Multiple sequence alignment - TraesCS2D01G134800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G134800 chr2D 100.000 2961 0 0 369 3329 79342646 79339686 0.000000e+00 5469.0
1 TraesCS2D01G134800 chr2D 83.807 352 45 9 751 1092 76484048 76483699 1.150000e-84 324.0
2 TraesCS2D01G134800 chr2D 100.000 135 0 0 1 135 79343014 79342880 1.980000e-62 250.0
3 TraesCS2D01G134800 chr2D 94.231 52 2 1 587 638 79273421 79273371 9.900000e-11 78.7
4 TraesCS2D01G134800 chr3B 86.424 2615 325 16 721 3329 114087995 114090585 0.000000e+00 2835.0
5 TraesCS2D01G134800 chr3B 98.148 216 4 0 371 586 661736414 661736629 8.720000e-101 377.0
6 TraesCS2D01G134800 chr3B 98.148 216 4 0 371 586 661769105 661769320 8.720000e-101 377.0
7 TraesCS2D01G134800 chr3B 97.222 216 6 0 371 586 584537562 584537777 1.890000e-97 366.0
8 TraesCS2D01G134800 chr5D 82.270 2617 442 17 721 3329 380535671 380533069 0.000000e+00 2242.0
9 TraesCS2D01G134800 chr5D 86.131 1406 183 4 721 2126 233415408 233416801 0.000000e+00 1506.0
10 TraesCS2D01G134800 chr5D 84.416 924 133 8 2377 3293 233416812 233417731 0.000000e+00 898.0
11 TraesCS2D01G134800 chr5D 98.519 135 2 0 1 135 8633227 8633361 4.290000e-59 239.0
12 TraesCS2D01G134800 chr6B 81.752 2625 407 46 721 3324 611508135 611510708 0.000000e+00 2128.0
13 TraesCS2D01G134800 chr6B 86.592 1156 140 9 2124 3273 629448386 629449532 0.000000e+00 1262.0
14 TraesCS2D01G134800 chr6B 95.633 229 6 4 371 597 271916443 271916217 6.790000e-97 364.0
15 TraesCS2D01G134800 chr5B 87.410 1390 166 7 1946 3329 263933142 263931756 0.000000e+00 1589.0
16 TraesCS2D01G134800 chr5B 89.973 748 72 1 1130 1877 263934289 263933545 0.000000e+00 963.0
17 TraesCS2D01G134800 chr2A 81.243 1706 298 17 1397 3089 516294413 516292717 0.000000e+00 1358.0
18 TraesCS2D01G134800 chr2A 98.519 135 2 0 1 135 16575869 16576003 4.290000e-59 239.0
19 TraesCS2D01G134800 chr2A 97.778 135 3 0 1 135 16571630 16571764 2.000000e-57 233.0
20 TraesCS2D01G134800 chr2B 83.191 940 148 7 2392 3324 231596438 231597374 0.000000e+00 852.0
21 TraesCS2D01G134800 chr2B 98.519 135 1 1 1 135 32135220 32135087 1.540000e-58 237.0
22 TraesCS2D01G134800 chr2B 97.778 135 3 0 1 135 673232967 673233101 2.000000e-57 233.0
23 TraesCS2D01G134800 chr2B 89.855 138 12 2 587 722 128340772 128340635 3.410000e-40 176.0
24 TraesCS2D01G134800 chr5A 76.312 1372 301 20 1972 3329 129259978 129258617 0.000000e+00 712.0
25 TraesCS2D01G134800 chr5A 97.235 217 4 2 371 586 564582351 564582566 1.890000e-97 366.0
26 TraesCS2D01G134800 chr1B 97.706 218 3 2 371 587 31227675 31227891 1.130000e-99 374.0
27 TraesCS2D01G134800 chr1B 97.235 217 4 2 371 586 8964119 8964334 1.890000e-97 366.0
28 TraesCS2D01G134800 chr1B 97.778 135 3 0 1 135 670050921 670051055 2.000000e-57 233.0
29 TraesCS2D01G134800 chr4A 97.222 216 6 0 371 586 690240930 690240715 1.890000e-97 366.0
30 TraesCS2D01G134800 chr4A 97.778 135 3 0 1 135 686389021 686388887 2.000000e-57 233.0
31 TraesCS2D01G134800 chr4D 97.222 216 5 1 371 586 400919183 400919397 6.790000e-97 364.0
32 TraesCS2D01G134800 chr7A 83.333 342 53 2 2991 3329 221961643 221961983 2.490000e-81 313.0
33 TraesCS2D01G134800 chrUn 97.778 135 3 0 1 135 282690004 282690138 2.000000e-57 233.0
34 TraesCS2D01G134800 chr1D 97.778 135 3 0 1 135 63017855 63017721 2.000000e-57 233.0
35 TraesCS2D01G134800 chr3D 71.674 639 167 11 1034 1662 11708545 11709179 7.390000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G134800 chr2D 79339686 79343014 3328 True 2859.5 5469 100.0000 1 3329 2 chr2D.!!$R3 3328
1 TraesCS2D01G134800 chr3B 114087995 114090585 2590 False 2835.0 2835 86.4240 721 3329 1 chr3B.!!$F1 2608
2 TraesCS2D01G134800 chr5D 380533069 380535671 2602 True 2242.0 2242 82.2700 721 3329 1 chr5D.!!$R1 2608
3 TraesCS2D01G134800 chr5D 233415408 233417731 2323 False 1202.0 1506 85.2735 721 3293 2 chr5D.!!$F2 2572
4 TraesCS2D01G134800 chr6B 611508135 611510708 2573 False 2128.0 2128 81.7520 721 3324 1 chr6B.!!$F1 2603
5 TraesCS2D01G134800 chr6B 629448386 629449532 1146 False 1262.0 1262 86.5920 2124 3273 1 chr6B.!!$F2 1149
6 TraesCS2D01G134800 chr5B 263931756 263934289 2533 True 1276.0 1589 88.6915 1130 3329 2 chr5B.!!$R1 2199
7 TraesCS2D01G134800 chr2A 516292717 516294413 1696 True 1358.0 1358 81.2430 1397 3089 1 chr2A.!!$R1 1692
8 TraesCS2D01G134800 chr2B 231596438 231597374 936 False 852.0 852 83.1910 2392 3324 1 chr2B.!!$F1 932
9 TraesCS2D01G134800 chr5A 129258617 129259978 1361 True 712.0 712 76.3120 1972 3329 1 chr5A.!!$R1 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.036388 ACATCGACCACGGCATTCTT 60.036 50.0 0.0 0.0 40.21 2.52 F
90 91 0.100682 GCTCTCGGCTACATCGACAA 59.899 55.0 0.0 0.0 38.06 3.18 F
748 749 0.106419 TTCCGTTGCTTTGGGGAAGT 60.106 50.0 0.0 0.0 37.69 3.01 F
2036 2380 0.107945 GAGCAGGCAACGGAGAAGAT 60.108 55.0 0.0 0.0 46.39 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2318 0.322816 ACCTACTCTGCGGACCGTTA 60.323 55.0 16.73 4.23 0.00 3.18 R
2073 2417 0.035152 TGTCATCTGAAGCGCCCAAT 60.035 50.0 2.29 0.00 0.00 3.16 R
2247 2591 0.400525 ATGGGATCCCGGATGTCACT 60.401 55.0 26.03 0.00 39.42 3.41 R
2976 3336 0.388134 GTCGCGGTCACTTTCAGCTA 60.388 55.0 6.13 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.753043 GGCTACCCCGACTCGACA 60.753 66.667 0.00 0.00 0.00 4.35
19 20 2.125961 GGCTACCCCGACTCGACAT 61.126 63.158 0.00 0.00 0.00 3.06
20 21 1.359475 GCTACCCCGACTCGACATC 59.641 63.158 0.00 0.00 0.00 3.06
21 22 1.647629 CTACCCCGACTCGACATCG 59.352 63.158 0.00 7.25 39.33 3.84
23 24 1.091771 TACCCCGACTCGACATCGAC 61.092 60.000 14.38 0.00 44.22 4.20
24 25 2.408022 CCCGACTCGACATCGACC 59.592 66.667 14.38 0.00 44.22 4.79
25 26 2.404186 CCCGACTCGACATCGACCA 61.404 63.158 14.38 0.00 44.22 4.02
26 27 1.226323 CCGACTCGACATCGACCAC 60.226 63.158 14.38 0.00 44.22 4.16
27 28 1.580385 CGACTCGACATCGACCACG 60.580 63.158 8.33 3.20 44.22 4.94
28 29 1.226323 GACTCGACATCGACCACGG 60.226 63.158 0.00 0.00 44.22 4.94
29 30 2.579787 CTCGACATCGACCACGGC 60.580 66.667 0.00 0.00 44.22 5.68
30 31 3.336715 CTCGACATCGACCACGGCA 62.337 63.158 0.00 0.00 44.22 5.69
31 32 2.202743 CGACATCGACCACGGCAT 60.203 61.111 0.00 0.00 43.02 4.40
32 33 1.809619 CGACATCGACCACGGCATT 60.810 57.895 0.00 0.00 43.02 3.56
33 34 1.752501 CGACATCGACCACGGCATTC 61.753 60.000 0.00 0.00 43.02 2.67
34 35 0.460284 GACATCGACCACGGCATTCT 60.460 55.000 0.00 0.00 40.21 2.40
35 36 0.036388 ACATCGACCACGGCATTCTT 60.036 50.000 0.00 0.00 40.21 2.52
36 37 0.652592 CATCGACCACGGCATTCTTC 59.347 55.000 0.00 0.00 40.21 2.87
37 38 0.806102 ATCGACCACGGCATTCTTCG 60.806 55.000 0.00 0.00 40.21 3.79
38 39 2.785258 GACCACGGCATTCTTCGC 59.215 61.111 0.00 0.00 0.00 4.70
39 40 2.031919 ACCACGGCATTCTTCGCA 59.968 55.556 0.00 0.00 0.00 5.10
40 41 1.369091 GACCACGGCATTCTTCGCAT 61.369 55.000 0.00 0.00 0.00 4.73
41 42 1.063006 CCACGGCATTCTTCGCATG 59.937 57.895 0.00 0.00 0.00 4.06
42 43 1.063006 CACGGCATTCTTCGCATGG 59.937 57.895 0.00 0.00 0.00 3.66
43 44 2.025156 CGGCATTCTTCGCATGGC 59.975 61.111 0.00 0.00 42.42 4.40
44 45 2.475466 CGGCATTCTTCGCATGGCT 61.475 57.895 6.07 0.00 43.40 4.75
45 46 1.159713 CGGCATTCTTCGCATGGCTA 61.160 55.000 6.07 0.00 43.40 3.93
46 47 0.308993 GGCATTCTTCGCATGGCTAC 59.691 55.000 0.00 0.00 42.53 3.58
47 48 0.308993 GCATTCTTCGCATGGCTACC 59.691 55.000 0.00 0.00 0.00 3.18
48 49 1.959042 CATTCTTCGCATGGCTACCT 58.041 50.000 0.00 0.00 0.00 3.08
49 50 1.869767 CATTCTTCGCATGGCTACCTC 59.130 52.381 0.00 0.00 0.00 3.85
50 51 0.179111 TTCTTCGCATGGCTACCTCG 60.179 55.000 0.00 0.00 0.00 4.63
51 52 1.035385 TCTTCGCATGGCTACCTCGA 61.035 55.000 0.00 0.00 0.00 4.04
52 53 0.872021 CTTCGCATGGCTACCTCGAC 60.872 60.000 0.00 0.00 0.00 4.20
53 54 2.279517 CGCATGGCTACCTCGACC 60.280 66.667 0.00 0.00 0.00 4.79
54 55 2.900273 GCATGGCTACCTCGACCA 59.100 61.111 0.00 0.00 37.99 4.02
55 56 1.521681 GCATGGCTACCTCGACCAC 60.522 63.158 0.00 0.00 35.99 4.16
56 57 1.226974 CATGGCTACCTCGACCACG 60.227 63.158 0.00 0.00 35.99 4.94
57 58 2.423898 ATGGCTACCTCGACCACGG 61.424 63.158 0.00 0.00 40.21 4.94
58 59 4.509737 GGCTACCTCGACCACGGC 62.510 72.222 0.00 0.00 40.21 5.68
59 60 3.450115 GCTACCTCGACCACGGCT 61.450 66.667 0.00 0.00 40.21 5.52
60 61 2.799371 CTACCTCGACCACGGCTC 59.201 66.667 0.00 0.00 40.21 4.70
61 62 2.753043 TACCTCGACCACGGCTCC 60.753 66.667 0.00 0.00 40.21 4.70
62 63 3.572447 TACCTCGACCACGGCTCCA 62.572 63.158 0.00 0.00 40.21 3.86
63 64 4.436998 CCTCGACCACGGCTCCAC 62.437 72.222 0.00 0.00 40.21 4.02
64 65 4.436998 CTCGACCACGGCTCCACC 62.437 72.222 0.00 0.00 40.21 4.61
67 68 4.699522 GACCACGGCTCCACCACC 62.700 72.222 0.00 0.00 39.03 4.61
75 76 3.314331 CTCCACCACCCACGCTCT 61.314 66.667 0.00 0.00 0.00 4.09
76 77 3.302347 CTCCACCACCCACGCTCTC 62.302 68.421 0.00 0.00 0.00 3.20
77 78 4.742201 CCACCACCCACGCTCTCG 62.742 72.222 0.00 0.00 42.43 4.04
78 79 4.742201 CACCACCCACGCTCTCGG 62.742 72.222 0.00 0.00 40.69 4.63
81 82 3.449227 CACCCACGCTCTCGGCTA 61.449 66.667 0.00 0.00 40.69 3.93
82 83 3.450115 ACCCACGCTCTCGGCTAC 61.450 66.667 0.00 0.00 40.69 3.58
83 84 3.449227 CCCACGCTCTCGGCTACA 61.449 66.667 0.00 0.00 40.69 2.74
84 85 2.786495 CCCACGCTCTCGGCTACAT 61.786 63.158 0.00 0.00 40.69 2.29
85 86 1.299468 CCACGCTCTCGGCTACATC 60.299 63.158 0.00 0.00 40.69 3.06
86 87 1.655654 CACGCTCTCGGCTACATCG 60.656 63.158 0.00 0.00 40.69 3.84
87 88 1.818363 ACGCTCTCGGCTACATCGA 60.818 57.895 0.00 0.00 40.69 3.59
88 89 1.369448 CGCTCTCGGCTACATCGAC 60.369 63.158 0.00 0.00 39.13 4.20
89 90 1.728069 GCTCTCGGCTACATCGACA 59.272 57.895 0.00 0.00 38.06 4.35
90 91 0.100682 GCTCTCGGCTACATCGACAA 59.899 55.000 0.00 0.00 38.06 3.18
91 92 1.469251 GCTCTCGGCTACATCGACAAA 60.469 52.381 0.00 0.00 38.06 2.83
92 93 2.799917 GCTCTCGGCTACATCGACAAAT 60.800 50.000 0.00 0.00 38.06 2.32
93 94 2.791560 CTCTCGGCTACATCGACAAATG 59.208 50.000 0.00 0.00 32.86 2.32
94 95 1.860950 CTCGGCTACATCGACAAATGG 59.139 52.381 0.00 0.00 32.86 3.16
95 96 0.304705 CGGCTACATCGACAAATGGC 59.695 55.000 0.00 0.00 0.00 4.40
96 97 1.378531 GGCTACATCGACAAATGGCA 58.621 50.000 0.00 0.00 0.00 4.92
97 98 1.064060 GGCTACATCGACAAATGGCAC 59.936 52.381 0.00 0.00 0.00 5.01
109 110 2.033448 TGGCACAAAGGGCTACCG 59.967 61.111 0.00 0.00 37.31 4.02
110 111 3.440415 GGCACAAAGGGCTACCGC 61.440 66.667 0.00 0.00 43.47 5.68
120 121 3.490890 GCTACCGCCTTGCTTGAG 58.509 61.111 0.00 0.00 0.00 3.02
121 122 2.754995 GCTACCGCCTTGCTTGAGC 61.755 63.158 0.00 0.00 42.50 4.26
131 132 3.159984 GCTTGAGCAACCTCGTCG 58.840 61.111 0.00 0.00 41.13 5.12
132 133 2.383527 GCTTGAGCAACCTCGTCGG 61.384 63.158 0.00 0.00 41.13 4.79
387 388 2.979130 CGCCTTCGGATTCTTCTCC 58.021 57.895 0.00 0.00 0.00 3.71
388 389 0.175760 CGCCTTCGGATTCTTCTCCA 59.824 55.000 0.00 0.00 34.78 3.86
389 390 1.804372 CGCCTTCGGATTCTTCTCCAG 60.804 57.143 0.00 0.00 34.78 3.86
390 391 1.208293 GCCTTCGGATTCTTCTCCAGT 59.792 52.381 0.00 0.00 34.78 4.00
391 392 2.740256 GCCTTCGGATTCTTCTCCAGTC 60.740 54.545 0.00 0.00 34.78 3.51
392 393 2.763448 CCTTCGGATTCTTCTCCAGTCT 59.237 50.000 0.00 0.00 34.78 3.24
393 394 3.181480 CCTTCGGATTCTTCTCCAGTCTC 60.181 52.174 0.00 0.00 34.78 3.36
394 395 3.087370 TCGGATTCTTCTCCAGTCTCA 57.913 47.619 0.00 0.00 34.78 3.27
395 396 2.755655 TCGGATTCTTCTCCAGTCTCAC 59.244 50.000 0.00 0.00 34.78 3.51
396 397 2.159170 CGGATTCTTCTCCAGTCTCACC 60.159 54.545 0.00 0.00 34.78 4.02
397 398 2.159170 GGATTCTTCTCCAGTCTCACCG 60.159 54.545 0.00 0.00 35.24 4.94
398 399 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
399 400 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
400 401 1.074084 TCTTCTCCAGTCTCACCGTCT 59.926 52.381 0.00 0.00 0.00 4.18
401 402 1.201181 CTTCTCCAGTCTCACCGTCTG 59.799 57.143 0.00 0.00 0.00 3.51
402 403 1.214062 CTCCAGTCTCACCGTCTGC 59.786 63.158 0.00 0.00 0.00 4.26
403 404 2.126307 CCAGTCTCACCGTCTGCG 60.126 66.667 0.00 0.00 37.95 5.18
404 405 2.645567 CAGTCTCACCGTCTGCGT 59.354 61.111 0.00 0.00 36.15 5.24
405 406 1.442857 CAGTCTCACCGTCTGCGTC 60.443 63.158 0.00 0.00 36.15 5.19
406 407 2.502080 GTCTCACCGTCTGCGTCG 60.502 66.667 0.00 0.00 36.15 5.12
407 408 4.400109 TCTCACCGTCTGCGTCGC 62.400 66.667 11.10 11.10 36.15 5.19
408 409 4.406173 CTCACCGTCTGCGTCGCT 62.406 66.667 19.50 0.00 36.15 4.93
409 410 3.035576 CTCACCGTCTGCGTCGCTA 62.036 63.158 19.50 3.59 36.15 4.26
410 411 2.874780 CACCGTCTGCGTCGCTAC 60.875 66.667 19.50 15.00 36.15 3.58
411 412 4.112341 ACCGTCTGCGTCGCTACC 62.112 66.667 19.50 4.72 36.15 3.18
413 414 4.456253 CGTCTGCGTCGCTACCGT 62.456 66.667 19.50 0.00 35.54 4.83
414 415 2.126580 GTCTGCGTCGCTACCGTT 60.127 61.111 19.50 0.00 35.54 4.44
415 416 2.126618 TCTGCGTCGCTACCGTTG 60.127 61.111 19.50 0.42 35.54 4.10
416 417 2.430244 CTGCGTCGCTACCGTTGT 60.430 61.111 19.50 0.00 35.54 3.32
417 418 2.716828 CTGCGTCGCTACCGTTGTG 61.717 63.158 19.50 0.00 35.54 3.33
418 419 2.429571 GCGTCGCTACCGTTGTGA 60.430 61.111 10.68 0.00 35.54 3.58
419 420 2.713894 GCGTCGCTACCGTTGTGAC 61.714 63.158 10.68 14.36 40.38 3.67
420 421 1.081641 CGTCGCTACCGTTGTGACT 60.082 57.895 19.68 0.00 41.26 3.41
421 422 1.334992 CGTCGCTACCGTTGTGACTG 61.335 60.000 19.68 12.04 41.26 3.51
422 423 1.372499 TCGCTACCGTTGTGACTGC 60.372 57.895 0.00 0.00 35.54 4.40
423 424 1.663388 CGCTACCGTTGTGACTGCA 60.663 57.895 0.00 0.00 0.00 4.41
424 425 1.617755 CGCTACCGTTGTGACTGCAG 61.618 60.000 13.48 13.48 0.00 4.41
425 426 1.291877 GCTACCGTTGTGACTGCAGG 61.292 60.000 19.93 0.00 0.00 4.85
426 427 0.670546 CTACCGTTGTGACTGCAGGG 60.671 60.000 19.93 10.03 0.00 4.45
427 428 2.107041 TACCGTTGTGACTGCAGGGG 62.107 60.000 19.93 9.40 0.00 4.79
428 429 2.669569 CGTTGTGACTGCAGGGGG 60.670 66.667 19.93 0.00 0.00 5.40
429 430 2.836154 GTTGTGACTGCAGGGGGA 59.164 61.111 19.93 0.00 0.00 4.81
430 431 1.380302 GTTGTGACTGCAGGGGGAT 59.620 57.895 19.93 0.00 0.00 3.85
431 432 0.962356 GTTGTGACTGCAGGGGGATG 60.962 60.000 19.93 0.00 0.00 3.51
432 433 1.426251 TTGTGACTGCAGGGGGATGT 61.426 55.000 19.93 0.00 0.00 3.06
433 434 1.380302 GTGACTGCAGGGGGATGTT 59.620 57.895 19.93 0.00 0.00 2.71
434 435 0.962356 GTGACTGCAGGGGGATGTTG 60.962 60.000 19.93 0.00 0.00 3.33
435 436 1.133181 TGACTGCAGGGGGATGTTGA 61.133 55.000 19.93 0.00 0.00 3.18
436 437 0.393537 GACTGCAGGGGGATGTTGAG 60.394 60.000 19.93 0.00 0.00 3.02
437 438 1.136329 ACTGCAGGGGGATGTTGAGT 61.136 55.000 19.93 0.00 0.00 3.41
438 439 0.911769 CTGCAGGGGGATGTTGAGTA 59.088 55.000 5.57 0.00 0.00 2.59
439 440 1.492176 CTGCAGGGGGATGTTGAGTAT 59.508 52.381 5.57 0.00 0.00 2.12
440 441 2.705658 CTGCAGGGGGATGTTGAGTATA 59.294 50.000 5.57 0.00 0.00 1.47
441 442 3.119319 TGCAGGGGGATGTTGAGTATAA 58.881 45.455 0.00 0.00 0.00 0.98
442 443 3.721575 TGCAGGGGGATGTTGAGTATAAT 59.278 43.478 0.00 0.00 0.00 1.28
443 444 4.074970 GCAGGGGGATGTTGAGTATAATG 58.925 47.826 0.00 0.00 0.00 1.90
444 445 4.446311 GCAGGGGGATGTTGAGTATAATGT 60.446 45.833 0.00 0.00 0.00 2.71
445 446 5.694995 CAGGGGGATGTTGAGTATAATGTT 58.305 41.667 0.00 0.00 0.00 2.71
446 447 6.129179 CAGGGGGATGTTGAGTATAATGTTT 58.871 40.000 0.00 0.00 0.00 2.83
447 448 7.287061 CAGGGGGATGTTGAGTATAATGTTTA 58.713 38.462 0.00 0.00 0.00 2.01
448 449 7.944554 CAGGGGGATGTTGAGTATAATGTTTAT 59.055 37.037 0.00 0.00 0.00 1.40
449 450 8.511126 AGGGGGATGTTGAGTATAATGTTTATT 58.489 33.333 0.00 0.00 0.00 1.40
450 451 9.802039 GGGGGATGTTGAGTATAATGTTTATTA 57.198 33.333 0.00 0.00 33.54 0.98
467 468 9.968870 ATGTTTATTAGGAAAGACGAGATAGAC 57.031 33.333 0.00 0.00 0.00 2.59
468 469 9.186837 TGTTTATTAGGAAAGACGAGATAGACT 57.813 33.333 0.00 0.00 0.00 3.24
471 472 7.989416 ATTAGGAAAGACGAGATAGACTAGG 57.011 40.000 0.00 0.00 0.00 3.02
472 473 5.633655 AGGAAAGACGAGATAGACTAGGA 57.366 43.478 0.00 0.00 0.00 2.94
473 474 6.195600 AGGAAAGACGAGATAGACTAGGAT 57.804 41.667 0.00 0.00 0.00 3.24
474 475 6.607019 AGGAAAGACGAGATAGACTAGGATT 58.393 40.000 0.00 0.00 0.00 3.01
475 476 7.064229 AGGAAAGACGAGATAGACTAGGATTT 58.936 38.462 0.00 0.00 0.00 2.17
476 477 7.013846 AGGAAAGACGAGATAGACTAGGATTTG 59.986 40.741 0.00 0.00 0.00 2.32
477 478 7.201839 GGAAAGACGAGATAGACTAGGATTTGT 60.202 40.741 0.00 0.00 0.00 2.83
478 479 7.648039 AAGACGAGATAGACTAGGATTTGTT 57.352 36.000 0.00 0.00 0.00 2.83
479 480 7.266922 AGACGAGATAGACTAGGATTTGTTC 57.733 40.000 0.00 0.00 0.00 3.18
480 481 7.057894 AGACGAGATAGACTAGGATTTGTTCT 58.942 38.462 0.00 0.00 0.00 3.01
481 482 7.012894 AGACGAGATAGACTAGGATTTGTTCTG 59.987 40.741 0.00 0.00 0.00 3.02
482 483 6.039941 ACGAGATAGACTAGGATTTGTTCTGG 59.960 42.308 0.00 0.00 0.00 3.86
483 484 6.168270 AGATAGACTAGGATTTGTTCTGGC 57.832 41.667 0.00 0.00 0.00 4.85
484 485 5.902431 AGATAGACTAGGATTTGTTCTGGCT 59.098 40.000 0.00 0.00 0.00 4.75
485 486 4.917906 AGACTAGGATTTGTTCTGGCTT 57.082 40.909 0.00 0.00 0.00 4.35
486 487 4.583871 AGACTAGGATTTGTTCTGGCTTG 58.416 43.478 0.00 0.00 0.00 4.01
487 488 4.042187 AGACTAGGATTTGTTCTGGCTTGT 59.958 41.667 0.00 0.00 0.00 3.16
488 489 4.327680 ACTAGGATTTGTTCTGGCTTGTC 58.672 43.478 0.00 0.00 0.00 3.18
489 490 3.515602 AGGATTTGTTCTGGCTTGTCT 57.484 42.857 0.00 0.00 0.00 3.41
490 491 3.837355 AGGATTTGTTCTGGCTTGTCTT 58.163 40.909 0.00 0.00 0.00 3.01
491 492 3.571401 AGGATTTGTTCTGGCTTGTCTTG 59.429 43.478 0.00 0.00 0.00 3.02
492 493 3.319122 GGATTTGTTCTGGCTTGTCTTGT 59.681 43.478 0.00 0.00 0.00 3.16
493 494 4.518970 GGATTTGTTCTGGCTTGTCTTGTA 59.481 41.667 0.00 0.00 0.00 2.41
494 495 4.893424 TTTGTTCTGGCTTGTCTTGTAC 57.107 40.909 0.00 0.00 0.00 2.90
495 496 3.838244 TGTTCTGGCTTGTCTTGTACT 57.162 42.857 0.00 0.00 0.00 2.73
496 497 3.728845 TGTTCTGGCTTGTCTTGTACTC 58.271 45.455 0.00 0.00 0.00 2.59
497 498 3.067833 GTTCTGGCTTGTCTTGTACTCC 58.932 50.000 0.00 0.00 0.00 3.85
498 499 2.325484 TCTGGCTTGTCTTGTACTCCA 58.675 47.619 0.00 0.00 0.00 3.86
499 500 2.703536 TCTGGCTTGTCTTGTACTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
513 514 8.635877 CTTGTACTCCAAGTAGATGATTGTAC 57.364 38.462 0.00 0.00 44.64 2.90
514 515 7.956328 TGTACTCCAAGTAGATGATTGTACT 57.044 36.000 0.00 0.00 33.59 2.73
515 516 7.997482 TGTACTCCAAGTAGATGATTGTACTC 58.003 38.462 0.00 0.00 31.09 2.59
516 517 6.472686 ACTCCAAGTAGATGATTGTACTCC 57.527 41.667 0.00 0.00 31.09 3.85
517 518 6.198639 ACTCCAAGTAGATGATTGTACTCCT 58.801 40.000 0.00 0.00 31.09 3.69
518 519 7.355101 ACTCCAAGTAGATGATTGTACTCCTA 58.645 38.462 0.00 0.00 31.09 2.94
519 520 8.007742 ACTCCAAGTAGATGATTGTACTCCTAT 58.992 37.037 0.00 0.00 31.09 2.57
520 521 9.521841 CTCCAAGTAGATGATTGTACTCCTATA 57.478 37.037 0.00 0.00 31.09 1.31
530 531 9.674705 ATGATTGTACTCCTATATATATGCCCA 57.325 33.333 5.44 0.00 0.00 5.36
531 532 8.924303 TGATTGTACTCCTATATATATGCCCAC 58.076 37.037 5.44 0.00 0.00 4.61
532 533 6.954487 TGTACTCCTATATATATGCCCACG 57.046 41.667 5.44 0.00 0.00 4.94
533 534 6.665695 TGTACTCCTATATATATGCCCACGA 58.334 40.000 5.44 0.00 0.00 4.35
534 535 6.771267 TGTACTCCTATATATATGCCCACGAG 59.229 42.308 5.44 4.01 0.00 4.18
535 536 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
544 545 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
545 546 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
546 547 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
547 548 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
548 549 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
549 550 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
550 551 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
551 552 1.061131 CGAGGCTCAAGCAATACAACG 59.939 52.381 15.95 0.00 44.36 4.10
552 553 2.346803 GAGGCTCAAGCAATACAACGA 58.653 47.619 10.25 0.00 44.36 3.85
553 554 2.742053 GAGGCTCAAGCAATACAACGAA 59.258 45.455 10.25 0.00 44.36 3.85
554 555 2.484264 AGGCTCAAGCAATACAACGAAC 59.516 45.455 4.13 0.00 44.36 3.95
555 556 2.484264 GGCTCAAGCAATACAACGAACT 59.516 45.455 4.13 0.00 44.36 3.01
556 557 3.682858 GGCTCAAGCAATACAACGAACTA 59.317 43.478 4.13 0.00 44.36 2.24
557 558 4.332819 GGCTCAAGCAATACAACGAACTAT 59.667 41.667 4.13 0.00 44.36 2.12
558 559 5.163754 GGCTCAAGCAATACAACGAACTATT 60.164 40.000 4.13 0.00 44.36 1.73
559 560 5.960105 GCTCAAGCAATACAACGAACTATTC 59.040 40.000 0.00 0.00 41.59 1.75
560 561 6.417191 TCAAGCAATACAACGAACTATTCC 57.583 37.500 0.00 0.00 0.00 3.01
561 562 5.935206 TCAAGCAATACAACGAACTATTCCA 59.065 36.000 0.00 0.00 0.00 3.53
562 563 5.796350 AGCAATACAACGAACTATTCCAC 57.204 39.130 0.00 0.00 0.00 4.02
563 564 4.634443 AGCAATACAACGAACTATTCCACC 59.366 41.667 0.00 0.00 0.00 4.61
564 565 4.393680 GCAATACAACGAACTATTCCACCA 59.606 41.667 0.00 0.00 0.00 4.17
565 566 5.106475 GCAATACAACGAACTATTCCACCAA 60.106 40.000 0.00 0.00 0.00 3.67
566 567 6.404293 GCAATACAACGAACTATTCCACCAAT 60.404 38.462 0.00 0.00 0.00 3.16
567 568 6.920569 ATACAACGAACTATTCCACCAATC 57.079 37.500 0.00 0.00 0.00 2.67
568 569 4.007659 ACAACGAACTATTCCACCAATCC 58.992 43.478 0.00 0.00 0.00 3.01
569 570 3.277142 ACGAACTATTCCACCAATCCC 57.723 47.619 0.00 0.00 0.00 3.85
570 571 2.844348 ACGAACTATTCCACCAATCCCT 59.156 45.455 0.00 0.00 0.00 4.20
571 572 3.118371 ACGAACTATTCCACCAATCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
572 573 3.134804 CGAACTATTCCACCAATCCCTCT 59.865 47.826 0.00 0.00 0.00 3.69
573 574 4.344102 CGAACTATTCCACCAATCCCTCTA 59.656 45.833 0.00 0.00 0.00 2.43
574 575 5.012148 CGAACTATTCCACCAATCCCTCTAT 59.988 44.000 0.00 0.00 0.00 1.98
575 576 6.441088 AACTATTCCACCAATCCCTCTATC 57.559 41.667 0.00 0.00 0.00 2.08
576 577 4.846940 ACTATTCCACCAATCCCTCTATCC 59.153 45.833 0.00 0.00 0.00 2.59
577 578 2.118403 TCCACCAATCCCTCTATCCC 57.882 55.000 0.00 0.00 0.00 3.85
578 579 1.585592 TCCACCAATCCCTCTATCCCT 59.414 52.381 0.00 0.00 0.00 4.20
579 580 2.021042 TCCACCAATCCCTCTATCCCTT 60.021 50.000 0.00 0.00 0.00 3.95
580 581 2.373502 CCACCAATCCCTCTATCCCTTC 59.626 54.545 0.00 0.00 0.00 3.46
581 582 3.321950 CACCAATCCCTCTATCCCTTCT 58.678 50.000 0.00 0.00 0.00 2.85
582 583 4.493618 CACCAATCCCTCTATCCCTTCTA 58.506 47.826 0.00 0.00 0.00 2.10
583 584 4.907875 CACCAATCCCTCTATCCCTTCTAA 59.092 45.833 0.00 0.00 0.00 2.10
584 585 4.908481 ACCAATCCCTCTATCCCTTCTAAC 59.092 45.833 0.00 0.00 0.00 2.34
585 586 4.907875 CCAATCCCTCTATCCCTTCTAACA 59.092 45.833 0.00 0.00 0.00 2.41
586 587 5.012561 CCAATCCCTCTATCCCTTCTAACAG 59.987 48.000 0.00 0.00 0.00 3.16
587 588 3.577919 TCCCTCTATCCCTTCTAACAGC 58.422 50.000 0.00 0.00 0.00 4.40
588 589 3.052109 TCCCTCTATCCCTTCTAACAGCA 60.052 47.826 0.00 0.00 0.00 4.41
589 590 3.070302 CCCTCTATCCCTTCTAACAGCAC 59.930 52.174 0.00 0.00 0.00 4.40
590 591 3.706594 CCTCTATCCCTTCTAACAGCACA 59.293 47.826 0.00 0.00 0.00 4.57
591 592 4.346418 CCTCTATCCCTTCTAACAGCACAT 59.654 45.833 0.00 0.00 0.00 3.21
592 593 5.163258 CCTCTATCCCTTCTAACAGCACATT 60.163 44.000 0.00 0.00 0.00 2.71
593 594 5.918608 TCTATCCCTTCTAACAGCACATTC 58.081 41.667 0.00 0.00 0.00 2.67
594 595 4.851639 ATCCCTTCTAACAGCACATTCT 57.148 40.909 0.00 0.00 0.00 2.40
595 596 3.942829 TCCCTTCTAACAGCACATTCTG 58.057 45.455 0.00 0.00 39.86 3.02
596 597 3.582647 TCCCTTCTAACAGCACATTCTGA 59.417 43.478 0.00 0.00 37.51 3.27
597 598 4.225942 TCCCTTCTAACAGCACATTCTGAT 59.774 41.667 0.00 0.00 37.51 2.90
598 599 4.334759 CCCTTCTAACAGCACATTCTGATG 59.665 45.833 0.00 0.00 42.42 3.07
599 600 4.201891 CCTTCTAACAGCACATTCTGATGC 60.202 45.833 0.00 0.00 40.18 3.91
600 601 3.941573 TCTAACAGCACATTCTGATGCA 58.058 40.909 4.72 0.00 44.59 3.96
601 602 4.325972 TCTAACAGCACATTCTGATGCAA 58.674 39.130 4.72 0.00 44.59 4.08
602 603 3.570926 AACAGCACATTCTGATGCAAG 57.429 42.857 4.72 0.00 44.59 4.01
603 604 2.511659 ACAGCACATTCTGATGCAAGT 58.488 42.857 4.72 0.55 44.59 3.16
604 605 2.889045 ACAGCACATTCTGATGCAAGTT 59.111 40.909 4.72 0.00 44.59 2.66
605 606 4.074259 ACAGCACATTCTGATGCAAGTTA 58.926 39.130 4.72 0.00 44.59 2.24
606 607 4.520111 ACAGCACATTCTGATGCAAGTTAA 59.480 37.500 4.72 0.00 44.59 2.01
607 608 5.093457 CAGCACATTCTGATGCAAGTTAAG 58.907 41.667 4.72 0.00 44.59 1.85
608 609 5.005740 AGCACATTCTGATGCAAGTTAAGA 58.994 37.500 4.72 0.00 44.59 2.10
609 610 5.651139 AGCACATTCTGATGCAAGTTAAGAT 59.349 36.000 4.72 0.00 44.59 2.40
610 611 6.825213 AGCACATTCTGATGCAAGTTAAGATA 59.175 34.615 4.72 0.00 44.59 1.98
611 612 7.501559 AGCACATTCTGATGCAAGTTAAGATAT 59.498 33.333 4.72 0.00 44.59 1.63
612 613 8.133627 GCACATTCTGATGCAAGTTAAGATATT 58.866 33.333 0.00 0.00 41.65 1.28
613 614 9.661187 CACATTCTGATGCAAGTTAAGATATTC 57.339 33.333 0.00 0.00 36.72 1.75
614 615 8.844244 ACATTCTGATGCAAGTTAAGATATTCC 58.156 33.333 0.00 0.00 36.72 3.01
615 616 8.843262 CATTCTGATGCAAGTTAAGATATTCCA 58.157 33.333 0.00 0.00 0.00 3.53
616 617 8.442632 TTCTGATGCAAGTTAAGATATTCCAG 57.557 34.615 0.00 0.00 0.00 3.86
617 618 7.568349 TCTGATGCAAGTTAAGATATTCCAGT 58.432 34.615 0.00 0.00 0.00 4.00
618 619 7.496920 TCTGATGCAAGTTAAGATATTCCAGTG 59.503 37.037 0.00 0.00 0.00 3.66
619 620 6.543465 TGATGCAAGTTAAGATATTCCAGTGG 59.457 38.462 1.40 1.40 0.00 4.00
620 621 4.640201 TGCAAGTTAAGATATTCCAGTGGC 59.360 41.667 3.51 0.00 0.00 5.01
621 622 4.884164 GCAAGTTAAGATATTCCAGTGGCT 59.116 41.667 3.51 0.00 0.00 4.75
622 623 5.220931 GCAAGTTAAGATATTCCAGTGGCTG 60.221 44.000 3.51 0.00 0.00 4.85
623 624 5.957771 AGTTAAGATATTCCAGTGGCTGA 57.042 39.130 3.51 0.00 32.44 4.26
624 625 6.506538 AGTTAAGATATTCCAGTGGCTGAT 57.493 37.500 3.51 0.98 32.44 2.90
625 626 6.294473 AGTTAAGATATTCCAGTGGCTGATG 58.706 40.000 3.51 0.00 32.44 3.07
626 627 6.100279 AGTTAAGATATTCCAGTGGCTGATGA 59.900 38.462 3.51 0.00 32.44 2.92
627 628 5.579753 AAGATATTCCAGTGGCTGATGAT 57.420 39.130 3.51 0.00 32.44 2.45
628 629 4.907809 AGATATTCCAGTGGCTGATGATG 58.092 43.478 3.51 0.00 32.44 3.07
629 630 4.350225 AGATATTCCAGTGGCTGATGATGT 59.650 41.667 3.51 0.00 32.44 3.06
630 631 5.545335 AGATATTCCAGTGGCTGATGATGTA 59.455 40.000 3.51 0.00 32.44 2.29
631 632 2.988010 TCCAGTGGCTGATGATGTAC 57.012 50.000 3.51 0.00 32.44 2.90
632 633 1.136891 TCCAGTGGCTGATGATGTACG 59.863 52.381 3.51 0.00 32.44 3.67
633 634 1.134699 CCAGTGGCTGATGATGTACGT 60.135 52.381 0.00 0.00 32.44 3.57
634 635 2.621338 CAGTGGCTGATGATGTACGTT 58.379 47.619 0.00 0.00 32.44 3.99
635 636 2.349580 CAGTGGCTGATGATGTACGTTG 59.650 50.000 0.00 0.00 32.44 4.10
636 637 2.028112 AGTGGCTGATGATGTACGTTGT 60.028 45.455 0.00 0.00 0.00 3.32
637 638 2.742053 GTGGCTGATGATGTACGTTGTT 59.258 45.455 0.00 0.00 0.00 2.83
638 639 2.741517 TGGCTGATGATGTACGTTGTTG 59.258 45.455 0.00 0.00 0.00 3.33
639 640 3.000041 GGCTGATGATGTACGTTGTTGA 59.000 45.455 0.00 0.00 0.00 3.18
640 641 3.062639 GGCTGATGATGTACGTTGTTGAG 59.937 47.826 0.00 0.00 0.00 3.02
641 642 3.062639 GCTGATGATGTACGTTGTTGAGG 59.937 47.826 0.00 0.00 0.00 3.86
642 643 4.245660 CTGATGATGTACGTTGTTGAGGT 58.754 43.478 0.00 0.00 0.00 3.85
643 644 3.993736 TGATGATGTACGTTGTTGAGGTG 59.006 43.478 0.00 0.00 0.00 4.00
644 645 3.462483 TGATGTACGTTGTTGAGGTGT 57.538 42.857 0.00 0.00 0.00 4.16
645 646 4.587584 TGATGTACGTTGTTGAGGTGTA 57.412 40.909 0.00 0.00 0.00 2.90
646 647 4.300803 TGATGTACGTTGTTGAGGTGTAC 58.699 43.478 0.00 0.00 36.74 2.90
647 648 2.730069 TGTACGTTGTTGAGGTGTACG 58.270 47.619 0.00 0.00 38.53 3.67
648 649 2.053627 GTACGTTGTTGAGGTGTACGG 58.946 52.381 0.00 0.00 36.60 4.02
649 650 0.461135 ACGTTGTTGAGGTGTACGGT 59.539 50.000 0.00 0.00 36.60 4.83
650 651 1.134729 ACGTTGTTGAGGTGTACGGTT 60.135 47.619 0.00 0.00 36.60 4.44
651 652 1.259507 CGTTGTTGAGGTGTACGGTTG 59.740 52.381 0.00 0.00 0.00 3.77
652 653 1.003223 GTTGTTGAGGTGTACGGTTGC 60.003 52.381 0.00 0.00 0.00 4.17
653 654 0.466543 TGTTGAGGTGTACGGTTGCT 59.533 50.000 0.00 0.00 0.00 3.91
654 655 1.145803 GTTGAGGTGTACGGTTGCTC 58.854 55.000 0.00 0.00 0.00 4.26
655 656 1.045407 TTGAGGTGTACGGTTGCTCT 58.955 50.000 0.00 0.00 0.00 4.09
656 657 0.317160 TGAGGTGTACGGTTGCTCTG 59.683 55.000 0.00 0.00 0.00 3.35
657 658 0.601558 GAGGTGTACGGTTGCTCTGA 59.398 55.000 0.00 0.00 0.00 3.27
658 659 1.000506 GAGGTGTACGGTTGCTCTGAA 59.999 52.381 0.00 0.00 0.00 3.02
659 660 1.623811 AGGTGTACGGTTGCTCTGAAT 59.376 47.619 0.00 0.00 0.00 2.57
660 661 2.038557 AGGTGTACGGTTGCTCTGAATT 59.961 45.455 0.00 0.00 0.00 2.17
661 662 2.415512 GGTGTACGGTTGCTCTGAATTC 59.584 50.000 0.00 0.00 0.00 2.17
662 663 3.326747 GTGTACGGTTGCTCTGAATTCT 58.673 45.455 7.05 0.00 0.00 2.40
663 664 3.746492 GTGTACGGTTGCTCTGAATTCTT 59.254 43.478 7.05 0.00 0.00 2.52
664 665 4.213482 GTGTACGGTTGCTCTGAATTCTTT 59.787 41.667 7.05 0.00 0.00 2.52
665 666 4.451096 TGTACGGTTGCTCTGAATTCTTTC 59.549 41.667 7.05 0.00 0.00 2.62
666 667 3.744660 ACGGTTGCTCTGAATTCTTTCT 58.255 40.909 7.05 0.00 32.78 2.52
667 668 4.894784 ACGGTTGCTCTGAATTCTTTCTA 58.105 39.130 7.05 0.00 32.78 2.10
668 669 4.932200 ACGGTTGCTCTGAATTCTTTCTAG 59.068 41.667 7.05 0.00 32.78 2.43
669 670 4.932200 CGGTTGCTCTGAATTCTTTCTAGT 59.068 41.667 7.05 0.00 32.78 2.57
670 671 5.062809 CGGTTGCTCTGAATTCTTTCTAGTC 59.937 44.000 7.05 0.00 32.78 2.59
671 672 5.062809 GGTTGCTCTGAATTCTTTCTAGTCG 59.937 44.000 7.05 0.00 32.78 4.18
672 673 5.644977 TGCTCTGAATTCTTTCTAGTCGA 57.355 39.130 7.05 0.00 32.78 4.20
673 674 5.403246 TGCTCTGAATTCTTTCTAGTCGAC 58.597 41.667 7.70 7.70 32.78 4.20
674 675 5.184096 TGCTCTGAATTCTTTCTAGTCGACT 59.816 40.000 23.66 23.66 32.78 4.18
675 676 6.096695 GCTCTGAATTCTTTCTAGTCGACTT 58.903 40.000 25.44 8.09 32.78 3.01
676 677 6.588373 GCTCTGAATTCTTTCTAGTCGACTTT 59.412 38.462 25.44 9.10 32.78 2.66
677 678 7.117092 GCTCTGAATTCTTTCTAGTCGACTTTT 59.883 37.037 25.44 1.49 32.78 2.27
678 679 8.522178 TCTGAATTCTTTCTAGTCGACTTTTC 57.478 34.615 25.44 13.33 32.78 2.29
679 680 7.599245 TCTGAATTCTTTCTAGTCGACTTTTCC 59.401 37.037 25.44 0.00 32.78 3.13
680 681 6.649557 TGAATTCTTTCTAGTCGACTTTTCCC 59.350 38.462 25.44 4.00 32.78 3.97
681 682 5.540400 TTCTTTCTAGTCGACTTTTCCCA 57.460 39.130 25.44 2.97 0.00 4.37
682 683 5.135508 TCTTTCTAGTCGACTTTTCCCAG 57.864 43.478 25.44 13.84 0.00 4.45
683 684 3.314541 TTCTAGTCGACTTTTCCCAGC 57.685 47.619 25.44 0.00 0.00 4.85
684 685 2.244695 TCTAGTCGACTTTTCCCAGCA 58.755 47.619 25.44 0.47 0.00 4.41
685 686 2.832129 TCTAGTCGACTTTTCCCAGCAT 59.168 45.455 25.44 0.00 0.00 3.79
686 687 4.021229 TCTAGTCGACTTTTCCCAGCATA 58.979 43.478 25.44 0.00 0.00 3.14
687 688 2.973945 AGTCGACTTTTCCCAGCATAC 58.026 47.619 13.58 0.00 0.00 2.39
688 689 2.301870 AGTCGACTTTTCCCAGCATACA 59.698 45.455 13.58 0.00 0.00 2.29
689 690 3.071479 GTCGACTTTTCCCAGCATACAA 58.929 45.455 8.70 0.00 0.00 2.41
690 691 3.500680 GTCGACTTTTCCCAGCATACAAA 59.499 43.478 8.70 0.00 0.00 2.83
691 692 4.023536 GTCGACTTTTCCCAGCATACAAAA 60.024 41.667 8.70 0.00 0.00 2.44
692 693 4.764823 TCGACTTTTCCCAGCATACAAAAT 59.235 37.500 0.00 0.00 0.00 1.82
693 694 5.242838 TCGACTTTTCCCAGCATACAAAATT 59.757 36.000 0.00 0.00 0.00 1.82
694 695 6.431543 TCGACTTTTCCCAGCATACAAAATTA 59.568 34.615 0.00 0.00 0.00 1.40
695 696 7.040340 TCGACTTTTCCCAGCATACAAAATTAA 60.040 33.333 0.00 0.00 0.00 1.40
696 697 7.596995 CGACTTTTCCCAGCATACAAAATTAAA 59.403 33.333 0.00 0.00 0.00 1.52
697 698 9.267084 GACTTTTCCCAGCATACAAAATTAAAA 57.733 29.630 0.00 0.00 0.00 1.52
698 699 9.620259 ACTTTTCCCAGCATACAAAATTAAAAA 57.380 25.926 0.00 0.00 0.00 1.94
716 717 2.234300 AAAACCGACACGATGACACT 57.766 45.000 0.00 0.00 0.00 3.55
717 718 3.374220 AAAACCGACACGATGACACTA 57.626 42.857 0.00 0.00 0.00 2.74
718 719 3.374220 AAACCGACACGATGACACTAA 57.626 42.857 0.00 0.00 0.00 2.24
719 720 2.342910 ACCGACACGATGACACTAAC 57.657 50.000 0.00 0.00 0.00 2.34
731 732 2.067013 GACACTAACGGCCTCTGTTTC 58.933 52.381 0.00 0.00 0.00 2.78
748 749 0.106419 TTCCGTTGCTTTGGGGAAGT 60.106 50.000 0.00 0.00 37.69 3.01
761 762 1.079405 GGAAGTCCATCGCCGTCAA 60.079 57.895 0.00 0.00 35.64 3.18
786 787 1.302832 ACCAAGGAGCCTCTTTGCG 60.303 57.895 10.85 7.16 32.81 4.85
794 795 2.357517 CCTCTTTGCGTCCGCTGT 60.358 61.111 13.31 0.00 42.51 4.40
810 811 3.792736 GTGGGCTATCGGGGCACA 61.793 66.667 0.00 0.00 41.10 4.57
812 813 2.281761 GGGCTATCGGGGCACATG 60.282 66.667 0.00 0.00 32.68 3.21
899 900 3.403558 GCCTCCAGGGACAGGACC 61.404 72.222 0.00 0.00 39.81 4.46
901 902 3.077556 CTCCAGGGACAGGACCGG 61.078 72.222 0.00 0.00 39.81 5.28
903 904 2.606519 CCAGGGACAGGACCGGAA 60.607 66.667 9.46 0.00 37.04 4.30
904 905 1.995626 CCAGGGACAGGACCGGAAT 60.996 63.158 9.46 0.00 37.04 3.01
1007 1008 1.382146 GTCCCCCTCCCATGTCGTA 60.382 63.158 0.00 0.00 0.00 3.43
1011 1012 0.397254 CCCCTCCCATGTCGTACTCT 60.397 60.000 0.00 0.00 0.00 3.24
1013 1014 1.409427 CCCTCCCATGTCGTACTCTTC 59.591 57.143 0.00 0.00 0.00 2.87
1026 1027 2.922503 TCTTCTCCGGTGGCTGCA 60.923 61.111 0.00 0.00 0.00 4.41
1062 1063 4.814294 ATCGTTCAGCGGTCGGCC 62.814 66.667 0.00 0.00 45.17 6.13
1086 1087 1.521681 GGAGGATTTGGAGCGTCGG 60.522 63.158 0.00 0.00 0.00 4.79
1296 1297 3.384348 GTCCTTCACCAGGGCGTA 58.616 61.111 0.00 0.00 44.12 4.42
1325 1326 2.141122 ATCAAACCTTGGTTGCGCCG 62.141 55.000 4.18 0.00 41.21 6.46
1410 1411 1.548719 CATACGTGGACCAAGGAGACA 59.451 52.381 12.30 0.00 0.00 3.41
1455 1456 1.893062 CCTGATCGACAGTCTGGCA 59.107 57.895 6.49 0.00 44.40 4.92
1500 1501 2.042297 TCTCTCCCTCTTCAAGCTGAGA 59.958 50.000 0.48 0.00 33.13 3.27
1640 1650 1.396653 CTGATTCACATTGGGAGGCC 58.603 55.000 0.00 0.00 0.00 5.19
1676 1686 1.257743 CCGGATATGTGGAGACGGAT 58.742 55.000 0.00 0.00 43.69 4.18
1711 1721 1.134670 GTGATAGTGGGCAGAGTGGAC 60.135 57.143 0.00 0.00 0.00 4.02
1911 1921 2.745308 CCCCATGACATCGCCAGGA 61.745 63.158 0.00 0.00 0.00 3.86
1913 1923 1.884464 CCATGACATCGCCAGGACG 60.884 63.158 0.00 0.00 0.00 4.79
1944 2288 1.315257 ATCAACAGGTGCCCAATCGC 61.315 55.000 0.00 0.00 0.00 4.58
1989 2333 2.348888 CCCTAACGGTCCGCAGAGT 61.349 63.158 12.28 0.00 0.00 3.24
2028 2372 1.733402 TTTTGGTGGAGCAGGCAACG 61.733 55.000 0.00 0.00 46.39 4.10
2036 2380 0.107945 GAGCAGGCAACGGAGAAGAT 60.108 55.000 0.00 0.00 46.39 2.40
2073 2417 0.749649 AATTGGTCAAAAGTGGCGCA 59.250 45.000 10.83 0.00 0.00 6.09
2220 2564 3.094062 GCTGGATGCTGGCGGTCTA 62.094 63.158 0.00 0.00 38.95 2.59
2247 2591 0.044092 TGGACCAGGAGAGGCCAATA 59.956 55.000 5.01 0.00 40.02 1.90
2254 2598 2.437281 CAGGAGAGGCCAATAGTGACAT 59.563 50.000 5.01 0.00 40.02 3.06
2271 2615 2.084300 ATCCGGGATCCCATTGGCA 61.084 57.895 30.42 13.26 35.37 4.92
2287 2631 3.120105 CACTCGCAGCCTCGGATA 58.880 61.111 0.00 0.00 0.00 2.59
2326 2672 1.747444 AAGTGAGGGGGATCTGTTGT 58.253 50.000 0.00 0.00 0.00 3.32
2327 2673 0.987294 AGTGAGGGGGATCTGTTGTG 59.013 55.000 0.00 0.00 0.00 3.33
2409 2755 0.642710 AGGGTAGGGCTACACAGGAT 59.357 55.000 0.00 0.00 41.77 3.24
2536 2882 2.679716 GCCTGGTCTCATTGGGCT 59.320 61.111 0.00 0.00 39.68 5.19
2574 2921 1.078497 GTGGATCCATGCACGGACA 60.078 57.895 19.62 0.00 39.29 4.02
2616 2969 3.873883 GCACTGATGCGCCTCAGC 61.874 66.667 33.77 22.45 45.37 4.26
2618 2971 3.397439 ACTGATGCGCCTCAGCCT 61.397 61.111 33.77 18.49 45.37 4.58
2654 3013 1.955778 CCTGTGCAGTTGGATGAAACA 59.044 47.619 0.00 0.00 32.21 2.83
2850 3209 2.941025 TTGGGGGAGGCAGGAAGG 60.941 66.667 0.00 0.00 0.00 3.46
2967 3327 1.226603 GTGTTCGACTCGCCGCTAT 60.227 57.895 0.00 0.00 0.00 2.97
2969 3329 0.306840 TGTTCGACTCGCCGCTATAG 59.693 55.000 0.00 0.00 0.00 1.31
3058 3419 1.673033 GGAGACAACGACCATGGTGAG 60.673 57.143 25.52 18.44 0.00 3.51
3079 3440 1.367840 CGTAGGTAGGAGCATGCCC 59.632 63.158 15.66 15.39 0.00 5.36
3101 3466 4.163078 CCTGGTACTGACATGGAGAATCTT 59.837 45.833 0.00 0.00 33.73 2.40
3153 3519 3.636231 TGCTGGAACGTGAGGGGG 61.636 66.667 0.00 0.00 0.00 5.40
3235 3604 5.462398 GCAATCGTTATCGTGGAGTCTAAAT 59.538 40.000 0.00 0.00 38.33 1.40
3269 3638 7.826744 TGTTGACCAGTACATTATCTTGCAATA 59.173 33.333 0.00 0.00 0.00 1.90
3318 3687 1.482954 ACCTACCGGCTTCTAAGACC 58.517 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.885521 GTCGAGTCGGGGTAGCCG 61.886 72.222 13.54 0.51 0.00 5.52
2 3 1.359475 GATGTCGAGTCGGGGTAGC 59.641 63.158 13.54 0.00 0.00 3.58
5 6 2.045634 TCGATGTCGAGTCGGGGT 60.046 61.111 13.54 0.00 44.22 4.95
14 15 1.752501 GAATGCCGTGGTCGATGTCG 61.753 60.000 0.00 0.00 39.71 4.35
15 16 0.460284 AGAATGCCGTGGTCGATGTC 60.460 55.000 0.00 0.00 39.71 3.06
16 17 0.036388 AAGAATGCCGTGGTCGATGT 60.036 50.000 0.00 0.00 39.71 3.06
17 18 0.652592 GAAGAATGCCGTGGTCGATG 59.347 55.000 0.00 0.00 39.71 3.84
18 19 0.806102 CGAAGAATGCCGTGGTCGAT 60.806 55.000 0.00 0.00 39.71 3.59
19 20 1.445410 CGAAGAATGCCGTGGTCGA 60.445 57.895 0.00 0.00 39.71 4.20
20 21 3.081133 CGAAGAATGCCGTGGTCG 58.919 61.111 0.00 0.00 0.00 4.79
21 22 1.369091 ATGCGAAGAATGCCGTGGTC 61.369 55.000 0.00 0.00 0.00 4.02
22 23 1.377202 ATGCGAAGAATGCCGTGGT 60.377 52.632 0.00 0.00 0.00 4.16
23 24 1.063006 CATGCGAAGAATGCCGTGG 59.937 57.895 0.00 0.00 0.00 4.94
24 25 1.063006 CCATGCGAAGAATGCCGTG 59.937 57.895 0.00 0.00 0.00 4.94
25 26 2.764314 GCCATGCGAAGAATGCCGT 61.764 57.895 0.00 0.00 0.00 5.68
26 27 1.159713 TAGCCATGCGAAGAATGCCG 61.160 55.000 0.00 0.00 0.00 5.69
27 28 0.308993 GTAGCCATGCGAAGAATGCC 59.691 55.000 0.00 0.00 0.00 4.40
28 29 0.308993 GGTAGCCATGCGAAGAATGC 59.691 55.000 0.00 0.00 0.00 3.56
29 30 1.869767 GAGGTAGCCATGCGAAGAATG 59.130 52.381 0.00 0.00 0.00 2.67
30 31 1.539065 CGAGGTAGCCATGCGAAGAAT 60.539 52.381 0.00 0.00 0.00 2.40
31 32 0.179111 CGAGGTAGCCATGCGAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
32 33 1.035385 TCGAGGTAGCCATGCGAAGA 61.035 55.000 0.00 0.00 0.00 2.87
33 34 0.872021 GTCGAGGTAGCCATGCGAAG 60.872 60.000 0.00 0.00 32.39 3.79
34 35 1.141019 GTCGAGGTAGCCATGCGAA 59.859 57.895 0.00 0.00 32.39 4.70
35 36 2.782222 GGTCGAGGTAGCCATGCGA 61.782 63.158 0.00 0.00 0.00 5.10
36 37 2.279517 GGTCGAGGTAGCCATGCG 60.280 66.667 0.00 0.00 0.00 4.73
37 38 1.521681 GTGGTCGAGGTAGCCATGC 60.522 63.158 0.00 0.00 34.52 4.06
38 39 1.226974 CGTGGTCGAGGTAGCCATG 60.227 63.158 0.00 0.00 39.71 3.66
39 40 2.423898 CCGTGGTCGAGGTAGCCAT 61.424 63.158 0.00 0.00 39.71 4.40
40 41 3.066190 CCGTGGTCGAGGTAGCCA 61.066 66.667 0.00 0.00 39.71 4.75
41 42 4.509737 GCCGTGGTCGAGGTAGCC 62.510 72.222 0.00 0.00 39.71 3.93
42 43 3.412879 GAGCCGTGGTCGAGGTAGC 62.413 68.421 0.00 0.00 39.71 3.58
43 44 2.772691 GGAGCCGTGGTCGAGGTAG 61.773 68.421 0.00 0.00 39.71 3.18
44 45 2.753043 GGAGCCGTGGTCGAGGTA 60.753 66.667 0.00 0.00 39.71 3.08
45 46 4.988716 TGGAGCCGTGGTCGAGGT 62.989 66.667 0.00 0.00 39.71 3.85
46 47 4.436998 GTGGAGCCGTGGTCGAGG 62.437 72.222 0.00 0.00 39.71 4.63
47 48 4.436998 GGTGGAGCCGTGGTCGAG 62.437 72.222 0.00 0.00 39.71 4.04
50 51 4.699522 GGTGGTGGAGCCGTGGTC 62.700 72.222 0.00 0.00 41.21 4.02
58 59 3.302347 GAGAGCGTGGGTGGTGGAG 62.302 68.421 0.00 0.00 0.00 3.86
59 60 3.311110 GAGAGCGTGGGTGGTGGA 61.311 66.667 0.00 0.00 0.00 4.02
60 61 4.742201 CGAGAGCGTGGGTGGTGG 62.742 72.222 0.00 0.00 0.00 4.61
61 62 4.742201 CCGAGAGCGTGGGTGGTG 62.742 72.222 0.00 0.00 35.23 4.17
71 72 0.100682 TTGTCGATGTAGCCGAGAGC 59.899 55.000 0.00 0.00 44.25 4.09
72 73 2.561733 TTTGTCGATGTAGCCGAGAG 57.438 50.000 0.00 0.00 36.66 3.20
73 74 2.481276 CCATTTGTCGATGTAGCCGAGA 60.481 50.000 0.00 0.00 36.66 4.04
74 75 1.860950 CCATTTGTCGATGTAGCCGAG 59.139 52.381 0.00 0.00 36.66 4.63
75 76 1.934589 CCATTTGTCGATGTAGCCGA 58.065 50.000 0.00 0.00 0.00 5.54
76 77 0.304705 GCCATTTGTCGATGTAGCCG 59.695 55.000 0.00 0.00 0.00 5.52
77 78 1.064060 GTGCCATTTGTCGATGTAGCC 59.936 52.381 0.00 0.00 0.00 3.93
78 79 1.737236 TGTGCCATTTGTCGATGTAGC 59.263 47.619 0.00 0.00 0.00 3.58
79 80 4.406069 CTTTGTGCCATTTGTCGATGTAG 58.594 43.478 0.00 0.00 0.00 2.74
80 81 3.190327 CCTTTGTGCCATTTGTCGATGTA 59.810 43.478 0.00 0.00 0.00 2.29
81 82 2.030007 CCTTTGTGCCATTTGTCGATGT 60.030 45.455 0.00 0.00 0.00 3.06
82 83 2.598589 CCTTTGTGCCATTTGTCGATG 58.401 47.619 0.00 0.00 0.00 3.84
83 84 1.545582 CCCTTTGTGCCATTTGTCGAT 59.454 47.619 0.00 0.00 0.00 3.59
84 85 0.958091 CCCTTTGTGCCATTTGTCGA 59.042 50.000 0.00 0.00 0.00 4.20
85 86 0.667184 GCCCTTTGTGCCATTTGTCG 60.667 55.000 0.00 0.00 0.00 4.35
86 87 0.681175 AGCCCTTTGTGCCATTTGTC 59.319 50.000 0.00 0.00 0.00 3.18
87 88 1.618343 GTAGCCCTTTGTGCCATTTGT 59.382 47.619 0.00 0.00 0.00 2.83
88 89 1.066929 GGTAGCCCTTTGTGCCATTTG 60.067 52.381 0.00 0.00 0.00 2.32
89 90 1.266178 GGTAGCCCTTTGTGCCATTT 58.734 50.000 0.00 0.00 0.00 2.32
90 91 0.965363 CGGTAGCCCTTTGTGCCATT 60.965 55.000 0.00 0.00 0.00 3.16
91 92 1.378514 CGGTAGCCCTTTGTGCCAT 60.379 57.895 0.00 0.00 0.00 4.40
92 93 2.033448 CGGTAGCCCTTTGTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
93 94 3.440415 GCGGTAGCCCTTTGTGCC 61.440 66.667 0.00 0.00 37.42 5.01
103 104 2.754995 GCTCAAGCAAGGCGGTAGC 61.755 63.158 0.00 0.00 41.59 3.58
104 105 3.490890 GCTCAAGCAAGGCGGTAG 58.509 61.111 0.00 0.00 41.59 3.18
114 115 2.383527 CCGACGAGGTTGCTCAAGC 61.384 63.158 0.00 3.81 38.96 4.01
115 116 3.862124 CCGACGAGGTTGCTCAAG 58.138 61.111 0.00 0.00 34.51 3.02
372 373 3.445450 TGAGACTGGAGAAGAATCCGAAG 59.555 47.826 0.00 0.00 42.77 3.79
373 374 3.193691 GTGAGACTGGAGAAGAATCCGAA 59.806 47.826 0.00 0.00 42.77 4.30
374 375 2.755655 GTGAGACTGGAGAAGAATCCGA 59.244 50.000 0.00 0.00 42.77 4.55
375 376 2.159170 GGTGAGACTGGAGAAGAATCCG 60.159 54.545 0.00 0.00 42.77 4.18
376 377 2.159170 CGGTGAGACTGGAGAAGAATCC 60.159 54.545 0.00 0.00 40.03 3.01
377 378 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
378 379 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
379 380 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
380 381 1.074084 AGACGGTGAGACTGGAGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
381 382 1.201181 CAGACGGTGAGACTGGAGAAG 59.799 57.143 0.00 0.00 38.63 2.85
382 383 1.248486 CAGACGGTGAGACTGGAGAA 58.752 55.000 0.00 0.00 38.63 2.87
383 384 1.244697 GCAGACGGTGAGACTGGAGA 61.245 60.000 0.00 0.00 41.73 3.71
384 385 1.214062 GCAGACGGTGAGACTGGAG 59.786 63.158 0.00 0.00 41.73 3.86
385 386 2.626780 CGCAGACGGTGAGACTGGA 61.627 63.158 0.00 0.00 41.73 3.86
386 387 2.126307 CGCAGACGGTGAGACTGG 60.126 66.667 0.00 0.00 41.73 4.00
387 388 1.442857 GACGCAGACGGTGAGACTG 60.443 63.158 0.00 0.00 46.04 3.51
388 389 2.955402 GACGCAGACGGTGAGACT 59.045 61.111 0.00 0.00 46.04 3.24
389 390 2.502080 CGACGCAGACGGTGAGAC 60.502 66.667 0.00 0.00 46.04 3.36
390 391 4.400109 GCGACGCAGACGGTGAGA 62.400 66.667 16.42 0.00 46.96 3.27
397 398 2.126580 AACGGTAGCGACGCAGAC 60.127 61.111 23.70 18.49 34.00 3.51
398 399 2.126618 CAACGGTAGCGACGCAGA 60.127 61.111 23.70 6.47 34.00 4.26
399 400 2.430244 ACAACGGTAGCGACGCAG 60.430 61.111 23.70 12.40 34.00 5.18
400 401 2.731721 CACAACGGTAGCGACGCA 60.732 61.111 23.70 5.17 34.00 5.24
401 402 2.429571 TCACAACGGTAGCGACGC 60.430 61.111 22.88 13.03 34.00 5.19
402 403 1.081641 AGTCACAACGGTAGCGACG 60.082 57.895 22.88 13.36 37.36 5.12
403 404 1.615107 GCAGTCACAACGGTAGCGAC 61.615 60.000 22.88 8.20 0.00 5.19
404 405 1.372499 GCAGTCACAACGGTAGCGA 60.372 57.895 22.88 0.00 0.00 4.93
405 406 1.617755 CTGCAGTCACAACGGTAGCG 61.618 60.000 13.69 13.69 0.00 4.26
406 407 1.291877 CCTGCAGTCACAACGGTAGC 61.292 60.000 13.81 0.00 33.24 3.58
407 408 0.670546 CCCTGCAGTCACAACGGTAG 60.671 60.000 13.81 0.00 34.10 3.18
408 409 1.369692 CCCTGCAGTCACAACGGTA 59.630 57.895 13.81 0.00 0.00 4.02
409 410 2.111043 CCCTGCAGTCACAACGGT 59.889 61.111 13.81 0.00 0.00 4.83
410 411 2.669569 CCCCTGCAGTCACAACGG 60.670 66.667 13.81 4.38 0.00 4.44
411 412 2.469465 ATCCCCCTGCAGTCACAACG 62.469 60.000 13.81 0.00 0.00 4.10
412 413 0.962356 CATCCCCCTGCAGTCACAAC 60.962 60.000 13.81 0.00 0.00 3.32
413 414 1.379916 CATCCCCCTGCAGTCACAA 59.620 57.895 13.81 0.00 0.00 3.33
414 415 1.426251 AACATCCCCCTGCAGTCACA 61.426 55.000 13.81 0.00 0.00 3.58
415 416 0.962356 CAACATCCCCCTGCAGTCAC 60.962 60.000 13.81 0.00 0.00 3.67
416 417 1.133181 TCAACATCCCCCTGCAGTCA 61.133 55.000 13.81 0.00 0.00 3.41
417 418 0.393537 CTCAACATCCCCCTGCAGTC 60.394 60.000 13.81 0.00 0.00 3.51
418 419 1.136329 ACTCAACATCCCCCTGCAGT 61.136 55.000 13.81 0.00 0.00 4.40
419 420 0.911769 TACTCAACATCCCCCTGCAG 59.088 55.000 6.78 6.78 0.00 4.41
420 421 1.595311 ATACTCAACATCCCCCTGCA 58.405 50.000 0.00 0.00 0.00 4.41
421 422 3.857157 TTATACTCAACATCCCCCTGC 57.143 47.619 0.00 0.00 0.00 4.85
422 423 5.310409 ACATTATACTCAACATCCCCCTG 57.690 43.478 0.00 0.00 0.00 4.45
423 424 5.994416 AACATTATACTCAACATCCCCCT 57.006 39.130 0.00 0.00 0.00 4.79
424 425 8.706322 AATAAACATTATACTCAACATCCCCC 57.294 34.615 0.00 0.00 0.00 5.40
441 442 9.968870 GTCTATCTCGTCTTTCCTAATAAACAT 57.031 33.333 0.00 0.00 0.00 2.71
442 443 9.186837 AGTCTATCTCGTCTTTCCTAATAAACA 57.813 33.333 0.00 0.00 0.00 2.83
445 446 9.504708 CCTAGTCTATCTCGTCTTTCCTAATAA 57.495 37.037 0.00 0.00 0.00 1.40
446 447 8.878211 TCCTAGTCTATCTCGTCTTTCCTAATA 58.122 37.037 0.00 0.00 0.00 0.98
447 448 7.747690 TCCTAGTCTATCTCGTCTTTCCTAAT 58.252 38.462 0.00 0.00 0.00 1.73
448 449 7.134362 TCCTAGTCTATCTCGTCTTTCCTAA 57.866 40.000 0.00 0.00 0.00 2.69
449 450 6.744175 TCCTAGTCTATCTCGTCTTTCCTA 57.256 41.667 0.00 0.00 0.00 2.94
450 451 5.633655 TCCTAGTCTATCTCGTCTTTCCT 57.366 43.478 0.00 0.00 0.00 3.36
451 452 6.887626 AATCCTAGTCTATCTCGTCTTTCC 57.112 41.667 0.00 0.00 0.00 3.13
452 453 7.708998 ACAAATCCTAGTCTATCTCGTCTTTC 58.291 38.462 0.00 0.00 0.00 2.62
453 454 7.648039 ACAAATCCTAGTCTATCTCGTCTTT 57.352 36.000 0.00 0.00 0.00 2.52
454 455 7.558444 AGAACAAATCCTAGTCTATCTCGTCTT 59.442 37.037 0.00 0.00 0.00 3.01
455 456 7.012894 CAGAACAAATCCTAGTCTATCTCGTCT 59.987 40.741 0.00 0.00 0.00 4.18
456 457 7.136119 CAGAACAAATCCTAGTCTATCTCGTC 58.864 42.308 0.00 0.00 0.00 4.20
457 458 6.039941 CCAGAACAAATCCTAGTCTATCTCGT 59.960 42.308 0.00 0.00 0.00 4.18
458 459 6.442952 CCAGAACAAATCCTAGTCTATCTCG 58.557 44.000 0.00 0.00 0.00 4.04
459 460 6.041523 AGCCAGAACAAATCCTAGTCTATCTC 59.958 42.308 0.00 0.00 0.00 2.75
460 461 5.902431 AGCCAGAACAAATCCTAGTCTATCT 59.098 40.000 0.00 0.00 0.00 1.98
461 462 6.168270 AGCCAGAACAAATCCTAGTCTATC 57.832 41.667 0.00 0.00 0.00 2.08
462 463 6.069963 ACAAGCCAGAACAAATCCTAGTCTAT 60.070 38.462 0.00 0.00 0.00 1.98
463 464 5.248477 ACAAGCCAGAACAAATCCTAGTCTA 59.752 40.000 0.00 0.00 0.00 2.59
464 465 4.042187 ACAAGCCAGAACAAATCCTAGTCT 59.958 41.667 0.00 0.00 0.00 3.24
465 466 4.327680 ACAAGCCAGAACAAATCCTAGTC 58.672 43.478 0.00 0.00 0.00 2.59
466 467 4.042187 AGACAAGCCAGAACAAATCCTAGT 59.958 41.667 0.00 0.00 0.00 2.57
467 468 4.583871 AGACAAGCCAGAACAAATCCTAG 58.416 43.478 0.00 0.00 0.00 3.02
468 469 4.640771 AGACAAGCCAGAACAAATCCTA 57.359 40.909 0.00 0.00 0.00 2.94
469 470 3.515602 AGACAAGCCAGAACAAATCCT 57.484 42.857 0.00 0.00 0.00 3.24
470 471 3.319122 ACAAGACAAGCCAGAACAAATCC 59.681 43.478 0.00 0.00 0.00 3.01
471 472 4.574599 ACAAGACAAGCCAGAACAAATC 57.425 40.909 0.00 0.00 0.00 2.17
472 473 5.133221 AGTACAAGACAAGCCAGAACAAAT 58.867 37.500 0.00 0.00 0.00 2.32
473 474 4.523083 AGTACAAGACAAGCCAGAACAAA 58.477 39.130 0.00 0.00 0.00 2.83
474 475 4.127171 GAGTACAAGACAAGCCAGAACAA 58.873 43.478 0.00 0.00 0.00 2.83
475 476 3.494398 GGAGTACAAGACAAGCCAGAACA 60.494 47.826 0.00 0.00 0.00 3.18
476 477 3.067833 GGAGTACAAGACAAGCCAGAAC 58.932 50.000 0.00 0.00 0.00 3.01
477 478 2.703536 TGGAGTACAAGACAAGCCAGAA 59.296 45.455 0.00 0.00 0.00 3.02
478 479 2.325484 TGGAGTACAAGACAAGCCAGA 58.675 47.619 0.00 0.00 0.00 3.86
479 480 2.839486 TGGAGTACAAGACAAGCCAG 57.161 50.000 0.00 0.00 0.00 4.85
489 490 8.362464 AGTACAATCATCTACTTGGAGTACAA 57.638 34.615 0.00 0.00 37.55 2.41
490 491 7.068348 GGAGTACAATCATCTACTTGGAGTACA 59.932 40.741 0.00 0.00 33.62 2.90
491 492 7.285858 AGGAGTACAATCATCTACTTGGAGTAC 59.714 40.741 0.00 0.00 0.00 2.73
492 493 7.355101 AGGAGTACAATCATCTACTTGGAGTA 58.645 38.462 0.00 0.00 0.00 2.59
493 494 6.198639 AGGAGTACAATCATCTACTTGGAGT 58.801 40.000 0.00 0.00 0.00 3.85
494 495 6.723298 AGGAGTACAATCATCTACTTGGAG 57.277 41.667 0.00 0.00 0.00 3.86
504 505 9.674705 TGGGCATATATATAGGAGTACAATCAT 57.325 33.333 8.56 0.00 0.00 2.45
505 506 8.924303 GTGGGCATATATATAGGAGTACAATCA 58.076 37.037 8.56 0.00 0.00 2.57
506 507 8.082852 CGTGGGCATATATATAGGAGTACAATC 58.917 40.741 8.56 0.00 0.00 2.67
507 508 7.783119 TCGTGGGCATATATATAGGAGTACAAT 59.217 37.037 8.56 0.00 0.00 2.71
508 509 7.120716 TCGTGGGCATATATATAGGAGTACAA 58.879 38.462 8.56 0.00 0.00 2.41
509 510 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
510 511 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
511 512 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
512 513 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
513 514 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
527 528 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
528 529 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
529 530 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
530 531 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
531 532 1.061131 CGTTGTATTGCTTGAGCCTCG 59.939 52.381 0.00 0.00 41.18 4.63
532 533 2.346803 TCGTTGTATTGCTTGAGCCTC 58.653 47.619 0.00 0.00 41.18 4.70
533 534 2.472695 TCGTTGTATTGCTTGAGCCT 57.527 45.000 0.00 0.00 41.18 4.58
534 535 2.484264 AGTTCGTTGTATTGCTTGAGCC 59.516 45.455 0.00 0.00 41.18 4.70
535 536 3.813529 AGTTCGTTGTATTGCTTGAGC 57.186 42.857 0.00 0.00 42.50 4.26
536 537 6.092122 TGGAATAGTTCGTTGTATTGCTTGAG 59.908 38.462 0.00 0.00 30.55 3.02
537 538 5.935206 TGGAATAGTTCGTTGTATTGCTTGA 59.065 36.000 0.00 0.00 30.55 3.02
538 539 6.021596 GTGGAATAGTTCGTTGTATTGCTTG 58.978 40.000 0.00 0.00 30.55 4.01
539 540 5.123344 GGTGGAATAGTTCGTTGTATTGCTT 59.877 40.000 0.00 0.00 30.55 3.91
540 541 4.634443 GGTGGAATAGTTCGTTGTATTGCT 59.366 41.667 0.00 0.00 30.55 3.91
541 542 4.393680 TGGTGGAATAGTTCGTTGTATTGC 59.606 41.667 0.00 0.00 0.00 3.56
542 543 6.489127 TTGGTGGAATAGTTCGTTGTATTG 57.511 37.500 0.00 0.00 0.00 1.90
543 544 6.317893 GGATTGGTGGAATAGTTCGTTGTATT 59.682 38.462 0.00 0.00 0.00 1.89
544 545 5.820947 GGATTGGTGGAATAGTTCGTTGTAT 59.179 40.000 0.00 0.00 0.00 2.29
545 546 5.180271 GGATTGGTGGAATAGTTCGTTGTA 58.820 41.667 0.00 0.00 0.00 2.41
546 547 4.007659 GGATTGGTGGAATAGTTCGTTGT 58.992 43.478 0.00 0.00 0.00 3.32
547 548 3.377172 GGGATTGGTGGAATAGTTCGTTG 59.623 47.826 0.00 0.00 0.00 4.10
548 549 3.265995 AGGGATTGGTGGAATAGTTCGTT 59.734 43.478 0.00 0.00 0.00 3.85
549 550 2.844348 AGGGATTGGTGGAATAGTTCGT 59.156 45.455 0.00 0.00 0.00 3.85
550 551 3.134804 AGAGGGATTGGTGGAATAGTTCG 59.865 47.826 0.00 0.00 0.00 3.95
551 552 4.779993 AGAGGGATTGGTGGAATAGTTC 57.220 45.455 0.00 0.00 0.00 3.01
552 553 5.310857 GGATAGAGGGATTGGTGGAATAGTT 59.689 44.000 0.00 0.00 0.00 2.24
553 554 4.846940 GGATAGAGGGATTGGTGGAATAGT 59.153 45.833 0.00 0.00 0.00 2.12
554 555 4.226168 GGGATAGAGGGATTGGTGGAATAG 59.774 50.000 0.00 0.00 0.00 1.73
555 556 4.140204 AGGGATAGAGGGATTGGTGGAATA 60.140 45.833 0.00 0.00 0.00 1.75
556 557 2.989571 GGGATAGAGGGATTGGTGGAAT 59.010 50.000 0.00 0.00 0.00 3.01
557 558 2.021042 AGGGATAGAGGGATTGGTGGAA 60.021 50.000 0.00 0.00 0.00 3.53
558 559 1.585592 AGGGATAGAGGGATTGGTGGA 59.414 52.381 0.00 0.00 0.00 4.02
559 560 2.124560 AGGGATAGAGGGATTGGTGG 57.875 55.000 0.00 0.00 0.00 4.61
560 561 3.321950 AGAAGGGATAGAGGGATTGGTG 58.678 50.000 0.00 0.00 0.00 4.17
561 562 3.734344 AGAAGGGATAGAGGGATTGGT 57.266 47.619 0.00 0.00 0.00 3.67
562 563 4.907875 TGTTAGAAGGGATAGAGGGATTGG 59.092 45.833 0.00 0.00 0.00 3.16
563 564 5.512232 GCTGTTAGAAGGGATAGAGGGATTG 60.512 48.000 0.00 0.00 0.00 2.67
564 565 4.595350 GCTGTTAGAAGGGATAGAGGGATT 59.405 45.833 0.00 0.00 0.00 3.01
565 566 4.164204 GCTGTTAGAAGGGATAGAGGGAT 58.836 47.826 0.00 0.00 0.00 3.85
566 567 3.052109 TGCTGTTAGAAGGGATAGAGGGA 60.052 47.826 0.00 0.00 0.00 4.20
567 568 3.070302 GTGCTGTTAGAAGGGATAGAGGG 59.930 52.174 0.00 0.00 0.00 4.30
568 569 3.706594 TGTGCTGTTAGAAGGGATAGAGG 59.293 47.826 0.00 0.00 0.00 3.69
569 570 5.543507 ATGTGCTGTTAGAAGGGATAGAG 57.456 43.478 0.00 0.00 0.00 2.43
570 571 5.663106 AGAATGTGCTGTTAGAAGGGATAGA 59.337 40.000 0.00 0.00 0.00 1.98
571 572 5.757320 CAGAATGTGCTGTTAGAAGGGATAG 59.243 44.000 0.00 0.00 0.00 2.08
572 573 5.425217 TCAGAATGTGCTGTTAGAAGGGATA 59.575 40.000 0.00 0.00 37.20 2.59
573 574 4.225942 TCAGAATGTGCTGTTAGAAGGGAT 59.774 41.667 0.00 0.00 37.20 3.85
574 575 3.582647 TCAGAATGTGCTGTTAGAAGGGA 59.417 43.478 0.00 0.00 37.20 4.20
575 576 3.942829 TCAGAATGTGCTGTTAGAAGGG 58.057 45.455 0.00 0.00 37.20 3.95
576 577 4.201891 GCATCAGAATGTGCTGTTAGAAGG 60.202 45.833 0.00 0.00 39.12 3.46
577 578 4.393990 TGCATCAGAATGTGCTGTTAGAAG 59.606 41.667 0.00 0.00 41.50 2.85
578 579 4.325972 TGCATCAGAATGTGCTGTTAGAA 58.674 39.130 0.00 0.00 41.50 2.10
579 580 3.941573 TGCATCAGAATGTGCTGTTAGA 58.058 40.909 0.00 0.00 41.50 2.10
580 581 4.155462 ACTTGCATCAGAATGTGCTGTTAG 59.845 41.667 0.00 0.00 41.50 2.34
581 582 4.074259 ACTTGCATCAGAATGTGCTGTTA 58.926 39.130 0.00 0.00 41.50 2.41
582 583 2.889045 ACTTGCATCAGAATGTGCTGTT 59.111 40.909 0.00 0.00 41.50 3.16
583 584 2.511659 ACTTGCATCAGAATGTGCTGT 58.488 42.857 0.00 0.00 41.50 4.40
584 585 3.570926 AACTTGCATCAGAATGTGCTG 57.429 42.857 0.00 0.00 41.50 4.41
585 586 5.005740 TCTTAACTTGCATCAGAATGTGCT 58.994 37.500 0.00 0.00 41.50 4.40
586 587 5.300969 TCTTAACTTGCATCAGAATGTGC 57.699 39.130 0.00 0.00 41.38 4.57
587 588 9.661187 GAATATCTTAACTTGCATCAGAATGTG 57.339 33.333 0.00 0.00 37.40 3.21
588 589 8.844244 GGAATATCTTAACTTGCATCAGAATGT 58.156 33.333 0.00 0.00 37.40 2.71
589 590 8.843262 TGGAATATCTTAACTTGCATCAGAATG 58.157 33.333 0.00 0.00 35.87 2.67
590 591 8.985315 TGGAATATCTTAACTTGCATCAGAAT 57.015 30.769 0.00 0.00 0.00 2.40
591 592 8.049117 ACTGGAATATCTTAACTTGCATCAGAA 58.951 33.333 0.00 0.00 0.00 3.02
592 593 7.496920 CACTGGAATATCTTAACTTGCATCAGA 59.503 37.037 0.00 0.00 0.00 3.27
593 594 7.255035 CCACTGGAATATCTTAACTTGCATCAG 60.255 40.741 0.00 0.00 0.00 2.90
594 595 6.543465 CCACTGGAATATCTTAACTTGCATCA 59.457 38.462 0.00 0.00 0.00 3.07
595 596 6.514048 GCCACTGGAATATCTTAACTTGCATC 60.514 42.308 0.00 0.00 0.00 3.91
596 597 5.300286 GCCACTGGAATATCTTAACTTGCAT 59.700 40.000 0.00 0.00 0.00 3.96
597 598 4.640201 GCCACTGGAATATCTTAACTTGCA 59.360 41.667 0.00 0.00 0.00 4.08
598 599 4.884164 AGCCACTGGAATATCTTAACTTGC 59.116 41.667 0.00 0.00 0.00 4.01
599 600 6.115446 TCAGCCACTGGAATATCTTAACTTG 58.885 40.000 0.00 0.00 31.51 3.16
600 601 6.313519 TCAGCCACTGGAATATCTTAACTT 57.686 37.500 0.00 0.00 31.51 2.66
601 602 5.957771 TCAGCCACTGGAATATCTTAACT 57.042 39.130 0.00 0.00 31.51 2.24
602 603 6.291377 TCATCAGCCACTGGAATATCTTAAC 58.709 40.000 0.00 0.00 31.51 2.01
603 604 6.499106 TCATCAGCCACTGGAATATCTTAA 57.501 37.500 0.00 0.00 31.51 1.85
604 605 6.043590 ACATCATCAGCCACTGGAATATCTTA 59.956 38.462 0.00 0.00 31.51 2.10
605 606 5.163120 ACATCATCAGCCACTGGAATATCTT 60.163 40.000 0.00 0.00 31.51 2.40
606 607 4.350225 ACATCATCAGCCACTGGAATATCT 59.650 41.667 0.00 0.00 31.51 1.98
607 608 4.649692 ACATCATCAGCCACTGGAATATC 58.350 43.478 0.00 0.00 31.51 1.63
608 609 4.719026 ACATCATCAGCCACTGGAATAT 57.281 40.909 0.00 0.00 31.51 1.28
609 610 4.501400 CGTACATCATCAGCCACTGGAATA 60.501 45.833 0.00 0.00 31.51 1.75
610 611 3.742327 CGTACATCATCAGCCACTGGAAT 60.742 47.826 0.00 0.00 31.51 3.01
611 612 2.418609 CGTACATCATCAGCCACTGGAA 60.419 50.000 0.00 0.00 31.51 3.53
612 613 1.136891 CGTACATCATCAGCCACTGGA 59.863 52.381 0.00 0.00 31.51 3.86
613 614 1.134699 ACGTACATCATCAGCCACTGG 60.135 52.381 0.00 0.00 31.51 4.00
614 615 2.299993 ACGTACATCATCAGCCACTG 57.700 50.000 0.00 0.00 0.00 3.66
615 616 2.028112 ACAACGTACATCATCAGCCACT 60.028 45.455 0.00 0.00 0.00 4.00
616 617 2.346803 ACAACGTACATCATCAGCCAC 58.653 47.619 0.00 0.00 0.00 5.01
617 618 2.741517 CAACAACGTACATCATCAGCCA 59.258 45.455 0.00 0.00 0.00 4.75
618 619 3.000041 TCAACAACGTACATCATCAGCC 59.000 45.455 0.00 0.00 0.00 4.85
619 620 3.062639 CCTCAACAACGTACATCATCAGC 59.937 47.826 0.00 0.00 0.00 4.26
620 621 4.091945 CACCTCAACAACGTACATCATCAG 59.908 45.833 0.00 0.00 0.00 2.90
621 622 3.993736 CACCTCAACAACGTACATCATCA 59.006 43.478 0.00 0.00 0.00 3.07
622 623 3.994392 ACACCTCAACAACGTACATCATC 59.006 43.478 0.00 0.00 0.00 2.92
623 624 4.002906 ACACCTCAACAACGTACATCAT 57.997 40.909 0.00 0.00 0.00 2.45
624 625 3.462483 ACACCTCAACAACGTACATCA 57.538 42.857 0.00 0.00 0.00 3.07
625 626 3.362831 CGTACACCTCAACAACGTACATC 59.637 47.826 0.00 0.00 33.61 3.06
626 627 3.311106 CGTACACCTCAACAACGTACAT 58.689 45.455 0.00 0.00 33.61 2.29
627 628 2.543445 CCGTACACCTCAACAACGTACA 60.543 50.000 0.00 0.00 33.61 2.90
628 629 2.053627 CCGTACACCTCAACAACGTAC 58.946 52.381 0.00 0.00 31.87 3.67
629 630 1.680735 ACCGTACACCTCAACAACGTA 59.319 47.619 0.00 0.00 31.87 3.57
630 631 0.461135 ACCGTACACCTCAACAACGT 59.539 50.000 0.00 0.00 31.87 3.99
631 632 1.259507 CAACCGTACACCTCAACAACG 59.740 52.381 0.00 0.00 0.00 4.10
632 633 1.003223 GCAACCGTACACCTCAACAAC 60.003 52.381 0.00 0.00 0.00 3.32
633 634 1.134340 AGCAACCGTACACCTCAACAA 60.134 47.619 0.00 0.00 0.00 2.83
634 635 0.466543 AGCAACCGTACACCTCAACA 59.533 50.000 0.00 0.00 0.00 3.33
635 636 1.145803 GAGCAACCGTACACCTCAAC 58.854 55.000 0.00 0.00 0.00 3.18
636 637 1.045407 AGAGCAACCGTACACCTCAA 58.955 50.000 0.00 0.00 0.00 3.02
637 638 0.317160 CAGAGCAACCGTACACCTCA 59.683 55.000 0.00 0.00 0.00 3.86
638 639 0.601558 TCAGAGCAACCGTACACCTC 59.398 55.000 0.00 0.00 0.00 3.85
639 640 1.045407 TTCAGAGCAACCGTACACCT 58.955 50.000 0.00 0.00 0.00 4.00
640 641 2.094762 ATTCAGAGCAACCGTACACC 57.905 50.000 0.00 0.00 0.00 4.16
641 642 3.326747 AGAATTCAGAGCAACCGTACAC 58.673 45.455 8.44 0.00 0.00 2.90
642 643 3.678056 AGAATTCAGAGCAACCGTACA 57.322 42.857 8.44 0.00 0.00 2.90
643 644 4.691216 AGAAAGAATTCAGAGCAACCGTAC 59.309 41.667 8.44 0.00 38.06 3.67
644 645 4.894784 AGAAAGAATTCAGAGCAACCGTA 58.105 39.130 8.44 0.00 38.06 4.02
645 646 3.744660 AGAAAGAATTCAGAGCAACCGT 58.255 40.909 8.44 0.00 38.06 4.83
646 647 4.932200 ACTAGAAAGAATTCAGAGCAACCG 59.068 41.667 8.44 0.00 38.06 4.44
647 648 5.062809 CGACTAGAAAGAATTCAGAGCAACC 59.937 44.000 8.44 0.00 38.06 3.77
648 649 5.864474 TCGACTAGAAAGAATTCAGAGCAAC 59.136 40.000 8.44 0.00 38.06 4.17
649 650 5.864474 GTCGACTAGAAAGAATTCAGAGCAA 59.136 40.000 8.70 0.00 38.06 3.91
650 651 5.184096 AGTCGACTAGAAAGAATTCAGAGCA 59.816 40.000 18.46 0.00 38.06 4.26
651 652 5.646606 AGTCGACTAGAAAGAATTCAGAGC 58.353 41.667 18.46 0.00 38.06 4.09
652 653 8.527567 AAAAGTCGACTAGAAAGAATTCAGAG 57.472 34.615 20.39 0.00 38.06 3.35
653 654 7.599245 GGAAAAGTCGACTAGAAAGAATTCAGA 59.401 37.037 20.39 0.00 38.06 3.27
654 655 7.148557 GGGAAAAGTCGACTAGAAAGAATTCAG 60.149 40.741 20.39 0.00 38.06 3.02
655 656 6.649557 GGGAAAAGTCGACTAGAAAGAATTCA 59.350 38.462 20.39 0.00 38.06 2.57
656 657 6.649557 TGGGAAAAGTCGACTAGAAAGAATTC 59.350 38.462 20.39 12.15 35.70 2.17
657 658 6.531021 TGGGAAAAGTCGACTAGAAAGAATT 58.469 36.000 20.39 3.56 0.00 2.17
658 659 6.110411 TGGGAAAAGTCGACTAGAAAGAAT 57.890 37.500 20.39 0.00 0.00 2.40
659 660 5.539048 CTGGGAAAAGTCGACTAGAAAGAA 58.461 41.667 20.39 1.61 0.00 2.52
660 661 4.560919 GCTGGGAAAAGTCGACTAGAAAGA 60.561 45.833 20.39 1.29 0.00 2.52
661 662 3.680458 GCTGGGAAAAGTCGACTAGAAAG 59.320 47.826 20.39 12.64 0.00 2.62
662 663 3.070446 TGCTGGGAAAAGTCGACTAGAAA 59.930 43.478 20.39 2.05 0.00 2.52
663 664 2.631062 TGCTGGGAAAAGTCGACTAGAA 59.369 45.455 20.39 2.50 0.00 2.10
664 665 2.244695 TGCTGGGAAAAGTCGACTAGA 58.755 47.619 20.39 0.00 0.00 2.43
665 666 2.743636 TGCTGGGAAAAGTCGACTAG 57.256 50.000 20.39 12.40 0.00 2.57
666 667 3.512329 TGTATGCTGGGAAAAGTCGACTA 59.488 43.478 20.39 0.14 0.00 2.59
667 668 2.301870 TGTATGCTGGGAAAAGTCGACT 59.698 45.455 13.58 13.58 0.00 4.18
668 669 2.695359 TGTATGCTGGGAAAAGTCGAC 58.305 47.619 7.70 7.70 0.00 4.20
669 670 3.410631 TTGTATGCTGGGAAAAGTCGA 57.589 42.857 0.00 0.00 0.00 4.20
670 671 4.497473 TTTTGTATGCTGGGAAAAGTCG 57.503 40.909 0.00 0.00 0.00 4.18
671 672 8.825667 TTTAATTTTGTATGCTGGGAAAAGTC 57.174 30.769 0.00 0.00 0.00 3.01
672 673 9.620259 TTTTTAATTTTGTATGCTGGGAAAAGT 57.380 25.926 0.00 0.00 0.00 2.66
696 697 2.557317 AGTGTCATCGTGTCGGTTTTT 58.443 42.857 0.00 0.00 0.00 1.94
697 698 2.234300 AGTGTCATCGTGTCGGTTTT 57.766 45.000 0.00 0.00 0.00 2.43
698 699 3.054878 GTTAGTGTCATCGTGTCGGTTT 58.945 45.455 0.00 0.00 0.00 3.27
699 700 2.669364 GTTAGTGTCATCGTGTCGGTT 58.331 47.619 0.00 0.00 0.00 4.44
700 701 1.400629 CGTTAGTGTCATCGTGTCGGT 60.401 52.381 0.00 0.00 0.00 4.69
701 702 1.256652 CGTTAGTGTCATCGTGTCGG 58.743 55.000 0.00 0.00 0.00 4.79
702 703 1.256652 CCGTTAGTGTCATCGTGTCG 58.743 55.000 0.00 0.00 0.00 4.35
703 704 0.989890 GCCGTTAGTGTCATCGTGTC 59.010 55.000 0.00 0.00 0.00 3.67
704 705 0.389426 GGCCGTTAGTGTCATCGTGT 60.389 55.000 0.00 0.00 0.00 4.49
705 706 0.108804 AGGCCGTTAGTGTCATCGTG 60.109 55.000 0.00 0.00 0.00 4.35
706 707 0.172803 GAGGCCGTTAGTGTCATCGT 59.827 55.000 0.00 0.00 0.00 3.73
707 708 0.456221 AGAGGCCGTTAGTGTCATCG 59.544 55.000 0.00 0.00 0.00 3.84
708 709 1.204941 ACAGAGGCCGTTAGTGTCATC 59.795 52.381 0.00 0.00 0.00 2.92
709 710 1.267121 ACAGAGGCCGTTAGTGTCAT 58.733 50.000 0.00 0.00 0.00 3.06
710 711 1.045407 AACAGAGGCCGTTAGTGTCA 58.955 50.000 0.00 0.00 0.00 3.58
711 712 2.067013 GAAACAGAGGCCGTTAGTGTC 58.933 52.381 0.00 0.00 0.00 3.67
712 713 1.270678 GGAAACAGAGGCCGTTAGTGT 60.271 52.381 0.00 0.00 0.00 3.55
713 714 1.439679 GGAAACAGAGGCCGTTAGTG 58.560 55.000 0.00 0.00 0.00 2.74
714 715 0.037605 CGGAAACAGAGGCCGTTAGT 60.038 55.000 0.00 0.00 40.17 2.24
715 716 2.750815 CGGAAACAGAGGCCGTTAG 58.249 57.895 0.00 0.00 40.17 2.34
731 732 1.524008 GGACTTCCCCAAAGCAACGG 61.524 60.000 0.00 0.00 38.67 4.44
748 749 1.215382 CAGTCTTGACGGCGATGGA 59.785 57.895 16.62 3.03 0.00 3.41
761 762 1.835927 GAGGCTCCTTGGTGCAGTCT 61.836 60.000 14.46 3.90 0.00 3.24
794 795 2.772191 ATGTGCCCCGATAGCCCA 60.772 61.111 0.00 0.00 0.00 5.36
810 811 1.515020 GAGAGCACTGCGAGGACAT 59.485 57.895 0.00 0.00 0.00 3.06
812 813 2.202544 CGAGAGCACTGCGAGGAC 60.203 66.667 0.00 0.00 0.00 3.85
901 902 2.884207 GTGGTCCGACCGCGATTC 60.884 66.667 15.25 1.97 42.58 2.52
1007 1008 2.948720 GCAGCCACCGGAGAAGAGT 61.949 63.158 9.46 0.00 0.00 3.24
1011 1012 2.244117 GAGATGCAGCCACCGGAGAA 62.244 60.000 9.46 0.00 0.00 2.87
1013 1014 2.202987 GAGATGCAGCCACCGGAG 60.203 66.667 9.46 0.00 0.00 4.63
1026 1027 0.900182 TGCACACCTCCGACAGAGAT 60.900 55.000 0.00 0.00 46.50 2.75
1062 1063 1.450531 GCTCCAAATCCTCCATGCCG 61.451 60.000 0.00 0.00 0.00 5.69
1232 1233 3.439476 CCTGAACTCATGAGAAGCAAAGG 59.561 47.826 29.27 19.48 0.00 3.11
1281 1282 1.079127 CTGTACGCCCTGGTGAAGG 60.079 63.158 3.27 0.00 46.94 3.46
1284 1285 2.603473 AGCTGTACGCCCTGGTGA 60.603 61.111 3.27 0.00 40.39 4.02
1296 1297 3.010584 ACCAAGGTTTGATATGGAGCTGT 59.989 43.478 0.00 0.00 36.75 4.40
1344 1345 1.676635 AGCTTGGACACGCATGCAT 60.677 52.632 19.57 0.00 0.00 3.96
1410 1411 1.521681 GCCGAGTAATTCTGCCGCT 60.522 57.895 0.00 0.00 30.56 5.52
1455 1456 2.960170 CGGTTCTTCGTCTCCGGT 59.040 61.111 0.00 0.00 39.41 5.28
1474 1475 2.771372 GCTTGAAGAGGGAGAGATCCTT 59.229 50.000 0.00 0.00 34.21 3.36
1640 1650 2.472909 GGCGGCAAGAAATCCCTCG 61.473 63.158 3.07 0.00 0.00 4.63
1676 1686 1.583495 ATCACTGTCCGCGTTCGAGA 61.583 55.000 4.92 0.00 38.10 4.04
1764 1774 1.605058 CCCGAACACCTCTCGACCAT 61.605 60.000 0.00 0.00 38.61 3.55
1872 1882 0.530870 GTAGCCTCCAATCAGACGGC 60.531 60.000 0.00 0.00 40.99 5.68
1913 1923 1.077787 TGTTGATGCGGTCCCATCC 60.078 57.895 14.34 4.68 40.66 3.51
1974 2318 0.322816 ACCTACTCTGCGGACCGTTA 60.323 55.000 16.73 4.23 0.00 3.18
1989 2333 4.338710 GCCGGCACCACCAACCTA 62.339 66.667 24.80 0.00 39.03 3.08
2028 2372 1.003580 TGACCAGTTGCCATCTTCTCC 59.996 52.381 0.00 0.00 0.00 3.71
2073 2417 0.035152 TGTCATCTGAAGCGCCCAAT 60.035 50.000 2.29 0.00 0.00 3.16
2202 2546 2.388890 ATAGACCGCCAGCATCCAGC 62.389 60.000 0.00 0.00 46.19 4.85
2220 2564 0.977627 TCTCCTGGTCCACATGCGAT 60.978 55.000 0.00 0.00 0.00 4.58
2247 2591 0.400525 ATGGGATCCCGGATGTCACT 60.401 55.000 26.03 0.00 39.42 3.41
2254 2598 2.694240 TGCCAATGGGATCCCGGA 60.694 61.111 26.03 10.04 39.42 5.14
2271 2615 2.491022 GGTATCCGAGGCTGCGAGT 61.491 63.158 0.00 0.00 0.00 4.18
2326 2672 2.285368 AAGATCCCGCACCCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
2327 2673 2.066999 AGAAGATCCCGCACCCCTC 61.067 63.158 0.00 0.00 0.00 4.30
2367 2713 0.987294 CAACACCCTCCTCCATCAGT 59.013 55.000 0.00 0.00 0.00 3.41
2409 2755 1.399744 ATAGGATCAGTTGCGCCGGA 61.400 55.000 5.05 0.00 0.00 5.14
2536 2882 3.407967 GATCAACCTGGGGGCCGA 61.408 66.667 0.00 0.00 35.63 5.54
2574 2921 2.286872 CTCTCCCACGTACGTAGTCAT 58.713 52.381 22.34 0.00 43.93 3.06
2616 2969 2.859981 GCTGTGCCACCACCAAAGG 61.860 63.158 0.00 0.00 41.35 3.11
2654 3013 2.303163 TAGCCGTAACATTCGCATGT 57.697 45.000 0.00 0.00 46.34 3.21
2783 3142 2.571653 CCTAGGTGTGAATTGGTCCTGA 59.428 50.000 0.00 0.00 0.00 3.86
2791 3150 3.131755 GGTAGTACGCCTAGGTGTGAATT 59.868 47.826 33.54 16.59 39.38 2.17
2850 3209 0.884704 TCAGCCACCGTCTCTTTTGC 60.885 55.000 0.00 0.00 0.00 3.68
2857 3217 3.374402 CCGTCTCAGCCACCGTCT 61.374 66.667 0.00 0.00 0.00 4.18
2976 3336 0.388134 GTCGCGGTCACTTTCAGCTA 60.388 55.000 6.13 0.00 0.00 3.32
2986 3346 0.953471 CCCAAAGATTGTCGCGGTCA 60.953 55.000 6.13 3.16 0.00 4.02
2989 3349 0.447801 CTTCCCAAAGATTGTCGCGG 59.552 55.000 6.13 0.00 34.14 6.46
3048 3409 2.184322 CTACGCGCTCACCATGGT 59.816 61.111 13.00 13.00 0.00 3.55
3058 3419 1.661821 CATGCTCCTACCTACGCGC 60.662 63.158 5.73 0.00 0.00 6.86
3079 3440 5.350504 AAGATTCTCCATGTCAGTACCAG 57.649 43.478 0.00 0.00 0.00 4.00
3101 3466 8.528643 CCATAGGATTGTACGACATAGGAAATA 58.471 37.037 0.00 0.00 0.00 1.40
3153 3519 4.134563 TCTTCTTGACTGGGCTGTTTAAC 58.865 43.478 0.00 0.00 0.00 2.01
3235 3604 4.632327 TGTACTGGTCAACATGATCCAA 57.368 40.909 0.00 0.00 30.93 3.53
3296 3665 3.019564 GTCTTAGAAGCCGGTAGGTACA 58.980 50.000 1.90 0.00 40.50 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.