC 60.526 63.158 0.00 0.00 42.69 5.80
528 538 1.887707 GAGTAATGGCGAAGGGGCG 60.888 63.158 0.00 0.00 46.04 6.13
529 539 2.124860 GTAATGGCGAAGGGGCGT 60.125 61.111 0.00 0.00 46.04 5.68
530 540 2.178235 GTAATGGCGAAGGGGCGTC 61.178 63.158 0.00 0.00 46.04 5.19
531 541 3.726595 TAATGGCGAAGGGGCGTCG 62.727 63.158 0.00 0.00 46.04 5.12
534 544 4.867599 GGCGAAGGGGCGTCGTAG 62.868 72.222 5.88 0.00 40.64 3.51
536 546 3.823330 CGAAGGGGCGTCGTAGCT 61.823 66.667 0.00 0.00 37.29 3.32
537 547 2.104530 GAAGGGGCGTCGTAGCTC 59.895 66.667 0.00 0.92 37.29 4.09
538 548 3.753070 GAAGGGGCGTCGTAGCTCG 62.753 68.421 0.00 0.00 38.83 5.03
539 549 4.790962 AGGGGCGTCGTAGCTCGA 62.791 66.667 0.00 0.00 46.83 4.04
548 558 1.880271 TCGTAGCTCGAGATAGTGGG 58.120 55.000 18.75 4.19 44.01 4.61
549 559 1.415289 TCGTAGCTCGAGATAGTGGGA 59.585 52.381 18.75 6.60 44.01 4.37
550 560 1.801771 CGTAGCTCGAGATAGTGGGAG 59.198 57.143 18.75 0.00 42.86 4.30
551 561 2.156098 GTAGCTCGAGATAGTGGGAGG 58.844 57.143 18.75 0.00 0.00 4.30
552 562 0.847373 AGCTCGAGATAGTGGGAGGA 59.153 55.000 18.75 0.00 0.00 3.71
553 563 1.215673 AGCTCGAGATAGTGGGAGGAA 59.784 52.381 18.75 0.00 0.00 3.36
554 564 2.032620 GCTCGAGATAGTGGGAGGAAA 58.967 52.381 18.75 0.00 0.00 3.13
555 565 2.035321 GCTCGAGATAGTGGGAGGAAAG 59.965 54.545 18.75 0.00 0.00 2.62
556 566 2.625790 CTCGAGATAGTGGGAGGAAAGG 59.374 54.545 6.58 0.00 0.00 3.11
557 567 2.243994 TCGAGATAGTGGGAGGAAAGGA 59.756 50.000 0.00 0.00 0.00 3.36
558 568 2.625790 CGAGATAGTGGGAGGAAAGGAG 59.374 54.545 0.00 0.00 0.00 3.69
559 569 3.648739 GAGATAGTGGGAGGAAAGGAGT 58.351 50.000 0.00 0.00 0.00 3.85
560 570 4.689150 CGAGATAGTGGGAGGAAAGGAGTA 60.689 50.000 0.00 0.00 0.00 2.59
561 571 4.810345 AGATAGTGGGAGGAAAGGAGTAG 58.190 47.826 0.00 0.00 0.00 2.57
562 572 2.255770 AGTGGGAGGAAAGGAGTAGG 57.744 55.000 0.00 0.00 0.00 3.18
563 573 1.722851 AGTGGGAGGAAAGGAGTAGGA 59.277 52.381 0.00 0.00 0.00 2.94
564 574 2.319438 AGTGGGAGGAAAGGAGTAGGAT 59.681 50.000 0.00 0.00 0.00 3.24
565 575 2.701423 GTGGGAGGAAAGGAGTAGGATC 59.299 54.545 0.00 0.00 0.00 3.36
566 576 2.331166 GGGAGGAAAGGAGTAGGATCC 58.669 57.143 2.48 2.48 39.89 3.36
567 577 1.964933 GGAGGAAAGGAGTAGGATCCG 59.035 57.143 5.98 0.00 44.65 4.18
568 578 1.341852 GAGGAAAGGAGTAGGATCCGC 59.658 57.143 5.98 3.52 44.65 5.54
569 579 1.120530 GGAAAGGAGTAGGATCCGCA 58.879 55.000 5.98 0.00 44.65 5.69
570 580 1.694696 GGAAAGGAGTAGGATCCGCAT 59.305 52.381 5.98 0.00 44.65 4.73
571 581 2.289133 GGAAAGGAGTAGGATCCGCATC 60.289 54.545 5.98 5.37 44.65 3.91
590 600 4.794439 GCGGGTTGCGCATTTCCC 62.794 66.667 25.91 25.91 36.82 3.97
591 601 3.061848 CGGGTTGCGCATTTCCCT 61.062 61.111 29.60 0.00 37.92 4.20
592 602 2.573340 GGGTTGCGCATTTCCCTG 59.427 61.111 27.41 0.00 37.18 4.45
593 603 2.275380 GGGTTGCGCATTTCCCTGT 61.275 57.895 27.41 0.00 37.18 4.00
594 604 1.212751 GGTTGCGCATTTCCCTGTC 59.787 57.895 12.75 0.00 0.00 3.51
595 605 1.154225 GTTGCGCATTTCCCTGTCG 60.154 57.895 12.75 0.00 0.00 4.35
596 606 1.599518 TTGCGCATTTCCCTGTCGT 60.600 52.632 12.75 0.00 0.00 4.34
597 607 1.573829 TTGCGCATTTCCCTGTCGTC 61.574 55.000 12.75 0.00 0.00 4.20
598 608 1.741770 GCGCATTTCCCTGTCGTCT 60.742 57.895 0.30 0.00 0.00 4.18
599 609 1.696832 GCGCATTTCCCTGTCGTCTC 61.697 60.000 0.30 0.00 0.00 3.36
600 610 1.084370 CGCATTTCCCTGTCGTCTCC 61.084 60.000 0.00 0.00 0.00 3.71
601 611 0.250513 GCATTTCCCTGTCGTCTCCT 59.749 55.000 0.00 0.00 0.00 3.69
602 612 1.740718 GCATTTCCCTGTCGTCTCCTC 60.741 57.143 0.00 0.00 0.00 3.71
603 613 1.550524 CATTTCCCTGTCGTCTCCTCA 59.449 52.381 0.00 0.00 0.00 3.86
604 614 1.938585 TTTCCCTGTCGTCTCCTCAT 58.061 50.000 0.00 0.00 0.00 2.90
605 615 1.186200 TTCCCTGTCGTCTCCTCATG 58.814 55.000 0.00 0.00 0.00 3.07
606 616 1.142748 CCCTGTCGTCTCCTCATGC 59.857 63.158 0.00 0.00 0.00 4.06
607 617 1.226802 CCTGTCGTCTCCTCATGCG 60.227 63.158 0.00 0.00 0.00 4.73
608 618 1.508545 CTGTCGTCTCCTCATGCGT 59.491 57.895 0.00 0.00 0.00 5.24
609 619 0.109086 CTGTCGTCTCCTCATGCGTT 60.109 55.000 0.00 0.00 0.00 4.84
610 620 0.109272 TGTCGTCTCCTCATGCGTTC 60.109 55.000 0.00 0.00 0.00 3.95
611 621 0.802607 GTCGTCTCCTCATGCGTTCC 60.803 60.000 0.00 0.00 0.00 3.62
612 622 1.215382 CGTCTCCTCATGCGTTCCA 59.785 57.895 0.00 0.00 0.00 3.53
613 623 0.389817 CGTCTCCTCATGCGTTCCAA 60.390 55.000 0.00 0.00 0.00 3.53
614 624 1.363744 GTCTCCTCATGCGTTCCAAG 58.636 55.000 0.00 0.00 0.00 3.61
615 625 0.250234 TCTCCTCATGCGTTCCAAGG 59.750 55.000 0.00 0.00 0.00 3.61
616 626 0.250234 CTCCTCATGCGTTCCAAGGA 59.750 55.000 0.00 0.00 34.97 3.36
617 627 0.690192 TCCTCATGCGTTCCAAGGAA 59.310 50.000 0.00 0.00 33.27 3.36
618 628 1.073125 TCCTCATGCGTTCCAAGGAAA 59.927 47.619 2.55 0.00 35.75 3.13
619 629 2.094675 CCTCATGCGTTCCAAGGAAAT 58.905 47.619 2.55 0.00 35.75 2.17
620 630 2.493278 CCTCATGCGTTCCAAGGAAATT 59.507 45.455 2.55 0.00 35.75 1.82
621 631 3.504863 CTCATGCGTTCCAAGGAAATTG 58.495 45.455 2.55 0.00 38.74 2.32
622 632 1.994779 CATGCGTTCCAAGGAAATTGC 59.005 47.619 2.55 8.74 37.60 3.56
623 633 0.316841 TGCGTTCCAAGGAAATTGCC 59.683 50.000 15.17 0.00 37.60 4.52
624 634 0.316841 GCGTTCCAAGGAAATTGCCA 59.683 50.000 4.92 0.00 37.60 4.92
625 635 1.066929 GCGTTCCAAGGAAATTGCCAT 60.067 47.619 4.92 0.00 37.60 4.40
626 636 2.879826 CGTTCCAAGGAAATTGCCATC 58.120 47.619 4.92 0.00 37.60 3.51
627 637 2.731968 CGTTCCAAGGAAATTGCCATCG 60.732 50.000 4.92 0.00 37.60 3.84
628 638 1.473258 TCCAAGGAAATTGCCATCGG 58.527 50.000 4.92 1.68 37.60 4.18
639 649 3.221389 CCATCGGCAAGCCCCATG 61.221 66.667 5.34 7.96 0.00 3.66
640 650 2.440796 CATCGGCAAGCCCCATGT 60.441 61.111 5.34 0.00 0.00 3.21
641 651 2.440796 ATCGGCAAGCCCCATGTG 60.441 61.111 5.34 0.00 0.00 3.21
642 652 3.286694 ATCGGCAAGCCCCATGTGT 62.287 57.895 5.34 0.00 0.00 3.72
643 653 2.786512 ATCGGCAAGCCCCATGTGTT 62.787 55.000 5.34 0.00 0.00 3.32
644 654 2.658422 GGCAAGCCCCATGTGTTG 59.342 61.111 0.00 0.00 0.00 3.33
645 655 1.907807 GGCAAGCCCCATGTGTTGA 60.908 57.895 0.00 0.00 0.00 3.18
646 656 1.588082 GCAAGCCCCATGTGTTGAG 59.412 57.895 0.00 0.00 0.00 3.02
647 657 1.588082 CAAGCCCCATGTGTTGAGC 59.412 57.895 0.00 0.00 0.00 4.26
648 658 0.896940 CAAGCCCCATGTGTTGAGCT 60.897 55.000 0.00 0.00 36.62 4.09
649 659 0.698238 AAGCCCCATGTGTTGAGCTA 59.302 50.000 0.00 0.00 34.74 3.32
650 660 0.254178 AGCCCCATGTGTTGAGCTAG 59.746 55.000 0.00 0.00 34.26 3.42
651 661 1.379642 GCCCCATGTGTTGAGCTAGC 61.380 60.000 6.62 6.62 0.00 3.42
652 662 0.749454 CCCCATGTGTTGAGCTAGCC 60.749 60.000 12.13 3.49 0.00 3.93
653 663 1.091771 CCCATGTGTTGAGCTAGCCG 61.092 60.000 12.13 0.00 0.00 5.52
654 664 0.391661 CCATGTGTTGAGCTAGCCGT 60.392 55.000 12.13 0.00 0.00 5.68
655 665 1.002366 CATGTGTTGAGCTAGCCGTC 58.998 55.000 12.13 3.81 0.00 4.79
656 666 0.898320 ATGTGTTGAGCTAGCCGTCT 59.102 50.000 12.13 0.00 0.00 4.18
657 667 0.038251 TGTGTTGAGCTAGCCGTCTG 60.038 55.000 12.13 0.00 0.00 3.51
658 668 0.737715 GTGTTGAGCTAGCCGTCTGG 60.738 60.000 12.13 0.00 38.77 3.86
659 669 1.185618 TGTTGAGCTAGCCGTCTGGT 61.186 55.000 12.13 0.00 37.67 4.00
660 670 0.037232 GTTGAGCTAGCCGTCTGGTT 60.037 55.000 12.13 0.00 37.67 3.67
661 671 0.246635 TTGAGCTAGCCGTCTGGTTC 59.753 55.000 12.13 0.00 37.67 3.62
662 672 1.142097 GAGCTAGCCGTCTGGTTCC 59.858 63.158 12.13 0.00 37.67 3.62
663 673 1.605058 GAGCTAGCCGTCTGGTTCCA 61.605 60.000 12.13 0.00 37.67 3.53
664 674 0.978146 AGCTAGCCGTCTGGTTCCAT 60.978 55.000 12.13 0.00 37.67 3.41
665 675 0.750850 GCTAGCCGTCTGGTTCCATA 59.249 55.000 2.29 0.00 37.67 2.74
666 676 1.269831 GCTAGCCGTCTGGTTCCATAG 60.270 57.143 2.29 0.00 37.67 2.23
667 677 2.307768 CTAGCCGTCTGGTTCCATAGA 58.692 52.381 0.00 0.00 37.67 1.98
668 678 1.115467 AGCCGTCTGGTTCCATAGAG 58.885 55.000 0.00 0.00 37.67 2.43
669 679 0.105039 GCCGTCTGGTTCCATAGAGG 59.895 60.000 0.00 0.00 37.67 3.69
670 680 2.301839 GCCGTCTGGTTCCATAGAGGA 61.302 57.143 0.00 0.00 40.39 3.71
671 681 4.170136 GCCGTCTGGTTCCATAGAGGAG 62.170 59.091 0.00 0.00 41.39 3.69
678 688 3.730116 TCCATAGAGGAGGCCAACA 57.270 52.632 5.01 0.00 43.07 3.33
679 689 1.500474 TCCATAGAGGAGGCCAACAG 58.500 55.000 5.01 0.00 43.07 3.16
680 690 1.207791 CCATAGAGGAGGCCAACAGT 58.792 55.000 5.01 0.00 41.22 3.55
681 691 1.139853 CCATAGAGGAGGCCAACAGTC 59.860 57.143 5.01 0.00 41.22 3.51
682 692 1.115467 ATAGAGGAGGCCAACAGTCG 58.885 55.000 5.01 0.00 0.00 4.18
683 693 0.039180 TAGAGGAGGCCAACAGTCGA 59.961 55.000 5.01 0.00 0.00 4.20
684 694 0.616111 AGAGGAGGCCAACAGTCGAT 60.616 55.000 5.01 0.00 0.00 3.59
685 695 0.460987 GAGGAGGCCAACAGTCGATG 60.461 60.000 5.01 0.00 0.00 3.84
686 696 1.194781 AGGAGGCCAACAGTCGATGT 61.195 55.000 5.01 0.00 46.97 3.06
687 697 1.021390 GGAGGCCAACAGTCGATGTG 61.021 60.000 5.01 0.00 43.00 3.21
688 698 1.003355 AGGCCAACAGTCGATGTGG 60.003 57.895 5.01 0.00 43.00 4.17
690 700 3.578456 CCAACAGTCGATGTGGGC 58.422 61.111 8.03 0.00 46.28 5.36
691 701 2.390599 CCAACAGTCGATGTGGGCG 61.391 63.158 8.03 0.00 46.28 6.13
692 702 1.667830 CAACAGTCGATGTGGGCGT 60.668 57.895 0.00 0.00 43.00 5.68
693 703 1.667830 AACAGTCGATGTGGGCGTG 60.668 57.895 0.00 0.00 43.00 5.34
694 704 3.490759 CAGTCGATGTGGGCGTGC 61.491 66.667 0.00 0.00 0.00 5.34
695 705 3.695606 AGTCGATGTGGGCGTGCT 61.696 61.111 0.00 0.00 0.00 4.40
696 706 3.188786 GTCGATGTGGGCGTGCTC 61.189 66.667 0.00 0.00 0.00 4.26
697 707 3.381983 TCGATGTGGGCGTGCTCT 61.382 61.111 0.00 0.00 0.00 4.09
698 708 2.049767 TCGATGTGGGCGTGCTCTA 61.050 57.895 0.00 0.00 0.00 2.43
699 709 1.589993 CGATGTGGGCGTGCTCTAG 60.590 63.158 0.00 0.00 0.00 2.43
700 710 1.884926 GATGTGGGCGTGCTCTAGC 60.885 63.158 0.00 0.00 42.50 3.42
841 851 3.871485 CTCTTAAGCTGAACTGATGCCT 58.129 45.455 0.00 0.00 0.00 4.75
848 858 4.789807 AGCTGAACTGATGCCTTCATTAT 58.210 39.130 0.00 0.00 32.72 1.28
861 871 4.829492 GCCTTCATTATCTGTTATGGGCTT 59.171 41.667 0.00 0.00 33.87 4.35
978 1016 1.362584 CCCCTTTCCCCATTCTTCCTT 59.637 52.381 0.00 0.00 0.00 3.36
983 1021 4.840680 CCTTTCCCCATTCTTCCTTTTCTT 59.159 41.667 0.00 0.00 0.00 2.52
1005 1057 0.102120 GCGAGCTAGTGCAGATGTCT 59.898 55.000 0.00 0.00 42.74 3.41
1058 1110 1.337384 TATGGTCCAGTGCCGCTCAT 61.337 55.000 0.00 0.00 0.00 2.90
1243 1473 5.124457 GCTGTTTGCTCTGATTTCTCCATAA 59.876 40.000 0.00 0.00 38.95 1.90
1294 1569 5.413309 AGGGTTCATGTTGTTGTTTTCAA 57.587 34.783 0.00 0.00 37.48 2.69
1367 1685 3.695830 TTCAGTTCGAGGGCTACATTT 57.304 42.857 0.00 0.00 0.00 2.32
1544 1863 4.180057 CGAGGAACTGAAGAAGATCAAGG 58.820 47.826 0.00 0.00 41.55 3.61
1548 1867 6.237154 AGGAACTGAAGAAGATCAAGGAAAG 58.763 40.000 0.00 0.00 37.18 2.62
1556 1875 7.503566 TGAAGAAGATCAAGGAAAGTCAAATGT 59.496 33.333 0.00 0.00 0.00 2.71
1557 1876 7.830099 AGAAGATCAAGGAAAGTCAAATGTT 57.170 32.000 0.00 0.00 0.00 2.71
1678 2001 2.509964 AGGGGCCATTTAGGTCTGTTAG 59.490 50.000 4.39 0.00 43.45 2.34
1796 2123 1.047801 GAGTGCACACCCCCAAATTT 58.952 50.000 21.04 0.00 0.00 1.82
1841 2172 1.507141 CCGAATAGATGTTGGGCCGC 61.507 60.000 0.00 0.00 0.00 6.53
1843 2174 1.507141 GAATAGATGTTGGGCCGCGG 61.507 60.000 24.05 24.05 0.00 6.46
1872 2204 2.304761 ACGAGGCCCAAATAGAGACAAA 59.695 45.455 0.00 0.00 0.00 2.83
1887 2219 3.243816 AAACCCACCCGCGTAGGT 61.244 61.111 4.92 2.60 42.40 3.08
1974 2309 7.681939 ACTCGAAATAAAATGTTGCTTAGGA 57.318 32.000 0.00 0.00 0.00 2.94
2029 2441 0.031994 ATTTGTTGCTTGTCCACGGC 59.968 50.000 0.00 0.00 0.00 5.68
2087 2642 8.189119 ACCAATATTTTTAGGAGCACAGAAAA 57.811 30.769 0.00 0.00 0.00 2.29
2114 2669 9.768662 ATTTCTTTTGTGCATTTGAGTTAATCT 57.231 25.926 0.00 0.00 0.00 2.40
2293 2912 3.079578 GCCTAGATACATGCATGCACAT 58.920 45.455 25.37 16.46 0.00 3.21
2331 3114 5.423610 AGATATGAAATAGGGACCCGATCAG 59.576 44.000 6.59 0.00 28.50 2.90
2523 3366 6.367695 TCATAGTTCAACCTAACACGACAATG 59.632 38.462 0.00 0.00 0.00 2.82
2556 3425 2.019897 AACACCACCTGCTTGCTTGC 62.020 55.000 0.00 0.00 0.00 4.01
2557 3426 2.196776 ACCACCTGCTTGCTTGCT 59.803 55.556 3.47 0.00 0.00 3.91
2558 3427 1.456331 ACCACCTGCTTGCTTGCTT 60.456 52.632 3.47 0.00 0.00 3.91
2559 3428 1.006571 CCACCTGCTTGCTTGCTTG 60.007 57.895 3.47 0.00 0.00 4.01
2560 3429 1.663702 CACCTGCTTGCTTGCTTGC 60.664 57.895 3.47 0.00 0.00 4.01
2561 3430 1.831286 ACCTGCTTGCTTGCTTGCT 60.831 52.632 10.35 0.00 0.00 3.91
2562 3431 1.366366 CCTGCTTGCTTGCTTGCTT 59.634 52.632 10.35 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.078426 CCGAAAAGCCATCTCCGGT 60.078 57.895 0.00 0.00 33.02 5.28
29 30 0.678048 GAGGTGCCGAAAAGCCATCT 60.678 55.000 0.00 0.00 0.00 2.90
64 68 3.576356 GACATGGCATCCGCACCG 61.576 66.667 0.00 0.00 41.24 4.94
100 110 1.151668 GCATTACCGCATCAGGCTAG 58.848 55.000 0.00 0.00 41.67 3.42
114 124 1.688735 CTGGATCTCAGTCCCGCATTA 59.311 52.381 0.00 0.00 38.64 1.90
134 144 8.758633 ATCAAACACTACGGCTCAATATATAC 57.241 34.615 0.00 0.00 0.00 1.47
135 145 9.772973 AAATCAAACACTACGGCTCAATATATA 57.227 29.630 0.00 0.00 0.00 0.86
136 146 8.559536 CAAATCAAACACTACGGCTCAATATAT 58.440 33.333 0.00 0.00 0.00 0.86
137 147 7.011950 CCAAATCAAACACTACGGCTCAATATA 59.988 37.037 0.00 0.00 0.00 0.86
138 148 6.183360 CCAAATCAAACACTACGGCTCAATAT 60.183 38.462 0.00 0.00 0.00 1.28
139 149 5.123186 CCAAATCAAACACTACGGCTCAATA 59.877 40.000 0.00 0.00 0.00 1.90
140 150 4.082787 CCAAATCAAACACTACGGCTCAAT 60.083 41.667 0.00 0.00 0.00 2.57
141 151 3.252215 CCAAATCAAACACTACGGCTCAA 59.748 43.478 0.00 0.00 0.00 3.02
142 152 2.811431 CCAAATCAAACACTACGGCTCA 59.189 45.455 0.00 0.00 0.00 4.26
143 153 2.161609 CCCAAATCAAACACTACGGCTC 59.838 50.000 0.00 0.00 0.00 4.70
144 154 2.159382 CCCAAATCAAACACTACGGCT 58.841 47.619 0.00 0.00 0.00 5.52
145 155 1.883926 ACCCAAATCAAACACTACGGC 59.116 47.619 0.00 0.00 0.00 5.68
146 156 2.351350 GCACCCAAATCAAACACTACGG 60.351 50.000 0.00 0.00 0.00 4.02
147 157 2.664424 CGCACCCAAATCAAACACTACG 60.664 50.000 0.00 0.00 0.00 3.51
148 158 2.920647 GCGCACCCAAATCAAACACTAC 60.921 50.000 0.30 0.00 0.00 2.73
149 159 1.268352 GCGCACCCAAATCAAACACTA 59.732 47.619 0.30 0.00 0.00 2.74
150 160 0.031994 GCGCACCCAAATCAAACACT 59.968 50.000 0.30 0.00 0.00 3.55
151 161 0.943835 GGCGCACCCAAATCAAACAC 60.944 55.000 10.83 0.00 0.00 3.32
152 162 1.365633 GGCGCACCCAAATCAAACA 59.634 52.632 10.83 0.00 0.00 2.83
153 163 1.365633 TGGCGCACCCAAATCAAAC 59.634 52.632 10.83 0.00 41.82 2.93
154 164 3.862142 TGGCGCACCCAAATCAAA 58.138 50.000 10.83 0.00 41.82 2.69
168 178 4.285149 CTATCGCGCGCTGTTGGC 62.285 66.667 30.48 0.00 37.64 4.52
169 179 1.951130 ATCTATCGCGCGCTGTTGG 60.951 57.895 30.48 18.07 0.00 3.77
170 180 1.200103 CATCTATCGCGCGCTGTTG 59.800 57.895 30.48 17.47 0.00 3.33
171 181 1.951130 CCATCTATCGCGCGCTGTT 60.951 57.895 30.48 18.72 0.00 3.16
172 182 1.792118 TACCATCTATCGCGCGCTGT 61.792 55.000 30.48 19.44 0.00 4.40
173 183 1.067743 CTACCATCTATCGCGCGCTG 61.068 60.000 30.48 22.06 0.00 5.18
174 184 1.210413 CTACCATCTATCGCGCGCT 59.790 57.895 30.48 19.99 0.00 5.92
175 185 2.437343 GCTACCATCTATCGCGCGC 61.437 63.158 27.95 23.91 0.00 6.86
176 186 2.146519 CGCTACCATCTATCGCGCG 61.147 63.158 26.76 26.76 37.29 6.86
177 187 0.386858 TTCGCTACCATCTATCGCGC 60.387 55.000 0.00 0.00 43.14 6.86
178 188 2.159503 AGATTCGCTACCATCTATCGCG 60.160 50.000 0.00 0.00 44.63 5.87
179 189 3.495670 AGATTCGCTACCATCTATCGC 57.504 47.619 0.00 0.00 0.00 4.58
180 190 5.092105 CAGAAGATTCGCTACCATCTATCG 58.908 45.833 0.00 0.00 0.00 2.92
181 191 4.862018 GCAGAAGATTCGCTACCATCTATC 59.138 45.833 3.31 0.00 0.00 2.08
182 192 4.281941 TGCAGAAGATTCGCTACCATCTAT 59.718 41.667 9.57 0.00 0.00 1.98
183 193 3.636764 TGCAGAAGATTCGCTACCATCTA 59.363 43.478 9.57 0.00 0.00 1.98
184 194 2.432146 TGCAGAAGATTCGCTACCATCT 59.568 45.455 9.57 0.00 0.00 2.90
185 195 2.799412 CTGCAGAAGATTCGCTACCATC 59.201 50.000 8.42 0.00 0.00 3.51
186 196 2.169352 ACTGCAGAAGATTCGCTACCAT 59.831 45.455 23.35 0.00 0.00 3.55
187 197 1.550524 ACTGCAGAAGATTCGCTACCA 59.449 47.619 23.35 0.00 0.00 3.25
188 198 2.301577 ACTGCAGAAGATTCGCTACC 57.698 50.000 23.35 0.00 0.00 3.18
189 199 4.031878 GTGTAACTGCAGAAGATTCGCTAC 59.968 45.833 23.35 7.53 0.00 3.58
190 200 4.174009 GTGTAACTGCAGAAGATTCGCTA 58.826 43.478 23.35 0.00 0.00 4.26
191 201 2.996621 GTGTAACTGCAGAAGATTCGCT 59.003 45.455 23.35 0.00 0.00 4.93
192 202 3.375911 GTGTAACTGCAGAAGATTCGC 57.624 47.619 23.35 7.23 0.00 4.70
206 216 6.672357 GCGATCATTGGTAGAAACAGTGTAAC 60.672 42.308 0.00 0.00 0.00 2.50
207 217 5.350365 GCGATCATTGGTAGAAACAGTGTAA 59.650 40.000 0.00 0.00 0.00 2.41
208 218 4.868171 GCGATCATTGGTAGAAACAGTGTA 59.132 41.667 0.00 0.00 0.00 2.90
209 219 3.684788 GCGATCATTGGTAGAAACAGTGT 59.315 43.478 0.00 0.00 0.00 3.55
210 220 3.935203 AGCGATCATTGGTAGAAACAGTG 59.065 43.478 0.00 0.00 0.00 3.66
211 221 4.184629 GAGCGATCATTGGTAGAAACAGT 58.815 43.478 0.00 0.00 0.00 3.55
212 222 4.183865 TGAGCGATCATTGGTAGAAACAG 58.816 43.478 0.00 0.00 0.00 3.16
213 223 4.200838 TGAGCGATCATTGGTAGAAACA 57.799 40.909 0.00 0.00 0.00 2.83
214 224 5.122396 AGTTTGAGCGATCATTGGTAGAAAC 59.878 40.000 3.25 3.19 0.00 2.78
215 225 5.122239 CAGTTTGAGCGATCATTGGTAGAAA 59.878 40.000 3.25 0.00 0.00 2.52
216 226 4.631377 CAGTTTGAGCGATCATTGGTAGAA 59.369 41.667 3.25 0.00 0.00 2.10
217 227 4.183865 CAGTTTGAGCGATCATTGGTAGA 58.816 43.478 3.25 0.00 0.00 2.59
218 228 3.242543 GCAGTTTGAGCGATCATTGGTAG 60.243 47.826 3.25 0.00 0.00 3.18
219 229 2.677836 GCAGTTTGAGCGATCATTGGTA 59.322 45.455 3.25 0.00 0.00 3.25
220 230 1.470098 GCAGTTTGAGCGATCATTGGT 59.530 47.619 3.25 0.00 0.00 3.67
221 231 2.184385 GCAGTTTGAGCGATCATTGG 57.816 50.000 3.25 0.00 0.00 3.16
230 240 4.090057 GGCGACCGCAGTTTGAGC 62.090 66.667 16.47 0.00 44.11 4.26
231 241 3.777925 CGGCGACCGCAGTTTGAG 61.778 66.667 16.47 0.00 41.17 3.02
241 251 0.389948 CCTATAATCCAGCGGCGACC 60.390 60.000 12.98 0.00 0.00 4.79
242 252 1.014564 GCCTATAATCCAGCGGCGAC 61.015 60.000 12.98 1.23 0.00 5.19
243 253 1.292223 GCCTATAATCCAGCGGCGA 59.708 57.895 12.98 0.00 0.00 5.54
244 254 3.876300 GCCTATAATCCAGCGGCG 58.124 61.111 0.51 0.51 0.00 6.46
245 255 3.876300 CGCCTATAATCCAGCGGC 58.124 61.111 0.00 0.00 44.64 6.53
248 258 1.002544 AGAAGGCGCCTATAATCCAGC 59.997 52.381 33.07 10.42 0.00 4.85
249 259 3.409026 AAGAAGGCGCCTATAATCCAG 57.591 47.619 33.07 0.00 0.00 3.86
250 260 3.901844 ACTAAGAAGGCGCCTATAATCCA 59.098 43.478 33.07 13.01 0.00 3.41
251 261 4.496360 GACTAAGAAGGCGCCTATAATCC 58.504 47.826 33.07 14.47 0.00 3.01
262 272 0.741221 CCACTGGCGACTAAGAAGGC 60.741 60.000 0.00 0.00 0.00 4.35
263 273 0.741221 GCCACTGGCGACTAAGAAGG 60.741 60.000 3.73 0.00 39.62 3.46
264 274 2.755929 GCCACTGGCGACTAAGAAG 58.244 57.895 3.73 0.00 39.62 2.85
274 284 4.043200 GGAAAGTGCGCCACTGGC 62.043 66.667 10.35 10.35 44.62 4.85
275 285 3.726517 CGGAAAGTGCGCCACTGG 61.727 66.667 4.18 0.00 44.62 4.00
276 286 2.058829 AAACGGAAAGTGCGCCACTG 62.059 55.000 4.18 0.00 44.62 3.66
278 288 0.526739 AAAAACGGAAAGTGCGCCAC 60.527 50.000 4.18 3.02 33.30 5.01
279 289 0.248702 GAAAAACGGAAAGTGCGCCA 60.249 50.000 4.18 0.00 33.30 5.69
280 290 0.030235 AGAAAAACGGAAAGTGCGCC 59.970 50.000 4.18 0.00 33.30 6.53
281 291 1.268335 TGAGAAAAACGGAAAGTGCGC 60.268 47.619 0.00 0.00 33.30 6.09
282 292 2.372350 GTGAGAAAAACGGAAAGTGCG 58.628 47.619 0.00 0.00 37.19 5.34
283 293 2.543031 GGGTGAGAAAAACGGAAAGTGC 60.543 50.000 0.00 0.00 0.00 4.40
284 294 2.286772 CGGGTGAGAAAAACGGAAAGTG 60.287 50.000 0.00 0.00 0.00 3.16
285 295 1.944709 CGGGTGAGAAAAACGGAAAGT 59.055 47.619 0.00 0.00 0.00 2.66
286 296 2.681152 CGGGTGAGAAAAACGGAAAG 57.319 50.000 0.00 0.00 0.00 2.62
290 300 2.951458 GCCGGGTGAGAAAAACGG 59.049 61.111 2.18 0.00 46.78 4.44
291 301 1.957186 TCGCCGGGTGAGAAAAACG 60.957 57.895 6.10 0.00 0.00 3.60
292 302 1.572941 GTCGCCGGGTGAGAAAAAC 59.427 57.895 11.25 0.00 0.00 2.43
293 303 1.957186 CGTCGCCGGGTGAGAAAAA 60.957 57.895 11.25 0.00 0.00 1.94
294 304 2.356553 CGTCGCCGGGTGAGAAAA 60.357 61.111 11.25 0.00 0.00 2.29
313 323 2.466520 AAAATTCCGACGGTTGCGCC 62.467 55.000 14.79 0.00 0.00 6.53
314 324 1.081708 AAAATTCCGACGGTTGCGC 60.082 52.632 14.79 0.00 0.00 6.09
315 325 1.334288 GCAAAATTCCGACGGTTGCG 61.334 55.000 20.00 5.56 35.69 4.85
316 326 0.318275 TGCAAAATTCCGACGGTTGC 60.318 50.000 25.07 25.07 43.79 4.17
317 327 1.404477 GTGCAAAATTCCGACGGTTG 58.596 50.000 14.79 11.93 0.00 3.77
318 328 0.040781 CGTGCAAAATTCCGACGGTT 60.041 50.000 14.79 0.00 0.00 4.44
319 329 0.881159 TCGTGCAAAATTCCGACGGT 60.881 50.000 14.79 0.00 0.00 4.83
320 330 0.236187 TTCGTGCAAAATTCCGACGG 59.764 50.000 7.84 7.84 0.00 4.79
321 331 2.159707 AGATTCGTGCAAAATTCCGACG 60.160 45.455 0.00 0.00 0.00 5.12
322 332 3.417185 GAGATTCGTGCAAAATTCCGAC 58.583 45.455 0.00 0.00 0.00 4.79
323 333 2.418628 GGAGATTCGTGCAAAATTCCGA 59.581 45.455 0.00 0.00 0.00 4.55
324 334 2.161410 TGGAGATTCGTGCAAAATTCCG 59.839 45.455 0.00 0.00 0.00 4.30
325 335 3.191371 AGTGGAGATTCGTGCAAAATTCC 59.809 43.478 0.00 3.17 0.00 3.01
326 336 4.083324 TGAGTGGAGATTCGTGCAAAATTC 60.083 41.667 0.00 0.00 0.00 2.17
327 337 3.820467 TGAGTGGAGATTCGTGCAAAATT 59.180 39.130 0.00 0.00 0.00 1.82
328 338 3.189287 GTGAGTGGAGATTCGTGCAAAAT 59.811 43.478 0.00 0.00 0.00 1.82
329 339 2.548057 GTGAGTGGAGATTCGTGCAAAA 59.452 45.455 0.00 0.00 0.00 2.44
330 340 2.143122 GTGAGTGGAGATTCGTGCAAA 58.857 47.619 0.00 0.00 0.00 3.68
331 341 1.795768 GTGAGTGGAGATTCGTGCAA 58.204 50.000 0.00 0.00 0.00 4.08
332 342 0.388520 CGTGAGTGGAGATTCGTGCA 60.389 55.000 0.00 0.00 0.00 4.57
333 343 1.687494 GCGTGAGTGGAGATTCGTGC 61.687 60.000 0.00 0.00 0.00 5.34
334 344 0.388520 TGCGTGAGTGGAGATTCGTG 60.389 55.000 0.00 0.00 0.00 4.35
335 345 0.388649 GTGCGTGAGTGGAGATTCGT 60.389 55.000 0.00 0.00 0.00 3.85
336 346 0.388520 TGTGCGTGAGTGGAGATTCG 60.389 55.000 0.00 0.00 0.00 3.34
337 347 1.795768 TTGTGCGTGAGTGGAGATTC 58.204 50.000 0.00 0.00 0.00 2.52
338 348 2.079158 CATTGTGCGTGAGTGGAGATT 58.921 47.619 0.00 0.00 0.00 2.40
339 349 1.276138 TCATTGTGCGTGAGTGGAGAT 59.724 47.619 0.00 0.00 0.00 2.75
340 350 0.678950 TCATTGTGCGTGAGTGGAGA 59.321 50.000 0.00 0.00 0.00 3.71
341 351 1.730501 ATCATTGTGCGTGAGTGGAG 58.269 50.000 0.00 0.00 0.00 3.86
342 352 1.805943 CAATCATTGTGCGTGAGTGGA 59.194 47.619 0.00 0.00 37.85 4.02
343 353 1.536766 ACAATCATTGTGCGTGAGTGG 59.463 47.619 0.98 0.00 43.69 4.00
344 354 2.975410 ACAATCATTGTGCGTGAGTG 57.025 45.000 0.98 2.49 44.61 3.51
345 355 3.542712 GAACAATCATTGTGCGTGAGT 57.457 42.857 3.07 0.00 44.59 3.41
351 361 1.470098 AGGAGCGAACAATCATTGTGC 59.530 47.619 3.07 0.00 44.59 4.57
352 362 3.837213 AAGGAGCGAACAATCATTGTG 57.163 42.857 3.07 0.00 44.59 3.33
354 364 4.168760 GGAAAAGGAGCGAACAATCATTG 58.831 43.478 0.00 0.00 0.00 2.82
355 365 3.119849 CGGAAAAGGAGCGAACAATCATT 60.120 43.478 0.00 0.00 0.00 2.57
356 366 2.420022 CGGAAAAGGAGCGAACAATCAT 59.580 45.455 0.00 0.00 0.00 2.45
357 367 1.804151 CGGAAAAGGAGCGAACAATCA 59.196 47.619 0.00 0.00 0.00 2.57
358 368 2.073816 TCGGAAAAGGAGCGAACAATC 58.926 47.619 0.00 0.00 0.00 2.67
359 369 2.178912 TCGGAAAAGGAGCGAACAAT 57.821 45.000 0.00 0.00 0.00 2.71
360 370 2.178912 ATCGGAAAAGGAGCGAACAA 57.821 45.000 0.00 0.00 0.00 2.83
361 371 2.073816 GAATCGGAAAAGGAGCGAACA 58.926 47.619 0.00 0.00 0.00 3.18
362 372 1.397343 GGAATCGGAAAAGGAGCGAAC 59.603 52.381 0.00 0.00 0.00 3.95
363 373 1.734163 GGAATCGGAAAAGGAGCGAA 58.266 50.000 0.00 0.00 0.00 4.70
364 374 0.459585 CGGAATCGGAAAAGGAGCGA 60.460 55.000 0.00 0.00 0.00 4.93
365 375 2.006772 CGGAATCGGAAAAGGAGCG 58.993 57.895 0.00 0.00 0.00 5.03
366 376 1.722082 GCGGAATCGGAAAAGGAGC 59.278 57.895 0.00 0.00 36.79 4.70
367 377 2.006772 CGCGGAATCGGAAAAGGAG 58.993 57.895 0.00 0.00 36.79 3.69
368 378 2.104253 GCGCGGAATCGGAAAAGGA 61.104 57.895 8.83 0.00 36.79 3.36
369 379 2.403586 GCGCGGAATCGGAAAAGG 59.596 61.111 8.83 0.00 36.79 3.11
370 380 1.962092 TTCGCGCGGAATCGGAAAAG 61.962 55.000 31.69 0.00 36.79 2.27
371 381 2.028179 TTCGCGCGGAATCGGAAAA 61.028 52.632 31.69 10.58 36.79 2.29
372 382 2.432800 TTCGCGCGGAATCGGAAA 60.433 55.556 31.69 11.41 36.79 3.13
373 383 3.183323 GTTCGCGCGGAATCGGAA 61.183 61.111 31.69 12.25 36.92 4.30
374 384 3.636313 AAGTTCGCGCGGAATCGGA 62.636 57.895 31.69 5.26 36.92 4.55
375 385 3.186047 AAGTTCGCGCGGAATCGG 61.186 61.111 31.69 0.00 36.92 4.18
376 386 2.020016 CAAGTTCGCGCGGAATCG 59.980 61.111 31.69 5.82 36.92 3.34
377 387 2.399611 CCAAGTTCGCGCGGAATC 59.600 61.111 31.69 10.80 36.92 2.52
378 388 3.799755 GCCAAGTTCGCGCGGAAT 61.800 61.111 31.69 20.14 36.92 3.01
379 389 4.980805 AGCCAAGTTCGCGCGGAA 62.981 61.111 31.69 19.54 0.00 4.30
380 390 4.980805 AAGCCAAGTTCGCGCGGA 62.981 61.111 31.69 21.45 0.00 5.54
381 391 4.025401 AAAGCCAAGTTCGCGCGG 62.025 61.111 31.69 13.92 0.00 6.46
382 392 2.796617 CAAAGCCAAGTTCGCGCG 60.797 61.111 26.76 26.76 0.00 6.86
383 393 2.429069 CCAAAGCCAAGTTCGCGC 60.429 61.111 0.00 0.00 0.00 6.86
384 394 1.207593 CTCCAAAGCCAAGTTCGCG 59.792 57.895 0.00 0.00 0.00 5.87
385 395 1.081175 GCTCCAAAGCCAAGTTCGC 60.081 57.895 0.00 0.00 43.10 4.70
395 405 2.225068 ATATCGTCACGGCTCCAAAG 57.775 50.000 0.00 0.00 0.00 2.77
396 406 3.610821 CGATATATCGTCACGGCTCCAAA 60.611 47.826 23.97 0.00 44.74 3.28
397 407 2.095415 CGATATATCGTCACGGCTCCAA 60.095 50.000 23.97 0.00 44.74 3.53
398 408 1.467342 CGATATATCGTCACGGCTCCA 59.533 52.381 23.97 0.00 44.74 3.86
399 409 2.175530 CGATATATCGTCACGGCTCC 57.824 55.000 23.97 0.00 44.74 4.70
410 420 3.880490 AGGAGCGGAGATGACGATATATC 59.120 47.826 2.34 2.34 0.00 1.63
411 421 3.892284 AGGAGCGGAGATGACGATATAT 58.108 45.455 0.00 0.00 0.00 0.86
412 422 3.351794 AGGAGCGGAGATGACGATATA 57.648 47.619 0.00 0.00 0.00 0.86
413 423 2.208132 AGGAGCGGAGATGACGATAT 57.792 50.000 0.00 0.00 0.00 1.63
414 424 1.880675 GAAGGAGCGGAGATGACGATA 59.119 52.381 0.00 0.00 0.00 2.92
415 425 0.671251 GAAGGAGCGGAGATGACGAT 59.329 55.000 0.00 0.00 0.00 3.73
416 426 0.394488 AGAAGGAGCGGAGATGACGA 60.394 55.000 0.00 0.00 0.00 4.20
417 427 1.265635 CTAGAAGGAGCGGAGATGACG 59.734 57.143 0.00 0.00 0.00 4.35
418 428 2.292292 GACTAGAAGGAGCGGAGATGAC 59.708 54.545 0.00 0.00 0.00 3.06
419 429 2.173782 AGACTAGAAGGAGCGGAGATGA 59.826 50.000 0.00 0.00 0.00 2.92
420 430 2.582052 AGACTAGAAGGAGCGGAGATG 58.418 52.381 0.00 0.00 0.00 2.90
421 431 3.117663 AGAAGACTAGAAGGAGCGGAGAT 60.118 47.826 0.00 0.00 0.00 2.75
422 432 2.240160 AGAAGACTAGAAGGAGCGGAGA 59.760 50.000 0.00 0.00 0.00 3.71
423 433 2.650322 AGAAGACTAGAAGGAGCGGAG 58.350 52.381 0.00 0.00 0.00 4.63
424 434 2.810870 AGAAGACTAGAAGGAGCGGA 57.189 50.000 0.00 0.00 0.00 5.54
434 444 6.263392 TCGAAATGGTGGATCTAGAAGACTAG 59.737 42.308 0.00 0.00 45.21 2.57
435 445 6.127101 TCGAAATGGTGGATCTAGAAGACTA 58.873 40.000 0.00 0.00 0.00 2.59
436 446 4.956700 TCGAAATGGTGGATCTAGAAGACT 59.043 41.667 0.00 0.00 0.00 3.24
437 447 5.263968 TCGAAATGGTGGATCTAGAAGAC 57.736 43.478 0.00 0.00 0.00 3.01
438 448 5.221521 CCATCGAAATGGTGGATCTAGAAGA 60.222 44.000 0.00 0.00 46.43 2.87
439 449 4.993584 CCATCGAAATGGTGGATCTAGAAG 59.006 45.833 0.00 0.00 46.43 2.85
440 450 4.960938 CCATCGAAATGGTGGATCTAGAA 58.039 43.478 0.00 0.00 46.43 2.10
441 451 4.607293 CCATCGAAATGGTGGATCTAGA 57.393 45.455 0.00 0.00 46.43 2.43
452 462 3.134458 GGAAGTAGAGCCCATCGAAATG 58.866 50.000 0.00 0.00 0.00 2.32
453 463 2.771943 TGGAAGTAGAGCCCATCGAAAT 59.228 45.455 0.00 0.00 0.00 2.17
454 464 2.184533 TGGAAGTAGAGCCCATCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
455 465 1.860641 TGGAAGTAGAGCCCATCGAA 58.139 50.000 0.00 0.00 0.00 3.71
456 466 2.088104 ATGGAAGTAGAGCCCATCGA 57.912 50.000 0.00 0.00 35.95 3.59
457 467 2.103094 TGAATGGAAGTAGAGCCCATCG 59.897 50.000 0.00 0.00 39.58 3.84
458 468 3.845781 TGAATGGAAGTAGAGCCCATC 57.154 47.619 0.00 0.00 39.58 3.51
459 469 4.079558 ACATTGAATGGAAGTAGAGCCCAT 60.080 41.667 10.27 0.00 42.08 4.00
460 470 3.266772 ACATTGAATGGAAGTAGAGCCCA 59.733 43.478 10.27 0.00 33.60 5.36
461 471 3.879892 GACATTGAATGGAAGTAGAGCCC 59.120 47.826 10.27 0.00 33.60 5.19
462 472 4.775236 AGACATTGAATGGAAGTAGAGCC 58.225 43.478 10.27 0.00 33.60 4.70
463 473 6.481644 CCTAAGACATTGAATGGAAGTAGAGC 59.518 42.308 10.27 0.00 33.60 4.09
464 474 7.786030 TCCTAAGACATTGAATGGAAGTAGAG 58.214 38.462 10.27 0.00 33.60 2.43
465 475 7.619698 TCTCCTAAGACATTGAATGGAAGTAGA 59.380 37.037 10.27 0.85 33.60 2.59
466 476 7.786030 TCTCCTAAGACATTGAATGGAAGTAG 58.214 38.462 10.27 5.52 33.60 2.57
467 477 7.733773 TCTCCTAAGACATTGAATGGAAGTA 57.266 36.000 10.27 0.00 33.60 2.24
468 478 6.627087 TCTCCTAAGACATTGAATGGAAGT 57.373 37.500 10.27 0.00 33.60 3.01
482 492 3.369471 CGGCAATTTGGAGTCTCCTAAGA 60.369 47.826 19.82 3.80 34.92 2.10
483 493 2.939103 CGGCAATTTGGAGTCTCCTAAG 59.061 50.000 19.82 8.82 34.92 2.18
484 494 2.939640 GCGGCAATTTGGAGTCTCCTAA 60.940 50.000 19.82 18.17 37.46 2.69
485 495 1.406887 GCGGCAATTTGGAGTCTCCTA 60.407 52.381 19.82 9.78 37.46 2.94
486 496 0.678048 GCGGCAATTTGGAGTCTCCT 60.678 55.000 19.82 0.00 37.46 3.69
487 497 1.657751 GGCGGCAATTTGGAGTCTCC 61.658 60.000 12.40 12.40 36.96 3.71
488 498 0.960364 TGGCGGCAATTTGGAGTCTC 60.960 55.000 10.22 0.00 0.00 3.36
489 499 0.962356 CTGGCGGCAATTTGGAGTCT 60.962 55.000 14.48 0.00 0.00 3.24
490 500 1.508088 CTGGCGGCAATTTGGAGTC 59.492 57.895 14.48 0.00 0.00 3.36
491 501 1.978617 CCTGGCGGCAATTTGGAGT 60.979 57.895 14.48 0.00 0.00 3.85
492 502 2.713967 CCCTGGCGGCAATTTGGAG 61.714 63.158 14.48 0.00 0.00 3.86
493 503 2.679642 CCCTGGCGGCAATTTGGA 60.680 61.111 14.48 0.00 0.00 3.53
494 504 2.679642 TCCCTGGCGGCAATTTGG 60.680 61.111 14.48 10.75 0.00 3.28
495 505 0.679640 TACTCCCTGGCGGCAATTTG 60.680 55.000 14.48 6.64 0.00 2.32
496 506 0.039035 TTACTCCCTGGCGGCAATTT 59.961 50.000 14.48 0.00 0.00 1.82
497 507 0.258774 ATTACTCCCTGGCGGCAATT 59.741 50.000 14.48 0.00 0.00 2.32
498 508 0.466189 CATTACTCCCTGGCGGCAAT 60.466 55.000 14.48 0.00 0.00 3.56
499 509 1.077787 CATTACTCCCTGGCGGCAA 60.078 57.895 14.48 0.00 0.00 4.52
500 510 2.589540 CATTACTCCCTGGCGGCA 59.410 61.111 12.58 12.58 0.00 5.69
501 511 2.203209 CCATTACTCCCTGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
505 515 0.179045 CCTTCGCCATTACTCCCTGG 60.179 60.000 0.00 0.00 35.53 4.45
506 516 0.179045 CCCTTCGCCATTACTCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
507 517 1.345715 CCCCTTCGCCATTACTCCCT 61.346 60.000 0.00 0.00 0.00 4.20
508 518 1.148498 CCCCTTCGCCATTACTCCC 59.852 63.158 0.00 0.00 0.00 4.30
509 519 1.526225 GCCCCTTCGCCATTACTCC 60.526 63.158 0.00 0.00 0.00 3.85
510 520 1.887707 CGCCCCTTCGCCATTACTC 60.888 63.158 0.00 0.00 0.00 2.59
511 521 2.189521 CGCCCCTTCGCCATTACT 59.810 61.111 0.00 0.00 0.00 2.24
512 522 2.124860 ACGCCCCTTCGCCATTAC 60.125 61.111 0.00 0.00 0.00 1.89
513 523 2.188469 GACGCCCCTTCGCCATTA 59.812 61.111 0.00 0.00 0.00 1.90
517 527 4.867599 CTACGACGCCCCTTCGCC 62.868 72.222 0.00 0.00 40.24 5.54
519 529 3.753070 GAGCTACGACGCCCCTTCG 62.753 68.421 0.00 0.00 42.36 3.79
520 530 2.104530 GAGCTACGACGCCCCTTC 59.895 66.667 0.00 0.00 0.00 3.46
521 531 3.823330 CGAGCTACGACGCCCCTT 61.823 66.667 0.00 0.00 45.77 3.95
522 532 4.790962 TCGAGCTACGACGCCCCT 62.791 66.667 0.00 0.00 46.45 4.79
523 533 4.253257 CTCGAGCTACGACGCCCC 62.253 72.222 0.00 0.00 46.45 5.80
524 534 1.226686 TATCTCGAGCTACGACGCCC 61.227 60.000 7.81 0.00 46.45 6.13
525 535 0.164217 CTATCTCGAGCTACGACGCC 59.836 60.000 7.81 0.00 46.45 5.68
526 536 0.860533 ACTATCTCGAGCTACGACGC 59.139 55.000 7.81 0.00 46.45 5.19
527 537 1.192757 CCACTATCTCGAGCTACGACG 59.807 57.143 7.81 0.00 46.45 5.12
528 538 1.532007 CCCACTATCTCGAGCTACGAC 59.468 57.143 7.81 0.00 46.45 4.34
530 540 1.801771 CTCCCACTATCTCGAGCTACG 59.198 57.143 7.81 0.00 44.09 3.51
531 541 2.156098 CCTCCCACTATCTCGAGCTAC 58.844 57.143 7.81 0.00 0.00 3.58
532 542 2.055579 TCCTCCCACTATCTCGAGCTA 58.944 52.381 7.81 0.85 0.00 3.32
533 543 0.847373 TCCTCCCACTATCTCGAGCT 59.153 55.000 7.81 0.00 0.00 4.09
534 544 1.693627 TTCCTCCCACTATCTCGAGC 58.306 55.000 7.81 0.00 0.00 5.03
535 545 2.625790 CCTTTCCTCCCACTATCTCGAG 59.374 54.545 5.93 5.93 0.00 4.04
536 546 2.243994 TCCTTTCCTCCCACTATCTCGA 59.756 50.000 0.00 0.00 0.00 4.04
537 547 2.625790 CTCCTTTCCTCCCACTATCTCG 59.374 54.545 0.00 0.00 0.00 4.04
538 548 3.648739 ACTCCTTTCCTCCCACTATCTC 58.351 50.000 0.00 0.00 0.00 2.75
539 549 3.786213 ACTCCTTTCCTCCCACTATCT 57.214 47.619 0.00 0.00 0.00 1.98
540 550 3.898741 CCTACTCCTTTCCTCCCACTATC 59.101 52.174 0.00 0.00 0.00 2.08
541 551 3.536434 TCCTACTCCTTTCCTCCCACTAT 59.464 47.826 0.00 0.00 0.00 2.12
542 552 2.931088 TCCTACTCCTTTCCTCCCACTA 59.069 50.000 0.00 0.00 0.00 2.74
543 553 1.722851 TCCTACTCCTTTCCTCCCACT 59.277 52.381 0.00 0.00 0.00 4.00
544 554 2.249309 TCCTACTCCTTTCCTCCCAC 57.751 55.000 0.00 0.00 0.00 4.61
545 555 2.360423 GGATCCTACTCCTTTCCTCCCA 60.360 54.545 3.84 0.00 32.18 4.37
546 556 2.331166 GGATCCTACTCCTTTCCTCCC 58.669 57.143 3.84 0.00 32.18 4.30
547 557 1.964933 CGGATCCTACTCCTTTCCTCC 59.035 57.143 10.75 0.00 32.77 4.30
548 558 1.341852 GCGGATCCTACTCCTTTCCTC 59.658 57.143 10.75 0.00 32.77 3.71
549 559 1.343075 TGCGGATCCTACTCCTTTCCT 60.343 52.381 10.75 0.00 32.77 3.36
550 560 1.120530 TGCGGATCCTACTCCTTTCC 58.879 55.000 10.75 0.00 32.77 3.13
551 561 2.289133 GGATGCGGATCCTACTCCTTTC 60.289 54.545 27.10 0.00 44.58 2.62
552 562 1.694696 GGATGCGGATCCTACTCCTTT 59.305 52.381 27.10 0.00 44.58 3.11
553 563 1.343069 GGATGCGGATCCTACTCCTT 58.657 55.000 27.10 0.00 44.58 3.36
554 564 0.896019 CGGATGCGGATCCTACTCCT 60.896 60.000 30.17 0.00 45.68 3.69
555 565 1.587054 CGGATGCGGATCCTACTCC 59.413 63.158 30.17 8.13 45.68 3.85
556 566 1.080434 GCGGATGCGGATCCTACTC 60.080 63.158 30.17 14.61 45.68 2.59
557 567 3.052081 GCGGATGCGGATCCTACT 58.948 61.111 30.17 0.00 45.68 2.57
574 584 3.061848 AGGGAAATGCGCAACCCG 61.062 61.111 30.56 0.00 46.13 5.28
575 585 2.212900 GACAGGGAAATGCGCAACCC 62.213 60.000 30.33 30.33 42.36 4.11
576 586 1.212751 GACAGGGAAATGCGCAACC 59.787 57.895 17.11 18.23 0.00 3.77
577 587 1.154225 CGACAGGGAAATGCGCAAC 60.154 57.895 17.11 9.26 0.00 4.17
578 588 1.573829 GACGACAGGGAAATGCGCAA 61.574 55.000 17.11 0.00 0.00 4.85
579 589 2.031919 ACGACAGGGAAATGCGCA 59.968 55.556 14.96 14.96 0.00 6.09
580 590 1.696832 GAGACGACAGGGAAATGCGC 61.697 60.000 0.00 0.00 0.00 6.09
581 591 1.084370 GGAGACGACAGGGAAATGCG 61.084 60.000 0.00 0.00 0.00 4.73
582 592 0.250513 AGGAGACGACAGGGAAATGC 59.749 55.000 0.00 0.00 0.00 3.56
583 593 1.550524 TGAGGAGACGACAGGGAAATG 59.449 52.381 0.00 0.00 0.00 2.32
584 594 1.938585 TGAGGAGACGACAGGGAAAT 58.061 50.000 0.00 0.00 0.00 2.17
585 595 1.550524 CATGAGGAGACGACAGGGAAA 59.449 52.381 0.00 0.00 0.00 3.13
586 596 1.186200 CATGAGGAGACGACAGGGAA 58.814 55.000 0.00 0.00 0.00 3.97
587 597 1.323271 GCATGAGGAGACGACAGGGA 61.323 60.000 0.00 0.00 0.00 4.20
588 598 1.142748 GCATGAGGAGACGACAGGG 59.857 63.158 0.00 0.00 0.00 4.45
589 599 1.226802 CGCATGAGGAGACGACAGG 60.227 63.158 0.00 0.00 0.00 4.00
590 600 0.109086 AACGCATGAGGAGACGACAG 60.109 55.000 0.00 0.00 0.00 3.51
591 601 0.109272 GAACGCATGAGGAGACGACA 60.109 55.000 0.00 0.00 0.00 4.35
592 602 0.802607 GGAACGCATGAGGAGACGAC 60.803 60.000 0.00 0.00 0.00 4.34
593 603 1.248101 TGGAACGCATGAGGAGACGA 61.248 55.000 0.00 0.00 0.00 4.20
594 604 0.389817 TTGGAACGCATGAGGAGACG 60.390 55.000 0.00 0.00 0.00 4.18
595 605 1.363744 CTTGGAACGCATGAGGAGAC 58.636 55.000 0.00 0.00 0.00 3.36
596 606 0.250234 CCTTGGAACGCATGAGGAGA 59.750 55.000 0.00 0.00 0.00 3.71
597 607 0.250234 TCCTTGGAACGCATGAGGAG 59.750 55.000 0.00 0.00 32.91 3.69
598 608 0.690192 TTCCTTGGAACGCATGAGGA 59.310 50.000 0.00 0.00 34.83 3.71
599 609 1.533625 TTTCCTTGGAACGCATGAGG 58.466 50.000 0.00 0.00 0.00 3.86
600 610 3.504863 CAATTTCCTTGGAACGCATGAG 58.495 45.455 0.00 0.00 0.00 2.90
601 611 2.352617 GCAATTTCCTTGGAACGCATGA 60.353 45.455 0.00 0.00 35.25 3.07
602 612 1.994779 GCAATTTCCTTGGAACGCATG 59.005 47.619 0.98 0.00 35.25 4.06
603 613 1.066929 GGCAATTTCCTTGGAACGCAT 60.067 47.619 15.16 1.20 35.25 4.73
604 614 0.316841 GGCAATTTCCTTGGAACGCA 59.683 50.000 15.16 0.00 35.25 5.24
605 615 0.316841 TGGCAATTTCCTTGGAACGC 59.683 50.000 0.98 5.52 35.25 4.84
606 616 2.731968 CGATGGCAATTTCCTTGGAACG 60.732 50.000 0.98 0.00 35.25 3.95
607 617 2.417243 CCGATGGCAATTTCCTTGGAAC 60.417 50.000 0.98 0.00 35.25 3.62
608 618 1.824230 CCGATGGCAATTTCCTTGGAA 59.176 47.619 0.00 0.00 35.25 3.53
609 619 1.473258 CCGATGGCAATTTCCTTGGA 58.527 50.000 0.00 0.00 35.25 3.53
622 632 3.221389 CATGGGGCTTGCCGATGG 61.221 66.667 5.49 0.00 0.00 3.51
623 633 2.440796 ACATGGGGCTTGCCGATG 60.441 61.111 16.12 16.12 0.00 3.84
624 634 2.440796 CACATGGGGCTTGCCGAT 60.441 61.111 5.49 0.00 0.00 4.18
625 635 3.505790 AACACATGGGGCTTGCCGA 62.506 57.895 0.00 0.00 0.00 5.54
626 636 2.990967 AACACATGGGGCTTGCCG 60.991 61.111 0.00 0.00 0.00 5.69
627 637 1.880819 CTCAACACATGGGGCTTGCC 61.881 60.000 0.00 2.49 0.00 4.52
628 638 1.588082 CTCAACACATGGGGCTTGC 59.412 57.895 0.00 0.00 0.00 4.01
629 639 0.896940 AGCTCAACACATGGGGCTTG 60.897 55.000 0.00 0.00 35.90 4.01
630 640 0.698238 TAGCTCAACACATGGGGCTT 59.302 50.000 0.00 0.00 38.63 4.35
631 641 0.254178 CTAGCTCAACACATGGGGCT 59.746 55.000 0.00 0.02 40.04 5.19
632 642 1.379642 GCTAGCTCAACACATGGGGC 61.380 60.000 7.70 0.00 0.00 5.80
633 643 0.749454 GGCTAGCTCAACACATGGGG 60.749 60.000 15.72 0.00 0.00 4.96
634 644 1.091771 CGGCTAGCTCAACACATGGG 61.092 60.000 15.72 0.00 0.00 4.00
635 645 0.391661 ACGGCTAGCTCAACACATGG 60.392 55.000 15.72 0.00 0.00 3.66
636 646 1.002366 GACGGCTAGCTCAACACATG 58.998 55.000 15.72 0.00 0.00 3.21
637 647 0.898320 AGACGGCTAGCTCAACACAT 59.102 50.000 15.72 0.00 0.00 3.21
638 648 0.038251 CAGACGGCTAGCTCAACACA 60.038 55.000 15.72 0.00 0.00 3.72
639 649 0.737715 CCAGACGGCTAGCTCAACAC 60.738 60.000 15.72 0.00 0.00 3.32
640 650 1.185618 ACCAGACGGCTAGCTCAACA 61.186 55.000 15.72 0.00 34.57 3.33
641 651 0.037232 AACCAGACGGCTAGCTCAAC 60.037 55.000 15.72 4.30 34.57 3.18
642 652 0.246635 GAACCAGACGGCTAGCTCAA 59.753 55.000 15.72 0.00 34.57 3.02
643 653 1.605058 GGAACCAGACGGCTAGCTCA 61.605 60.000 15.72 0.00 34.57 4.26
644 654 1.142097 GGAACCAGACGGCTAGCTC 59.858 63.158 15.72 5.17 34.57 4.09
645 655 0.978146 ATGGAACCAGACGGCTAGCT 60.978 55.000 15.72 0.00 34.57 3.32
646 656 0.750850 TATGGAACCAGACGGCTAGC 59.249 55.000 6.04 6.04 34.57 3.42
647 657 2.294791 CTCTATGGAACCAGACGGCTAG 59.705 54.545 0.00 0.00 34.57 3.42
648 658 2.307768 CTCTATGGAACCAGACGGCTA 58.692 52.381 0.00 0.00 34.57 3.93
649 659 1.115467 CTCTATGGAACCAGACGGCT 58.885 55.000 0.00 0.00 34.57 5.52
650 660 0.105039 CCTCTATGGAACCAGACGGC 59.895 60.000 0.00 0.00 38.35 5.68
651 661 1.683917 CTCCTCTATGGAACCAGACGG 59.316 57.143 0.00 0.00 45.63 4.79
652 662 1.683917 CCTCCTCTATGGAACCAGACG 59.316 57.143 0.00 0.00 45.63 4.18
653 663 1.414550 GCCTCCTCTATGGAACCAGAC 59.585 57.143 0.00 0.00 45.63 3.51
654 664 1.692762 GGCCTCCTCTATGGAACCAGA 60.693 57.143 0.00 0.00 45.63 3.86
655 665 0.761802 GGCCTCCTCTATGGAACCAG 59.238 60.000 0.00 0.00 45.63 4.00
656 666 0.044092 TGGCCTCCTCTATGGAACCA 59.956 55.000 3.32 0.00 45.63 3.67
657 667 1.134068 GTTGGCCTCCTCTATGGAACC 60.134 57.143 3.32 0.00 45.63 3.62
658 668 1.559682 TGTTGGCCTCCTCTATGGAAC 59.440 52.381 3.32 0.00 45.63 3.62
659 669 1.839994 CTGTTGGCCTCCTCTATGGAA 59.160 52.381 3.32 0.00 45.63 3.53
660 670 1.273838 ACTGTTGGCCTCCTCTATGGA 60.274 52.381 3.32 0.00 43.86 3.41
661 671 1.139853 GACTGTTGGCCTCCTCTATGG 59.860 57.143 3.32 0.00 37.10 2.74
662 672 1.202463 CGACTGTTGGCCTCCTCTATG 60.202 57.143 3.32 0.00 0.00 2.23
663 673 1.115467 CGACTGTTGGCCTCCTCTAT 58.885 55.000 3.32 0.00 0.00 1.98
664 674 0.039180 TCGACTGTTGGCCTCCTCTA 59.961 55.000 3.32 0.00 0.00 2.43
665 675 0.616111 ATCGACTGTTGGCCTCCTCT 60.616 55.000 3.32 0.00 0.00 3.69
666 676 0.460987 CATCGACTGTTGGCCTCCTC 60.461 60.000 3.32 0.00 0.00 3.71
667 677 1.194781 ACATCGACTGTTGGCCTCCT 61.195 55.000 3.32 0.00 32.90 3.69
668 678 1.021390 CACATCGACTGTTGGCCTCC 61.021 60.000 3.32 0.00 35.29 4.30
669 679 1.021390 CCACATCGACTGTTGGCCTC 61.021 60.000 3.32 0.00 35.29 4.70
670 680 1.003355 CCACATCGACTGTTGGCCT 60.003 57.895 3.32 0.00 35.29 5.19
671 681 2.040544 CCCACATCGACTGTTGGCC 61.041 63.158 0.00 0.00 34.19 5.36
672 682 3.578456 CCCACATCGACTGTTGGC 58.422 61.111 0.00 0.00 34.19 4.52
673 683 2.390599 CGCCCACATCGACTGTTGG 61.391 63.158 11.36 11.36 42.37 3.77
674 684 1.667830 ACGCCCACATCGACTGTTG 60.668 57.895 0.00 0.00 35.29 3.33
675 685 1.667830 CACGCCCACATCGACTGTT 60.668 57.895 0.00 0.00 35.29 3.16
676 686 2.048222 CACGCCCACATCGACTGT 60.048 61.111 0.00 0.00 39.20 3.55
677 687 3.490759 GCACGCCCACATCGACTG 61.491 66.667 0.00 0.00 0.00 3.51
678 688 3.649277 GAGCACGCCCACATCGACT 62.649 63.158 0.00 0.00 0.00 4.18
679 689 2.279502 TAGAGCACGCCCACATCGAC 62.280 60.000 0.00 0.00 0.00 4.20
680 690 2.004808 CTAGAGCACGCCCACATCGA 62.005 60.000 0.00 0.00 0.00 3.59
681 691 1.589993 CTAGAGCACGCCCACATCG 60.590 63.158 0.00 0.00 0.00 3.84
682 692 1.884926 GCTAGAGCACGCCCACATC 60.885 63.158 0.00 0.00 41.59 3.06
683 693 2.187946 GCTAGAGCACGCCCACAT 59.812 61.111 0.00 0.00 41.59 3.21
684 694 4.082523 GGCTAGAGCACGCCCACA 62.083 66.667 3.54 0.00 44.36 4.17
690 700 4.208686 GACCCCGGCTAGAGCACG 62.209 72.222 0.00 4.81 44.36 5.34
691 701 1.972660 ATTGACCCCGGCTAGAGCAC 61.973 60.000 0.00 0.00 44.36 4.40
692 702 0.397957 TATTGACCCCGGCTAGAGCA 60.398 55.000 0.00 0.00 44.36 4.26
693 703 0.318762 CTATTGACCCCGGCTAGAGC 59.681 60.000 0.00 0.00 41.14 4.09
694 704 0.318762 GCTATTGACCCCGGCTAGAG 59.681 60.000 0.00 0.00 0.00 2.43
695 705 0.105658 AGCTATTGACCCCGGCTAGA 60.106 55.000 0.00 0.00 0.00 2.43
696 706 0.318762 GAGCTATTGACCCCGGCTAG 59.681 60.000 0.00 0.00 33.13 3.42
697 707 1.119574 GGAGCTATTGACCCCGGCTA 61.120 60.000 0.00 0.00 33.13 3.93
698 708 2.444256 GGAGCTATTGACCCCGGCT 61.444 63.158 0.00 0.00 35.86 5.52
699 709 2.111251 GGAGCTATTGACCCCGGC 59.889 66.667 0.00 0.00 0.00 6.13
700 710 1.338136 ACAGGAGCTATTGACCCCGG 61.338 60.000 0.00 0.00 0.00 5.73
701 711 0.179073 CACAGGAGCTATTGACCCCG 60.179 60.000 4.09 0.00 0.00 5.73
771 781 0.744281 CAAAAGTGTCGCCCCAAAGT 59.256 50.000 0.00 0.00 0.00 2.66
821 831 3.988976 AGGCATCAGTTCAGCTTAAGA 57.011 42.857 6.67 0.00 0.00 2.10
841 851 5.827797 GGTCAAGCCCATAACAGATAATGAA 59.172 40.000 0.00 0.00 0.00 2.57
861 871 1.695242 ACGTGGATAAGTTGTGGGTCA 59.305 47.619 0.00 0.00 0.00 4.02
978 1016 0.736325 GCACTAGCTCGCCGAAGAAA 60.736 55.000 0.00 0.00 37.91 2.52
983 1021 2.121538 ATCTGCACTAGCTCGCCGA 61.122 57.895 0.00 0.00 42.74 5.54
1005 1057 2.118732 TGTGTGGCGGAGGAGGTA 59.881 61.111 0.00 0.00 0.00 3.08
1294 1569 5.733620 AATGTGTGCATTTCTTCAGGATT 57.266 34.783 0.00 0.00 42.19 3.01
1318 1612 6.100134 TCTCAACATAATCATCCATCCACTCA 59.900 38.462 0.00 0.00 0.00 3.41
1544 1863 8.581263 CAAATCGATCATCAACATTTGACTTTC 58.419 33.333 0.00 0.00 43.48 2.62
1548 1867 5.801444 TGCAAATCGATCATCAACATTTGAC 59.199 36.000 14.07 8.38 43.48 3.18
1556 1875 4.282950 GCTTCTGCAAATCGATCATCAA 57.717 40.909 0.00 0.00 39.41 2.57
1557 1876 3.957671 GCTTCTGCAAATCGATCATCA 57.042 42.857 0.00 0.00 39.41 3.07
1662 1985 3.199946 TCTGCCCTAACAGACCTAAATGG 59.800 47.826 0.00 0.00 41.72 3.16
1694 2018 1.865788 GAACTTGGCATGGCGCAGAA 61.866 55.000 21.12 7.32 45.17 3.02
1696 2020 1.940883 ATGAACTTGGCATGGCGCAG 61.941 55.000 15.27 14.93 45.17 5.18
1841 2172 1.455248 TGGGCCTCGTTATTTTTCCG 58.545 50.000 4.53 0.00 0.00 4.30
1843 2174 6.317893 TCTCTATTTGGGCCTCGTTATTTTTC 59.682 38.462 4.53 0.00 0.00 2.29
1887 2219 2.722094 CTATAAAACTGGGCTGGTGCA 58.278 47.619 0.00 0.00 41.91 4.57
2029 2441 3.429822 CCTCTGGCCAATATTTTGTGCAG 60.430 47.826 7.01 0.00 33.36 4.41
2174 2792 3.524789 TCACCCTAGCTAGTAGGTGTACA 59.475 47.826 31.70 19.54 46.66 2.90
2293 2912 9.223099 CTATTTCATATCTTGGTGTGATGCATA 57.777 33.333 0.00 0.00 0.00 3.14
2491 3330 9.745880 CGTGTTAGGTTGAACTATGAACTATAT 57.254 33.333 0.00 0.00 0.00 0.86
2492 3331 8.959548 TCGTGTTAGGTTGAACTATGAACTATA 58.040 33.333 0.00 0.00 0.00 1.31
2493 3332 7.758528 GTCGTGTTAGGTTGAACTATGAACTAT 59.241 37.037 0.00 0.00 0.00 2.12
2523 3366 6.319399 CAGGTGGTGTTTTATCCGTTTTATC 58.681 40.000 0.00 0.00 0.00 1.75
2559 3428 1.181098 TTGGCCTTGGAGCAAGAAGC 61.181 55.000 3.32 0.00 43.42 3.86
2560 3429 0.600057 GTTGGCCTTGGAGCAAGAAG 59.400 55.000 3.32 0.00 43.42 2.85
2561 3430 0.185901 AGTTGGCCTTGGAGCAAGAA 59.814 50.000 3.32 0.00 43.42 2.52
2562 3431 0.250901 GAGTTGGCCTTGGAGCAAGA 60.251 55.000 3.32 0.00 43.42 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.