Multiple sequence alignment - TraesCS2D01G134600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G134600 chr2D 100.000 3581 0 0 1 3581 79231433 79235013 0.000000e+00 6613.0
1 TraesCS2D01G134600 chr2D 84.135 208 24 7 2472 2670 79332699 79332906 3.650000e-45 193.0
2 TraesCS2D01G134600 chr2D 90.909 66 6 0 2533 2598 79260045 79260110 4.920000e-14 89.8
3 TraesCS2D01G134600 chr2B 92.646 3345 146 48 7 3322 123099385 123102658 0.000000e+00 4723.0
4 TraesCS2D01G134600 chr2B 88.786 651 60 6 2683 3327 128259537 128260180 0.000000e+00 785.0
5 TraesCS2D01G134600 chr2B 87.973 291 34 1 3286 3576 128260312 128260601 3.420000e-90 342.0
6 TraesCS2D01G134600 chr2B 88.380 284 32 1 3293 3576 123102803 123103085 1.230000e-89 340.0
7 TraesCS2D01G134600 chr2B 88.053 226 22 3 2447 2668 128311962 128312186 2.740000e-66 263.0
8 TraesCS2D01G134600 chr2B 85.350 157 13 5 2450 2598 123130121 123130275 1.720000e-33 154.0
9 TraesCS2D01G134600 chr2A 91.504 3237 143 40 127 3304 79440489 79443652 0.000000e+00 4333.0
10 TraesCS2D01G134600 chr2A 80.556 288 31 15 2398 2670 79497870 79498147 7.840000e-47 198.0
11 TraesCS2D01G134600 chr2A 89.677 155 12 3 2450 2600 79540979 79541133 1.010000e-45 195.0
12 TraesCS2D01G134600 chr1B 76.636 1070 195 53 1106 2152 20835095 20836132 1.130000e-149 540.0
13 TraesCS2D01G134600 chr1B 81.117 376 65 5 1070 1444 401604288 401603918 2.700000e-76 296.0
14 TraesCS2D01G134600 chr1D 76.323 1077 192 55 1106 2152 15048718 15049761 5.300000e-143 518.0
15 TraesCS2D01G134600 chr1D 82.692 364 56 5 1070 1430 298548489 298548130 2.080000e-82 316.0
16 TraesCS2D01G134600 chr1A 76.297 983 185 44 1115 2077 15518153 15517199 6.950000e-132 481.0
17 TraesCS2D01G134600 chr1A 82.748 313 53 1 1118 1430 372195565 372195254 9.790000e-71 278.0
18 TraesCS2D01G134600 chr1A 81.448 221 40 1 1140 1360 372197540 372197321 2.840000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G134600 chr2D 79231433 79235013 3580 False 6613.0 6613 100.0000 1 3581 1 chr2D.!!$F1 3580
1 TraesCS2D01G134600 chr2B 123099385 123103085 3700 False 2531.5 4723 90.5130 7 3576 2 chr2B.!!$F3 3569
2 TraesCS2D01G134600 chr2B 128259537 128260601 1064 False 563.5 785 88.3795 2683 3576 2 chr2B.!!$F4 893
3 TraesCS2D01G134600 chr2A 79440489 79443652 3163 False 4333.0 4333 91.5040 127 3304 1 chr2A.!!$F1 3177
4 TraesCS2D01G134600 chr1B 20835095 20836132 1037 False 540.0 540 76.6360 1106 2152 1 chr1B.!!$F1 1046
5 TraesCS2D01G134600 chr1D 15048718 15049761 1043 False 518.0 518 76.3230 1106 2152 1 chr1D.!!$F1 1046
6 TraesCS2D01G134600 chr1A 15517199 15518153 954 True 481.0 481 76.2970 1115 2077 1 chr1A.!!$R1 962
7 TraesCS2D01G134600 chr1A 372195254 372197540 2286 True 229.0 278 82.0980 1118 1430 2 chr1A.!!$R2 312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 799 0.108898 CTTCCTCCGCTCACTGTCTG 60.109 60.000 0.00 0.00 0.00 3.51 F
750 800 0.827925 TTCCTCCGCTCACTGTCTGT 60.828 55.000 0.00 0.00 0.00 3.41 F
1285 2144 1.137404 CTTGTACCCGACGTACCGG 59.863 63.158 8.64 8.64 45.89 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 3220 0.320508 CAGCAGCAGCAGAGTGAGAA 60.321 55.000 3.17 0.0 45.49 2.87 R
2319 3221 1.292541 CAGCAGCAGCAGAGTGAGA 59.707 57.895 3.17 0.0 45.49 3.27 R
3043 3963 0.389296 TGGCGTACGATGGAAGTGTG 60.389 55.000 21.65 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 5.047377 TCAAATCCAAGGCAAATCCAGTAAC 60.047 40.000 0.00 0.00 37.29 2.50
110 111 1.225855 TTTTACTCACTGGCGTGCAG 58.774 50.000 0.00 0.00 40.99 4.41
125 126 2.076863 GTGCAGCCAAAGTAACGATCT 58.923 47.619 0.00 0.00 0.00 2.75
138 139 2.370281 ACGATCTGATCAAGCGTGTT 57.630 45.000 17.19 0.00 33.52 3.32
317 321 2.440539 ACAACTAGCCGTTCAGTCAG 57.559 50.000 0.00 0.00 32.27 3.51
359 365 2.990066 AAGAAGCCGGAGTAGGAATG 57.010 50.000 5.05 0.00 0.00 2.67
389 401 4.827087 CAGCCGCAGTCGCCATCT 62.827 66.667 0.00 0.00 33.11 2.90
412 424 2.471255 GCACTGCTGGTGGTGATAC 58.529 57.895 11.18 0.00 45.44 2.24
447 459 5.008712 GGCCCACTAATTATCAGTGCTTTAC 59.991 44.000 0.00 0.00 41.72 2.01
631 667 0.473694 TGGATCCTCCTGGTGTGTGT 60.474 55.000 14.23 0.00 37.46 3.72
633 669 0.687354 GATCCTCCTGGTGTGTGTGT 59.313 55.000 0.00 0.00 34.23 3.72
676 721 4.577677 TGCCCTGCAAGCACGGAA 62.578 61.111 13.21 0.65 34.76 4.30
748 798 0.251386 TCTTCCTCCGCTCACTGTCT 60.251 55.000 0.00 0.00 0.00 3.41
749 799 0.108898 CTTCCTCCGCTCACTGTCTG 60.109 60.000 0.00 0.00 0.00 3.51
750 800 0.827925 TTCCTCCGCTCACTGTCTGT 60.828 55.000 0.00 0.00 0.00 3.41
751 801 1.214062 CCTCCGCTCACTGTCTGTC 59.786 63.158 0.00 0.00 0.00 3.51
812 874 6.936900 GGTATGTATGTATTCACATCAAGCCT 59.063 38.462 0.00 0.00 44.42 4.58
955 1030 3.652057 AGGAACTGAGAGAGGAGAGAG 57.348 52.381 0.00 0.00 37.18 3.20
1285 2144 1.137404 CTTGTACCCGACGTACCGG 59.863 63.158 8.64 8.64 45.89 5.28
1858 2751 3.908189 TCGGCGGTGAAGTCGATA 58.092 55.556 7.21 0.00 43.75 2.92
2323 3225 1.667154 CGATCCCGGAGCACTTCTCA 61.667 60.000 0.73 0.00 43.70 3.27
2442 3353 2.015587 GAAAAGGCAGATGAGGAGCAG 58.984 52.381 0.00 0.00 0.00 4.24
2672 3583 2.093606 TCGCGGTTCTAGAGAGAGAGAA 60.094 50.000 6.13 0.00 31.77 2.87
2673 3584 2.286833 CGCGGTTCTAGAGAGAGAGAAG 59.713 54.545 0.00 0.00 32.43 2.85
2706 3617 1.488812 TCGAAGGGAGAGAGAGAGAGG 59.511 57.143 0.00 0.00 0.00 3.69
2707 3618 1.488812 CGAAGGGAGAGAGAGAGAGGA 59.511 57.143 0.00 0.00 0.00 3.71
2715 3631 4.164221 GGAGAGAGAGAGAGGAGAGAGAAA 59.836 50.000 0.00 0.00 0.00 2.52
2759 3675 2.058829 GAAGCGAGAGGAGAGAGCCG 62.059 65.000 0.00 0.00 0.00 5.52
2778 3694 1.523758 GGGGAGCTATAAATGGCACG 58.476 55.000 1.00 0.00 36.66 5.34
2792 3708 1.448013 GCACGGCAGAAGGGAGTAC 60.448 63.158 0.00 0.00 0.00 2.73
2906 3825 1.469703 TGATTGCAACGGAGCATCAAG 59.530 47.619 0.00 0.00 45.19 3.02
2908 3827 0.537143 TTGCAACGGAGCATCAAGGT 60.537 50.000 4.86 0.00 45.19 3.50
2909 3828 1.236616 TGCAACGGAGCATCAAGGTG 61.237 55.000 0.00 0.00 40.11 4.00
2979 3898 9.865321 AGTCAAATGTCAAAATCATAAATGAGG 57.135 29.630 0.00 0.00 40.64 3.86
2980 3899 9.090692 GTCAAATGTCAAAATCATAAATGAGGG 57.909 33.333 0.00 0.00 40.64 4.30
3007 3927 9.874205 CTTATCTTCTCACATTCTTTTCTCTCT 57.126 33.333 0.00 0.00 0.00 3.10
3008 3928 9.868277 TTATCTTCTCACATTCTTTTCTCTCTC 57.132 33.333 0.00 0.00 0.00 3.20
3009 3929 7.295322 TCTTCTCACATTCTTTTCTCTCTCA 57.705 36.000 0.00 0.00 0.00 3.27
3010 3930 7.730084 TCTTCTCACATTCTTTTCTCTCTCAA 58.270 34.615 0.00 0.00 0.00 3.02
3011 3931 8.206867 TCTTCTCACATTCTTTTCTCTCTCAAA 58.793 33.333 0.00 0.00 0.00 2.69
3012 3932 8.737168 TTCTCACATTCTTTTCTCTCTCAAAA 57.263 30.769 0.00 0.00 0.00 2.44
3043 3963 3.077359 GCCAGCCATATATTCAGACACC 58.923 50.000 0.00 0.00 0.00 4.16
3068 3988 1.591594 CCATCGTACGCCATCGCTT 60.592 57.895 11.24 0.00 39.84 4.68
3099 4019 3.060895 CGATACAACTCAGAAAAGGCGAC 59.939 47.826 0.00 0.00 0.00 5.19
3141 4061 1.539388 CCGTTGCTTGATTTGTAGCCA 59.461 47.619 0.00 0.00 0.00 4.75
3161 4081 3.055591 CACTCCGTGCATGATACATCTC 58.944 50.000 7.72 0.00 0.00 2.75
3180 4100 2.937149 CTCGAGTGACGGAGAATAGTCA 59.063 50.000 3.62 0.00 44.11 3.41
3215 4135 4.688021 GGTGTGGTCTATCTCTTGTGATC 58.312 47.826 0.00 0.00 0.00 2.92
3222 4142 8.516234 GTGGTCTATCTCTTGTGATCGTATATT 58.484 37.037 0.00 0.00 0.00 1.28
3230 4150 3.049912 TGTGATCGTATATTGTGCTCGC 58.950 45.455 0.00 0.00 0.00 5.03
3234 4154 5.401376 GTGATCGTATATTGTGCTCGCTTTA 59.599 40.000 0.00 0.00 0.00 1.85
3244 4164 2.964768 GTGCTCGCTTTAAAACAACTCG 59.035 45.455 0.00 0.00 0.00 4.18
3254 4293 1.264672 AAACAACTCGCAAACGCAAC 58.735 45.000 0.00 0.00 39.84 4.17
3275 4314 3.290308 ACTTCAGAGTGACGCTAGTTG 57.710 47.619 0.00 0.00 33.99 3.16
3279 4318 2.364324 TCAGAGTGACGCTAGTTGGTTT 59.636 45.455 0.00 0.00 0.00 3.27
3280 4319 3.131396 CAGAGTGACGCTAGTTGGTTTT 58.869 45.455 0.00 0.00 0.00 2.43
3283 4322 6.071784 TCAGAGTGACGCTAGTTGGTTTTATA 60.072 38.462 0.00 0.00 0.00 0.98
3284 4323 6.253727 CAGAGTGACGCTAGTTGGTTTTATAG 59.746 42.308 0.00 0.00 0.00 1.31
3289 4384 7.431668 GTGACGCTAGTTGGTTTTATAGTAGAG 59.568 40.741 0.00 0.00 0.00 2.43
3291 4386 6.127535 ACGCTAGTTGGTTTTATAGTAGAGCA 60.128 38.462 0.00 0.00 0.00 4.26
3321 4416 1.822371 TGCACCTAGTGTCGCATTAGA 59.178 47.619 9.73 0.00 35.75 2.10
3322 4417 2.194271 GCACCTAGTGTCGCATTAGAC 58.806 52.381 9.73 0.00 41.30 2.59
3329 4424 5.122554 CCTAGTGTCGCATTAGACGATAGAT 59.877 44.000 9.73 0.00 43.70 1.98
3353 4448 1.865788 ATCTTGTTGCGCCGCATGTT 61.866 50.000 14.63 0.00 38.76 2.71
3368 4463 2.866156 GCATGTTGCGTTAGATGCTAGA 59.134 45.455 11.79 0.00 38.53 2.43
3370 4465 4.376819 GCATGTTGCGTTAGATGCTAGATC 60.377 45.833 11.79 0.00 38.53 2.75
3378 4473 4.672862 CGTTAGATGCTAGATCTGTGTTCG 59.327 45.833 5.18 0.00 0.00 3.95
3384 4479 5.324784 TGCTAGATCTGTGTTCGTTGTAT 57.675 39.130 5.18 0.00 0.00 2.29
3392 4487 8.656849 AGATCTGTGTTCGTTGTATAAATGTTC 58.343 33.333 0.00 0.00 0.00 3.18
3393 4488 7.956420 TCTGTGTTCGTTGTATAAATGTTCT 57.044 32.000 0.00 0.00 0.00 3.01
3437 4532 6.949578 AAATTAAGAATGACCAAATGTGCG 57.050 33.333 0.00 0.00 0.00 5.34
3493 4588 7.362574 CCTCAAAACAAACACCTACAAAGAAGA 60.363 37.037 0.00 0.00 0.00 2.87
3526 4621 5.072741 ACATAGACAATTTGTGTGAAGCCT 58.927 37.500 6.80 0.00 41.96 4.58
3533 4628 8.462016 AGACAATTTGTGTGAAGCCTTTATATC 58.538 33.333 6.80 0.00 41.96 1.63
3534 4629 7.547227 ACAATTTGTGTGAAGCCTTTATATCC 58.453 34.615 0.15 0.00 39.72 2.59
3539 4634 3.181458 TGTGAAGCCTTTATATCCCGGAC 60.181 47.826 0.73 0.00 0.00 4.79
3541 4636 0.320697 AGCCTTTATATCCCGGACGC 59.679 55.000 0.73 0.00 0.00 5.19
3555 4650 3.308866 CCCGGACGCTTTACTTTTATGAG 59.691 47.826 0.73 0.00 0.00 2.90
3556 4651 3.308866 CCGGACGCTTTACTTTTATGAGG 59.691 47.826 0.00 0.00 0.00 3.86
3561 4656 3.689649 CGCTTTACTTTTATGAGGCTGGT 59.310 43.478 0.00 0.00 0.00 4.00
3564 4659 4.650972 TTACTTTTATGAGGCTGGTGGT 57.349 40.909 0.00 0.00 0.00 4.16
3569 4664 1.951209 TATGAGGCTGGTGGTCTTCA 58.049 50.000 0.00 0.00 0.00 3.02
3570 4665 1.067295 ATGAGGCTGGTGGTCTTCAA 58.933 50.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3 4 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
79 80 6.145696 GCCAGTGAGTAAAAACAGTACTGTAG 59.854 42.308 28.13 2.79 44.13 2.74
110 111 4.494855 GCTTGATCAGATCGTTACTTTGGC 60.495 45.833 5.91 0.00 0.00 4.52
113 114 4.327357 CACGCTTGATCAGATCGTTACTTT 59.673 41.667 13.73 0.00 0.00 2.66
125 126 1.337728 ACCGATGAACACGCTTGATCA 60.338 47.619 5.63 5.63 38.74 2.92
138 139 3.952323 CTGGGTAAGTCTAGAACCGATGA 59.048 47.826 6.09 0.00 33.89 2.92
317 321 1.273606 TCTACTGCTGCCACTGAAGAC 59.726 52.381 0.00 0.00 0.00 3.01
359 365 3.423154 GGCTGCAGGTGCGTGTAC 61.423 66.667 17.12 0.00 45.83 2.90
389 401 4.007644 CCACCAGCAGTGCTCGGA 62.008 66.667 29.06 0.00 45.83 4.55
412 424 2.702592 TAGTGGGCCGATAAAGGTTG 57.297 50.000 0.00 0.00 0.00 3.77
465 477 4.263156 GGGTTGGTTGGAACATACTAGTCA 60.263 45.833 0.00 0.00 39.30 3.41
631 667 0.320421 GAACCGCCTCTGCTGTTACA 60.320 55.000 0.00 0.00 43.76 2.41
633 669 0.320421 GTGAACCGCCTCTGCTGTTA 60.320 55.000 0.00 0.00 43.76 2.41
748 798 3.880490 AGTTACAATTTTGCGTCCTGACA 59.120 39.130 0.00 0.00 0.00 3.58
749 799 4.024387 TCAGTTACAATTTTGCGTCCTGAC 60.024 41.667 0.00 0.00 0.00 3.51
750 800 4.130857 TCAGTTACAATTTTGCGTCCTGA 58.869 39.130 0.00 0.00 0.00 3.86
751 801 4.481930 TCAGTTACAATTTTGCGTCCTG 57.518 40.909 0.00 0.00 0.00 3.86
812 874 0.249447 GATGTGCCCGTGATCGATCA 60.249 55.000 23.99 23.99 39.71 2.92
948 1023 5.470047 TTTACAGACACCTTTCTCTCTCC 57.530 43.478 0.00 0.00 0.00 3.71
952 1027 8.697507 ATCAAAATTTACAGACACCTTTCTCT 57.302 30.769 0.00 0.00 0.00 3.10
953 1028 8.787852 AGATCAAAATTTACAGACACCTTTCTC 58.212 33.333 0.00 0.00 0.00 2.87
954 1029 8.697507 AGATCAAAATTTACAGACACCTTTCT 57.302 30.769 0.00 0.00 0.00 2.52
1044 1127 0.890090 CCGGCCGAAAACCAAACCTA 60.890 55.000 30.73 0.00 0.00 3.08
2318 3220 0.320508 CAGCAGCAGCAGAGTGAGAA 60.321 55.000 3.17 0.00 45.49 2.87
2319 3221 1.292541 CAGCAGCAGCAGAGTGAGA 59.707 57.895 3.17 0.00 45.49 3.27
2323 3225 4.311445 ACGCAGCAGCAGCAGAGT 62.311 61.111 10.77 0.00 45.49 3.24
2442 3353 4.760047 TGAGCGGCTTCTTCGGCC 62.760 66.667 2.97 0.00 45.57 6.13
2672 3583 2.170607 CCCTTCGACTCTCTCTCTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
2673 3584 2.169769 TCCCTTCGACTCTCTCTCTCTC 59.830 54.545 0.00 0.00 0.00 3.20
2715 3631 2.158519 ACAATCCAAAACCCCGAGAACT 60.159 45.455 0.00 0.00 0.00 3.01
2759 3675 1.523758 CGTGCCATTTATAGCTCCCC 58.476 55.000 0.00 0.00 0.00 4.81
2778 3694 4.096532 GCTAATTTTGTACTCCCTTCTGCC 59.903 45.833 0.00 0.00 0.00 4.85
2792 3708 2.031683 CCTCTAACCGCCGCTAATTTTG 59.968 50.000 0.00 0.00 0.00 2.44
2846 3764 1.710244 TCAAGGATGTTCCATGGGTGT 59.290 47.619 13.02 0.00 39.61 4.16
2869 3787 4.821260 GCAATCAAAGGACCCACAATTTTT 59.179 37.500 0.00 0.00 0.00 1.94
2906 3825 2.951475 TTTGCGCCGATATCCCCACC 62.951 60.000 4.18 0.00 0.00 4.61
2908 3827 1.227823 CTTTGCGCCGATATCCCCA 60.228 57.895 4.18 0.00 0.00 4.96
2909 3828 2.617274 GCTTTGCGCCGATATCCCC 61.617 63.158 4.18 0.00 0.00 4.81
2979 3898 7.552330 AGAGAAAAGAATGTGAGAAGATAAGCC 59.448 37.037 0.00 0.00 0.00 4.35
2980 3899 8.491331 AGAGAAAAGAATGTGAGAAGATAAGC 57.509 34.615 0.00 0.00 0.00 3.09
3012 3932 9.768662 CTGAATATATGGCTGGCTTTAATTTTT 57.231 29.630 2.00 0.00 0.00 1.94
3043 3963 0.389296 TGGCGTACGATGGAAGTGTG 60.389 55.000 21.65 0.00 0.00 3.82
3099 4019 2.082354 GCGGGAAAAGCGAGAAGAG 58.918 57.895 0.00 0.00 0.00 2.85
3121 4041 1.539388 TGGCTACAAATCAAGCAACGG 59.461 47.619 0.00 0.00 40.61 4.44
3123 4043 3.366374 GGAGTGGCTACAAATCAAGCAAC 60.366 47.826 2.02 0.00 42.06 4.17
3161 4081 3.972950 ATGACTATTCTCCGTCACTCG 57.027 47.619 0.00 0.00 42.32 4.18
3180 4100 5.099042 AGACCACACCGCTTTATCTAAAT 57.901 39.130 0.00 0.00 0.00 1.40
3215 4135 6.244999 TGTTTTAAAGCGAGCACAATATACG 58.755 36.000 0.00 0.00 0.00 3.06
3222 4142 3.545228 CGAGTTGTTTTAAAGCGAGCACA 60.545 43.478 0.00 0.00 0.00 4.57
3230 4150 4.084447 GCGTTTGCGAGTTGTTTTAAAG 57.916 40.909 0.00 0.00 41.33 1.85
3244 4164 1.064060 ACTCTGAAGTGTTGCGTTTGC 59.936 47.619 0.00 0.00 36.47 3.68
3291 4386 4.870426 CGACACTAGGTGCAACAAGATATT 59.130 41.667 3.64 0.00 39.98 1.28
3304 4399 2.362736 TCGTCTAATGCGACACTAGGT 58.637 47.619 0.00 0.00 33.54 3.08
3307 4402 5.121925 GGATCTATCGTCTAATGCGACACTA 59.878 44.000 0.00 0.00 41.33 2.74
3321 4416 5.164233 CGCAACAAGATATGGATCTATCGT 58.836 41.667 0.00 0.00 41.87 3.73
3322 4417 4.032217 GCGCAACAAGATATGGATCTATCG 59.968 45.833 0.30 0.00 41.87 2.92
3329 4424 1.436195 GCGGCGCAACAAGATATGGA 61.436 55.000 29.21 0.00 0.00 3.41
3353 4448 3.381590 ACACAGATCTAGCATCTAACGCA 59.618 43.478 0.00 0.00 0.00 5.24
3368 4463 8.547967 AGAACATTTATACAACGAACACAGAT 57.452 30.769 0.00 0.00 0.00 2.90
3370 4465 9.445786 AAAAGAACATTTATACAACGAACACAG 57.554 29.630 0.00 0.00 0.00 3.66
3416 4511 5.415701 AGACGCACATTTGGTCATTCTTAAT 59.584 36.000 4.14 0.00 33.18 1.40
3425 4520 1.333619 ACACAAGACGCACATTTGGTC 59.666 47.619 0.00 0.00 0.00 4.02
3433 4528 2.288273 ACTAGAAGGACACAAGACGCAC 60.288 50.000 0.00 0.00 0.00 5.34
3437 4532 3.060602 GCACACTAGAAGGACACAAGAC 58.939 50.000 0.00 0.00 0.00 3.01
3493 4588 9.944376 ACACAAATTGTCTATGTATACTTCTGT 57.056 29.630 4.17 0.00 29.79 3.41
3516 4611 3.139077 CCGGGATATAAAGGCTTCACAC 58.861 50.000 0.00 0.00 0.00 3.82
3523 4618 0.320697 AGCGTCCGGGATATAAAGGC 59.679 55.000 0.00 0.00 0.00 4.35
3526 4621 4.942761 AGTAAAGCGTCCGGGATATAAA 57.057 40.909 0.00 0.00 0.00 1.40
3533 4628 3.264104 TCATAAAAGTAAAGCGTCCGGG 58.736 45.455 0.00 0.00 0.00 5.73
3534 4629 3.308866 CCTCATAAAAGTAAAGCGTCCGG 59.691 47.826 0.00 0.00 0.00 5.14
3539 4634 3.689649 ACCAGCCTCATAAAAGTAAAGCG 59.310 43.478 0.00 0.00 0.00 4.68
3541 4636 5.010282 ACCACCAGCCTCATAAAAGTAAAG 58.990 41.667 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.