AutoCloner

Multiple sequence alignment - TraesCS2D01G135300

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G135300	chr2D	100.000	4323	0	0	5286	9608	79538027	79542349	0.000000e+00	7984.0
1	TraesCS2D01G135300	chr2D	100.000	3470	0	0	1	3470	79532742	79536211	0.000000e+00	6408.0
2	TraesCS2D01G135300	chr2D	100.000	1228	0	0	3791	5018	79536532	79537759	0.000000e+00	2268.0
3	TraesCS2D01G135300	chr2D	97.295	1183	30	2	2265	3446	12803665	12804846	0.000000e+00	2006.0
4	TraesCS2D01G135300	chr2D	90.108	1203	62	16	5364	6541	545769216	545770386	0.000000e+00	1509.0
5	TraesCS2D01G135300	chr2D	89.409	1218	74	28	3791	4997	545767712	545768885	0.000000e+00	1483.0
6	TraesCS2D01G135300	chr2D	89.567	901	87	5	977	1876	79608984	79609878	0.000000e+00	1136.0
7	TraesCS2D01G135300	chr2D	84.556	518	69	9	8994	9505	458544164	458543652	4.010000e-138	503.0
8	TraesCS2D01G135300	chr2D	82.917	521	79	7	8991	9505	458538005	458537489	2.440000e-125	460.0
9	TraesCS2D01G135300	chr2D	80.901	555	71	27	4472	5018	545768204	545768731	1.160000e-108	405.0
10	TraesCS2D01G135300	chr2D	78.411	579	68	40	4472	5018	79537033	79537586	3.350000e-84	324.0
11	TraesCS2D01G135300	chr2D	93.953	215	11	2	6613	6826	545780923	545781136	3.350000e-84	324.0
12	TraesCS2D01G135300	chr2D	80.702	285	40	14	4467	4745	31008857	31008582	3.520000e-49	207.0
13	TraesCS2D01G135300	chr5D	97.826	1472	24	7	5330	6797	454271741	454273208	0.000000e+00	2534.0
14	TraesCS2D01G135300	chr5D	97.095	1205	32	3	2268	3470	427149723	427150926	0.000000e+00	2028.0
15	TraesCS2D01G135300	chr5D	91.772	1264	65	18	3791	5018	454269732	454270992	0.000000e+00	1722.0
16	TraesCS2D01G135300	chr5D	93.642	519	26	6	4211	4727	454270785	454271298	0.000000e+00	769.0
17	TraesCS2D01G135300	chr5D	86.288	299	31	7	436	725	55542695	55542398	5.600000e-82	316.0
18	TraesCS2D01G135300	chr5D	96.178	157	6	0	2036	2192	71475026	71474870	3.440000e-64	257.0
19	TraesCS2D01G135300	chr5D	94.891	137	7	0	1901	2037	454269502	454269638	2.100000e-51	215.0
20	TraesCS2D01G135300	chr5D	79.402	301	48	9	5771	6062	124837009	124837304	5.880000e-47	200.0
21	TraesCS2D01G135300	chr5D	78.859	298	40	21	5356	5634	139132177	139131884	7.670000e-41	180.0
22	TraesCS2D01G135300	chr5D	80.465	215	27	11	5330	5536	30722721	30722514	6.010000e-32	150.0
23	TraesCS2D01G135300	chr5D	76.642	274	59	3	5793	6061	483585762	483586035	7.780000e-31	147.0
24	TraesCS2D01G135300	chr5D	100.000	75	0	0	2197	2271	454269657	454269731	1.300000e-28	139.0
25	TraesCS2D01G135300	chr5D	72.874	494	81	40	5346	5802	67968221	67967744	4.710000e-23	121.0
26	TraesCS2D01G135300	chr5D	92.857	56	4	0	6775	6830	545803729	545803784	2.220000e-11	82.4
27	TraesCS2D01G135300	chr2B	86.634	1863	165	42	6884	8719	131128861	131130666	0.000000e+00	1984.0
28	TraesCS2D01G135300	chr2B	93.932	1203	68	5	2269	3470	741151720	741150522	0.000000e+00	1812.0
29	TraesCS2D01G135300	chr2B	93.599	1203	73	4	2269	3470	741137820	741139019	0.000000e+00	1792.0
30	TraesCS2D01G135300	chr2B	94.439	1115	46	3	761	1863	131127336	131128446	0.000000e+00	1701.0
31	TraesCS2D01G135300	chr2B	89.978	898	80	6	972	1868	131133488	131134376	0.000000e+00	1151.0
32	TraesCS2D01G135300	chr2B	79.808	312	61	2	1107	1416	475305619	475305308	9.710000e-55	226.0
33	TraesCS2D01G135300	chr2B	86.559	186	21	3	7386	7569	131138206	131138389	1.640000e-47	202.0
34	TraesCS2D01G135300	chr2A	97.646	1147	26	1	755	1901	80231007	80232152	0.000000e+00	1967.0
35	TraesCS2D01G135300	chr2A	89.987	1518	99	22	6970	8473	80232546	80234024	0.000000e+00	1912.0
36	TraesCS2D01G135300	chr2A	89.625	906	84	7	972	1876	80237095	80237991	0.000000e+00	1144.0
37	TraesCS2D01G135300	chr2A	82.012	517	67	10	8997	9505	654669718	654669220	5.370000e-112	416.0
38	TraesCS2D01G135300	chr2A	84.270	445	49	10	1	436	80230552	80230984	1.930000e-111	414.0
39	TraesCS2D01G135300	chr2A	79.412	340	64	5	1081	1416	537967486	537967149	1.610000e-57	235.0
40	TraesCS2D01G135300	chr2A	83.838	198	30	2	7386	7582	80242544	80242740	4.580000e-43	187.0
41	TraesCS2D01G135300	chr2A	91.803	61	5	0	6775	6835	19309164	19309224	1.720000e-12	86.1
42	TraesCS2D01G135300	chr6A	94.150	1282	42	10	5288	6556	596600577	596599316	0.000000e+00	1921.0
43	TraesCS2D01G135300	chr6A	91.567	1257	84	14	5347	6594	512825299	512824056	0.000000e+00	1714.0
44	TraesCS2D01G135300	chr6A	91.954	1131	67	16	5474	6594	457316548	457315432	0.000000e+00	1563.0
45	TraesCS2D01G135300	chr6A	88.076	1258	87	35	3791	5018	596602063	596600839	0.000000e+00	1434.0
46	TraesCS2D01G135300	chr6A	91.626	1027	66	10	5571	6594	50361447	50360438	0.000000e+00	1402.0
47	TraesCS2D01G135300	chr6A	87.151	1253	90	27	3791	5013	512826384	512825173	0.000000e+00	1356.0
48	TraesCS2D01G135300	chr6A	91.421	746	50	10	3793	4533	50405842	50405106	0.000000e+00	1011.0
49	TraesCS2D01G135300	chr6A	91.287	746	50	11	3793	4533	50462441	50461706	0.000000e+00	1003.0
50	TraesCS2D01G135300	chr6A	87.543	875	62	27	3791	4654	457317824	457316986	0.000000e+00	968.0
51	TraesCS2D01G135300	chr6A	84.314	663	58	21	4362	5009	596601535	596600904	2.970000e-169	606.0
52	TraesCS2D01G135300	chr6A	85.837	466	38	12	4556	5017	50404866	50404425	4.060000e-128	470.0
53	TraesCS2D01G135300	chr6A	81.961	510	69	11	9002	9505	58063358	58062866	2.500000e-110	411.0
54	TraesCS2D01G135300	chr6A	82.101	514	45	17	4367	4878	457317310	457316842	6.990000e-106	396.0
55	TraesCS2D01G135300	chr6A	87.190	242	13	2	6589	6830	457315362	457315139	9.570000e-65	259.0
56	TraesCS2D01G135300	chr6A	95.402	87	4	0	6589	6675	512820099	512820013	1.300000e-28	139.0
57	TraesCS2D01G135300	chr6A	95.402	87	4	0	6589	6675	512823986	512823900	1.300000e-28	139.0
58	TraesCS2D01G135300	chr6A	92.708	96	6	1	6735	6830	50360257	50360163	4.680000e-28	137.0
59	TraesCS2D01G135300	chr6A	98.667	75	1	0	2197	2271	596602138	596602064	6.050000e-27	134.0
60	TraesCS2D01G135300	chr6A	89.109	101	10	1	1938	2037	596602257	596602157	3.640000e-24	124.0
61	TraesCS2D01G135300	chr6A	93.750	80	5	0	6589	6668	50360368	50360289	4.710000e-23	121.0
62	TraesCS2D01G135300	chr6A	97.183	71	0	2	6553	6622	596599257	596599326	1.700000e-22	119.0
63	TraesCS2D01G135300	chr6A	89.552	67	7	0	1901	1967	50407868	50407802	1.720000e-12	86.1
64	TraesCS2D01G135300	chr6A	88.060	67	8	0	1901	1967	50464460	50464394	8.000000e-11	80.5
65	TraesCS2D01G135300	chr7D	89.583	1536	91	48	5346	6830	558894725	558896242	0.000000e+00	1886.0
66	TraesCS2D01G135300	chr7D	95.713	863	25	6	3791	4641	558893225	558894087	0.000000e+00	1378.0
67	TraesCS2D01G135300	chr7D	85.714	518	64	8	8994	9505	51513754	51513241	1.100000e-148	538.0
68	TraesCS2D01G135300	chr7D	75.847	708	117	34	4307	5000	147683824	147683157	2.610000e-80	311.0
69	TraesCS2D01G135300	chr7D	89.520	229	13	7	5371	5588	558894694	558894922	7.350000e-71	279.0
70	TraesCS2D01G135300	chr7D	96.319	163	5	1	2031	2192	34397297	34397135	5.720000e-67	267.0
71	TraesCS2D01G135300	chr7D	83.398	259	31	10	129	378	611091364	611091619	7.510000e-56	230.0
72	TraesCS2D01G135300	chr7D	94.891	137	7	0	1901	2037	558892995	558893131	2.100000e-51	215.0
73	TraesCS2D01G135300	chr7D	98.667	75	1	0	2197	2271	558893150	558893224	6.050000e-27	134.0
74	TraesCS2D01G135300	chr7A	94.360	1188	63	4	2268	3454	134727744	134726560	0.000000e+00	1820.0
75	TraesCS2D01G135300	chr7A	81.798	445	61	18	992	1428	116654204	116653772	1.190000e-93	355.0
76	TraesCS2D01G135300	chr4A	93.932	1203	68	5	2270	3470	81264018	81265217	0.000000e+00	1812.0
77	TraesCS2D01G135300	chr4A	83.486	218	25	7	177	386	577754665	577754451	9.850000e-45	193.0
78	TraesCS2D01G135300	chr4A	94.915	59	3	0	6772	6830	604164899	604164957	1.030000e-14	93.5
79	TraesCS2D01G135300	chr4A	92.453	53	4	0	1898	1950	742846459	742846511	1.030000e-09	76.8
80	TraesCS2D01G135300	chr6B	93.849	1203	68	6	2269	3470	644363367	644362170	0.000000e+00	1807.0
81	TraesCS2D01G135300	chr6B	79.849	531	88	16	8991	9507	132751076	132750551	4.240000e-98	370.0
82	TraesCS2D01G135300	chr6B	85.238	210	20	7	206	407	661915498	661915704	1.260000e-48	206.0
83	TraesCS2D01G135300	chr3B	93.693	1205	72	4	2267	3470	671133186	671134387	0.000000e+00	1801.0
84	TraesCS2D01G135300	chr3B	88.889	279	21	7	436	705	377115132	377115409	1.550000e-87	335.0
85	TraesCS2D01G135300	chr3B	96.178	157	6	0	2036	2192	605663945	605663789	3.440000e-64	257.0
86	TraesCS2D01G135300	chr3B	93.443	61	4	0	6773	6833	129248582	129248522	3.700000e-14	91.6
87	TraesCS2D01G135300	chr1B	93.605	1204	73	4	2268	3470	77613396	77614596	0.000000e+00	1794.0
88	TraesCS2D01G135300	chr1B	89.571	163	15	2	9345	9506	669704806	669704967	1.260000e-48	206.0
89	TraesCS2D01G135300	chr1B	80.078	256	36	8	142	391	350800240	350800486	9.920000e-40	176.0
90	TraesCS2D01G135300	chr1B	79.487	117	21	3	9334	9449	641206563	641206677	8.000000e-11	80.5
91	TraesCS2D01G135300	chr4B	92.167	1149	69	14	5647	6783	5971744	5970605	0.000000e+00	1604.0
92	TraesCS2D01G135300	chr4B	89.415	633	40	7	9001	9608	625169364	625169994	0.000000e+00	773.0
93	TraesCS2D01G135300	chr4B	84.553	615	69	19	4366	4972	5972866	5972270	3.870000e-163	586.0
94	TraesCS2D01G135300	chr4B	84.424	642	45	18	8993	9608	374734140	374734752	1.800000e-161	580.0
95	TraesCS2D01G135300	chr4B	80.844	308	54	5	5805	6110	517634172	517634476	4.490000e-58	237.0
96	TraesCS2D01G135300	chr4B	88.321	137	15	1	1902	2037	5973519	5973383	7.720000e-36	163.0
97	TraesCS2D01G135300	chr4B	94.521	73	4	0	2199	2271	5973362	5973290	7.890000e-21	113.0
98	TraesCS2D01G135300	chr1A	88.799	1241	88	30	3791	5018	488618410	488617208	0.000000e+00	1474.0
99	TraesCS2D01G135300	chr1A	91.445	713	54	6	5885	6594	488609434	488608726	0.000000e+00	972.0
100	TraesCS2D01G135300	chr1A	90.608	543	38	8	5347	5883	488617341	488616806	0.000000e+00	708.0
101	TraesCS2D01G135300	chr1A	85.537	242	17	2	6589	6830	488608656	488608433	4.490000e-58	237.0
102	TraesCS2D01G135300	chr3A	84.479	509	64	13	9003	9505	148625961	148626460	1.120000e-133	488.0
103	TraesCS2D01G135300	chr3A	88.571	280	22	5	436	705	319962324	319962603	2.000000e-86	331.0
104	TraesCS2D01G135300	chr3A	81.437	334	42	14	5347	5665	469072895	469073223	1.240000e-63	255.0
105	TraesCS2D01G135300	chr5B	81.688	628	75	20	8994	9589	50226447	50225828	4.030000e-133	486.0
106	TraesCS2D01G135300	chr5B	87.943	282	27	4	436	710	136620547	136620266	9.310000e-85	326.0
107	TraesCS2D01G135300	chr5B	80.899	267	40	7	176	434	535400333	535400070	5.880000e-47	200.0
108	TraesCS2D01G135300	chr5B	91.935	62	4	1	6775	6835	648730120	648730059	1.720000e-12	86.1
109	TraesCS2D01G135300	chr5B	86.154	65	9	0	129	193	439263536	439263600	4.810000e-08	71.3
110	TraesCS2D01G135300	chr3D	89.247	279	21	6	436	705	255424404	255424682	3.320000e-89	340.0
111	TraesCS2D01G135300	chr3D	87.285	291	31	6	436	721	416191839	416191550	2.590000e-85	327.0
112	TraesCS2D01G135300	chr3D	88.645	273	23	6	436	700	491959965	491960237	9.310000e-85	326.0
113	TraesCS2D01G135300	chr3D	82.486	354	44	11	5771	6117	7017434	7017092	2.620000e-75	294.0
114	TraesCS2D01G135300	chr3D	95.706	163	5	2	2031	2192	552575314	552575153	2.660000e-65	261.0
115	TraesCS2D01G135300	chr3D	94.479	163	9	0	2028	2190	252197656	252197494	1.600000e-62	252.0
116	TraesCS2D01G135300	chr4D	88.055	293	23	8	436	717	301140993	301141284	4.300000e-88	337.0
117	TraesCS2D01G135300	chr4D	83.000	300	39	9	144	435	25461195	25461490	2.660000e-65	261.0
118	TraesCS2D01G135300	chr4D	95.625	160	6	1	2034	2192	503143966	503144125	1.240000e-63	255.0
119	TraesCS2D01G135300	chr4D	80.345	290	48	6	5771	6052	56701243	56700955	2.720000e-50	211.0
120	TraesCS2D01G135300	chr4D	78.193	321	62	7	5797	6113	493091953	493091637	2.120000e-46	198.0
121	TraesCS2D01G135300	chr4D	77.522	347	58	15	5771	6105	132925133	132924795	3.540000e-44	191.0
122	TraesCS2D01G135300	chr4D	79.608	255	49	2	5864	6115	282784569	282784315	7.670000e-41	180.0
123	TraesCS2D01G135300	chr4D	76.254	299	58	9	5771	6061	475128674	475128381	7.780000e-31	147.0
124	TraesCS2D01G135300	chr4D	76.981	265	53	4	5836	6097	282790954	282790695	2.800000e-30	145.0
125	TraesCS2D01G135300	chr4D	76.677	313	37	26	5334	5626	448381110	448381406	3.620000e-29	141.0
126	TraesCS2D01G135300	chr4D	76.603	312	38	23	5334	5626	448383304	448383599	1.300000e-28	139.0
127	TraesCS2D01G135300	chr4D	80.095	211	21	15	5334	5536	448379943	448380140	4.680000e-28	137.0
128	TraesCS2D01G135300	chr4D	80.095	211	21	15	5334	5536	448382187	448382384	4.680000e-28	137.0
129	TraesCS2D01G135300	chr4D	80.095	211	21	15	5334	5536	448384422	448384619	4.680000e-28	137.0
130	TraesCS2D01G135300	chr4D	76.206	311	42	21	5334	5626	416141717	416141421	1.680000e-27	135.0
131	TraesCS2D01G135300	chr4D	76.433	314	37	25	5334	5626	448385523	448385820	1.680000e-27	135.0
132	TraesCS2D01G135300	chr4D	80.526	190	18	13	5334	5517	448387253	448387429	2.820000e-25	128.0
133	TraesCS2D01G135300	chr4D	79.147	211	23	15	5334	5536	416138699	416138502	1.010000e-24	126.0
134	TraesCS2D01G135300	chr4D	78.774	212	28	13	5329	5532	416140275	416140073	1.010000e-24	126.0
135	TraesCS2D01G135300	chr4D	77.612	201	34	10	5920	6115	509245926	509246120	2.840000e-20	111.0
136	TraesCS2D01G135300	chr4D	90.476	63	4	1	6773	6833	139631065	139631003	2.220000e-11	82.4
137	TraesCS2D01G135300	chr4D	94.340	53	3	0	6783	6835	435974084	435974032	2.220000e-11	82.4
138	TraesCS2D01G135300	chr4D	91.525	59	4	1	6783	6841	322221229	322221172	8.000000e-11	80.5
139	TraesCS2D01G135300	chr4D	81.250	80	8	6	5723	5802	416142349	416142277	3.750000e-04	58.4
140	TraesCS2D01G135300	chr4D	75.556	135	19	11	5769	5890	16421378	16421245	5.000000e-03	54.7
141	TraesCS2D01G135300	chr4D	72.093	215	47	11	5861	6072	56702161	56701957	1.700000e-02	52.8
142	TraesCS2D01G135300	chr6D	88.809	277	21	5	436	704	3744236	3743962	2.000000e-86	331.0
143	TraesCS2D01G135300	chr6D	83.333	174	23	6	5912	6082	318186798	318186968	1.290000e-33	156.0
144	TraesCS2D01G135300	chr6D	81.081	111	20	1	5773	5882	10010716	10010826	4.780000e-13	87.9
145	TraesCS2D01G135300	chr6D	93.333	60	2	2	6778	6835	61766583	61766524	4.780000e-13	87.9
146	TraesCS2D01G135300	chr6D	96.154	52	2	0	6778	6829	7748216	7748165	1.720000e-12	86.1
147	TraesCS2D01G135300	chr6D	91.803	61	4	1	6783	6842	4798005	4798065	6.180000e-12	84.2
148	TraesCS2D01G135300	chr6D	89.231	65	7	0	6764	6828	353640639	353640575	2.220000e-11	82.4
149	TraesCS2D01G135300	chr6D	90.909	55	5	0	6777	6831	9877148	9877202	3.720000e-09	75.0
150	TraesCS2D01G135300	chr6D	74.242	198	37	10	5861	6055	437346921	437347107	4.810000e-08	71.3
151	TraesCS2D01G135300	chr6D	100.000	29	0	0	6786	6814	110724953	110724925	5.000000e-03	54.7
152	TraesCS2D01G135300	chr6D	92.308	39	1	2	6779	6816	269117025	269116988	5.000000e-03	54.7
153	TraesCS2D01G135300	chr1D	96.795	156	5	0	2037	2192	25440424	25440579	2.660000e-65	261.0
154	TraesCS2D01G135300	chr1D	96.154	156	6	0	2037	2192	31491106	31491261	1.240000e-63	255.0
155	TraesCS2D01G135300	chr1D	95.062	162	7	1	2032	2192	195446902	195447063	4.450000e-63	254.0
156	TraesCS2D01G135300	chr1D	80.723	249	45	2	5861	6106	397164225	397163977	3.540000e-44	191.0
157	TraesCS2D01G135300	chr1D	78.214	280	55	2	5771	6044	3704972	3704693	3.570000e-39	174.0
158	TraesCS2D01G135300	chr1D	83.243	185	27	3	5924	6106	18117699	18117881	5.970000e-37	167.0
159	TraesCS2D01G135300	chr1D	83.243	185	27	3	5924	6106	18120759	18120941	5.970000e-37	167.0
160	TraesCS2D01G135300	chr1D	81.622	185	30	3	5924	6106	18111390	18111572	6.010000e-32	150.0
161	TraesCS2D01G135300	chr1D	76.610	295	52	15	5792	6076	252287167	252286880	7.780000e-31	147.0
162	TraesCS2D01G135300	chr1D	76.642	274	59	3	5793	6061	466001885	466002158	7.780000e-31	147.0
163	TraesCS2D01G135300	chr1D	76.889	225	34	11	5771	5986	420635170	420635385	2.840000e-20	111.0
164	TraesCS2D01G135300	chr1D	94.737	57	2	1	6775	6830	466009078	466009134	4.780000e-13	87.9
165	TraesCS2D01G135300	chr1D	90.323	62	5	1	6775	6835	437689102	437689163	8.000000e-11	80.5
166	TraesCS2D01G135300	chr5A	76.181	529	85	27	4423	4943	600057437	600057932	3.470000e-59	241.0
167	TraesCS2D01G135300	chr5A	82.946	258	30	9	130	378	315263376	315263628	4.520000e-53	220.0
168	TraesCS2D01G135300	chr5A	79.874	318	49	10	134	439	382270952	382271266	1.620000e-52	219.0
169	TraesCS2D01G135300	chrUn	81.579	266	38	7	129	386	99878670	99878932	9.780000e-50	209.0
170	TraesCS2D01G135300	chrUn	76.842	190	35	7	5926	6113	111212464	111212282	2.210000e-16	99.0
171	TraesCS2D01G135300	chrUn	91.379	58	4	1	6775	6831	310738478	310738421	2.880000e-10	78.7
172	TraesCS2D01G135300	chrUn	89.286	56	6	0	6775	6830	348377861	348377806	4.810000e-08	71.3
173	TraesCS2D01G135300	chr7B	93.750	64	3	1	6775	6837	180010378	180010315	2.860000e-15	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G135300	chr2D	79532742	79542349	9607	False	4246.000000	7984	94.602750	1	9608	4	chr2D.!!$F4	9607
1	TraesCS2D01G135300	chr2D	12803665	12804846	1181	False	2006.000000	2006	97.295000	2265	3446	1	chr2D.!!$F1	1181
2	TraesCS2D01G135300	chr2D	79608984	79609878	894	False	1136.000000	1136	89.567000	977	1876	1	chr2D.!!$F2	899
3	TraesCS2D01G135300	chr2D	545767712	545770386	2674	False	1132.333333	1509	86.806000	3791	6541	3	chr2D.!!$F5	2750
4	TraesCS2D01G135300	chr2D	458543652	458544164	512	True	503.000000	503	84.556000	8994	9505	1	chr2D.!!$R3	511
5	TraesCS2D01G135300	chr2D	458537489	458538005	516	True	460.000000	460	82.917000	8991	9505	1	chr2D.!!$R2	514
6	TraesCS2D01G135300	chr5D	427149723	427150926	1203	False	2028.000000	2028	97.095000	2268	3470	1	chr5D.!!$F2	1202
7	TraesCS2D01G135300	chr5D	454269502	454273208	3706	False	1075.800000	2534	95.626200	1901	6797	5	chr5D.!!$F5	4896
8	TraesCS2D01G135300	chr2B	741150522	741151720	1198	True	1812.000000	1812	93.932000	2269	3470	1	chr2B.!!$R2	1201
9	TraesCS2D01G135300	chr2B	741137820	741139019	1199	False	1792.000000	1792	93.599000	2269	3470	1	chr2B.!!$F1	1201
10	TraesCS2D01G135300	chr2B	131127336	131138389	11053	False	1259.500000	1984	89.402500	761	8719	4	chr2B.!!$F2	7958
11	TraesCS2D01G135300	chr2A	80230552	80237991	7439	False	1359.250000	1967	90.382000	1	8473	4	chr2A.!!$F3	8472
12	TraesCS2D01G135300	chr6A	596599316	596602257	2941	True	843.800000	1921	90.863200	1938	6556	5	chr6A.!!$R7	4618
13	TraesCS2D01G135300	chr6A	512820013	512826384	6371	True	837.000000	1714	92.380500	3791	6675	4	chr6A.!!$R6	2884
14	TraesCS2D01G135300	chr6A	457315139	457317824	2685	True	796.500000	1563	87.197000	3791	6830	4	chr6A.!!$R5	3039
15	TraesCS2D01G135300	chr6A	50360163	50361447	1284	True	553.333333	1402	92.694667	5571	6830	3	chr6A.!!$R2	1259
16	TraesCS2D01G135300	chr6A	50461706	50464460	2754	True	541.750000	1003	89.673500	1901	4533	2	chr6A.!!$R4	2632
17	TraesCS2D01G135300	chr6A	50404425	50407868	3443	True	522.366667	1011	88.936667	1901	5017	3	chr6A.!!$R3	3116
18	TraesCS2D01G135300	chr7D	558892995	558896242	3247	False	778.400000	1886	93.674800	1901	6830	5	chr7D.!!$F2	4929
19	TraesCS2D01G135300	chr7D	51513241	51513754	513	True	538.000000	538	85.714000	8994	9505	1	chr7D.!!$R2	511
20	TraesCS2D01G135300	chr7D	147683157	147683824	667	True	311.000000	311	75.847000	4307	5000	1	chr7D.!!$R3	693
21	TraesCS2D01G135300	chr7A	134726560	134727744	1184	True	1820.000000	1820	94.360000	2268	3454	1	chr7A.!!$R2	1186
22	TraesCS2D01G135300	chr4A	81264018	81265217	1199	False	1812.000000	1812	93.932000	2270	3470	1	chr4A.!!$F1	1200
23	TraesCS2D01G135300	chr6B	644362170	644363367	1197	True	1807.000000	1807	93.849000	2269	3470	1	chr6B.!!$R2	1201
24	TraesCS2D01G135300	chr6B	132750551	132751076	525	True	370.000000	370	79.849000	8991	9507	1	chr6B.!!$R1	516
25	TraesCS2D01G135300	chr3B	671133186	671134387	1201	False	1801.000000	1801	93.693000	2267	3470	1	chr3B.!!$F2	1203
26	TraesCS2D01G135300	chr1B	77613396	77614596	1200	False	1794.000000	1794	93.605000	2268	3470	1	chr1B.!!$F1	1202
27	TraesCS2D01G135300	chr4B	625169364	625169994	630	False	773.000000	773	89.415000	9001	9608	1	chr4B.!!$F3	607
28	TraesCS2D01G135300	chr4B	5970605	5973519	2914	True	616.500000	1604	89.890500	1902	6783	4	chr4B.!!$R1	4881
29	TraesCS2D01G135300	chr4B	374734140	374734752	612	False	580.000000	580	84.424000	8993	9608	1	chr4B.!!$F1	615
30	TraesCS2D01G135300	chr1A	488616806	488618410	1604	True	1091.000000	1474	89.703500	3791	5883	2	chr1A.!!$R2	2092
31	TraesCS2D01G135300	chr1A	488608433	488609434	1001	True	604.500000	972	88.491000	5885	6830	2	chr1A.!!$R1	945
32	TraesCS2D01G135300	chr5B	50225828	50226447	619	True	486.000000	486	81.688000	8994	9589	1	chr5B.!!$R1	595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
109	110	0.035317	CTGTAGCTGGTGTGGCAAGA	59.965	55.000	0.00	0.00	0.00	3.02	F
115	116	0.035317	CTGGTGTGGCAAGAGTAGCA	59.965	55.000	0.00	0.00	0.00	3.49	F
1894	1913	0.103876	ACTCCCCTCTCCCCACTTTT	60.104	55.000	0.00	0.00	0.00	2.27	F
1897	1916	0.777446	CCCCTCTCCCCACTTTTTCA	59.223	55.000	0.00	0.00	0.00	2.69	F
2013	2033	0.907704	TGATCCTGTGGTTACCCGCT	60.908	55.000	0.00	0.00	42.08	5.52	F
2686	4543	1.078143	GAAGAATGCCGCCCTCACT	60.078	57.895	0.00	0.00	0.00	3.41	F
2768	4625	1.191535	CGGTCCATGTCCAACTAGGA	58.808	55.000	0.00	0.00	46.75	2.94	F
4654	7500	0.454285	GTGTGTGTGTGTGTGTGTGC	60.454	55.000	0.00	0.00	0.00	4.57	F
5464	9508	0.034896	AACTCGCAACTAGGGTGTGG	59.965	55.000	8.78	3.89	37.05	4.17	F
5991	10442	0.550914	TCCCAGTTGCAAGTTCACCT	59.449	50.000	3.38	0.00	0.00	4.00	F
7375	12255	0.750249	TCACTGTGCGAACCTCTTGA	59.250	50.000	2.12	0.00	0.00	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2077	2097	1.964552	CCAAATGTTGGCTTGCCAAA	58.035	45.000	26.12	17.09	45.17	3.28	R
2096	2116	3.456280	TGTTGGCAACTTCTGATTTTGC	58.544	40.909	28.71	12.84	44.05	3.68	R
3082	4939	0.620556	GTGATTTCCTCTCTGGCCCA	59.379	55.000	0.00	0.00	35.26	5.36	R
3835	5693	0.826256	AAAACGGAAGAAGGGGCCAC	60.826	55.000	4.39	0.00	0.00	5.01	R
4194	6087	7.561021	AACACACACACACACTTATTCATAA	57.439	32.000	0.00	0.00	0.00	1.90	R
4606	7452	0.173481	CGAGTCGATGGTGGACATGT	59.827	55.000	6.73	0.00	40.72	3.21	R
4659	7505	0.179108	GGGATCCTCTACACACACGC	60.179	60.000	12.58	0.00	0.00	5.34	R
5892	10330	0.452184	ACACGTCCTCAGTAGCGATG	59.548	55.000	0.00	0.00	0.00	3.84	R
7527	12407	0.320247	CTGCGTCTTCAAGGCTCTGT	60.320	55.000	0.00	0.00	39.53	3.41	R
7717	12597	0.809241	CACCTCTGCAAGATCTCCGC	60.809	60.000	9.59	9.59	45.62	5.54	R
8924	13861	0.383949	GTGGTTTGAAAGCAGCCGAA	59.616	50.000	10.38	0.00	39.94	4.30	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	1.347817	CGAAGAGCTCCGAGCAACAC	61.348	60.000	22.29	10.26	45.56	3.32
58	59	5.174943	CGTCAACTTTTATCTTGGCAAAACC	59.825	40.000	0.00	0.00	39.84	3.27
89	90	2.434185	GCCATCGTCGCCTTGTGA	60.434	61.111	0.00	0.00	0.00	3.58
97	98	0.038159	GTCGCCTTGTGACTGTAGCT	60.038	55.000	0.00	0.00	39.62	3.32
100	101	0.035458	GCCTTGTGACTGTAGCTGGT	59.965	55.000	0.00	0.00	0.00	4.00
103	104	2.138320	CTTGTGACTGTAGCTGGTGTG	58.862	52.381	0.00	0.00	0.00	3.82
108	109	0.250467	ACTGTAGCTGGTGTGGCAAG	60.250	55.000	0.00	0.00	0.00	4.01
109	110	0.035317	CTGTAGCTGGTGTGGCAAGA	59.965	55.000	0.00	0.00	0.00	3.02
110	111	0.035317	TGTAGCTGGTGTGGCAAGAG	59.965	55.000	0.00	0.00	0.00	2.85
111	112	0.035458	GTAGCTGGTGTGGCAAGAGT	59.965	55.000	0.00	0.00	0.00	3.24
112	113	1.275291	GTAGCTGGTGTGGCAAGAGTA	59.725	52.381	0.00	0.00	0.00	2.59
113	114	0.322975	AGCTGGTGTGGCAAGAGTAG	59.677	55.000	0.00	0.00	0.00	2.57
114	115	1.301677	GCTGGTGTGGCAAGAGTAGC	61.302	60.000	0.00	0.00	0.00	3.58
115	116	0.035317	CTGGTGTGGCAAGAGTAGCA	59.965	55.000	0.00	0.00	0.00	3.49
116	117	0.472044	TGGTGTGGCAAGAGTAGCAA	59.528	50.000	0.00	0.00	0.00	3.91
117	118	1.073763	TGGTGTGGCAAGAGTAGCAAT	59.926	47.619	0.00	0.00	0.00	3.56
118	119	1.470098	GGTGTGGCAAGAGTAGCAATG	59.530	52.381	0.00	0.00	0.00	2.82
119	120	2.154462	GTGTGGCAAGAGTAGCAATGT	58.846	47.619	0.00	0.00	0.00	2.71
169	170	3.104512	TGGTTAGGAGGACAGTGGTATG	58.895	50.000	0.00	0.00	0.00	2.39
171	172	2.500098	GTTAGGAGGACAGTGGTATGCA	59.500	50.000	0.00	0.00	0.00	3.96
173	174	0.613260	GGAGGACAGTGGTATGCACA	59.387	55.000	0.00	0.00	0.00	4.57
175	176	2.283298	GAGGACAGTGGTATGCACATG	58.717	52.381	0.00	0.00	0.00	3.21
221	223	8.746530	AGACTTGAATTGATGCTCACATTATTT	58.253	29.630	0.00	0.00	36.35	1.40
222	224	8.922058	ACTTGAATTGATGCTCACATTATTTC	57.078	30.769	0.00	0.00	36.35	2.17
228	230	7.649533	TTGATGCTCACATTATTTCTGGATT	57.350	32.000	0.00	0.00	36.35	3.01
242	244	7.968014	ATTTCTGGATTTATTTCAGGCTTCT	57.032	32.000	0.00	0.00	0.00	2.85
244	246	5.819991	TCTGGATTTATTTCAGGCTTCTGT	58.180	37.500	0.00	0.00	39.45	3.41
245	247	5.649395	TCTGGATTTATTTCAGGCTTCTGTG	59.351	40.000	0.00	0.00	39.45	3.66
246	248	5.569355	TGGATTTATTTCAGGCTTCTGTGA	58.431	37.500	0.00	0.00	39.45	3.58
247	249	6.189859	TGGATTTATTTCAGGCTTCTGTGAT	58.810	36.000	0.00	0.00	39.45	3.06
248	250	6.095860	TGGATTTATTTCAGGCTTCTGTGATG	59.904	38.462	0.00	0.00	39.45	3.07
254	261	2.369860	TCAGGCTTCTGTGATGTTCAGT	59.630	45.455	0.00	0.00	39.45	3.41
260	267	1.625315	TCTGTGATGTTCAGTGGGAGG	59.375	52.381	0.00	0.00	34.86	4.30
269	276	0.112606	TCAGTGGGAGGAGACGTTCT	59.887	55.000	0.00	0.00	0.00	3.01
271	278	0.969894	AGTGGGAGGAGACGTTCTTG	59.030	55.000	0.00	0.00	0.00	3.02
276	283	1.401278	GGAGGAGACGTTCTTGTCGAC	60.401	57.143	9.11	9.11	43.70	4.20
278	285	0.728466	GGAGACGTTCTTGTCGACCG	60.728	60.000	14.12	11.30	43.70	4.79
297	304	0.458716	GCGAGGTGCCTAGTGACTTC	60.459	60.000	0.00	0.00	37.76	3.01
319	326	8.552034	ACTTCGTAAAATCTTAAGATGCTATGC	58.448	33.333	18.61	8.04	34.49	3.14
321	328	6.145534	TCGTAAAATCTTAAGATGCTATGCCG	59.854	38.462	18.61	13.53	34.49	5.69
325	332	2.104792	TCTTAAGATGCTATGCCGGCTT	59.895	45.455	29.70	24.47	0.00	4.35
335	342	0.752009	ATGCCGGCTTAGTCTCTCGA	60.752	55.000	29.70	1.81	0.00	4.04
355	362	2.294449	AGGTGCTCATAGCGATAGGA	57.706	50.000	0.00	0.00	46.26	2.94
380	387	2.633657	GCGCATGCGTTCATAGGG	59.366	61.111	37.54	10.41	42.09	3.53
386	393	1.802960	CATGCGTTCATAGGGATGAGC	59.197	52.381	0.00	0.00	43.03	4.26
387	394	0.829990	TGCGTTCATAGGGATGAGCA	59.170	50.000	3.25	1.31	43.03	4.26
391	398	4.466015	TGCGTTCATAGGGATGAGCATATA	59.534	41.667	3.25	0.00	43.03	0.86
395	402	6.096141	CGTTCATAGGGATGAGCATATACTCT	59.904	42.308	4.59	0.00	43.03	3.24
403	410	6.815641	GGGATGAGCATATACTCTTGTATGTG	59.184	42.308	4.59	8.05	45.26	3.21
407	414	6.266330	TGAGCATATACTCTTGTATGTGAGCT	59.734	38.462	14.17	9.96	45.29	4.09
409	416	8.183104	AGCATATACTCTTGTATGTGAGCTAA	57.817	34.615	14.17	0.00	45.29	3.09
417	424	7.223582	ACTCTTGTATGTGAGCTAATTCGATTG	59.776	37.037	0.00	0.00	33.92	2.67
422	429	8.626526	TGTATGTGAGCTAATTCGATTGTACTA	58.373	33.333	0.00	0.00	0.00	1.82
423	430	7.932120	ATGTGAGCTAATTCGATTGTACTAC	57.068	36.000	0.00	0.00	0.00	2.73
427	434	7.641411	GTGAGCTAATTCGATTGTACTACGTTA	59.359	37.037	0.00	0.00	0.00	3.18
429	436	8.915871	AGCTAATTCGATTGTACTACGTTAAA	57.084	30.769	0.00	0.00	0.00	1.52
430	437	9.357652	AGCTAATTCGATTGTACTACGTTAAAA	57.642	29.630	0.00	0.00	0.00	1.52
463	470	4.499037	AACGCAAGGTTCTTATTTCACC	57.501	40.909	0.00	0.00	46.39	4.02
464	471	3.751518	ACGCAAGGTTCTTATTTCACCT	58.248	40.909	0.00	0.00	43.17	4.00
466	473	4.583073	ACGCAAGGTTCTTATTTCACCTTT	59.417	37.500	0.00	0.00	46.85	3.11
467	474	5.154222	CGCAAGGTTCTTATTTCACCTTTC	58.846	41.667	0.00	0.00	46.85	2.62
468	475	5.048713	CGCAAGGTTCTTATTTCACCTTTCT	60.049	40.000	0.00	0.00	46.85	2.52
469	476	6.515035	CGCAAGGTTCTTATTTCACCTTTCTT	60.515	38.462	0.00	0.00	46.85	2.52
470	477	7.210174	GCAAGGTTCTTATTTCACCTTTCTTT	58.790	34.615	0.00	0.00	46.85	2.52
471	478	7.382488	GCAAGGTTCTTATTTCACCTTTCTTTC	59.618	37.037	0.00	0.00	46.85	2.62
472	479	7.526142	AGGTTCTTATTTCACCTTTCTTTCC	57.474	36.000	0.00	0.00	37.70	3.13
473	480	7.066781	AGGTTCTTATTTCACCTTTCTTTCCA	58.933	34.615	0.00	0.00	37.70	3.53
474	481	7.014326	AGGTTCTTATTTCACCTTTCTTTCCAC	59.986	37.037	0.00	0.00	37.70	4.02
475	482	6.894339	TCTTATTTCACCTTTCTTTCCACC	57.106	37.500	0.00	0.00	0.00	4.61
476	483	6.369629	TCTTATTTCACCTTTCTTTCCACCA	58.630	36.000	0.00	0.00	0.00	4.17
477	484	4.937201	ATTTCACCTTTCTTTCCACCAC	57.063	40.909	0.00	0.00	0.00	4.16
478	485	2.358322	TCACCTTTCTTTCCACCACC	57.642	50.000	0.00	0.00	0.00	4.61
479	486	1.133606	TCACCTTTCTTTCCACCACCC	60.134	52.381	0.00	0.00	0.00	4.61
480	487	0.187606	ACCTTTCTTTCCACCACCCC	59.812	55.000	0.00	0.00	0.00	4.95
481	488	0.482887	CCTTTCTTTCCACCACCCCT	59.517	55.000	0.00	0.00	0.00	4.79
482	489	1.133167	CCTTTCTTTCCACCACCCCTT	60.133	52.381	0.00	0.00	0.00	3.95
483	490	2.239400	CTTTCTTTCCACCACCCCTTC	58.761	52.381	0.00	0.00	0.00	3.46
484	491	0.109723	TTCTTTCCACCACCCCTTCG	59.890	55.000	0.00	0.00	0.00	3.79
485	492	1.057851	TCTTTCCACCACCCCTTCGT	61.058	55.000	0.00	0.00	0.00	3.85
486	493	0.605589	CTTTCCACCACCCCTTCGTC	60.606	60.000	0.00	0.00	0.00	4.20
487	494	2.059345	TTTCCACCACCCCTTCGTCC	62.059	60.000	0.00	0.00	0.00	4.79
488	495	3.246112	CCACCACCCCTTCGTCCA	61.246	66.667	0.00	0.00	0.00	4.02
489	496	2.824880	CCACCACCCCTTCGTCCAA	61.825	63.158	0.00	0.00	0.00	3.53
490	497	1.599797	CACCACCCCTTCGTCCAAC	60.600	63.158	0.00	0.00	0.00	3.77
491	498	2.033602	CCACCCCTTCGTCCAACC	59.966	66.667	0.00	0.00	0.00	3.77
492	499	2.526046	CCACCCCTTCGTCCAACCT	61.526	63.158	0.00	0.00	0.00	3.50
493	500	1.454539	CACCCCTTCGTCCAACCTT	59.545	57.895	0.00	0.00	0.00	3.50
494	501	0.605589	CACCCCTTCGTCCAACCTTC	60.606	60.000	0.00	0.00	0.00	3.46
495	502	1.002502	CCCCTTCGTCCAACCTTCC	60.003	63.158	0.00	0.00	0.00	3.46
496	503	1.489560	CCCCTTCGTCCAACCTTCCT	61.490	60.000	0.00	0.00	0.00	3.36
497	504	0.400594	CCCTTCGTCCAACCTTCCTT	59.599	55.000	0.00	0.00	0.00	3.36
498	505	1.523758	CCTTCGTCCAACCTTCCTTG	58.476	55.000	0.00	0.00	0.00	3.61
499	506	1.202770	CCTTCGTCCAACCTTCCTTGT	60.203	52.381	0.00	0.00	0.00	3.16
500	507	2.038033	CCTTCGTCCAACCTTCCTTGTA	59.962	50.000	0.00	0.00	0.00	2.41
501	508	3.307480	CCTTCGTCCAACCTTCCTTGTAT	60.307	47.826	0.00	0.00	0.00	2.29
502	509	3.328382	TCGTCCAACCTTCCTTGTATG	57.672	47.619	0.00	0.00	0.00	2.39
503	510	2.901192	TCGTCCAACCTTCCTTGTATGA	59.099	45.455	0.00	0.00	0.00	2.15
504	511	3.517901	TCGTCCAACCTTCCTTGTATGAT	59.482	43.478	0.00	0.00	0.00	2.45
505	512	4.712829	TCGTCCAACCTTCCTTGTATGATA	59.287	41.667	0.00	0.00	0.00	2.15
506	513	5.188163	TCGTCCAACCTTCCTTGTATGATAA	59.812	40.000	0.00	0.00	0.00	1.75
507	514	6.055588	CGTCCAACCTTCCTTGTATGATAAT	58.944	40.000	0.00	0.00	0.00	1.28
508	515	6.202954	CGTCCAACCTTCCTTGTATGATAATC	59.797	42.308	0.00	0.00	0.00	1.75
509	516	7.054124	GTCCAACCTTCCTTGTATGATAATCA	58.946	38.462	0.00	0.00	0.00	2.57
510	517	7.012421	GTCCAACCTTCCTTGTATGATAATCAC	59.988	40.741	0.00	0.00	0.00	3.06
511	518	7.056635	CCAACCTTCCTTGTATGATAATCACT	58.943	38.462	0.00	0.00	0.00	3.41
512	519	7.557719	CCAACCTTCCTTGTATGATAATCACTT	59.442	37.037	0.00	0.00	0.00	3.16
513	520	9.613428	CAACCTTCCTTGTATGATAATCACTTA	57.387	33.333	0.00	0.00	0.00	2.24
533	540	9.498176	TCACTTAATTTACTTACCTTCTGAACC	57.502	33.333	0.00	0.00	0.00	3.62
534	541	9.280174	CACTTAATTTACTTACCTTCTGAACCA	57.720	33.333	0.00	0.00	0.00	3.67
535	542	9.856162	ACTTAATTTACTTACCTTCTGAACCAA	57.144	29.630	0.00	0.00	0.00	3.67
542	549	9.856162	TTACTTACCTTCTGAACCAATTTTACT	57.144	29.630	0.00	0.00	0.00	2.24
543	550	8.762481	ACTTACCTTCTGAACCAATTTTACTT	57.238	30.769	0.00	0.00	0.00	2.24
544	551	9.197306	ACTTACCTTCTGAACCAATTTTACTTT	57.803	29.630	0.00	0.00	0.00	2.66
600	607	7.664552	AAGATAATTCATGGGCAGAATTTGA	57.335	32.000	14.17	2.26	41.54	2.69
601	608	7.850935	AGATAATTCATGGGCAGAATTTGAT	57.149	32.000	14.17	5.97	41.54	2.57
602	609	7.667557	AGATAATTCATGGGCAGAATTTGATG	58.332	34.615	14.17	0.00	41.54	3.07
603	610	5.943349	AATTCATGGGCAGAATTTGATGA	57.057	34.783	6.13	0.00	41.54	2.92
604	611	5.943349	ATTCATGGGCAGAATTTGATGAA	57.057	34.783	0.00	0.00	34.19	2.57
605	612	4.724074	TCATGGGCAGAATTTGATGAAC	57.276	40.909	0.00	0.00	0.00	3.18
606	613	4.087907	TCATGGGCAGAATTTGATGAACA	58.912	39.130	0.00	0.00	0.00	3.18
607	614	4.712829	TCATGGGCAGAATTTGATGAACAT	59.287	37.500	0.00	0.00	0.00	2.71
608	615	5.188163	TCATGGGCAGAATTTGATGAACATT	59.812	36.000	0.00	0.00	0.00	2.71
609	616	5.075858	TGGGCAGAATTTGATGAACATTC	57.924	39.130	0.00	0.00	0.00	2.67
610	617	4.527427	TGGGCAGAATTTGATGAACATTCA	59.473	37.500	0.00	0.00	42.14	2.57
624	631	6.006759	TGAACATTCATTTACACAATCGCA	57.993	33.333	0.00	0.00	31.01	5.10
625	632	6.619744	TGAACATTCATTTACACAATCGCAT	58.380	32.000	0.00	0.00	31.01	4.73
626	633	7.089538	TGAACATTCATTTACACAATCGCATT	58.910	30.769	0.00	0.00	31.01	3.56
627	634	8.239998	TGAACATTCATTTACACAATCGCATTA	58.760	29.630	0.00	0.00	31.01	1.90
628	635	9.236691	GAACATTCATTTACACAATCGCATTAT	57.763	29.630	0.00	0.00	0.00	1.28
629	636	9.585099	AACATTCATTTACACAATCGCATTATT	57.415	25.926	0.00	0.00	0.00	1.40
636	643	9.847706	ATTTACACAATCGCATTATTACAAACA	57.152	25.926	0.00	0.00	0.00	2.83
637	644	8.888332	TTACACAATCGCATTATTACAAACAG	57.112	30.769	0.00	0.00	0.00	3.16
638	645	6.321717	ACACAATCGCATTATTACAAACAGG	58.678	36.000	0.00	0.00	0.00	4.00
639	646	6.072175	ACACAATCGCATTATTACAAACAGGT	60.072	34.615	0.00	0.00	0.00	4.00
640	647	7.119992	ACACAATCGCATTATTACAAACAGGTA	59.880	33.333	0.00	0.00	0.00	3.08
641	648	7.965655	CACAATCGCATTATTACAAACAGGTAA	59.034	33.333	0.00	0.00	37.62	2.85
642	649	8.682710	ACAATCGCATTATTACAAACAGGTAAT	58.317	29.630	0.00	0.00	44.07	1.89
643	650	9.169468	CAATCGCATTATTACAAACAGGTAATC	57.831	33.333	2.15	0.00	41.68	1.75
644	651	7.851387	TCGCATTATTACAAACAGGTAATCA	57.149	32.000	2.15	0.00	41.68	2.57
645	652	7.690228	TCGCATTATTACAAACAGGTAATCAC	58.310	34.615	2.15	0.00	41.68	3.06
646	653	7.334671	TCGCATTATTACAAACAGGTAATCACA	59.665	33.333	2.15	0.00	41.68	3.58
647	654	7.965655	CGCATTATTACAAACAGGTAATCACAA	59.034	33.333	2.15	0.00	41.68	3.33
648	655	9.289303	GCATTATTACAAACAGGTAATCACAAG	57.711	33.333	2.15	0.00	41.68	3.16
649	656	9.289303	CATTATTACAAACAGGTAATCACAAGC	57.711	33.333	2.15	0.00	41.68	4.01
650	657	8.630054	TTATTACAAACAGGTAATCACAAGCT	57.370	30.769	2.15	0.00	41.68	3.74
651	658	9.727859	TTATTACAAACAGGTAATCACAAGCTA	57.272	29.630	2.15	0.00	41.68	3.32
652	659	8.630054	ATTACAAACAGGTAATCACAAGCTAA	57.370	30.769	0.00	0.00	39.17	3.09
653	660	6.313744	ACAAACAGGTAATCACAAGCTAAC	57.686	37.500	0.00	0.00	0.00	2.34
654	661	5.049680	ACAAACAGGTAATCACAAGCTAACG	60.050	40.000	0.00	0.00	0.00	3.18
655	662	4.267349	ACAGGTAATCACAAGCTAACGT	57.733	40.909	0.00	0.00	0.00	3.99
656	663	5.395682	ACAGGTAATCACAAGCTAACGTA	57.604	39.130	0.00	0.00	0.00	3.57
657	664	5.166398	ACAGGTAATCACAAGCTAACGTAC	58.834	41.667	0.00	0.00	0.00	3.67
658	665	5.047519	ACAGGTAATCACAAGCTAACGTACT	60.048	40.000	0.00	0.00	0.00	2.73
659	666	6.151648	ACAGGTAATCACAAGCTAACGTACTA	59.848	38.462	0.00	0.00	0.00	1.82
660	667	6.691818	CAGGTAATCACAAGCTAACGTACTAG	59.308	42.308	0.00	0.00	0.00	2.57
661	668	6.600822	AGGTAATCACAAGCTAACGTACTAGA	59.399	38.462	0.00	0.00	0.00	2.43
662	669	7.121759	AGGTAATCACAAGCTAACGTACTAGAA	59.878	37.037	0.00	0.00	0.00	2.10
663	670	7.919621	GGTAATCACAAGCTAACGTACTAGAAT	59.080	37.037	0.00	0.00	0.00	2.40
664	671	9.941664	GTAATCACAAGCTAACGTACTAGAATA	57.058	33.333	0.00	0.00	0.00	1.75
691	698	4.877882	CGTTGCAACGCACGTGCA	62.878	61.111	35.89	17.31	46.06	4.57
692	699	2.353376	GTTGCAACGCACGTGCAT	60.353	55.556	37.03	23.73	38.71	3.96
693	700	1.943693	GTTGCAACGCACGTGCATT	60.944	52.632	37.03	28.37	38.71	3.56
694	701	0.658829	GTTGCAACGCACGTGCATTA	60.659	50.000	37.03	14.54	38.71	1.90
695	702	0.239613	TTGCAACGCACGTGCATTAT	59.760	45.000	37.03	18.35	38.71	1.28
696	703	0.239613	TGCAACGCACGTGCATTATT	59.760	45.000	37.03	22.71	42.21	1.40
697	704	0.907171	GCAACGCACGTGCATTATTC	59.093	50.000	37.03	18.33	42.21	1.75
698	705	1.465689	GCAACGCACGTGCATTATTCT	60.466	47.619	37.03	6.63	42.21	2.40
699	706	2.222931	GCAACGCACGTGCATTATTCTA	60.223	45.455	37.03	0.00	42.21	2.10
700	707	3.597324	CAACGCACGTGCATTATTCTAG	58.403	45.455	37.03	20.86	42.21	2.43
701	708	2.888594	ACGCACGTGCATTATTCTAGT	58.111	42.857	37.03	21.51	42.21	2.57
702	709	4.036567	ACGCACGTGCATTATTCTAGTA	57.963	40.909	37.03	0.00	42.21	1.82
703	710	4.617959	ACGCACGTGCATTATTCTAGTAT	58.382	39.130	37.03	2.71	42.21	2.12
704	711	5.047847	ACGCACGTGCATTATTCTAGTATT	58.952	37.500	37.03	2.01	42.21	1.89
705	712	6.210796	ACGCACGTGCATTATTCTAGTATTA	58.789	36.000	37.03	0.00	42.21	0.98
706	713	6.698329	ACGCACGTGCATTATTCTAGTATTAA	59.302	34.615	37.03	0.00	42.21	1.40
707	714	7.223193	ACGCACGTGCATTATTCTAGTATTAAA	59.777	33.333	37.03	0.00	42.21	1.52
708	715	8.059502	CGCACGTGCATTATTCTAGTATTAAAA	58.940	33.333	37.03	0.00	42.21	1.52
709	716	9.710979	GCACGTGCATTATTCTAGTATTAAAAA	57.289	29.630	34.52	0.00	41.59	1.94
748	755	4.419522	TTTTGATTTACAAGCTCGGAGC	57.580	40.909	22.13	22.13	42.84	4.70
1170	1189	4.489771	GGGATGGGCCTGGTGTCG	62.490	72.222	4.53	0.00	36.66	4.35
1201	1220	1.790387	GACGTGGACGCGTACTACT	59.210	57.895	24.23	3.83	45.79	2.57
1210	1229	1.823041	GCGTACTACTCCCGGCTCT	60.823	63.158	0.00	0.00	0.00	4.09
1449	1468	3.343421	AAAGAACGTGCCGGCGTC	61.343	61.111	23.90	16.53	45.00	5.19
1888	1907	0.187851	TTCGATACTCCCCTCTCCCC	59.812	60.000	0.00	0.00	0.00	4.81
1889	1908	0.997307	TCGATACTCCCCTCTCCCCA	60.997	60.000	0.00	0.00	0.00	4.96
1890	1909	0.828343	CGATACTCCCCTCTCCCCAC	60.828	65.000	0.00	0.00	0.00	4.61
1891	1910	0.563672	GATACTCCCCTCTCCCCACT	59.436	60.000	0.00	0.00	0.00	4.00
1892	1911	1.027815	ATACTCCCCTCTCCCCACTT	58.972	55.000	0.00	0.00	0.00	3.16
1893	1912	0.797579	TACTCCCCTCTCCCCACTTT	59.202	55.000	0.00	0.00	0.00	2.66
1894	1913	0.103876	ACTCCCCTCTCCCCACTTTT	60.104	55.000	0.00	0.00	0.00	2.27
1895	1914	1.076438	CTCCCCTCTCCCCACTTTTT	58.924	55.000	0.00	0.00	0.00	1.94
1896	1915	1.004862	CTCCCCTCTCCCCACTTTTTC	59.995	57.143	0.00	0.00	0.00	2.29
1897	1916	0.777446	CCCCTCTCCCCACTTTTTCA	59.223	55.000	0.00	0.00	0.00	2.69
1898	1917	1.359130	CCCCTCTCCCCACTTTTTCAT	59.641	52.381	0.00	0.00	0.00	2.57
1899	1918	2.450476	CCCTCTCCCCACTTTTTCATG	58.550	52.381	0.00	0.00	0.00	3.07
1923	1942	8.725405	TGACGGATTTGCTATTTTACATCTAA	57.275	30.769	0.00	0.00	0.00	2.10
2013	2033	0.907704	TGATCCTGTGGTTACCCGCT	60.908	55.000	0.00	0.00	42.08	5.52
2037	2057	4.814771	TCGTATTTGTCTCGCTGATCTAGA	59.185	41.667	0.00	0.00	0.00	2.43
2038	2058	5.050023	TCGTATTTGTCTCGCTGATCTAGAG	60.050	44.000	0.00	0.40	0.00	2.43
2040	2060	2.044123	TGTCTCGCTGATCTAGAGCA	57.956	50.000	10.81	10.81	36.12	4.26
2041	2061	2.580962	TGTCTCGCTGATCTAGAGCAT	58.419	47.619	11.80	0.00	36.12	3.79
2042	2062	3.744660	TGTCTCGCTGATCTAGAGCATA	58.255	45.455	11.80	0.00	36.12	3.14
2043	2063	4.137543	TGTCTCGCTGATCTAGAGCATAA	58.862	43.478	11.80	0.00	36.12	1.90
2044	2064	4.764308	TGTCTCGCTGATCTAGAGCATAAT	59.236	41.667	11.80	0.00	36.12	1.28
2046	2066	5.572511	GTCTCGCTGATCTAGAGCATAATTG	59.427	44.000	11.80	0.19	36.12	2.32
2047	2067	4.814147	TCGCTGATCTAGAGCATAATTGG	58.186	43.478	11.80	0.00	36.12	3.16
2049	2069	4.993584	CGCTGATCTAGAGCATAATTGGTT	59.006	41.667	11.80	0.00	36.12	3.67
2050	2070	5.468072	CGCTGATCTAGAGCATAATTGGTTT	59.532	40.000	11.80	0.00	36.12	3.27
2051	2071	6.565435	CGCTGATCTAGAGCATAATTGGTTTG	60.565	42.308	11.80	0.00	36.12	2.93
2052	2072	6.624352	TGATCTAGAGCATAATTGGTTTGC	57.376	37.500	6.59	0.00	32.62	3.68
2054	2074	7.508687	TGATCTAGAGCATAATTGGTTTGCTA	58.491	34.615	6.59	0.00	46.21	3.49
2055	2075	7.442364	TGATCTAGAGCATAATTGGTTTGCTAC	59.558	37.037	6.59	3.20	46.21	3.58
2056	2076	6.055588	TCTAGAGCATAATTGGTTTGCTACC	58.944	40.000	6.90	2.04	46.21	3.18
2108	2128	5.600908	CCAACATTTGGCAAAATCAGAAG	57.399	39.130	17.70	3.78	45.17	2.85
2109	2129	5.058490	CCAACATTTGGCAAAATCAGAAGT	58.942	37.500	17.70	4.62	45.17	3.01
2110	2130	5.528320	CCAACATTTGGCAAAATCAGAAGTT	59.472	36.000	17.70	9.90	45.17	2.66
2111	2131	6.423862	CAACATTTGGCAAAATCAGAAGTTG	58.576	36.000	17.70	16.48	33.59	3.16
2112	2132	4.512571	ACATTTGGCAAAATCAGAAGTTGC	59.487	37.500	17.70	11.38	45.48	4.17
2117	2137	3.456280	GCAAAATCAGAAGTTGCCAACA	58.544	40.909	10.69	0.00	41.41	3.33
2118	2138	4.060205	GCAAAATCAGAAGTTGCCAACAT	58.940	39.130	10.69	0.00	41.41	2.71
2119	2139	4.512571	GCAAAATCAGAAGTTGCCAACATT	59.487	37.500	10.69	1.29	41.41	2.71
2120	2140	5.007921	GCAAAATCAGAAGTTGCCAACATTT	59.992	36.000	10.69	3.88	41.41	2.32
2121	2141	6.423862	CAAAATCAGAAGTTGCCAACATTTG	58.576	36.000	10.69	3.62	0.00	2.32
2134	2154	5.159399	CCAACATTTGGCAACTTTCTTTG	57.841	39.130	0.00	0.00	45.17	2.77
2135	2155	4.874966	CCAACATTTGGCAACTTTCTTTGA	59.125	37.500	0.00	0.00	45.17	2.69
2136	2156	5.006941	CCAACATTTGGCAACTTTCTTTGAG	59.993	40.000	0.00	0.00	45.17	3.02
2137	2157	5.596836	ACATTTGGCAACTTTCTTTGAGA	57.403	34.783	0.00	0.00	37.61	3.27
2138	2158	6.165700	ACATTTGGCAACTTTCTTTGAGAT	57.834	33.333	0.00	0.00	37.61	2.75
2139	2159	6.585416	ACATTTGGCAACTTTCTTTGAGATT	58.415	32.000	0.00	0.00	37.61	2.40
2140	2160	6.480981	ACATTTGGCAACTTTCTTTGAGATTG	59.519	34.615	0.00	0.00	37.61	2.67
2141	2161	5.850557	TTGGCAACTTTCTTTGAGATTGA	57.149	34.783	0.00	0.00	37.61	2.57
2142	2162	5.186996	TGGCAACTTTCTTTGAGATTGAC	57.813	39.130	0.00	0.00	37.61	3.18
2143	2163	4.644234	TGGCAACTTTCTTTGAGATTGACA	59.356	37.500	0.00	0.00	32.76	3.58
2144	2164	5.126869	TGGCAACTTTCTTTGAGATTGACAA	59.873	36.000	0.00	0.00	32.27	3.18
2145	2165	6.183360	TGGCAACTTTCTTTGAGATTGACAAT	60.183	34.615	0.00	0.00	32.27	2.71
2146	2166	7.014134	TGGCAACTTTCTTTGAGATTGACAATA	59.986	33.333	0.00	0.00	32.27	1.90
2147	2167	7.867403	GGCAACTTTCTTTGAGATTGACAATAA	59.133	33.333	0.00	0.00	0.00	1.40
2148	2168	9.248291	GCAACTTTCTTTGAGATTGACAATAAA	57.752	29.630	0.00	0.00	0.00	1.40
2155	2175	9.206870	TCTTTGAGATTGACAATAAAAATTGGC	57.793	29.630	0.00	0.29	39.94	4.52
2156	2176	8.899427	TTTGAGATTGACAATAAAAATTGGCA	57.101	26.923	0.00	2.53	46.90	4.92
2162	2182	6.297694	TGACAATAAAAATTGGCAAGCAAC	57.702	33.333	5.96	0.00	45.71	4.17
2163	2183	5.238214	TGACAATAAAAATTGGCAAGCAACC	59.762	36.000	5.96	0.00	45.71	3.77
2164	2184	5.128919	ACAATAAAAATTGGCAAGCAACCA	58.871	33.333	5.96	0.00	35.93	3.67
2165	2185	8.545984	TGACAATAAAAATTGGCAAGCAACCAA	61.546	33.333	5.96	7.45	45.71	3.67
2170	2190	1.999648	TTGGCAAGCAACCAATCTCT	58.000	45.000	0.00	0.00	42.23	3.10
2171	2191	2.877097	TGGCAAGCAACCAATCTCTA	57.123	45.000	0.00	0.00	33.12	2.43
2172	2192	2.715046	TGGCAAGCAACCAATCTCTAG	58.285	47.619	0.00	0.00	33.12	2.43
2173	2193	1.403323	GGCAAGCAACCAATCTCTAGC	59.597	52.381	0.00	0.00	0.00	3.42
2174	2194	1.403323	GCAAGCAACCAATCTCTAGCC	59.597	52.381	0.00	0.00	0.00	3.93
2175	2195	2.715046	CAAGCAACCAATCTCTAGCCA	58.285	47.619	0.00	0.00	0.00	4.75
2176	2196	3.084039	CAAGCAACCAATCTCTAGCCAA	58.916	45.455	0.00	0.00	0.00	4.52
2177	2197	3.659183	AGCAACCAATCTCTAGCCAAT	57.341	42.857	0.00	0.00	0.00	3.16
2178	2198	4.778213	AGCAACCAATCTCTAGCCAATA	57.222	40.909	0.00	0.00	0.00	1.90
2179	2199	5.316158	AGCAACCAATCTCTAGCCAATAT	57.684	39.130	0.00	0.00	0.00	1.28
2180	2200	5.699143	AGCAACCAATCTCTAGCCAATATT	58.301	37.500	0.00	0.00	0.00	1.28
2181	2201	6.131961	AGCAACCAATCTCTAGCCAATATTT	58.868	36.000	0.00	0.00	0.00	1.40
2182	2202	6.040166	AGCAACCAATCTCTAGCCAATATTTG	59.960	38.462	0.00	0.00	0.00	2.32
2349	4204	2.890945	GGCCAGGAGTTACAACAAACAT	59.109	45.455	0.00	0.00	0.00	2.71
2372	4227	1.722011	AATTACAGCGGTCAGAACGG	58.278	50.000	10.56	0.00	0.00	4.44
2400	4256	1.474498	GGGAACACTGGACTGAAACGT	60.474	52.381	0.00	0.00	0.00	3.99
2491	4348	7.666388	ACTCCACACTAGGATCATATGTAGTAC	59.334	40.741	1.90	0.00	36.99	2.73
2572	4429	2.841442	AGAGAAGAAGGGGAACAACG	57.159	50.000	0.00	0.00	0.00	4.10
2686	4543	1.078143	GAAGAATGCCGCCCTCACT	60.078	57.895	0.00	0.00	0.00	3.41
2690	4547	4.530857	ATGCCGCCCTCACTACGC	62.531	66.667	0.00	0.00	0.00	4.42
2727	4584	1.947456	GGCCACTTCGATTTGGGATAC	59.053	52.381	13.29	0.00	33.01	2.24
2768	4625	1.191535	CGGTCCATGTCCAACTAGGA	58.808	55.000	0.00	0.00	46.75	2.94
3082	4939	3.582120	CAACACGCACCAACGCCT	61.582	61.111	0.00	0.00	36.19	5.52
3157	5014	2.781681	GAGGGATTTCGAACCTCCAA	57.218	50.000	21.53	0.00	43.93	3.53
3414	5272	2.812619	GCGAGGGGATGAAGGGAGG	61.813	68.421	0.00	0.00	0.00	4.30
4431	6438	4.265056	GTCGGTGCCCCCAGTTGT	62.265	66.667	0.00	0.00	0.00	3.32
4590	7436	4.994852	GCAACTAGAGGTGTATGTGTTTGA	59.005	41.667	0.00	0.00	0.00	2.69
4606	7452	1.174078	TTGACGACGGTCCACAGCTA	61.174	55.000	1.91	0.00	42.73	3.32
4654	7500	0.454285	GTGTGTGTGTGTGTGTGTGC	60.454	55.000	0.00	0.00	0.00	4.57
4656	7502	2.277247	GTGTGTGTGTGTGTGCGC	60.277	61.111	0.00	0.00	0.00	6.09
4691	7537	1.225426	GATCCCCAGCTGCATGTCA	59.775	57.895	8.66	0.00	0.00	3.58
4827	7675	0.322277	AGTCGACTCGCAACTAGGGA	60.322	55.000	13.58	0.00	37.64	4.20
4838	7686	0.991920	AACTAGGGATGTGTGTGGGG	59.008	55.000	0.00	0.00	0.00	4.96
4853	7701	2.222013	GGGGTTTGTCGAGGGTCCT	61.222	63.158	0.00	0.00	0.00	3.85
4982	8064	2.594303	CCCAGTTGCAAGCCGACA	60.594	61.111	0.00	0.00	0.00	4.35
4983	8065	2.620112	CCCAGTTGCAAGCCGACAG	61.620	63.158	0.00	0.00	0.00	3.51
5010	8168	0.889186	GCAACTAGGGGTGTGTGTGG	60.889	60.000	0.00	0.00	0.00	4.17
5017	8175	1.388837	GGGGTGTGTGTGGGTTTGTC	61.389	60.000	0.00	0.00	0.00	3.18
5464	9508	0.034896	AACTCGCAACTAGGGTGTGG	59.965	55.000	8.78	3.89	37.05	4.17
5696	10047	1.657181	CAAGGGCGCGTGTGTTTTC	60.657	57.895	8.43	0.00	0.00	2.29
5730	10141	0.828022	TTTGTAGGCCGACCATCGAT	59.172	50.000	13.95	0.00	43.74	3.59
5892	10330	4.966787	TTGCAAGTCCACCCCCGC	62.967	66.667	0.00	0.00	0.00	6.13
5991	10442	0.550914	TCCCAGTTGCAAGTTCACCT	59.449	50.000	3.38	0.00	0.00	4.00
6030	10541	6.865205	GGTATCGTAGTTTTGTGTAGTTGTCT	59.135	38.462	0.00	0.00	0.00	3.41
6144	10655	7.359595	ACACATATATTAAATGCGCAACGAAT	58.640	30.769	17.11	16.05	0.00	3.34
6207	10722	8.491950	GTTGTAAAATTTTAAACGCATGGTGAT	58.508	29.630	12.14	0.00	0.00	3.06
6728	11329	4.390603	TCACGATGTAAAATTTCCCGACAG	59.609	41.667	0.00	0.00	0.00	3.51
6739	11340	5.622770	ATTTCCCGACAGACAAACAATAC	57.377	39.130	0.00	0.00	0.00	1.89
6855	11456	8.525290	TTTTTCTGAAGATGAAGAAACCTCTT	57.475	30.769	0.00	0.00	44.93	2.85
6856	11457	7.502120	TTTCTGAAGATGAAGAAACCTCTTG	57.498	36.000	0.00	0.00	42.19	3.02
6857	11458	6.425210	TCTGAAGATGAAGAAACCTCTTGA	57.575	37.500	0.00	0.00	42.19	3.02
7359	12239	9.464714	TTCTTCTTACTATTCGCTAATGATCAC	57.535	33.333	0.00	0.00	0.00	3.06
7361	12241	8.803201	TTCTTACTATTCGCTAATGATCACTG	57.197	34.615	0.00	0.00	0.00	3.66
7364	12244	4.747108	ACTATTCGCTAATGATCACTGTGC	59.253	41.667	0.00	0.00	0.00	4.57
7365	12245	1.559831	TCGCTAATGATCACTGTGCG	58.440	50.000	20.66	20.66	42.70	5.34
7367	12247	1.926510	CGCTAATGATCACTGTGCGAA	59.073	47.619	21.57	0.00	43.81	4.70
7368	12248	2.285256	CGCTAATGATCACTGTGCGAAC	60.285	50.000	21.57	0.00	43.81	3.95
7369	12249	2.030946	GCTAATGATCACTGTGCGAACC	59.969	50.000	0.00	0.00	0.00	3.62
7370	12250	2.479566	AATGATCACTGTGCGAACCT	57.520	45.000	0.00	0.00	0.00	3.50
7371	12251	2.015736	ATGATCACTGTGCGAACCTC	57.984	50.000	0.00	0.00	0.00	3.85
7372	12252	0.969149	TGATCACTGTGCGAACCTCT	59.031	50.000	2.12	0.00	0.00	3.69
7373	12253	1.344438	TGATCACTGTGCGAACCTCTT	59.656	47.619	2.12	0.00	0.00	2.85
7374	12254	1.728971	GATCACTGTGCGAACCTCTTG	59.271	52.381	2.12	0.00	0.00	3.02
7375	12255	0.750249	TCACTGTGCGAACCTCTTGA	59.250	50.000	2.12	0.00	0.00	3.02
7376	12256	1.138069	TCACTGTGCGAACCTCTTGAA	59.862	47.619	2.12	0.00	0.00	2.69
7377	12257	1.939934	CACTGTGCGAACCTCTTGAAA	59.060	47.619	0.00	0.00	0.00	2.69
7378	12258	2.549754	CACTGTGCGAACCTCTTGAAAT	59.450	45.455	0.00	0.00	0.00	2.17
7379	12259	3.745975	CACTGTGCGAACCTCTTGAAATA	59.254	43.478	0.00	0.00	0.00	1.40
7527	12407	1.372872	CGTGTCGGTGTGCATCAGA	60.373	57.895	0.00	0.00	0.00	3.27
7656	12536	2.726821	TCCAAGCTGGGTCATGAATTC	58.273	47.619	7.13	0.00	38.32	2.17
7669	12549	8.956426	TGGGTCATGAATTCTAAGTTAAATGTC	58.044	33.333	7.05	0.00	0.00	3.06
7717	12597	3.583882	ATGCAACCTCAACCCCCGG	62.584	63.158	0.00	0.00	0.00	5.73
7799	12679	0.179004	TGAACGCAACCAAGGTCCAT	60.179	50.000	0.00	0.00	0.00	3.41
7847	12727	9.166173	TCAGAGACATTTGTATAATTCACTTGG	57.834	33.333	0.00	0.00	0.00	3.61
7891	12771	6.053632	TCTTTCTGATGCATGAAACCTCTA	57.946	37.500	2.46	0.00	0.00	2.43
8038	12918	8.527810	TGCTTATTTATGTTCCAAAAAGTAGGG	58.472	33.333	0.00	0.00	0.00	3.53
8048	12928	6.926630	TCCAAAAAGTAGGGCATTTTGTAT	57.073	33.333	8.76	0.00	41.50	2.29
8052	12932	7.759433	CCAAAAAGTAGGGCATTTTGTATGTAG	59.241	37.037	8.76	0.00	41.50	2.74
8053	12933	8.519526	CAAAAAGTAGGGCATTTTGTATGTAGA	58.480	33.333	0.00	0.00	39.52	2.59
8100	12990	5.877012	ACATGTTACCATCAGTTGTGATCTC	59.123	40.000	0.00	0.00	41.85	2.75
8126	13016	0.606604	TTACAGAACCCAGAGTCGGC	59.393	55.000	0.00	0.00	0.00	5.54
8140	13030	3.438087	AGAGTCGGCAGTTGATCAATTTG	59.562	43.478	12.12	13.90	0.00	2.32
8151	13041	0.521291	ATCAATTTGACACGGTGCGG	59.479	50.000	8.30	0.00	0.00	5.69
8190	13080	3.304257	ACGAAGTACACGTTGGTGAGTAG	60.304	47.826	11.27	0.00	43.78	2.57
8221	13111	5.925907	GCAAATGCAAAATACAAACCGAAT	58.074	33.333	0.00	0.00	41.59	3.34
8244	13134	1.413077	GGCACACCCTATACACTCCTC	59.587	57.143	0.00	0.00	0.00	3.71
8255	13145	5.010516	CCTATACACTCCTCACTCATTCCTG	59.989	48.000	0.00	0.00	0.00	3.86
8259	13149	3.260380	CACTCCTCACTCATTCCTGTCTT	59.740	47.826	0.00	0.00	0.00	3.01
8268	13158	4.184629	CTCATTCCTGTCTTCCCTTTACG	58.815	47.826	0.00	0.00	0.00	3.18
8270	13160	4.773674	TCATTCCTGTCTTCCCTTTACGTA	59.226	41.667	0.00	0.00	0.00	3.57
8332	13222	5.163364	ACAAAATTCAGTGGTGGTATTTGCA	60.163	36.000	0.00	0.00	0.00	4.08
8344	13234	3.834813	TGGTATTTGCACCATTTAAGCCA	59.165	39.130	0.00	0.00	43.76	4.75
8346	13236	4.810491	GGTATTTGCACCATTTAAGCCATG	59.190	41.667	0.00	0.00	38.55	3.66
8348	13238	3.591196	TTGCACCATTTAAGCCATGAC	57.409	42.857	0.00	0.00	0.00	3.06
8366	13256	6.479001	GCCATGACGTGTGTTCTATTTATAGT	59.521	38.462	0.00	0.00	0.00	2.12
8367	13257	7.650504	GCCATGACGTGTGTTCTATTTATAGTA	59.349	37.037	0.00	0.00	0.00	1.82
8368	13258	9.692749	CCATGACGTGTGTTCTATTTATAGTAT	57.307	33.333	0.00	0.00	0.00	2.12
8393	13283	3.774766	TGTATGTGATTAGAGCAGGTGGT	59.225	43.478	0.00	0.00	0.00	4.16
8396	13286	2.840038	TGTGATTAGAGCAGGTGGTCAT	59.160	45.455	11.53	0.00	44.42	3.06
8397	13287	4.030216	TGTGATTAGAGCAGGTGGTCATA	58.970	43.478	11.53	0.00	44.42	2.15
8398	13288	4.655649	TGTGATTAGAGCAGGTGGTCATAT	59.344	41.667	11.53	4.25	44.42	1.78
8403	13293	9.936329	TGATTAGAGCAGGTGGTCATATATATA	57.064	33.333	11.53	0.00	44.42	0.86
8413	13303	9.326413	AGGTGGTCATATATATATTTTTAGCGC	57.674	33.333	0.00	0.00	0.00	5.92
8414	13304	9.104965	GGTGGTCATATATATATTTTTAGCGCA	57.895	33.333	11.47	0.00	0.00	6.09
8415	13305	9.916397	GTGGTCATATATATATTTTTAGCGCAC	57.084	33.333	11.47	0.00	0.00	5.34
8438	13329	1.473434	GGAAGGTGGCATAGTCTTCGG	60.473	57.143	12.89	0.00	37.18	4.30
8439	13330	1.480954	GAAGGTGGCATAGTCTTCGGA	59.519	52.381	0.00	0.00	0.00	4.55
8453	13344	2.943690	TCTTCGGATAGACTCTTCACCG	59.056	50.000	0.00	0.00	41.39	4.94
8458	13349	0.824759	ATAGACTCTTCACCGCCCAC	59.175	55.000	0.00	0.00	0.00	4.61
8463	13354	3.423154	CTTCACCGCCCACTTCGC	61.423	66.667	0.00	0.00	0.00	4.70
8468	13359	2.046700	CCGCCCACTTCGCCTTAA	60.047	61.111	0.00	0.00	0.00	1.85
8474	13365	2.851195	CCCACTTCGCCTTAAGCATAT	58.149	47.619	0.00	0.00	44.04	1.78
8475	13366	3.805807	GCCCACTTCGCCTTAAGCATATA	60.806	47.826	0.00	0.00	44.04	0.86
8478	13369	5.812642	CCCACTTCGCCTTAAGCATATATAG	59.187	44.000	0.00	0.00	44.04	1.31
8480	13371	6.398918	CACTTCGCCTTAAGCATATATAGGT	58.601	40.000	0.00	0.00	44.04	3.08
8482	13373	7.387948	CACTTCGCCTTAAGCATATATAGGTTT	59.612	37.037	0.00	2.11	44.04	3.27
8483	13374	8.591072	ACTTCGCCTTAAGCATATATAGGTTTA	58.409	33.333	0.00	0.26	44.04	2.01
8484	13375	9.431887	CTTCGCCTTAAGCATATATAGGTTTAA	57.568	33.333	13.47	13.47	44.04	1.52
8485	13376	9.953565	TTCGCCTTAAGCATATATAGGTTTAAT	57.046	29.630	14.23	0.00	44.04	1.40
8486	13377	9.595823	TCGCCTTAAGCATATATAGGTTTAATC	57.404	33.333	14.23	9.78	44.04	1.75
8487	13378	9.601217	CGCCTTAAGCATATATAGGTTTAATCT	57.399	33.333	14.23	0.00	44.04	2.40
8504	13414	4.928661	AATCTCGTATGACTTTGTGTGC	57.071	40.909	0.00	0.00	0.00	4.57
8506	13416	2.030628	TCTCGTATGACTTTGTGTGCGA	60.031	45.455	0.00	0.00	0.00	5.10
8507	13417	2.324860	TCGTATGACTTTGTGTGCGAG	58.675	47.619	0.00	0.00	0.00	5.03
8519	13429	1.007580	TGTGCGAGCGTTGTGTTTTA	58.992	45.000	0.00	0.00	0.00	1.52
8520	13430	1.397343	TGTGCGAGCGTTGTGTTTTAA	59.603	42.857	0.00	0.00	0.00	1.52
8533	13443	6.238266	CGTTGTGTTTTAACTGTGTACATCCT	60.238	38.462	0.00	0.00	0.00	3.24
8535	13445	8.614346	GTTGTGTTTTAACTGTGTACATCCTAA	58.386	33.333	0.00	0.00	0.00	2.69
8546	13456	7.069950	ACTGTGTACATCCTAATTATGCAGAGA	59.930	37.037	0.00	0.00	0.00	3.10
8547	13457	7.210174	TGTGTACATCCTAATTATGCAGAGAC	58.790	38.462	0.00	0.00	0.00	3.36
8549	13459	8.577296	GTGTACATCCTAATTATGCAGAGACTA	58.423	37.037	0.00	0.00	0.00	2.59
8550	13460	8.797438	TGTACATCCTAATTATGCAGAGACTAG	58.203	37.037	0.00	0.00	0.00	2.57
8552	13462	5.730296	TCCTAATTATGCAGAGACTAGGC	57.270	43.478	0.00	0.00	0.00	3.93
8560	13470	1.335506	GCAGAGACTAGGCGTATGCTC	60.336	57.143	13.51	5.09	42.25	4.26
8567	13477	4.585162	AGACTAGGCGTATGCTCTTTATGT	59.415	41.667	6.92	0.00	42.25	2.29
8573	13483	5.878116	AGGCGTATGCTCTTTATGTTTGTAA	59.122	36.000	6.92	0.00	42.25	2.41
8574	13484	6.542370	AGGCGTATGCTCTTTATGTTTGTAAT	59.458	34.615	6.92	0.00	42.25	1.89
8575	13485	7.067008	AGGCGTATGCTCTTTATGTTTGTAATT	59.933	33.333	6.92	0.00	42.25	1.40
8576	13486	7.165812	GGCGTATGCTCTTTATGTTTGTAATTG	59.834	37.037	6.92	0.00	42.25	2.32
8577	13487	7.696453	GCGTATGCTCTTTATGTTTGTAATTGT	59.304	33.333	0.00	0.00	38.39	2.71
8578	13488	9.210426	CGTATGCTCTTTATGTTTGTAATTGTC	57.790	33.333	0.00	0.00	0.00	3.18
8580	13490	6.083630	TGCTCTTTATGTTTGTAATTGTCGC	58.916	36.000	0.00	0.00	0.00	5.19
8581	13491	6.083630	GCTCTTTATGTTTGTAATTGTCGCA	58.916	36.000	0.00	0.00	0.00	5.10
8582	13492	6.747280	GCTCTTTATGTTTGTAATTGTCGCAT	59.253	34.615	0.00	0.00	0.00	4.73
8584	13494	9.210426	CTCTTTATGTTTGTAATTGTCGCATAC	57.790	33.333	0.00	0.00	0.00	2.39
8630	13540	9.803315	AAAGTGACCTTTATTGAAAAAGAAGTC	57.197	29.630	0.00	0.00	39.13	3.01
8631	13541	7.639945	AGTGACCTTTATTGAAAAAGAAGTCG	58.360	34.615	0.00	0.00	38.50	4.18
8634	13544	5.300792	ACCTTTATTGAAAAAGAAGTCGCCA	59.699	36.000	0.00	0.00	38.50	5.69
8635	13545	5.858581	CCTTTATTGAAAAAGAAGTCGCCAG	59.141	40.000	0.00	0.00	38.50	4.85
8637	13547	3.691049	TTGAAAAAGAAGTCGCCAGTG	57.309	42.857	0.00	0.00	0.00	3.66
8638	13548	1.333619	TGAAAAAGAAGTCGCCAGTGC	59.666	47.619	0.00	0.00	0.00	4.40
8659	13569	3.602062	GCGTTTGATATGTTGTTTGACCG	59.398	43.478	0.00	0.00	0.00	4.79
8662	13572	5.732647	CGTTTGATATGTTGTTTGACCGATC	59.267	40.000	0.00	0.00	0.00	3.69
8668	13578	2.143122	GTTGTTTGACCGATCTGCTGA	58.857	47.619	0.00	0.00	0.00	4.26
8670	13580	2.844946	TGTTTGACCGATCTGCTGAAA	58.155	42.857	0.00	0.00	0.00	2.69
8680	13590	5.647658	ACCGATCTGCTGAAAATTATGTTGA	59.352	36.000	0.00	0.00	0.00	3.18
8684	13594	7.699391	CGATCTGCTGAAAATTATGTTGACAAT	59.301	33.333	0.00	0.00	0.00	2.71
8687	13597	9.624697	TCTGCTGAAAATTATGTTGACAATAAC	57.375	29.630	0.00	0.00	0.00	1.89
8723	13633	2.200373	GGCAACTCCTAAGAAGGCAA	57.800	50.000	0.00	0.00	43.31	4.52
8724	13634	1.813178	GGCAACTCCTAAGAAGGCAAC	59.187	52.381	0.00	0.00	43.31	4.17
8726	13636	3.084786	GCAACTCCTAAGAAGGCAACAT	58.915	45.455	0.00	0.00	43.31	2.71
8727	13637	3.127721	GCAACTCCTAAGAAGGCAACATC	59.872	47.826	0.00	0.00	43.31	3.06
8728	13638	3.636153	ACTCCTAAGAAGGCAACATCC	57.364	47.619	0.00	0.00	43.31	3.51
8729	13639	3.185455	ACTCCTAAGAAGGCAACATCCT	58.815	45.455	0.00	0.00	43.31	3.24
8731	13641	3.454082	CTCCTAAGAAGGCAACATCCTCT	59.546	47.826	0.00	0.00	43.31	3.69
8734	13644	3.515602	AAGAAGGCAACATCCTCTTGT	57.484	42.857	0.00	0.00	34.82	3.16
8735	13645	4.640771	AAGAAGGCAACATCCTCTTGTA	57.359	40.909	0.00	0.00	34.82	2.41
8738	13648	6.313519	AGAAGGCAACATCCTCTTGTATTA	57.686	37.500	0.00	0.00	34.82	0.98
8751	13684	9.614792	ATCCTCTTGTATTAAAGTACATTCACC	57.385	33.333	0.00	0.00	34.76	4.02
8752	13685	8.598916	TCCTCTTGTATTAAAGTACATTCACCA	58.401	33.333	0.00	0.00	34.76	4.17
8753	13686	9.396022	CCTCTTGTATTAAAGTACATTCACCAT	57.604	33.333	0.00	0.00	34.76	3.55
8768	13701	6.980397	ACATTCACCATCAGACTTTTGTTTTC	59.020	34.615	0.00	0.00	0.00	2.29
8775	13708	6.429624	CATCAGACTTTTGTTTTCGATCACA	58.570	36.000	0.00	0.00	0.00	3.58
8782	13715	2.432444	TGTTTTCGATCACATGGACCC	58.568	47.619	0.00	0.00	0.00	4.46
8783	13716	2.224646	TGTTTTCGATCACATGGACCCA	60.225	45.455	0.00	0.00	0.00	4.51
8784	13717	2.107950	TTTCGATCACATGGACCCAC	57.892	50.000	0.00	0.00	0.00	4.61
8785	13718	0.980423	TTCGATCACATGGACCCACA	59.020	50.000	0.00	0.00	0.00	4.17
8786	13719	0.536724	TCGATCACATGGACCCACAG	59.463	55.000	0.00	0.00	0.00	3.66
8787	13720	1.091771	CGATCACATGGACCCACAGC	61.092	60.000	0.00	0.00	0.00	4.40
8788	13721	0.254178	GATCACATGGACCCACAGCT	59.746	55.000	0.00	0.00	0.00	4.24
8789	13722	0.034767	ATCACATGGACCCACAGCTG	60.035	55.000	13.48	13.48	0.00	4.24
8790	13723	1.126948	TCACATGGACCCACAGCTGA	61.127	55.000	23.35	0.00	0.00	4.26
8791	13724	0.675837	CACATGGACCCACAGCTGAG	60.676	60.000	23.35	13.32	0.00	3.35
8792	13725	1.130054	ACATGGACCCACAGCTGAGT	61.130	55.000	23.35	14.53	0.00	3.41
8793	13726	0.675837	CATGGACCCACAGCTGAGTG	60.676	60.000	23.35	9.25	39.21	3.51
8799	13732	2.839098	CACAGCTGAGTGGGGGTT	59.161	61.111	23.35	0.00	35.88	4.11
8800	13733	1.151450	CACAGCTGAGTGGGGGTTT	59.849	57.895	23.35	0.00	35.88	3.27
8801	13734	0.400213	CACAGCTGAGTGGGGGTTTA	59.600	55.000	23.35	0.00	35.88	2.01
8802	13735	1.004745	CACAGCTGAGTGGGGGTTTAT	59.995	52.381	23.35	0.00	35.88	1.40
8803	13736	1.004745	ACAGCTGAGTGGGGGTTTATG	59.995	52.381	23.35	0.00	0.00	1.90
8804	13737	1.281867	CAGCTGAGTGGGGGTTTATGA	59.718	52.381	8.42	0.00	0.00	2.15
8805	13738	1.282157	AGCTGAGTGGGGGTTTATGAC	59.718	52.381	0.00	0.00	0.00	3.06
8806	13739	2.012051	GCTGAGTGGGGGTTTATGACG	61.012	57.143	0.00	0.00	0.00	4.35
8807	13740	0.616371	TGAGTGGGGGTTTATGACGG	59.384	55.000	0.00	0.00	0.00	4.79
8808	13741	0.906775	GAGTGGGGGTTTATGACGGA	59.093	55.000	0.00	0.00	0.00	4.69
8809	13742	1.279846	GAGTGGGGGTTTATGACGGAA	59.720	52.381	0.00	0.00	0.00	4.30
8810	13743	1.920351	AGTGGGGGTTTATGACGGAAT	59.080	47.619	0.00	0.00	0.00	3.01
8811	13744	2.092592	AGTGGGGGTTTATGACGGAATC	60.093	50.000	0.00	0.00	0.00	2.52
8812	13745	1.916874	TGGGGGTTTATGACGGAATCA	59.083	47.619	0.00	0.00	43.13	2.57
8813	13746	2.294979	GGGGGTTTATGACGGAATCAC	58.705	52.381	0.00	0.00	41.24	3.06
8814	13747	2.356330	GGGGGTTTATGACGGAATCACA	60.356	50.000	0.00	0.00	41.24	3.58
8815	13748	3.551846	GGGGTTTATGACGGAATCACAT	58.448	45.455	0.00	0.00	41.24	3.21
8816	13749	3.564225	GGGGTTTATGACGGAATCACATC	59.436	47.826	0.00	0.00	41.24	3.06
8817	13750	4.196193	GGGTTTATGACGGAATCACATCA	58.804	43.478	0.00	0.00	41.24	3.07
8818	13751	4.638421	GGGTTTATGACGGAATCACATCAA	59.362	41.667	0.00	0.00	41.24	2.57
8819	13752	5.299279	GGGTTTATGACGGAATCACATCAAT	59.701	40.000	0.00	0.00	41.24	2.57
8820	13753	6.183360	GGGTTTATGACGGAATCACATCAATT	60.183	38.462	0.00	0.00	41.24	2.32
8821	13754	7.012894	GGGTTTATGACGGAATCACATCAATTA	59.987	37.037	0.00	0.00	41.24	1.40
8822	13755	8.402472	GGTTTATGACGGAATCACATCAATTAA	58.598	33.333	0.00	0.00	41.24	1.40
8823	13756	9.221775	GTTTATGACGGAATCACATCAATTAAC	57.778	33.333	0.00	0.00	41.24	2.01
8824	13757	8.731275	TTATGACGGAATCACATCAATTAACT	57.269	30.769	0.00	0.00	41.24	2.24
8825	13758	9.825109	TTATGACGGAATCACATCAATTAACTA	57.175	29.630	0.00	0.00	41.24	2.24
8826	13759	7.534085	TGACGGAATCACATCAATTAACTAC	57.466	36.000	0.00	0.00	29.99	2.73
8827	13760	7.327975	TGACGGAATCACATCAATTAACTACT	58.672	34.615	0.00	0.00	29.99	2.57
8828	13761	7.491372	TGACGGAATCACATCAATTAACTACTC	59.509	37.037	0.00	0.00	29.99	2.59
8829	13762	6.475727	ACGGAATCACATCAATTAACTACTCG	59.524	38.462	0.00	0.00	0.00	4.18
8830	13763	6.475727	CGGAATCACATCAATTAACTACTCGT	59.524	38.462	0.00	0.00	0.00	4.18
8831	13764	7.646526	CGGAATCACATCAATTAACTACTCGTA	59.353	37.037	0.00	0.00	0.00	3.43
8832	13765	8.969267	GGAATCACATCAATTAACTACTCGTAG	58.031	37.037	2.66	2.66	39.04	3.51
8833	13766	8.873215	AATCACATCAATTAACTACTCGTAGG	57.127	34.615	8.77	0.00	37.49	3.18
8834	13767	7.400599	TCACATCAATTAACTACTCGTAGGT	57.599	36.000	8.77	4.58	37.49	3.08
8835	13768	7.478322	TCACATCAATTAACTACTCGTAGGTC	58.522	38.462	8.77	0.00	37.49	3.85
8836	13769	7.338703	TCACATCAATTAACTACTCGTAGGTCT	59.661	37.037	8.77	0.00	37.49	3.85
8837	13770	8.618677	CACATCAATTAACTACTCGTAGGTCTA	58.381	37.037	8.77	0.00	37.49	2.59
8838	13771	8.838365	ACATCAATTAACTACTCGTAGGTCTAG	58.162	37.037	8.77	0.00	37.49	2.43
8839	13772	7.256756	TCAATTAACTACTCGTAGGTCTAGC	57.743	40.000	8.77	0.00	37.49	3.42
8840	13773	6.825213	TCAATTAACTACTCGTAGGTCTAGCA	59.175	38.462	8.77	0.00	37.49	3.49
8841	13774	7.501559	TCAATTAACTACTCGTAGGTCTAGCAT	59.498	37.037	8.77	0.00	37.49	3.79
8842	13775	7.820578	ATTAACTACTCGTAGGTCTAGCATT	57.179	36.000	8.77	0.00	37.49	3.56
8843	13776	7.636150	TTAACTACTCGTAGGTCTAGCATTT	57.364	36.000	8.77	0.00	37.49	2.32
8844	13777	6.527057	AACTACTCGTAGGTCTAGCATTTT	57.473	37.500	8.77	0.00	37.49	1.82
8845	13778	6.527057	ACTACTCGTAGGTCTAGCATTTTT	57.473	37.500	8.77	0.00	37.49	1.94
8846	13779	6.331061	ACTACTCGTAGGTCTAGCATTTTTG	58.669	40.000	8.77	0.00	37.49	2.44
8847	13780	3.933332	ACTCGTAGGTCTAGCATTTTTGC	59.067	43.478	0.00	0.00	0.00	3.68
8848	13781	9.192154	ACTACTCGTAGGTCTAGCATTTTTGCT	62.192	40.741	5.71	5.71	41.63	3.91
8849	13782	5.105473	ACTCGTAGGTCTAGCATTTTTGCTA	60.105	40.000	7.41	7.41	44.28	3.49
8854	13787	6.927294	AGGTCTAGCATTTTTGCTACATAC	57.073	37.500	3.66	3.58	44.28	2.39
8877	13810	7.410800	ACATGTGCAAATTTTCATGTAGTTG	57.589	32.000	21.47	7.08	45.58	3.16
8879	13812	7.874016	ACATGTGCAAATTTTCATGTAGTTGAT	59.126	29.630	21.47	5.79	45.58	2.57
8881	13814	6.145858	TGTGCAAATTTTCATGTAGTTGATGC	59.854	34.615	0.00	6.42	30.80	3.91
8885	13818	7.318141	CAAATTTTCATGTAGTTGATGCTCCT	58.682	34.615	0.00	0.00	0.00	3.69
8908	13845	1.021202	TTTCTTGAACTGCACGTGGG	58.979	50.000	18.88	0.00	0.00	4.61
8911	13848	1.507141	CTTGAACTGCACGTGGGTCC	61.507	60.000	18.88	0.18	0.00	4.46
8924	13861	1.002087	GTGGGTCCAGAGAACGTGATT	59.998	52.381	0.00	0.00	0.00	2.57
8943	13880	0.383949	TTCGGCTGCTTTCAAACCAC	59.616	50.000	0.00	0.00	0.00	4.16
8944	13881	0.465460	TCGGCTGCTTTCAAACCACT	60.465	50.000	0.00	0.00	0.00	4.00
8946	13883	1.197721	CGGCTGCTTTCAAACCACTAG	59.802	52.381	0.00	0.00	0.00	2.57
8947	13884	2.230660	GGCTGCTTTCAAACCACTAGT	58.769	47.619	0.00	0.00	0.00	2.57
8949	13886	3.818773	GGCTGCTTTCAAACCACTAGTAA	59.181	43.478	0.00	0.00	0.00	2.24
8950	13887	4.083271	GGCTGCTTTCAAACCACTAGTAAG	60.083	45.833	0.00	0.00	0.00	2.34
8954	13891	5.989777	TGCTTTCAAACCACTAGTAAGTCTC	59.010	40.000	0.00	0.00	31.97	3.36
8955	13892	5.989777	GCTTTCAAACCACTAGTAAGTCTCA	59.010	40.000	0.00	0.00	31.97	3.27
8956	13893	6.146347	GCTTTCAAACCACTAGTAAGTCTCAG	59.854	42.308	0.00	0.00	31.97	3.35
8957	13894	6.971726	TTCAAACCACTAGTAAGTCTCAGA	57.028	37.500	0.00	0.00	31.97	3.27
8963	13900	4.571580	CCACTAGTAAGTCTCAGACTACCG	59.428	50.000	8.05	4.31	42.59	4.02
8964	13901	5.177326	CACTAGTAAGTCTCAGACTACCGT	58.823	45.833	8.05	4.85	42.59	4.83
8967	13904	8.271535	CACTAGTAAGTCTCAGACTACCGTCTT	61.272	44.444	8.05	0.00	42.59	3.01
9186	15855	2.048127	GACCGCACCTCACCTGAC	60.048	66.667	0.00	0.00	0.00	3.51
9476	19241	0.323542	ACCTGCTGCGACCTACTACT	60.324	55.000	0.00	0.00	0.00	2.57
9536	20154	2.522185	GGTAAGTCCCTTGAAAACCCC	58.478	52.381	0.00	0.00	0.00	4.95
9604	23120	6.183360	TGGTAATTTGACGTAATCCATGTTCG	60.183	38.462	0.00	0.00	0.00	3.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	3.127030	GCCAAGATAAAAGTTGACGAGGG	59.873	47.826	0.00	0.00	0.00	4.30
89	90	0.250467	CTTGCCACACCAGCTACAGT	60.250	55.000	0.00	0.00	0.00	3.55
97	98	0.472044	TTGCTACTCTTGCCACACCA	59.528	50.000	0.00	0.00	0.00	4.17
100	101	2.566833	ACATTGCTACTCTTGCCACA	57.433	45.000	0.00	0.00	0.00	4.17
136	137	3.244911	CCTCCTAACCATCCAAACACAGT	60.245	47.826	0.00	0.00	0.00	3.55
137	138	3.009033	TCCTCCTAACCATCCAAACACAG	59.991	47.826	0.00	0.00	0.00	3.66
138	139	2.983192	TCCTCCTAACCATCCAAACACA	59.017	45.455	0.00	0.00	0.00	3.72
142	143	3.009033	CACTGTCCTCCTAACCATCCAAA	59.991	47.826	0.00	0.00	0.00	3.28
169	170	0.966875	TCAACCCTGATGGCATGTGC	60.967	55.000	3.81	0.00	37.83	4.57
171	172	1.076024	ACTTCAACCCTGATGGCATGT	59.924	47.619	3.81	0.00	37.83	3.21
173	174	1.341383	GGACTTCAACCCTGATGGCAT	60.341	52.381	0.00	0.00	36.63	4.40
175	176	0.329596	AGGACTTCAACCCTGATGGC	59.670	55.000	0.00	0.00	37.83	4.40
221	223	5.649395	CACAGAAGCCTGAAATAAATCCAGA	59.351	40.000	0.00	0.00	43.02	3.86
222	224	5.649395	TCACAGAAGCCTGAAATAAATCCAG	59.351	40.000	0.00	0.00	43.02	3.86
228	230	6.003326	TGAACATCACAGAAGCCTGAAATAA	58.997	36.000	0.00	0.00	43.02	1.40
237	239	1.808945	CCCACTGAACATCACAGAAGC	59.191	52.381	0.00	0.00	38.55	3.86
242	244	1.625315	CTCCTCCCACTGAACATCACA	59.375	52.381	0.00	0.00	0.00	3.58
244	246	1.902508	GTCTCCTCCCACTGAACATCA	59.097	52.381	0.00	0.00	0.00	3.07
245	247	1.134965	CGTCTCCTCCCACTGAACATC	60.135	57.143	0.00	0.00	0.00	3.06
246	248	0.898320	CGTCTCCTCCCACTGAACAT	59.102	55.000	0.00	0.00	0.00	2.71
247	249	0.469331	ACGTCTCCTCCCACTGAACA	60.469	55.000	0.00	0.00	0.00	3.18
248	250	0.680061	AACGTCTCCTCCCACTGAAC	59.320	55.000	0.00	0.00	0.00	3.18
254	261	0.966920	GACAAGAACGTCTCCTCCCA	59.033	55.000	0.00	0.00	32.92	4.37
276	283	3.449227	TCACTAGGCACCTCGCGG	61.449	66.667	6.13	0.00	43.84	6.46
278	285	0.458716	GAAGTCACTAGGCACCTCGC	60.459	60.000	0.00	0.00	41.28	5.03
284	291	5.401531	AGATTTTACGAAGTCACTAGGCA	57.598	39.130	0.00	0.00	43.93	4.75
286	293	9.804758	ATCTTAAGATTTTACGAAGTCACTAGG	57.195	33.333	12.37	0.00	43.93	3.02
289	296	7.819900	AGCATCTTAAGATTTTACGAAGTCACT	59.180	33.333	15.49	0.00	35.39	3.41
297	304	6.299604	CGGCATAGCATCTTAAGATTTTACG	58.700	40.000	15.49	9.91	31.21	3.18
319	326	0.382515	CCTTCGAGAGACTAAGCCGG	59.617	60.000	0.00	0.00	41.84	6.13
321	328	1.470112	GCACCTTCGAGAGACTAAGCC	60.470	57.143	0.00	0.00	41.84	4.35
325	332	2.491675	TGAGCACCTTCGAGAGACTA	57.508	50.000	0.00	0.00	41.84	2.59
335	342	2.598565	TCCTATCGCTATGAGCACCTT	58.401	47.619	0.00	0.00	42.58	3.50
380	387	7.275341	GCTCACATACAAGAGTATATGCTCATC	59.725	40.741	21.06	0.00	38.88	2.92
387	394	9.847706	CGAATTAGCTCACATACAAGAGTATAT	57.152	33.333	0.00	0.00	38.88	0.86
391	398	6.208988	TCGAATTAGCTCACATACAAGAGT	57.791	37.500	0.00	0.00	34.39	3.24
395	402	7.979537	AGTACAATCGAATTAGCTCACATACAA	59.020	33.333	0.00	0.00	0.00	2.41
403	410	8.552469	TTAACGTAGTACAATCGAATTAGCTC	57.448	34.615	10.34	0.00	45.00	4.09
439	446	5.751509	GGTGAAATAAGAACCTTGCGTTTTT	59.248	36.000	0.00	0.00	33.74	1.94
440	447	5.068591	AGGTGAAATAAGAACCTTGCGTTTT	59.931	36.000	0.00	0.00	41.65	2.43
441	448	4.583073	AGGTGAAATAAGAACCTTGCGTTT	59.417	37.500	0.00	0.00	41.65	3.60
442	449	4.142038	AGGTGAAATAAGAACCTTGCGTT	58.858	39.130	0.00	0.00	41.65	4.84
443	450	3.751518	AGGTGAAATAAGAACCTTGCGT	58.248	40.909	0.00	0.00	41.65	5.24
448	455	7.014326	GTGGAAAGAAAGGTGAAATAAGAACCT	59.986	37.037	0.00	0.00	46.40	3.50
449	456	7.145985	GTGGAAAGAAAGGTGAAATAAGAACC	58.854	38.462	0.00	0.00	0.00	3.62
450	457	7.145985	GGTGGAAAGAAAGGTGAAATAAGAAC	58.854	38.462	0.00	0.00	0.00	3.01
451	458	6.836527	TGGTGGAAAGAAAGGTGAAATAAGAA	59.163	34.615	0.00	0.00	0.00	2.52
452	459	6.264518	GTGGTGGAAAGAAAGGTGAAATAAGA	59.735	38.462	0.00	0.00	0.00	2.10
453	460	6.447162	GTGGTGGAAAGAAAGGTGAAATAAG	58.553	40.000	0.00	0.00	0.00	1.73
454	461	5.303333	GGTGGTGGAAAGAAAGGTGAAATAA	59.697	40.000	0.00	0.00	0.00	1.40
455	462	4.830600	GGTGGTGGAAAGAAAGGTGAAATA	59.169	41.667	0.00	0.00	0.00	1.40
456	463	3.641436	GGTGGTGGAAAGAAAGGTGAAAT	59.359	43.478	0.00	0.00	0.00	2.17
457	464	3.028130	GGTGGTGGAAAGAAAGGTGAAA	58.972	45.455	0.00	0.00	0.00	2.69
458	465	2.661718	GGTGGTGGAAAGAAAGGTGAA	58.338	47.619	0.00	0.00	0.00	3.18
459	466	1.133606	GGGTGGTGGAAAGAAAGGTGA	60.134	52.381	0.00	0.00	0.00	4.02
460	467	1.328279	GGGTGGTGGAAAGAAAGGTG	58.672	55.000	0.00	0.00	0.00	4.00
461	468	0.187606	GGGGTGGTGGAAAGAAAGGT	59.812	55.000	0.00	0.00	0.00	3.50
462	469	0.482887	AGGGGTGGTGGAAAGAAAGG	59.517	55.000	0.00	0.00	0.00	3.11
463	470	2.239400	GAAGGGGTGGTGGAAAGAAAG	58.761	52.381	0.00	0.00	0.00	2.62
464	471	1.477923	CGAAGGGGTGGTGGAAAGAAA	60.478	52.381	0.00	0.00	0.00	2.52
465	472	0.109723	CGAAGGGGTGGTGGAAAGAA	59.890	55.000	0.00	0.00	0.00	2.52
466	473	1.057851	ACGAAGGGGTGGTGGAAAGA	61.058	55.000	0.00	0.00	0.00	2.52
467	474	0.605589	GACGAAGGGGTGGTGGAAAG	60.606	60.000	0.00	0.00	0.00	2.62
468	475	1.452801	GACGAAGGGGTGGTGGAAA	59.547	57.895	0.00	0.00	0.00	3.13
469	476	2.522367	GGACGAAGGGGTGGTGGAA	61.522	63.158	0.00	0.00	0.00	3.53
470	477	2.926242	GGACGAAGGGGTGGTGGA	60.926	66.667	0.00	0.00	0.00	4.02
471	478	2.824880	TTGGACGAAGGGGTGGTGG	61.825	63.158	0.00	0.00	0.00	4.61
472	479	1.599797	GTTGGACGAAGGGGTGGTG	60.600	63.158	0.00	0.00	0.00	4.17
473	480	2.826003	GGTTGGACGAAGGGGTGGT	61.826	63.158	0.00	0.00	0.00	4.16
474	481	2.033602	GGTTGGACGAAGGGGTGG	59.966	66.667	0.00	0.00	0.00	4.61
475	482	0.605589	GAAGGTTGGACGAAGGGGTG	60.606	60.000	0.00	0.00	0.00	4.61
476	483	1.759236	GAAGGTTGGACGAAGGGGT	59.241	57.895	0.00	0.00	0.00	4.95
477	484	1.002502	GGAAGGTTGGACGAAGGGG	60.003	63.158	0.00	0.00	0.00	4.79
478	485	0.400594	AAGGAAGGTTGGACGAAGGG	59.599	55.000	0.00	0.00	0.00	3.95
479	486	1.202770	ACAAGGAAGGTTGGACGAAGG	60.203	52.381	0.00	0.00	0.00	3.46
480	487	2.256117	ACAAGGAAGGTTGGACGAAG	57.744	50.000	0.00	0.00	0.00	3.79
481	488	3.325425	TCATACAAGGAAGGTTGGACGAA	59.675	43.478	0.00	0.00	0.00	3.85
482	489	2.901192	TCATACAAGGAAGGTTGGACGA	59.099	45.455	0.00	0.00	0.00	4.20
483	490	3.328382	TCATACAAGGAAGGTTGGACG	57.672	47.619	0.00	0.00	0.00	4.79
484	491	7.012421	GTGATTATCATACAAGGAAGGTTGGAC	59.988	40.741	0.00	0.00	0.00	4.02
485	492	7.054124	GTGATTATCATACAAGGAAGGTTGGA	58.946	38.462	0.00	0.00	0.00	3.53
486	493	7.056635	AGTGATTATCATACAAGGAAGGTTGG	58.943	38.462	0.00	0.00	0.00	3.77
487	494	8.511604	AAGTGATTATCATACAAGGAAGGTTG	57.488	34.615	0.00	0.00	0.00	3.77
507	514	9.498176	GGTTCAGAAGGTAAGTAAATTAAGTGA	57.502	33.333	0.00	0.00	0.00	3.41
508	515	9.280174	TGGTTCAGAAGGTAAGTAAATTAAGTG	57.720	33.333	0.00	0.00	0.00	3.16
509	516	9.856162	TTGGTTCAGAAGGTAAGTAAATTAAGT	57.144	29.630	0.00	0.00	0.00	2.24
516	523	9.856162	AGTAAAATTGGTTCAGAAGGTAAGTAA	57.144	29.630	0.00	0.00	0.00	2.24
517	524	9.856162	AAGTAAAATTGGTTCAGAAGGTAAGTA	57.144	29.630	0.00	0.00	0.00	2.24
518	525	8.762481	AAGTAAAATTGGTTCAGAAGGTAAGT	57.238	30.769	0.00	0.00	0.00	2.24
574	581	9.370930	TCAAATTCTGCCCATGAATTATCTTAT	57.629	29.630	0.00	0.00	41.54	1.73
575	582	8.765488	TCAAATTCTGCCCATGAATTATCTTA	57.235	30.769	0.00	0.00	41.54	2.10
576	583	7.664552	TCAAATTCTGCCCATGAATTATCTT	57.335	32.000	0.00	0.00	41.54	2.40
577	584	7.507956	TCATCAAATTCTGCCCATGAATTATCT	59.492	33.333	0.00	0.00	41.54	1.98
578	585	7.663827	TCATCAAATTCTGCCCATGAATTATC	58.336	34.615	0.00	0.00	41.54	1.75
579	586	7.606135	TCATCAAATTCTGCCCATGAATTAT	57.394	32.000	0.00	0.00	41.54	1.28
580	587	7.093421	TGTTCATCAAATTCTGCCCATGAATTA	60.093	33.333	0.00	0.00	41.54	1.40
581	588	5.943349	TCATCAAATTCTGCCCATGAATT	57.057	34.783	0.00	0.00	43.44	2.17
582	589	5.188163	TGTTCATCAAATTCTGCCCATGAAT	59.812	36.000	0.00	0.00	31.86	2.57
583	590	4.527427	TGTTCATCAAATTCTGCCCATGAA	59.473	37.500	0.00	0.00	0.00	2.57
584	591	4.087907	TGTTCATCAAATTCTGCCCATGA	58.912	39.130	0.00	0.00	0.00	3.07
585	592	4.459390	TGTTCATCAAATTCTGCCCATG	57.541	40.909	0.00	0.00	0.00	3.66
586	593	5.188163	TGAATGTTCATCAAATTCTGCCCAT	59.812	36.000	0.00	0.00	32.63	4.00
587	594	4.527427	TGAATGTTCATCAAATTCTGCCCA	59.473	37.500	0.00	0.00	32.63	5.36
588	595	5.075858	TGAATGTTCATCAAATTCTGCCC	57.924	39.130	0.00	0.00	32.63	5.36
589	596	7.605410	AAATGAATGTTCATCAAATTCTGCC	57.395	32.000	8.56	0.00	46.60	4.85
590	597	9.142515	TGTAAATGAATGTTCATCAAATTCTGC	57.857	29.630	8.56	0.00	46.60	4.26
596	603	9.127006	CGATTGTGTAAATGAATGTTCATCAAA	57.873	29.630	8.56	0.00	46.60	2.69
597	604	7.273164	GCGATTGTGTAAATGAATGTTCATCAA	59.727	33.333	8.56	8.45	46.60	2.57
598	605	6.746822	GCGATTGTGTAAATGAATGTTCATCA	59.253	34.615	8.56	1.00	46.60	3.07
599	606	6.746822	TGCGATTGTGTAAATGAATGTTCATC	59.253	34.615	8.56	0.00	46.60	2.92
601	608	6.006759	TGCGATTGTGTAAATGAATGTTCA	57.993	33.333	0.00	0.00	42.14	3.18
602	609	7.510428	AATGCGATTGTGTAAATGAATGTTC	57.490	32.000	0.00	0.00	0.00	3.18
603	610	9.585099	AATAATGCGATTGTGTAAATGAATGTT	57.415	25.926	0.00	0.00	0.00	2.71
610	617	9.847706	TGTTTGTAATAATGCGATTGTGTAAAT	57.152	25.926	0.00	0.00	0.00	1.40
611	618	9.335891	CTGTTTGTAATAATGCGATTGTGTAAA	57.664	29.630	0.00	0.00	0.00	2.01
612	619	7.965655	CCTGTTTGTAATAATGCGATTGTGTAA	59.034	33.333	0.00	0.00	0.00	2.41
613	620	7.119992	ACCTGTTTGTAATAATGCGATTGTGTA	59.880	33.333	0.00	0.00	0.00	2.90
614	621	6.072175	ACCTGTTTGTAATAATGCGATTGTGT	60.072	34.615	0.00	0.00	0.00	3.72
615	622	6.321717	ACCTGTTTGTAATAATGCGATTGTG	58.678	36.000	0.00	0.00	0.00	3.33
616	623	6.509418	ACCTGTTTGTAATAATGCGATTGT	57.491	33.333	0.00	0.00	0.00	2.71
617	624	9.169468	GATTACCTGTTTGTAATAATGCGATTG	57.831	33.333	0.00	0.00	40.57	2.67
618	625	8.898761	TGATTACCTGTTTGTAATAATGCGATT	58.101	29.630	0.00	0.00	40.57	3.34
619	626	8.342634	GTGATTACCTGTTTGTAATAATGCGAT	58.657	33.333	0.00	0.00	40.57	4.58
620	627	7.334671	TGTGATTACCTGTTTGTAATAATGCGA	59.665	33.333	0.00	0.00	40.57	5.10
621	628	7.468441	TGTGATTACCTGTTTGTAATAATGCG	58.532	34.615	0.00	0.00	40.57	4.73
622	629	9.289303	CTTGTGATTACCTGTTTGTAATAATGC	57.711	33.333	0.00	0.00	40.57	3.56
623	630	9.289303	GCTTGTGATTACCTGTTTGTAATAATG	57.711	33.333	0.00	0.00	40.57	1.90
624	631	9.243105	AGCTTGTGATTACCTGTTTGTAATAAT	57.757	29.630	0.00	0.00	40.57	1.28
625	632	8.630054	AGCTTGTGATTACCTGTTTGTAATAA	57.370	30.769	0.00	0.00	40.57	1.40
626	633	9.727859	TTAGCTTGTGATTACCTGTTTGTAATA	57.272	29.630	0.00	0.00	40.57	0.98
627	634	8.512138	GTTAGCTTGTGATTACCTGTTTGTAAT	58.488	33.333	0.00	0.00	42.58	1.89
628	635	7.307514	CGTTAGCTTGTGATTACCTGTTTGTAA	60.308	37.037	0.00	0.00	35.33	2.41
629	636	6.146510	CGTTAGCTTGTGATTACCTGTTTGTA	59.853	38.462	0.00	0.00	0.00	2.41
630	637	5.049680	CGTTAGCTTGTGATTACCTGTTTGT	60.050	40.000	0.00	0.00	0.00	2.83
631	638	5.049680	ACGTTAGCTTGTGATTACCTGTTTG	60.050	40.000	0.00	0.00	0.00	2.93
632	639	5.061179	ACGTTAGCTTGTGATTACCTGTTT	58.939	37.500	0.00	0.00	0.00	2.83
633	640	4.638304	ACGTTAGCTTGTGATTACCTGTT	58.362	39.130	0.00	0.00	0.00	3.16
634	641	4.267349	ACGTTAGCTTGTGATTACCTGT	57.733	40.909	0.00	0.00	0.00	4.00
635	642	5.408356	AGTACGTTAGCTTGTGATTACCTG	58.592	41.667	0.00	0.00	0.00	4.00
636	643	5.656213	AGTACGTTAGCTTGTGATTACCT	57.344	39.130	0.00	0.00	0.00	3.08
637	644	6.789262	TCTAGTACGTTAGCTTGTGATTACC	58.211	40.000	0.00	0.00	0.00	2.85
638	645	8.853469	ATTCTAGTACGTTAGCTTGTGATTAC	57.147	34.615	0.00	0.00	0.00	1.89
675	682	2.353376	ATGCACGTGCGTTGCAAC	60.353	55.556	33.22	19.89	45.83	4.17
681	688	2.888594	ACTAGAATAATGCACGTGCGT	58.111	42.857	33.22	31.21	45.83	5.24
682	689	5.576337	AATACTAGAATAATGCACGTGCG	57.424	39.130	33.22	18.75	45.83	5.34
683	690	9.710979	TTTTTAATACTAGAATAATGCACGTGC	57.289	29.630	33.11	33.11	42.50	5.34
744	751	0.903236	GGGTTATATCGGGGAGCTCC	59.097	60.000	25.59	25.59	0.00	4.70
745	752	1.550976	CAGGGTTATATCGGGGAGCTC	59.449	57.143	4.71	4.71	0.00	4.09
746	753	1.149288	TCAGGGTTATATCGGGGAGCT	59.851	52.381	0.00	0.00	0.00	4.09
747	754	1.640917	TCAGGGTTATATCGGGGAGC	58.359	55.000	0.00	0.00	0.00	4.70
748	755	4.910458	AAATCAGGGTTATATCGGGGAG	57.090	45.455	0.00	0.00	0.00	4.30
749	756	4.262721	CGAAAATCAGGGTTATATCGGGGA	60.263	45.833	0.00	0.00	0.00	4.81
750	757	4.000988	CGAAAATCAGGGTTATATCGGGG	58.999	47.826	0.00	0.00	0.00	5.73
751	758	4.890088	TCGAAAATCAGGGTTATATCGGG	58.110	43.478	0.00	0.00	0.00	5.14
752	759	4.389077	GCTCGAAAATCAGGGTTATATCGG	59.611	45.833	0.00	0.00	0.00	4.18
753	760	5.230942	AGCTCGAAAATCAGGGTTATATCG	58.769	41.667	0.00	0.00	0.00	2.92
967	986	1.549037	CGGGAGGTTTTGGGAATTGGA	60.549	52.381	0.00	0.00	0.00	3.53
1132	1151	2.124695	GATCACCACCCGCTTCCC	60.125	66.667	0.00	0.00	0.00	3.97
1170	1189	2.028043	ACGTCGTTCCCGAACACC	59.972	61.111	8.23	0.00	46.26	4.16
1449	1468	4.175337	ATGCCGGACCCCACGATG	62.175	66.667	5.05	0.00	0.00	3.84
1671	1690	2.966732	GCCCAACCGGATCTGGTCA	61.967	63.158	26.61	0.00	42.89	4.02
1858	1877	6.424883	AGGGGAGTATCGAATATACCAGTAG	58.575	44.000	0.00	0.00	34.37	2.57
1888	1907	4.549458	AGCAAATCCGTCATGAAAAAGTG	58.451	39.130	0.00	0.00	0.00	3.16
1889	1908	4.853924	AGCAAATCCGTCATGAAAAAGT	57.146	36.364	0.00	0.00	0.00	2.66
1890	1909	7.816945	AAATAGCAAATCCGTCATGAAAAAG	57.183	32.000	0.00	0.00	0.00	2.27
1891	1910	9.134734	GTAAAATAGCAAATCCGTCATGAAAAA	57.865	29.630	0.00	0.00	0.00	1.94
1892	1911	8.300286	TGTAAAATAGCAAATCCGTCATGAAAA	58.700	29.630	0.00	0.00	0.00	2.29
1893	1912	7.821652	TGTAAAATAGCAAATCCGTCATGAAA	58.178	30.769	0.00	0.00	0.00	2.69
1894	1913	7.384439	TGTAAAATAGCAAATCCGTCATGAA	57.616	32.000	0.00	0.00	0.00	2.57
1895	1914	6.993786	TGTAAAATAGCAAATCCGTCATGA	57.006	33.333	0.00	0.00	0.00	3.07
1896	1915	7.642669	AGATGTAAAATAGCAAATCCGTCATG	58.357	34.615	0.00	0.00	0.00	3.07
1897	1916	7.807977	AGATGTAAAATAGCAAATCCGTCAT	57.192	32.000	0.00	0.00	0.00	3.06
1898	1917	8.725405	TTAGATGTAAAATAGCAAATCCGTCA	57.275	30.769	0.00	0.00	0.00	4.35
1955	1974	9.958234	TTTTAAAGACAAACAATCGAATGATGA	57.042	25.926	7.64	0.00	34.24	2.92
2013	2033	4.371855	AGATCAGCGAGACAAATACGAA	57.628	40.909	0.00	0.00	0.00	3.85
2072	2092	5.392165	CCAAATGTTGGCTTGCCAAATATTG	60.392	40.000	26.12	25.13	45.17	1.90
2073	2093	4.701171	CCAAATGTTGGCTTGCCAAATATT	59.299	37.500	26.12	23.52	45.17	1.28
2074	2094	4.263435	CCAAATGTTGGCTTGCCAAATAT	58.737	39.130	26.12	19.92	45.17	1.28
2075	2095	3.672808	CCAAATGTTGGCTTGCCAAATA	58.327	40.909	26.12	18.73	45.17	1.40
2076	2096	2.506444	CCAAATGTTGGCTTGCCAAAT	58.494	42.857	26.12	18.32	45.17	2.32
2077	2097	1.964552	CCAAATGTTGGCTTGCCAAA	58.035	45.000	26.12	17.09	45.17	3.28
2078	2098	3.702147	CCAAATGTTGGCTTGCCAA	57.298	47.368	21.59	21.59	45.17	4.52
2087	2107	6.423862	CAACTTCTGATTTTGCCAAATGTTG	58.576	36.000	0.00	5.05	32.35	3.33
2088	2108	5.007921	GCAACTTCTGATTTTGCCAAATGTT	59.992	36.000	0.00	0.00	39.82	2.71
2089	2109	4.512571	GCAACTTCTGATTTTGCCAAATGT	59.487	37.500	0.00	0.00	39.82	2.71
2090	2110	5.025986	GCAACTTCTGATTTTGCCAAATG	57.974	39.130	0.00	0.00	39.82	2.32
2096	2116	3.456280	TGTTGGCAACTTCTGATTTTGC	58.544	40.909	28.71	12.84	44.05	3.68
2097	2117	6.423862	CAAATGTTGGCAACTTCTGATTTTG	58.576	36.000	28.71	18.07	37.61	2.44
2098	2118	5.528320	CCAAATGTTGGCAACTTCTGATTTT	59.472	36.000	28.71	11.40	45.17	1.82
2099	2119	5.058490	CCAAATGTTGGCAACTTCTGATTT	58.942	37.500	28.71	21.46	45.17	2.17
2100	2120	4.634199	CCAAATGTTGGCAACTTCTGATT	58.366	39.130	28.71	17.35	45.17	2.57
2101	2121	4.261578	CCAAATGTTGGCAACTTCTGAT	57.738	40.909	28.71	12.52	45.17	2.90
2102	2122	3.731652	CCAAATGTTGGCAACTTCTGA	57.268	42.857	28.71	10.68	45.17	3.27
2113	2133	5.811613	TCTCAAAGAAAGTTGCCAAATGTTG	59.188	36.000	0.00	0.00	0.00	3.33
2114	2134	5.976458	TCTCAAAGAAAGTTGCCAAATGTT	58.024	33.333	0.00	0.00	0.00	2.71
2115	2135	5.596836	TCTCAAAGAAAGTTGCCAAATGT	57.403	34.783	0.00	0.00	0.00	2.71
2116	2136	6.702723	TCAATCTCAAAGAAAGTTGCCAAATG	59.297	34.615	0.00	0.00	0.00	2.32
2117	2137	6.703165	GTCAATCTCAAAGAAAGTTGCCAAAT	59.297	34.615	0.00	0.00	0.00	2.32
2118	2138	6.042143	GTCAATCTCAAAGAAAGTTGCCAAA	58.958	36.000	0.00	0.00	0.00	3.28
2119	2139	5.126869	TGTCAATCTCAAAGAAAGTTGCCAA	59.873	36.000	0.00	0.00	0.00	4.52
2120	2140	4.644234	TGTCAATCTCAAAGAAAGTTGCCA	59.356	37.500	0.00	0.00	0.00	4.92
2121	2141	5.186996	TGTCAATCTCAAAGAAAGTTGCC	57.813	39.130	0.00	0.00	0.00	4.52
2122	2142	8.801715	TTATTGTCAATCTCAAAGAAAGTTGC	57.198	30.769	0.07	0.00	0.00	4.17
2129	2149	9.206870	GCCAATTTTTATTGTCAATCTCAAAGA	57.793	29.630	0.07	0.00	0.00	2.52
2130	2150	8.991026	TGCCAATTTTTATTGTCAATCTCAAAG	58.009	29.630	0.07	0.00	0.00	2.77
2131	2151	8.899427	TGCCAATTTTTATTGTCAATCTCAAA	57.101	26.923	0.07	0.86	0.00	2.69
2132	2152	8.899427	TTGCCAATTTTTATTGTCAATCTCAA	57.101	26.923	0.07	0.00	26.37	3.02
2133	2153	7.118101	GCTTGCCAATTTTTATTGTCAATCTCA	59.882	33.333	0.07	0.00	30.49	3.27
2134	2154	7.118101	TGCTTGCCAATTTTTATTGTCAATCTC	59.882	33.333	0.07	0.00	30.49	2.75
2135	2155	6.935771	TGCTTGCCAATTTTTATTGTCAATCT	59.064	30.769	0.07	0.00	30.49	2.40
2136	2156	7.131498	TGCTTGCCAATTTTTATTGTCAATC	57.869	32.000	0.07	0.00	30.49	2.67
2137	2157	7.361894	GTTGCTTGCCAATTTTTATTGTCAAT	58.638	30.769	3.06	3.06	35.55	2.57
2138	2158	6.238593	GGTTGCTTGCCAATTTTTATTGTCAA	60.239	34.615	0.00	0.00	35.55	3.18
2139	2159	5.238214	GGTTGCTTGCCAATTTTTATTGTCA	59.762	36.000	0.00	0.00	35.55	3.58
2140	2160	5.238214	TGGTTGCTTGCCAATTTTTATTGTC	59.762	36.000	0.00	0.00	35.55	3.18
2141	2161	5.128919	TGGTTGCTTGCCAATTTTTATTGT	58.871	33.333	0.00	0.00	35.55	2.71
2142	2162	5.686159	TGGTTGCTTGCCAATTTTTATTG	57.314	34.783	0.00	0.00	35.55	1.90
2152	2172	2.715046	CTAGAGATTGGTTGCTTGCCA	58.285	47.619	0.00	0.00	0.00	4.92
2153	2173	1.403323	GCTAGAGATTGGTTGCTTGCC	59.597	52.381	0.00	0.00	0.00	4.52
2154	2174	1.403323	GGCTAGAGATTGGTTGCTTGC	59.597	52.381	0.00	0.00	0.00	4.01
2155	2175	2.715046	TGGCTAGAGATTGGTTGCTTG	58.285	47.619	0.00	0.00	0.00	4.01
2156	2176	3.439857	TTGGCTAGAGATTGGTTGCTT	57.560	42.857	0.00	0.00	0.00	3.91
2157	2177	3.659183	ATTGGCTAGAGATTGGTTGCT	57.341	42.857	0.00	0.00	0.00	3.91
2158	2178	6.211515	CAAATATTGGCTAGAGATTGGTTGC	58.788	40.000	0.00	0.00	0.00	4.17
2159	2179	6.742109	CCAAATATTGGCTAGAGATTGGTTG	58.258	40.000	0.00	0.00	45.17	3.77
2160	2180	6.966534	CCAAATATTGGCTAGAGATTGGTT	57.033	37.500	0.00	0.00	45.17	3.67
2184	2204	3.854703	CGATTAACGGACGAGGCAACTG	61.855	54.545	0.00	0.00	43.16	3.16
2185	2205	1.734707	CGATTAACGGACGAGGCAACT	60.735	52.381	0.00	0.00	45.05	3.16
2186	2206	0.643820	CGATTAACGGACGAGGCAAC	59.356	55.000	0.00	0.00	38.46	4.17
2187	2207	3.038946	CGATTAACGGACGAGGCAA	57.961	52.632	0.00	0.00	38.46	4.52
2188	2208	4.798288	CGATTAACGGACGAGGCA	57.202	55.556	0.00	0.00	38.46	4.75
2349	4204	3.071479	GTTCTGACCGCTGTAATTTGGA	58.929	45.455	0.00	0.00	0.00	3.53
2372	4227	2.039879	AGTCCAGTGTTCCCCATTGTAC	59.960	50.000	0.00	0.00	0.00	2.90
2400	4256	2.171659	TGCTTGTGGAGGTTGTAGTCAA	59.828	45.455	0.00	0.00	0.00	3.18
2491	4348	2.047179	TGCTCTGCTGCTCTGCTG	60.047	61.111	0.00	0.61	0.00	4.41
2572	4429	4.580995	TCTTCGGTGATAGAGATGGAAGAC	59.419	45.833	0.00	0.00	35.00	3.01
2686	4543	1.404986	GCACTATGTCCACCTTGCGTA	60.405	52.381	0.00	0.00	0.00	4.42
2690	4547	1.369091	GCCGCACTATGTCCACCTTG	61.369	60.000	0.00	0.00	0.00	3.61
2768	4625	3.243569	CGATTCCACGAAGCTTATCTCCT	60.244	47.826	0.00	0.00	35.09	3.69
3082	4939	0.620556	GTGATTTCCTCTCTGGCCCA	59.379	55.000	0.00	0.00	35.26	5.36
3157	5014	2.408704	CGCGAAGTTTCTTCGTCAGATT	59.591	45.455	25.25	0.00	43.24	2.40
3395	5253	1.764054	CTCCCTTCATCCCCTCGCT	60.764	63.158	0.00	0.00	0.00	4.93
3835	5693	0.826256	AAAACGGAAGAAGGGGCCAC	60.826	55.000	4.39	0.00	0.00	5.01
4194	6087	7.561021	AACACACACACACACTTATTCATAA	57.439	32.000	0.00	0.00	0.00	1.90
4449	7078	3.130340	CACACAAAAGCACCCTTAGTTGT	59.870	43.478	0.00	0.00	34.14	3.32
4590	7436	1.248785	ATGTAGCTGTGGACCGTCGT	61.249	55.000	0.00	0.00	0.00	4.34
4606	7452	0.173481	CGAGTCGATGGTGGACATGT	59.827	55.000	6.73	0.00	40.72	3.21
4656	7502	2.867333	ATCCTCTACACACACGCGCG	62.867	60.000	30.96	30.96	0.00	6.86
4658	7504	0.525668	GGATCCTCTACACACACGCG	60.526	60.000	3.53	3.53	0.00	6.01
4659	7505	0.179108	GGGATCCTCTACACACACGC	60.179	60.000	12.58	0.00	0.00	5.34
4660	7506	0.460311	GGGGATCCTCTACACACACG	59.540	60.000	12.58	0.00	0.00	4.49
4691	7537	4.202161	CCATTAGTTGCGAGTAGATGGTCT	60.202	45.833	15.31	0.00	0.00	3.85
4827	7675	0.181587	TCGACAAACCCCACACACAT	59.818	50.000	0.00	0.00	0.00	3.21
4838	7686	0.680061	ACTGAGGACCCTCGACAAAC	59.320	55.000	11.11	0.00	45.48	2.93
4853	7701	1.795768	GATGGTCGACTTGCAACTGA	58.204	50.000	16.46	0.00	0.00	3.41
4982	8064	1.313812	CCCCTAGTTGCGAGTCGACT	61.314	60.000	20.18	20.18	42.09	4.18
4983	8065	1.139095	CCCCTAGTTGCGAGTCGAC	59.861	63.158	18.61	7.70	0.00	4.20
5285	8443	2.359850	TTGCAACTAGGCGCCCTG	60.360	61.111	26.15	19.06	34.61	4.45
5290	8448	1.352156	GGTCGACTTGCAACTAGGCG	61.352	60.000	16.46	5.76	45.43	5.52
5464	9508	1.537990	GGCCATGACAAAACACACACC	60.538	52.381	0.00	0.00	0.00	4.16
5730	10141	5.529430	CACACATACACCCTTAGTTGTTGAA	59.471	40.000	0.00	0.00	0.00	2.69
5892	10330	0.452184	ACACGTCCTCAGTAGCGATG	59.548	55.000	0.00	0.00	0.00	3.84
5991	10442	1.656594	CGATACCATTTGCGTGTCGAA	59.343	47.619	10.49	0.00	44.60	3.71
6030	10541	2.281484	GGGCGGACTTGCAACTCA	60.281	61.111	0.00	0.00	36.28	3.41
6207	10722	6.919662	GCTCATCACTTGTTTCAAAAAGATGA	59.080	34.615	0.00	0.00	38.50	2.92
6841	11442	5.874093	AGTCACATCAAGAGGTTTCTTCAT	58.126	37.500	0.00	0.00	41.71	2.57
7161	12041	6.346919	GCGTGACCAATGTACATCATTCTATC	60.347	42.308	9.23	1.68	43.93	2.08
7215	12095	8.687242	TCTAAGAAGAAGAATCTATCGCTGAAA	58.313	33.333	0.00	0.00	33.77	2.69
7218	12098	7.918033	TGTTCTAAGAAGAAGAATCTATCGCTG	59.082	37.037	0.00	0.00	42.40	5.18
7260	12140	3.445805	TCCGGGCTTCCAAATAACAATTC	59.554	43.478	0.00	0.00	0.00	2.17
7261	12141	3.436243	TCCGGGCTTCCAAATAACAATT	58.564	40.909	0.00	0.00	0.00	2.32
7262	12142	3.094484	TCCGGGCTTCCAAATAACAAT	57.906	42.857	0.00	0.00	0.00	2.71
7359	12239	5.356882	TTTATTTCAAGAGGTTCGCACAG	57.643	39.130	0.00	0.00	0.00	3.66
7527	12407	0.320247	CTGCGTCTTCAAGGCTCTGT	60.320	55.000	0.00	0.00	39.53	3.41
7590	12470	8.038351	TCGAGATTAGTACACAATTCCAAATGA	58.962	33.333	0.00	0.00	0.00	2.57
7634	12514	1.909700	TTCATGACCCAGCTTGGAAC	58.090	50.000	11.55	4.95	40.96	3.62
7656	12536	7.162082	ACCTGGAGTGAAGACATTTAACTTAG	58.838	38.462	0.00	0.00	0.00	2.18
7669	12549	7.921786	TTTATGTAATTGACCTGGAGTGAAG	57.078	36.000	0.00	0.00	0.00	3.02
7676	12556	6.698008	TGAGCATTTATGTAATTGACCTGG	57.302	37.500	0.00	0.00	0.00	4.45
7717	12597	0.809241	CACCTCTGCAAGATCTCCGC	60.809	60.000	9.59	9.59	45.62	5.54
7813	12693	3.070018	ACAAATGTCTCTGAAGCTTCCG	58.930	45.455	23.42	17.36	0.00	4.30
8013	12893	7.491372	GCCCTACTTTTTGGAACATAAATAAGC	59.509	37.037	0.00	0.00	38.47	3.09
8031	12911	8.823220	AATTCTACATACAAAATGCCCTACTT	57.177	30.769	0.00	0.00	0.00	2.24
8036	12916	8.466798	ACTTGTAATTCTACATACAAAATGCCC	58.533	33.333	0.00	0.00	40.42	5.36
8038	12918	8.798153	GCACTTGTAATTCTACATACAAAATGC	58.202	33.333	13.90	13.90	41.65	3.56
8122	13012	3.058293	GTGTCAAATTGATCAACTGCCGA	60.058	43.478	11.07	0.68	0.00	5.54
8126	13016	4.221342	CACCGTGTCAAATTGATCAACTG	58.779	43.478	11.07	11.34	0.00	3.16
8140	13030	2.964438	TTCACACTCCGCACCGTGTC	62.964	60.000	0.00	0.00	42.05	3.67
8151	13041	1.663643	TCGTGTTGTTGCTTCACACTC	59.336	47.619	0.00	0.00	33.04	3.51
8157	13047	3.604392	GTGTACTTCGTGTTGTTGCTTC	58.396	45.455	0.00	0.00	0.00	3.86
8198	13088	4.981389	TCGGTTTGTATTTTGCATTTGC	57.019	36.364	0.00	0.00	42.50	3.68
8244	13134	3.710209	AAGGGAAGACAGGAATGAGTG	57.290	47.619	0.00	0.00	0.00	3.51
8255	13145	6.004408	TGCATTTTTACGTAAAGGGAAGAC	57.996	37.500	19.31	9.10	0.00	3.01
8259	13149	4.400120	ACCTGCATTTTTACGTAAAGGGA	58.600	39.130	19.31	13.52	0.00	4.20
8268	13158	7.771183	TGAATTGGAGATACCTGCATTTTTAC	58.229	34.615	0.00	0.00	40.50	2.01
8270	13160	6.855763	TGAATTGGAGATACCTGCATTTTT	57.144	33.333	0.00	0.00	40.50	1.94
8332	13222	2.487762	CACACGTCATGGCTTAAATGGT	59.512	45.455	0.00	0.00	0.00	3.55
8342	13232	9.692749	ATACTATAAATAGAACACACGTCATGG	57.307	33.333	4.02	0.00	34.50	3.66
8366	13256	6.986231	CACCTGCTCTAATCACATACACAATA	59.014	38.462	0.00	0.00	0.00	1.90
8367	13257	5.819379	CACCTGCTCTAATCACATACACAAT	59.181	40.000	0.00	0.00	0.00	2.71
8368	13258	5.178061	CACCTGCTCTAATCACATACACAA	58.822	41.667	0.00	0.00	0.00	3.33
8369	13259	4.383010	CCACCTGCTCTAATCACATACACA	60.383	45.833	0.00	0.00	0.00	3.72
8377	13267	8.844865	ATATATATGACCACCTGCTCTAATCA	57.155	34.615	0.00	0.00	0.00	2.57
8397	13287	8.677300	CCTTCCATGTGCGCTAAAAATATATAT	58.323	33.333	9.73	0.00	0.00	0.86
8398	13288	7.663905	ACCTTCCATGTGCGCTAAAAATATATA	59.336	33.333	9.73	0.00	0.00	0.86
8403	13293	2.825532	ACCTTCCATGTGCGCTAAAAAT	59.174	40.909	9.73	0.00	0.00	1.82
8408	13298	1.078497	CCACCTTCCATGTGCGCTA	60.078	57.895	9.73	0.00	32.30	4.26
8409	13299	2.360350	CCACCTTCCATGTGCGCT	60.360	61.111	9.73	0.00	32.30	5.92
8410	13300	4.120331	GCCACCTTCCATGTGCGC	62.120	66.667	0.00	0.00	32.30	6.09
8412	13302	1.027357	CTATGCCACCTTCCATGTGC	58.973	55.000	0.00	0.00	32.30	4.57
8413	13303	2.092753	AGACTATGCCACCTTCCATGTG	60.093	50.000	0.00	0.00	0.00	3.21
8414	13304	2.200081	AGACTATGCCACCTTCCATGT	58.800	47.619	0.00	0.00	0.00	3.21
8415	13305	3.209410	GAAGACTATGCCACCTTCCATG	58.791	50.000	0.00	0.00	31.41	3.66
8418	13308	1.473434	CCGAAGACTATGCCACCTTCC	60.473	57.143	0.00	0.00	33.40	3.46
8419	13309	1.480954	TCCGAAGACTATGCCACCTTC	59.519	52.381	0.00	0.00	33.58	3.46
8420	13310	1.568504	TCCGAAGACTATGCCACCTT	58.431	50.000	0.00	0.00	0.00	3.50
8421	13311	1.794714	ATCCGAAGACTATGCCACCT	58.205	50.000	0.00	0.00	0.00	4.00
8438	13329	1.112113	TGGGCGGTGAAGAGTCTATC	58.888	55.000	0.00	0.00	0.00	2.08
8439	13330	0.824759	GTGGGCGGTGAAGAGTCTAT	59.175	55.000	0.00	0.00	0.00	1.98
8453	13344	1.032114	ATGCTTAAGGCGAAGTGGGC	61.032	55.000	4.29	0.00	45.43	5.36
8458	13349	7.907214	AAACCTATATATGCTTAAGGCGAAG	57.093	36.000	4.29	0.00	45.43	3.79
8475	13366	9.314321	CACAAAGTCATACGAGATTAAACCTAT	57.686	33.333	0.00	0.00	0.00	2.57
8478	13369	7.234384	CACACAAAGTCATACGAGATTAAACC	58.766	38.462	0.00	0.00	0.00	3.27
8480	13371	6.400621	CGCACACAAAGTCATACGAGATTAAA	60.401	38.462	0.00	0.00	0.00	1.52
8482	13373	4.561213	CGCACACAAAGTCATACGAGATTA	59.439	41.667	0.00	0.00	0.00	1.75
8483	13374	3.367932	CGCACACAAAGTCATACGAGATT	59.632	43.478	0.00	0.00	0.00	2.40
8484	13375	2.923655	CGCACACAAAGTCATACGAGAT	59.076	45.455	0.00	0.00	0.00	2.75
8485	13376	2.030628	TCGCACACAAAGTCATACGAGA	60.031	45.455	0.00	0.00	0.00	4.04
8486	13377	2.324860	TCGCACACAAAGTCATACGAG	58.675	47.619	0.00	0.00	0.00	4.18
8487	13378	2.324860	CTCGCACACAAAGTCATACGA	58.675	47.619	0.00	0.00	0.00	3.43
8488	13379	1.201812	GCTCGCACACAAAGTCATACG	60.202	52.381	0.00	0.00	0.00	3.06
8490	13381	1.067693	CGCTCGCACACAAAGTCATA	58.932	50.000	0.00	0.00	0.00	2.15
8491	13382	0.880278	ACGCTCGCACACAAAGTCAT	60.880	50.000	0.00	0.00	0.00	3.06
8493	13384	0.654472	CAACGCTCGCACACAAAGTC	60.654	55.000	0.00	0.00	0.00	3.01
8504	13414	3.026349	CACAGTTAAAACACAACGCTCG	58.974	45.455	0.00	0.00	0.00	5.03
8506	13416	4.392445	TGTACACAGTTAAAACACAACGCT	59.608	37.500	0.00	0.00	0.00	5.07
8507	13417	4.649977	TGTACACAGTTAAAACACAACGC	58.350	39.130	0.00	0.00	0.00	4.84
8519	13429	7.564793	TCTGCATAATTAGGATGTACACAGTT	58.435	34.615	0.00	0.00	0.00	3.16
8520	13430	7.069950	TCTCTGCATAATTAGGATGTACACAGT	59.930	37.037	0.00	0.00	0.00	3.55
8533	13443	6.621613	CATACGCCTAGTCTCTGCATAATTA	58.378	40.000	0.00	0.00	0.00	1.40
8535	13445	4.619394	GCATACGCCTAGTCTCTGCATAAT	60.619	45.833	0.00	0.00	34.79	1.28
8541	13451	2.226330	AGAGCATACGCCTAGTCTCTG	58.774	52.381	0.00	0.00	39.83	3.35
8546	13456	4.939052	ACATAAAGAGCATACGCCTAGT	57.061	40.909	0.00	0.00	39.83	2.57
8547	13457	5.523916	ACAAACATAAAGAGCATACGCCTAG	59.476	40.000	0.00	0.00	39.83	3.02
8549	13459	4.261801	ACAAACATAAAGAGCATACGCCT	58.738	39.130	0.00	0.00	39.83	5.52
8550	13460	4.616181	ACAAACATAAAGAGCATACGCC	57.384	40.909	0.00	0.00	39.83	5.68
8552	13462	9.210426	GACAATTACAAACATAAAGAGCATACG	57.790	33.333	0.00	0.00	0.00	3.06
8560	13470	8.888332	TGTATGCGACAATTACAAACATAAAG	57.112	30.769	0.00	0.00	34.15	1.85
8612	13522	6.360681	CACTGGCGACTTCTTTTTCAATAAAG	59.639	38.462	0.00	0.00	36.64	1.85
8618	13528	1.333619	GCACTGGCGACTTCTTTTTCA	59.666	47.619	0.00	0.00	0.00	2.69
8631	13541	2.095263	ACAACATATCAAACGCACTGGC	60.095	45.455	0.00	0.00	0.00	4.85
8634	13544	5.212194	GTCAAACAACATATCAAACGCACT	58.788	37.500	0.00	0.00	0.00	4.40
8635	13545	4.381566	GGTCAAACAACATATCAAACGCAC	59.618	41.667	0.00	0.00	0.00	5.34
8637	13547	3.602062	CGGTCAAACAACATATCAAACGC	59.398	43.478	0.00	0.00	0.00	4.84
8638	13548	5.024768	TCGGTCAAACAACATATCAAACG	57.975	39.130	0.00	0.00	0.00	3.60
8642	13552	4.332543	GCAGATCGGTCAAACAACATATCA	59.667	41.667	0.00	0.00	0.00	2.15
8645	13555	3.684305	CAGCAGATCGGTCAAACAACATA	59.316	43.478	0.00	0.00	0.00	2.29
8659	13569	8.922058	ATTGTCAACATAATTTTCAGCAGATC	57.078	30.769	0.00	0.00	0.00	2.75
8662	13572	8.577939	CGTTATTGTCAACATAATTTTCAGCAG	58.422	33.333	0.00	0.00	0.00	4.24
8668	13578	9.405587	CTTCACCGTTATTGTCAACATAATTTT	57.594	29.630	0.00	0.00	0.00	1.82
8670	13580	7.027161	GCTTCACCGTTATTGTCAACATAATT	58.973	34.615	0.00	0.00	0.00	1.40
8680	13590	3.004315	CCAAGTTGCTTCACCGTTATTGT	59.996	43.478	0.00	0.00	0.00	2.71
8684	13594	2.489971	CTCCAAGTTGCTTCACCGTTA	58.510	47.619	0.00	0.00	0.00	3.18
8687	13597	1.856265	GCCTCCAAGTTGCTTCACCG	61.856	60.000	0.00	0.00	0.00	4.94
8711	13621	3.922171	AGAGGATGTTGCCTTCTTAGG	57.078	47.619	0.00	0.00	45.02	2.69
8714	13624	3.515602	ACAAGAGGATGTTGCCTTCTT	57.484	42.857	0.00	0.00	44.23	2.52
8719	13629	6.759497	ACTTTAATACAAGAGGATGTTGCC	57.241	37.500	0.00	0.00	44.23	4.52
8720	13630	8.263940	TGTACTTTAATACAAGAGGATGTTGC	57.736	34.615	0.00	0.00	44.23	4.17
8726	13636	8.598916	TGGTGAATGTACTTTAATACAAGAGGA	58.401	33.333	0.00	0.00	38.53	3.71
8727	13637	8.786826	TGGTGAATGTACTTTAATACAAGAGG	57.213	34.615	0.00	0.00	38.53	3.69
8729	13639	9.952030	TGATGGTGAATGTACTTTAATACAAGA	57.048	29.630	0.00	0.00	38.53	3.02
8731	13641	9.952030	TCTGATGGTGAATGTACTTTAATACAA	57.048	29.630	0.00	0.00	38.53	2.41
8735	13645	9.520515	AAAGTCTGATGGTGAATGTACTTTAAT	57.479	29.630	0.00	0.00	34.97	1.40
8738	13648	7.285401	ACAAAAGTCTGATGGTGAATGTACTTT	59.715	33.333	0.00	0.00	37.48	2.66
8748	13681	5.168526	TCGAAAACAAAAGTCTGATGGTG	57.831	39.130	0.00	0.00	0.00	4.17
8749	13682	5.530915	TGATCGAAAACAAAAGTCTGATGGT	59.469	36.000	0.00	0.00	0.00	3.55
8751	13684	6.429624	TGTGATCGAAAACAAAAGTCTGATG	58.570	36.000	1.35	0.00	0.00	3.07
8752	13685	6.618287	TGTGATCGAAAACAAAAGTCTGAT	57.382	33.333	1.35	0.00	0.00	2.90
8753	13686	6.429624	CATGTGATCGAAAACAAAAGTCTGA	58.570	36.000	7.52	0.00	0.00	3.27
8768	13701	1.091771	GCTGTGGGTCCATGTGATCG	61.092	60.000	0.00	0.00	0.00	3.69
8775	13708	1.681666	CACTCAGCTGTGGGTCCAT	59.318	57.895	19.27	0.00	33.89	3.41
8782	13715	0.400213	TAAACCCCCACTCAGCTGTG	59.600	55.000	14.67	14.35	37.66	3.66
8783	13716	1.004745	CATAAACCCCCACTCAGCTGT	59.995	52.381	14.67	0.00	0.00	4.40
8784	13717	1.281867	TCATAAACCCCCACTCAGCTG	59.718	52.381	7.63	7.63	0.00	4.24
8785	13718	1.282157	GTCATAAACCCCCACTCAGCT	59.718	52.381	0.00	0.00	0.00	4.24
8786	13719	1.751437	GTCATAAACCCCCACTCAGC	58.249	55.000	0.00	0.00	0.00	4.26
8787	13720	1.406887	CCGTCATAAACCCCCACTCAG	60.407	57.143	0.00	0.00	0.00	3.35
8788	13721	0.616371	CCGTCATAAACCCCCACTCA	59.384	55.000	0.00	0.00	0.00	3.41
8789	13722	0.906775	TCCGTCATAAACCCCCACTC	59.093	55.000	0.00	0.00	0.00	3.51
8790	13723	1.364269	TTCCGTCATAAACCCCCACT	58.636	50.000	0.00	0.00	0.00	4.00
8791	13724	2.294979	GATTCCGTCATAAACCCCCAC	58.705	52.381	0.00	0.00	0.00	4.61
8792	13725	1.916874	TGATTCCGTCATAAACCCCCA	59.083	47.619	0.00	0.00	0.00	4.96
8793	13726	2.294979	GTGATTCCGTCATAAACCCCC	58.705	52.381	0.00	0.00	39.48	5.40
8794	13727	2.993937	TGTGATTCCGTCATAAACCCC	58.006	47.619	0.00	0.00	39.48	4.95
8795	13728	4.196193	TGATGTGATTCCGTCATAAACCC	58.804	43.478	0.00	0.00	39.48	4.11
8796	13729	5.811399	TTGATGTGATTCCGTCATAAACC	57.189	39.130	0.00	0.00	39.48	3.27
8797	13730	9.221775	GTTAATTGATGTGATTCCGTCATAAAC	57.778	33.333	0.00	0.00	39.48	2.01
8798	13731	9.173021	AGTTAATTGATGTGATTCCGTCATAAA	57.827	29.630	0.00	0.00	39.48	1.40
8799	13732	8.731275	AGTTAATTGATGTGATTCCGTCATAA	57.269	30.769	0.00	0.00	39.48	1.90
8800	13733	9.256477	GTAGTTAATTGATGTGATTCCGTCATA	57.744	33.333	0.00	0.00	39.48	2.15
8801	13734	7.987458	AGTAGTTAATTGATGTGATTCCGTCAT	59.013	33.333	0.00	0.00	39.48	3.06
8802	13735	7.327975	AGTAGTTAATTGATGTGATTCCGTCA	58.672	34.615	0.00	0.00	0.00	4.35
8803	13736	7.306051	CGAGTAGTTAATTGATGTGATTCCGTC	60.306	40.741	0.00	0.00	0.00	4.79
8804	13737	6.475727	CGAGTAGTTAATTGATGTGATTCCGT	59.524	38.462	0.00	0.00	0.00	4.69
8805	13738	6.475727	ACGAGTAGTTAATTGATGTGATTCCG	59.524	38.462	0.00	0.00	0.00	4.30
8806	13739	7.772332	ACGAGTAGTTAATTGATGTGATTCC	57.228	36.000	0.00	0.00	0.00	3.01
8807	13740	8.969267	CCTACGAGTAGTTAATTGATGTGATTC	58.031	37.037	9.15	0.00	0.00	2.52
8808	13741	8.475639	ACCTACGAGTAGTTAATTGATGTGATT	58.524	33.333	9.15	0.00	0.00	2.57
8809	13742	8.008513	ACCTACGAGTAGTTAATTGATGTGAT	57.991	34.615	9.15	0.00	0.00	3.06
8810	13743	7.338703	AGACCTACGAGTAGTTAATTGATGTGA	59.661	37.037	9.15	0.00	0.00	3.58
8811	13744	7.481642	AGACCTACGAGTAGTTAATTGATGTG	58.518	38.462	9.15	0.00	0.00	3.21
8812	13745	7.642082	AGACCTACGAGTAGTTAATTGATGT	57.358	36.000	9.15	0.00	0.00	3.06
8813	13746	7.804129	GCTAGACCTACGAGTAGTTAATTGATG	59.196	40.741	9.15	0.00	0.00	3.07
8814	13747	7.501559	TGCTAGACCTACGAGTAGTTAATTGAT	59.498	37.037	9.15	0.00	0.00	2.57
8815	13748	6.825213	TGCTAGACCTACGAGTAGTTAATTGA	59.175	38.462	9.15	0.00	0.00	2.57
8816	13749	7.024340	TGCTAGACCTACGAGTAGTTAATTG	57.976	40.000	9.15	0.00	0.00	2.32
8817	13750	7.820578	ATGCTAGACCTACGAGTAGTTAATT	57.179	36.000	9.15	0.00	0.00	1.40
8818	13751	7.820578	AATGCTAGACCTACGAGTAGTTAAT	57.179	36.000	9.15	0.00	0.00	1.40
8819	13752	7.636150	AAATGCTAGACCTACGAGTAGTTAA	57.364	36.000	9.15	0.00	0.00	2.01
8820	13753	7.636150	AAAATGCTAGACCTACGAGTAGTTA	57.364	36.000	9.15	0.00	0.00	2.24
8821	13754	6.527057	AAAATGCTAGACCTACGAGTAGTT	57.473	37.500	9.15	0.00	0.00	2.24
8822	13755	6.331061	CAAAAATGCTAGACCTACGAGTAGT	58.669	40.000	9.15	0.00	0.00	2.73
8823	13756	5.232414	GCAAAAATGCTAGACCTACGAGTAG	59.768	44.000	0.00	3.39	0.00	2.57
8824	13757	5.105473	AGCAAAAATGCTAGACCTACGAGTA	60.105	40.000	0.67	0.00	44.28	2.59
8825	13758	3.933332	GCAAAAATGCTAGACCTACGAGT	59.067	43.478	0.00	0.00	0.00	4.18
8826	13759	4.184629	AGCAAAAATGCTAGACCTACGAG	58.815	43.478	0.67	0.00	44.28	4.18
8827	13760	4.202245	AGCAAAAATGCTAGACCTACGA	57.798	40.909	0.67	0.00	44.28	3.43
8828	13761	4.868171	TGTAGCAAAAATGCTAGACCTACG	59.132	41.667	10.58	0.00	46.59	3.51
8829	13762	6.927294	ATGTAGCAAAAATGCTAGACCTAC	57.073	37.500	10.58	2.07	46.59	3.18
8830	13763	7.561251	TGTATGTAGCAAAAATGCTAGACCTA	58.439	34.615	10.58	0.00	46.59	3.08
8831	13764	6.414732	TGTATGTAGCAAAAATGCTAGACCT	58.585	36.000	10.58	0.00	46.59	3.85
8832	13765	6.677781	TGTATGTAGCAAAAATGCTAGACC	57.322	37.500	10.58	5.46	46.59	3.85
8833	13766	7.641411	CACATGTATGTAGCAAAAATGCTAGAC	59.359	37.037	10.58	9.68	46.59	2.59
8834	13767	7.679400	GCACATGTATGTAGCAAAAATGCTAGA	60.679	37.037	10.58	10.11	46.59	2.43
8835	13768	6.415867	GCACATGTATGTAGCAAAAATGCTAG	59.584	38.462	10.58	1.05	46.59	3.42
8836	13769	6.127786	TGCACATGTATGTAGCAAAAATGCTA	60.128	34.615	14.98	6.45	45.47	3.49
8837	13770	6.793759	TTGCACATGTATGTAGCAAAAATGCT	60.794	34.615	21.32	8.53	44.07	3.79
8838	13771	4.863689	TGCACATGTATGTAGCAAAAATGC	59.136	37.500	14.98	0.00	39.77	3.56
8839	13772	6.947903	TTGCACATGTATGTAGCAAAAATG	57.052	33.333	21.32	0.00	44.07	2.32
8844	13777	7.150640	TGAAAATTTGCACATGTATGTAGCAA	58.849	30.769	20.46	20.46	44.66	3.91
8845	13778	6.685657	TGAAAATTTGCACATGTATGTAGCA	58.314	32.000	0.00	13.97	39.39	3.49
8846	13779	7.614908	CATGAAAATTTGCACATGTATGTAGC	58.385	34.615	0.00	0.00	39.39	3.58
8854	13787	7.640616	TCAACTACATGAAAATTTGCACATG	57.359	32.000	21.09	21.09	43.56	3.21
8863	13796	7.472334	AAAGGAGCATCAACTACATGAAAAT	57.528	32.000	0.00	0.00	36.25	1.82
8903	13840	1.372997	CACGTTCTCTGGACCCACG	60.373	63.158	0.00	0.00	36.91	4.94
8906	13843	2.347731	GAAATCACGTTCTCTGGACCC	58.652	52.381	0.00	0.00	0.00	4.46
8908	13845	1.993370	CCGAAATCACGTTCTCTGGAC	59.007	52.381	0.00	0.00	0.00	4.02
8911	13848	1.391485	CAGCCGAAATCACGTTCTCTG	59.609	52.381	0.00	0.00	0.00	3.35
8924	13861	0.383949	GTGGTTTGAAAGCAGCCGAA	59.616	50.000	10.38	0.00	39.94	4.30
8943	13880	5.971895	GACGGTAGTCTGAGACTTACTAG	57.028	47.826	21.49	14.96	40.28	2.57
8973	13910	9.776158	CGCCAAATATGTACTGTTATGTTTAAA	57.224	29.630	0.00	0.00	0.00	1.52
8974	13911	9.163899	TCGCCAAATATGTACTGTTATGTTTAA	57.836	29.630	0.00	0.00	0.00	1.52
8976	13913	7.335924	AGTCGCCAAATATGTACTGTTATGTTT	59.664	33.333	0.00	0.00	0.00	2.83
8977	13914	6.821665	AGTCGCCAAATATGTACTGTTATGTT	59.178	34.615	0.00	0.00	0.00	2.71
8978	13915	6.257849	CAGTCGCCAAATATGTACTGTTATGT	59.742	38.462	0.00	0.00	30.91	2.29
8979	13916	6.649436	CAGTCGCCAAATATGTACTGTTATG	58.351	40.000	0.00	0.00	30.91	1.90
8980	13917	5.236478	GCAGTCGCCAAATATGTACTGTTAT	59.764	40.000	0.00	0.00	34.71	1.89
8982	13919	3.374058	GCAGTCGCCAAATATGTACTGTT	59.626	43.478	0.00	0.00	34.71	3.16
8983	13920	2.936498	GCAGTCGCCAAATATGTACTGT	59.064	45.455	0.00	0.00	34.71	3.55
8985	13922	3.543680	AGCAGTCGCCAAATATGTACT	57.456	42.857	0.00	0.00	39.83	2.73
8986	13923	4.116961	TGTAGCAGTCGCCAAATATGTAC	58.883	43.478	0.00	0.00	39.83	2.90
8988	13925	3.260475	TGTAGCAGTCGCCAAATATGT	57.740	42.857	0.00	0.00	39.83	2.29
9067	14062	3.530260	GTATCGGACGGCGGGGAA	61.530	66.667	13.24	0.00	0.00	3.97
9298	16322	3.338676	GATGATTCGGGTCGGCGC	61.339	66.667	0.00	0.00	0.00	6.53
9476	19241	3.343617	GGAAGAACATCGGTGGATTTCA	58.656	45.455	0.00	0.00	0.00	2.69
9536	20154	3.611113	AGTTAATACAAGCACGTACGCTG	59.389	43.478	16.72	13.72	42.89	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.