Multiple sequence alignment - TraesCS2D01G133400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G133400 chr2D 100.000 2912 0 0 1 2912 78529768 78526857 0.000000e+00 5378.0
1 TraesCS2D01G133400 chr2A 95.024 2733 94 17 1 2711 78811214 78808502 0.000000e+00 4255.0
2 TraesCS2D01G133400 chr2B 96.593 2025 47 13 1 2003 121669153 121667129 0.000000e+00 3338.0
3 TraesCS2D01G133400 chr2B 87.022 601 37 5 2121 2718 121667118 121666556 8.800000e-180 640.0
4 TraesCS2D01G133400 chr2B 92.857 196 11 2 2709 2902 121648335 121648141 6.140000e-72 281.0
5 TraesCS2D01G133400 chr2B 94.737 76 2 2 1996 2069 646975986 646975911 1.830000e-22 117.0
6 TraesCS2D01G133400 chr3D 97.101 69 2 0 1988 2056 43024295 43024227 1.830000e-22 117.0
7 TraesCS2D01G133400 chr3D 86.735 98 9 4 1961 2056 5616083 5616178 3.970000e-19 106.0
8 TraesCS2D01G133400 chr3D 86.154 65 9 0 1065 1129 575597100 575597036 1.450000e-08 71.3
9 TraesCS2D01G133400 chr7D 96.970 66 2 0 1993 2058 93783196 93783261 8.530000e-21 111.0
10 TraesCS2D01G133400 chr5B 96.970 66 2 0 1993 2058 562971340 562971275 8.530000e-21 111.0
11 TraesCS2D01G133400 chr6D 95.455 66 3 0 1991 2056 7565196 7565261 3.970000e-19 106.0
12 TraesCS2D01G133400 chr6D 96.875 64 1 1 1993 2056 413075625 413075563 3.970000e-19 106.0
13 TraesCS2D01G133400 chr6B 95.455 66 2 1 1991 2056 622732458 622732522 1.430000e-18 104.0
14 TraesCS2D01G133400 chr3B 89.286 56 6 0 1065 1120 766378783 766378838 1.450000e-08 71.3
15 TraesCS2D01G133400 chr3A 86.154 65 9 0 1065 1129 711078528 711078464 1.450000e-08 71.3
16 TraesCS2D01G133400 chr1B 80.000 85 15 2 1065 1148 634498392 634498309 8.710000e-06 62.1
17 TraesCS2D01G133400 chr1A 87.755 49 6 0 1065 1113 552964477 552964429 1.130000e-04 58.4
18 TraesCS2D01G133400 chrUn 92.308 39 3 0 1075 1113 211006508 211006470 4.050000e-04 56.5
19 TraesCS2D01G133400 chr1D 100.000 29 0 0 1085 1113 461502098 461502070 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G133400 chr2D 78526857 78529768 2911 True 5378 5378 100.0000 1 2912 1 chr2D.!!$R1 2911
1 TraesCS2D01G133400 chr2A 78808502 78811214 2712 True 4255 4255 95.0240 1 2711 1 chr2A.!!$R1 2710
2 TraesCS2D01G133400 chr2B 121666556 121669153 2597 True 1989 3338 91.8075 1 2718 2 chr2B.!!$R3 2717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 4.371624 TGGAAGATACATGCCCTTATGG 57.628 45.455 0.0 0.0 32.32 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2075 0.255318 ATACTCCCTCCGACGTGTCT 59.745 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 4.371624 TGGAAGATACATGCCCTTATGG 57.628 45.455 0.00 0.00 32.32 2.74
224 225 5.364778 AGGCAAACAAACAAGGGATTTTAC 58.635 37.500 0.00 0.00 0.00 2.01
1577 1599 7.060421 GGTTTAATTCCTGGAGTCAATATGGA 58.940 38.462 0.00 0.00 0.00 3.41
1590 1612 5.980116 AGTCAATATGGACGAAGATTTCTCG 59.020 40.000 4.54 0.00 42.62 4.04
1639 1661 2.526304 TCGCAAGCTTAAGAGTGTGT 57.474 45.000 6.67 0.00 37.18 3.72
1961 1985 7.899172 TGTTATGAATATAGCTTAGAGCCCCTA 59.101 37.037 0.00 0.00 43.77 3.53
2021 2046 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2112 2137 4.608514 TTGCCTCCACCCCCTCCA 62.609 66.667 0.00 0.00 0.00 3.86
2118 2143 2.284405 CCACCCCCTCCAGTACGT 60.284 66.667 0.00 0.00 0.00 3.57
2219 2261 5.427157 TCCTATACAATTGACCAGCCAACTA 59.573 40.000 13.59 0.00 0.00 2.24
2220 2262 5.760253 CCTATACAATTGACCAGCCAACTAG 59.240 44.000 13.59 0.00 0.00 2.57
2221 2263 3.508845 ACAATTGACCAGCCAACTAGT 57.491 42.857 13.59 0.00 0.00 2.57
2222 2264 3.412386 ACAATTGACCAGCCAACTAGTC 58.588 45.455 13.59 0.00 35.37 2.59
2223 2265 2.386661 ATTGACCAGCCAACTAGTCG 57.613 50.000 0.00 0.00 37.36 4.18
2224 2266 1.045407 TTGACCAGCCAACTAGTCGT 58.955 50.000 0.00 0.00 37.36 4.34
2225 2267 1.913778 TGACCAGCCAACTAGTCGTA 58.086 50.000 0.00 0.00 37.36 3.43
2226 2268 1.816835 TGACCAGCCAACTAGTCGTAG 59.183 52.381 0.00 0.00 37.36 3.51
2227 2269 1.817447 GACCAGCCAACTAGTCGTAGT 59.183 52.381 0.00 0.00 41.61 2.73
2228 2270 1.544691 ACCAGCCAACTAGTCGTAGTG 59.455 52.381 0.00 0.00 39.60 2.74
2229 2271 1.816835 CCAGCCAACTAGTCGTAGTGA 59.183 52.381 0.00 0.00 39.60 3.41
2230 2272 2.427453 CCAGCCAACTAGTCGTAGTGAT 59.573 50.000 0.00 0.00 39.60 3.06
2231 2273 3.439293 CAGCCAACTAGTCGTAGTGATG 58.561 50.000 0.00 0.00 39.60 3.07
2232 2274 3.090037 AGCCAACTAGTCGTAGTGATGT 58.910 45.455 0.00 0.00 39.60 3.06
2233 2275 3.128938 AGCCAACTAGTCGTAGTGATGTC 59.871 47.826 0.00 0.00 39.60 3.06
2234 2276 3.128938 GCCAACTAGTCGTAGTGATGTCT 59.871 47.826 0.00 0.00 39.60 3.41
2235 2277 4.731193 GCCAACTAGTCGTAGTGATGTCTC 60.731 50.000 0.00 0.00 39.60 3.36
2236 2278 4.201930 CCAACTAGTCGTAGTGATGTCTCC 60.202 50.000 0.00 0.00 39.60 3.71
2237 2279 4.490899 ACTAGTCGTAGTGATGTCTCCT 57.509 45.455 0.00 0.00 38.14 3.69
2297 2339 7.186570 TGGAGAATCAGAGAATGTATGTTGA 57.813 36.000 0.00 0.00 36.25 3.18
2298 2340 7.044181 TGGAGAATCAGAGAATGTATGTTGAC 58.956 38.462 0.00 0.00 36.25 3.18
2299 2341 7.044181 GGAGAATCAGAGAATGTATGTTGACA 58.956 38.462 0.00 0.00 36.25 3.58
2323 2365 6.902771 AGTAATAGCCTCGATGACTATGTT 57.097 37.500 3.57 0.00 0.00 2.71
2335 2377 3.797039 TGACTATGTTGCTATGAGTGGC 58.203 45.455 0.00 0.00 0.00 5.01
2336 2378 3.452264 TGACTATGTTGCTATGAGTGGCT 59.548 43.478 0.00 0.00 32.28 4.75
2420 2462 2.436087 GATCCTATGTGCCCGACCGG 62.436 65.000 0.00 0.00 0.00 5.28
2429 2471 4.483243 CCCGACCGGACCAATGGG 62.483 72.222 9.46 3.99 37.50 4.00
2492 2534 1.821216 AGACCGTTTAGTGGCCAATG 58.179 50.000 17.71 0.98 0.00 2.82
2534 2576 1.261619 AGCGTTGCTTTTGACTCTTCG 59.738 47.619 0.00 0.00 33.89 3.79
2541 2583 1.266989 CTTTTGACTCTTCGCCAACCC 59.733 52.381 0.00 0.00 0.00 4.11
2543 2585 1.344065 TTGACTCTTCGCCAACCCTA 58.656 50.000 0.00 0.00 0.00 3.53
2641 2683 0.108186 TCACGGGCTATCTTGTGCAG 60.108 55.000 0.00 0.00 32.48 4.41
2668 2710 4.567537 CCAGTAGGGGTCATCAATGAACAA 60.568 45.833 10.06 0.00 46.20 2.83
2676 2718 5.235186 GGGTCATCAATGAACAATACTCTCG 59.765 44.000 10.06 0.00 46.20 4.04
2682 2724 7.490962 TCAATGAACAATACTCTCGTTTTGT 57.509 32.000 0.00 0.00 43.87 2.83
2701 2743 1.443872 CGTGTAGACTCGTGGCACC 60.444 63.158 12.86 0.00 0.00 5.01
2737 2779 7.627585 TTTTGTTATGTGTGACTACGACTAC 57.372 36.000 0.00 0.00 0.00 2.73
2738 2780 5.300969 TGTTATGTGTGACTACGACTACC 57.699 43.478 0.00 0.00 0.00 3.18
2739 2781 4.156556 TGTTATGTGTGACTACGACTACCC 59.843 45.833 0.00 0.00 0.00 3.69
2740 2782 2.574006 TGTGTGACTACGACTACCCT 57.426 50.000 0.00 0.00 0.00 4.34
2741 2783 3.701205 TGTGTGACTACGACTACCCTA 57.299 47.619 0.00 0.00 0.00 3.53
2742 2784 3.603532 TGTGTGACTACGACTACCCTAG 58.396 50.000 0.00 0.00 0.00 3.02
2743 2785 2.941720 GTGTGACTACGACTACCCTAGG 59.058 54.545 0.06 0.06 0.00 3.02
2744 2786 2.092753 TGTGACTACGACTACCCTAGGG 60.093 54.545 27.36 27.36 42.03 3.53
2755 2797 3.882131 CCCTAGGGTCATGTGTTGG 57.118 57.895 20.88 0.00 0.00 3.77
2756 2798 0.991920 CCCTAGGGTCATGTGTTGGT 59.008 55.000 20.88 0.00 0.00 3.67
2757 2799 1.354368 CCCTAGGGTCATGTGTTGGTT 59.646 52.381 20.88 0.00 0.00 3.67
2758 2800 2.436417 CCTAGGGTCATGTGTTGGTTG 58.564 52.381 0.00 0.00 0.00 3.77
2759 2801 2.224769 CCTAGGGTCATGTGTTGGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
2760 2802 2.452600 AGGGTCATGTGTTGGTTGTT 57.547 45.000 0.00 0.00 0.00 2.83
2761 2803 2.306847 AGGGTCATGTGTTGGTTGTTC 58.693 47.619 0.00 0.00 0.00 3.18
2762 2804 2.028130 GGGTCATGTGTTGGTTGTTCA 58.972 47.619 0.00 0.00 0.00 3.18
2763 2805 2.428890 GGGTCATGTGTTGGTTGTTCAA 59.571 45.455 0.00 0.00 0.00 2.69
2764 2806 3.118956 GGGTCATGTGTTGGTTGTTCAAA 60.119 43.478 0.00 0.00 0.00 2.69
2765 2807 4.111916 GGTCATGTGTTGGTTGTTCAAAG 58.888 43.478 0.00 0.00 0.00 2.77
2766 2808 4.111916 GTCATGTGTTGGTTGTTCAAAGG 58.888 43.478 0.00 0.00 0.00 3.11
2767 2809 3.766591 TCATGTGTTGGTTGTTCAAAGGT 59.233 39.130 0.00 0.00 0.00 3.50
2768 2810 4.221703 TCATGTGTTGGTTGTTCAAAGGTT 59.778 37.500 0.00 0.00 0.00 3.50
2769 2811 4.608948 TGTGTTGGTTGTTCAAAGGTTT 57.391 36.364 0.00 0.00 0.00 3.27
2770 2812 4.310769 TGTGTTGGTTGTTCAAAGGTTTG 58.689 39.130 0.00 0.00 39.48 2.93
2771 2813 3.682377 GTGTTGGTTGTTCAAAGGTTTGG 59.318 43.478 2.69 0.00 38.66 3.28
2772 2814 3.325135 TGTTGGTTGTTCAAAGGTTTGGT 59.675 39.130 2.69 0.00 38.66 3.67
2773 2815 4.202367 TGTTGGTTGTTCAAAGGTTTGGTT 60.202 37.500 2.69 0.00 38.66 3.67
2774 2816 4.625607 TGGTTGTTCAAAGGTTTGGTTT 57.374 36.364 2.69 0.00 38.66 3.27
2775 2817 4.319177 TGGTTGTTCAAAGGTTTGGTTTG 58.681 39.130 2.69 0.00 38.66 2.93
2776 2818 3.687212 GGTTGTTCAAAGGTTTGGTTTGG 59.313 43.478 2.69 0.00 38.66 3.28
2777 2819 4.320023 GTTGTTCAAAGGTTTGGTTTGGT 58.680 39.130 2.69 0.00 38.66 3.67
2778 2820 4.625607 TGTTCAAAGGTTTGGTTTGGTT 57.374 36.364 2.69 0.00 38.66 3.67
2779 2821 5.740290 TGTTCAAAGGTTTGGTTTGGTTA 57.260 34.783 2.69 0.00 38.66 2.85
2780 2822 5.480205 TGTTCAAAGGTTTGGTTTGGTTAC 58.520 37.500 2.69 0.00 38.66 2.50
2781 2823 5.011738 TGTTCAAAGGTTTGGTTTGGTTACA 59.988 36.000 2.69 0.00 38.66 2.41
2782 2824 5.941555 TCAAAGGTTTGGTTTGGTTACAT 57.058 34.783 2.69 0.00 38.66 2.29
2783 2825 5.665459 TCAAAGGTTTGGTTTGGTTACATG 58.335 37.500 2.69 0.00 38.66 3.21
2784 2826 5.187967 TCAAAGGTTTGGTTTGGTTACATGT 59.812 36.000 2.69 2.69 38.66 3.21
2785 2827 4.929819 AGGTTTGGTTTGGTTACATGTC 57.070 40.909 0.00 0.00 0.00 3.06
2786 2828 4.282496 AGGTTTGGTTTGGTTACATGTCA 58.718 39.130 0.00 0.00 0.00 3.58
2787 2829 4.340950 AGGTTTGGTTTGGTTACATGTCAG 59.659 41.667 0.00 0.00 0.00 3.51
2788 2830 4.098807 GGTTTGGTTTGGTTACATGTCAGT 59.901 41.667 0.00 0.00 0.00 3.41
2789 2831 5.394773 GGTTTGGTTTGGTTACATGTCAGTT 60.395 40.000 0.00 0.00 0.00 3.16
2790 2832 4.909696 TGGTTTGGTTACATGTCAGTTG 57.090 40.909 0.00 0.00 0.00 3.16
2791 2833 3.634448 TGGTTTGGTTACATGTCAGTTGG 59.366 43.478 0.00 0.00 0.00 3.77
2792 2834 3.886505 GGTTTGGTTACATGTCAGTTGGA 59.113 43.478 0.00 0.00 0.00 3.53
2793 2835 4.023193 GGTTTGGTTACATGTCAGTTGGAG 60.023 45.833 0.00 0.00 0.00 3.86
2794 2836 4.431416 TTGGTTACATGTCAGTTGGAGT 57.569 40.909 0.00 0.00 0.00 3.85
2795 2837 4.431416 TGGTTACATGTCAGTTGGAGTT 57.569 40.909 0.00 0.00 0.00 3.01
2796 2838 4.133820 TGGTTACATGTCAGTTGGAGTTG 58.866 43.478 0.00 0.00 0.00 3.16
2797 2839 4.134563 GGTTACATGTCAGTTGGAGTTGT 58.865 43.478 0.00 0.00 0.00 3.32
2798 2840 4.024048 GGTTACATGTCAGTTGGAGTTGTG 60.024 45.833 0.00 0.00 0.00 3.33
2799 2841 3.281727 ACATGTCAGTTGGAGTTGTGT 57.718 42.857 0.00 0.00 0.00 3.72
2800 2842 3.620488 ACATGTCAGTTGGAGTTGTGTT 58.380 40.909 0.00 0.00 0.00 3.32
2801 2843 3.378112 ACATGTCAGTTGGAGTTGTGTTG 59.622 43.478 0.00 0.00 0.00 3.33
2802 2844 3.342377 TGTCAGTTGGAGTTGTGTTGA 57.658 42.857 0.00 0.00 0.00 3.18
2803 2845 3.270027 TGTCAGTTGGAGTTGTGTTGAG 58.730 45.455 0.00 0.00 0.00 3.02
2804 2846 2.032178 GTCAGTTGGAGTTGTGTTGAGC 59.968 50.000 0.00 0.00 0.00 4.26
2805 2847 2.016318 CAGTTGGAGTTGTGTTGAGCA 58.984 47.619 0.00 0.00 0.00 4.26
2806 2848 2.620115 CAGTTGGAGTTGTGTTGAGCAT 59.380 45.455 0.00 0.00 0.00 3.79
2807 2849 2.620115 AGTTGGAGTTGTGTTGAGCATG 59.380 45.455 0.00 0.00 0.00 4.06
2808 2850 2.618241 GTTGGAGTTGTGTTGAGCATGA 59.382 45.455 0.00 0.00 0.00 3.07
2809 2851 3.144657 TGGAGTTGTGTTGAGCATGAT 57.855 42.857 0.00 0.00 0.00 2.45
2810 2852 3.489355 TGGAGTTGTGTTGAGCATGATT 58.511 40.909 0.00 0.00 0.00 2.57
2811 2853 3.253921 TGGAGTTGTGTTGAGCATGATTG 59.746 43.478 0.00 0.00 0.00 2.67
2812 2854 3.254166 GGAGTTGTGTTGAGCATGATTGT 59.746 43.478 0.00 0.00 0.00 2.71
2813 2855 4.455533 GGAGTTGTGTTGAGCATGATTGTA 59.544 41.667 0.00 0.00 0.00 2.41
2814 2856 5.124457 GGAGTTGTGTTGAGCATGATTGTAT 59.876 40.000 0.00 0.00 0.00 2.29
2815 2857 6.316140 GGAGTTGTGTTGAGCATGATTGTATA 59.684 38.462 0.00 0.00 0.00 1.47
2816 2858 7.012704 GGAGTTGTGTTGAGCATGATTGTATAT 59.987 37.037 0.00 0.00 0.00 0.86
2817 2859 7.700505 AGTTGTGTTGAGCATGATTGTATATG 58.299 34.615 0.00 0.00 0.00 1.78
2818 2860 7.553760 AGTTGTGTTGAGCATGATTGTATATGA 59.446 33.333 0.00 0.00 0.00 2.15
2819 2861 7.486802 TGTGTTGAGCATGATTGTATATGAG 57.513 36.000 0.00 0.00 0.00 2.90
2820 2862 6.484308 TGTGTTGAGCATGATTGTATATGAGG 59.516 38.462 0.00 0.00 0.00 3.86
2821 2863 5.999600 TGTTGAGCATGATTGTATATGAGGG 59.000 40.000 0.00 0.00 0.00 4.30
2822 2864 5.169992 TGAGCATGATTGTATATGAGGGG 57.830 43.478 0.00 0.00 0.00 4.79
2823 2865 4.019051 TGAGCATGATTGTATATGAGGGGG 60.019 45.833 0.00 0.00 0.00 5.40
2824 2866 4.178339 AGCATGATTGTATATGAGGGGGA 58.822 43.478 0.00 0.00 0.00 4.81
2825 2867 4.792426 AGCATGATTGTATATGAGGGGGAT 59.208 41.667 0.00 0.00 0.00 3.85
2826 2868 4.885907 GCATGATTGTATATGAGGGGGATG 59.114 45.833 0.00 0.00 0.00 3.51
2827 2869 5.574326 GCATGATTGTATATGAGGGGGATGT 60.574 44.000 0.00 0.00 0.00 3.06
2828 2870 5.503634 TGATTGTATATGAGGGGGATGTG 57.496 43.478 0.00 0.00 0.00 3.21
2829 2871 4.913355 TGATTGTATATGAGGGGGATGTGT 59.087 41.667 0.00 0.00 0.00 3.72
2830 2872 5.372363 TGATTGTATATGAGGGGGATGTGTT 59.628 40.000 0.00 0.00 0.00 3.32
2831 2873 5.725551 TTGTATATGAGGGGGATGTGTTT 57.274 39.130 0.00 0.00 0.00 2.83
2832 2874 5.047566 TGTATATGAGGGGGATGTGTTTG 57.952 43.478 0.00 0.00 0.00 2.93
2833 2875 4.476846 TGTATATGAGGGGGATGTGTTTGT 59.523 41.667 0.00 0.00 0.00 2.83
2834 2876 2.220653 ATGAGGGGGATGTGTTTGTG 57.779 50.000 0.00 0.00 0.00 3.33
2835 2877 1.144691 TGAGGGGGATGTGTTTGTGA 58.855 50.000 0.00 0.00 0.00 3.58
2836 2878 1.710244 TGAGGGGGATGTGTTTGTGAT 59.290 47.619 0.00 0.00 0.00 3.06
2837 2879 2.109834 TGAGGGGGATGTGTTTGTGATT 59.890 45.455 0.00 0.00 0.00 2.57
2838 2880 3.165071 GAGGGGGATGTGTTTGTGATTT 58.835 45.455 0.00 0.00 0.00 2.17
2839 2881 3.578282 GAGGGGGATGTGTTTGTGATTTT 59.422 43.478 0.00 0.00 0.00 1.82
2840 2882 3.578282 AGGGGGATGTGTTTGTGATTTTC 59.422 43.478 0.00 0.00 0.00 2.29
2841 2883 3.306710 GGGGGATGTGTTTGTGATTTTCC 60.307 47.826 0.00 0.00 0.00 3.13
2842 2884 3.323403 GGGGATGTGTTTGTGATTTTCCA 59.677 43.478 0.00 0.00 0.00 3.53
2843 2885 4.559153 GGGATGTGTTTGTGATTTTCCAG 58.441 43.478 0.00 0.00 0.00 3.86
2844 2886 4.559153 GGATGTGTTTGTGATTTTCCAGG 58.441 43.478 0.00 0.00 0.00 4.45
2845 2887 4.280677 GGATGTGTTTGTGATTTTCCAGGA 59.719 41.667 0.00 0.00 0.00 3.86
2846 2888 5.047092 GGATGTGTTTGTGATTTTCCAGGAT 60.047 40.000 0.00 0.00 0.00 3.24
2847 2889 5.452078 TGTGTTTGTGATTTTCCAGGATC 57.548 39.130 0.00 0.00 0.00 3.36
2848 2890 4.023279 TGTGTTTGTGATTTTCCAGGATCG 60.023 41.667 0.00 0.00 0.00 3.69
2849 2891 3.057596 TGTTTGTGATTTTCCAGGATCGC 60.058 43.478 0.00 0.00 34.28 4.58
2850 2892 2.787473 TGTGATTTTCCAGGATCGCT 57.213 45.000 0.00 0.00 34.66 4.93
2851 2893 2.358957 TGTGATTTTCCAGGATCGCTG 58.641 47.619 0.00 4.67 34.66 5.18
2852 2894 1.672881 GTGATTTTCCAGGATCGCTGG 59.327 52.381 19.03 19.03 43.06 4.85
2853 2895 1.281867 TGATTTTCCAGGATCGCTGGT 59.718 47.619 22.26 9.36 42.35 4.00
2854 2896 2.290896 TGATTTTCCAGGATCGCTGGTT 60.291 45.455 22.26 11.19 42.35 3.67
2855 2897 1.533625 TTTTCCAGGATCGCTGGTTG 58.466 50.000 22.26 5.37 42.35 3.77
2856 2898 0.400213 TTTCCAGGATCGCTGGTTGT 59.600 50.000 22.26 0.00 42.35 3.32
2857 2899 0.400213 TTCCAGGATCGCTGGTTGTT 59.600 50.000 22.26 0.00 42.35 2.83
2858 2900 0.321564 TCCAGGATCGCTGGTTGTTG 60.322 55.000 22.26 4.29 42.35 3.33
2859 2901 0.321564 CCAGGATCGCTGGTTGTTGA 60.322 55.000 17.57 0.00 37.22 3.18
2860 2902 1.522668 CAGGATCGCTGGTTGTTGAA 58.477 50.000 3.90 0.00 0.00 2.69
2861 2903 1.466167 CAGGATCGCTGGTTGTTGAAG 59.534 52.381 3.90 0.00 0.00 3.02
2862 2904 0.804989 GGATCGCTGGTTGTTGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
2863 2905 1.523758 GATCGCTGGTTGTTGAAGGT 58.476 50.000 0.00 0.00 0.00 3.50
2864 2906 2.614481 GGATCGCTGGTTGTTGAAGGTA 60.614 50.000 0.00 0.00 0.00 3.08
2865 2907 2.623878 TCGCTGGTTGTTGAAGGTAA 57.376 45.000 0.00 0.00 0.00 2.85
2866 2908 2.215196 TCGCTGGTTGTTGAAGGTAAC 58.785 47.619 0.00 0.00 0.00 2.50
2867 2909 1.265905 CGCTGGTTGTTGAAGGTAACC 59.734 52.381 0.00 0.00 43.20 2.85
2868 2910 1.265905 GCTGGTTGTTGAAGGTAACCG 59.734 52.381 0.00 0.00 45.27 4.44
2869 2911 1.877443 CTGGTTGTTGAAGGTAACCGG 59.123 52.381 0.00 0.00 45.27 5.28
2870 2912 1.241165 GGTTGTTGAAGGTAACCGGG 58.759 55.000 6.32 0.00 35.06 5.73
2871 2913 1.202794 GGTTGTTGAAGGTAACCGGGA 60.203 52.381 6.32 0.00 35.06 5.14
2872 2914 1.875514 GTTGTTGAAGGTAACCGGGAC 59.124 52.381 6.32 2.74 37.17 4.46
2873 2915 1.426751 TGTTGAAGGTAACCGGGACT 58.573 50.000 6.32 0.00 37.17 3.85
2874 2916 1.071071 TGTTGAAGGTAACCGGGACTG 59.929 52.381 6.32 0.00 37.17 3.51
2875 2917 0.688487 TTGAAGGTAACCGGGACTGG 59.312 55.000 6.32 0.00 37.17 4.00
2876 2918 0.472352 TGAAGGTAACCGGGACTGGT 60.472 55.000 6.32 0.00 46.67 4.00
2877 2919 0.248565 GAAGGTAACCGGGACTGGTC 59.751 60.000 6.32 0.00 42.89 4.02
2878 2920 0.472352 AAGGTAACCGGGACTGGTCA 60.472 55.000 6.32 0.00 42.89 4.02
2879 2921 0.252558 AGGTAACCGGGACTGGTCAT 60.253 55.000 6.32 0.00 42.89 3.06
2880 2922 0.107848 GGTAACCGGGACTGGTCATG 60.108 60.000 6.32 0.00 42.89 3.07
2881 2923 0.743345 GTAACCGGGACTGGTCATGC 60.743 60.000 6.32 0.00 42.89 4.06
2882 2924 1.906105 TAACCGGGACTGGTCATGCC 61.906 60.000 6.32 0.00 42.89 4.40
2883 2925 3.716195 CCGGGACTGGTCATGCCA 61.716 66.667 8.33 8.33 46.95 4.92
2903 2945 3.975992 GCGTGGTGCACTAATTCTG 57.024 52.632 17.98 0.21 45.45 3.02
2904 2946 1.438651 GCGTGGTGCACTAATTCTGA 58.561 50.000 17.98 0.00 45.45 3.27
2905 2947 1.804151 GCGTGGTGCACTAATTCTGAA 59.196 47.619 17.98 0.00 45.45 3.02
2906 2948 2.420022 GCGTGGTGCACTAATTCTGAAT 59.580 45.455 17.98 0.00 45.45 2.57
2907 2949 3.119849 GCGTGGTGCACTAATTCTGAATT 60.120 43.478 17.98 18.64 45.45 2.17
2908 2950 4.094294 GCGTGGTGCACTAATTCTGAATTA 59.906 41.667 17.98 18.85 45.45 1.40
2909 2951 5.560148 CGTGGTGCACTAATTCTGAATTAC 58.440 41.667 17.98 10.53 32.38 1.89
2910 2952 5.351465 CGTGGTGCACTAATTCTGAATTACT 59.649 40.000 17.98 7.42 32.38 2.24
2911 2953 6.128282 CGTGGTGCACTAATTCTGAATTACTT 60.128 38.462 17.98 6.30 32.38 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 0.510359 CGAGCGGCATCTTGAATAGC 59.490 55.000 1.45 0.00 0.00 2.97
224 225 4.675510 GCATGATGTGGTCAACTATTTGG 58.324 43.478 0.00 0.00 40.97 3.28
933 938 7.988028 ACTTCAGGGTTTATAGCTTAGATCAAC 59.012 37.037 0.00 0.00 0.00 3.18
1325 1339 5.148651 ACAGGTAAGGTATCACAGTTGTC 57.851 43.478 0.00 0.00 0.00 3.18
1557 1579 4.408921 TCGTCCATATTGACTCCAGGAATT 59.591 41.667 5.49 0.00 32.97 2.17
1577 1599 2.163818 TGCCAACGAGAAATCTTCGT 57.836 45.000 0.00 0.00 42.20 3.85
1590 1612 0.736053 TCGGAACACAACTTGCCAAC 59.264 50.000 0.00 0.00 0.00 3.77
1639 1661 0.968405 GGGCAAAAGCCAGTGATGAA 59.032 50.000 8.94 0.00 0.00 2.57
1852 1874 7.940850 TCAAGAACCTTAAACTTGATCTTTGG 58.059 34.615 0.00 0.00 42.91 3.28
1981 2006 5.007682 GGAGGGAGTAGTAGAGATGTCATC 58.992 50.000 4.52 4.52 0.00 2.92
2049 2074 0.904649 TACTCCCTCCGACGTGTCTA 59.095 55.000 0.00 0.00 0.00 2.59
2050 2075 0.255318 ATACTCCCTCCGACGTGTCT 59.745 55.000 0.00 0.00 0.00 3.41
2219 2261 2.755655 CCAAGGAGACATCACTACGACT 59.244 50.000 0.00 0.00 0.00 4.18
2220 2262 2.735762 GCCAAGGAGACATCACTACGAC 60.736 54.545 0.00 0.00 0.00 4.34
2221 2263 1.476891 GCCAAGGAGACATCACTACGA 59.523 52.381 0.00 0.00 0.00 3.43
2222 2264 1.204704 TGCCAAGGAGACATCACTACG 59.795 52.381 0.00 0.00 0.00 3.51
2223 2265 2.234908 ACTGCCAAGGAGACATCACTAC 59.765 50.000 0.00 0.00 0.00 2.73
2224 2266 2.234661 CACTGCCAAGGAGACATCACTA 59.765 50.000 0.00 0.00 0.00 2.74
2225 2267 1.002888 CACTGCCAAGGAGACATCACT 59.997 52.381 0.00 0.00 0.00 3.41
2226 2268 1.271054 ACACTGCCAAGGAGACATCAC 60.271 52.381 0.00 0.00 0.00 3.06
2227 2269 1.059098 ACACTGCCAAGGAGACATCA 58.941 50.000 0.00 0.00 0.00 3.07
2228 2270 1.446907 CACACTGCCAAGGAGACATC 58.553 55.000 0.00 0.00 0.00 3.06
2229 2271 0.607489 GCACACTGCCAAGGAGACAT 60.607 55.000 0.00 0.00 37.42 3.06
2230 2272 1.227943 GCACACTGCCAAGGAGACA 60.228 57.895 0.00 0.00 37.42 3.41
2231 2273 2.320587 CGCACACTGCCAAGGAGAC 61.321 63.158 0.00 0.00 41.12 3.36
2232 2274 2.031012 CGCACACTGCCAAGGAGA 59.969 61.111 0.00 0.00 41.12 3.71
2233 2275 2.281070 ACGCACACTGCCAAGGAG 60.281 61.111 0.00 0.00 41.12 3.69
2234 2276 2.280797 GACGCACACTGCCAAGGA 60.281 61.111 0.00 0.00 41.12 3.36
2235 2277 3.716006 CGACGCACACTGCCAAGG 61.716 66.667 0.00 0.00 41.12 3.61
2236 2278 3.716006 CCGACGCACACTGCCAAG 61.716 66.667 0.00 0.00 41.12 3.61
2297 2339 6.265649 ACATAGTCATCGAGGCTATTACTTGT 59.734 38.462 10.07 5.57 42.41 3.16
2298 2340 6.682746 ACATAGTCATCGAGGCTATTACTTG 58.317 40.000 10.07 5.10 42.41 3.16
2299 2341 6.902771 ACATAGTCATCGAGGCTATTACTT 57.097 37.500 10.07 0.00 42.41 2.24
2306 2348 1.759445 AGCAACATAGTCATCGAGGCT 59.241 47.619 0.00 0.00 35.44 4.58
2307 2349 2.231215 AGCAACATAGTCATCGAGGC 57.769 50.000 0.00 0.00 0.00 4.70
2323 2365 4.080919 ACAGAACATAAGCCACTCATAGCA 60.081 41.667 0.00 0.00 0.00 3.49
2335 2377 5.393461 GGCATTCCTCCAAACAGAACATAAG 60.393 44.000 0.00 0.00 0.00 1.73
2336 2378 4.462483 GGCATTCCTCCAAACAGAACATAA 59.538 41.667 0.00 0.00 0.00 1.90
2394 2436 0.674895 GGCACATAGGATCCCGATGC 60.675 60.000 19.62 17.79 39.67 3.91
2400 2442 1.371558 GGTCGGGCACATAGGATCC 59.628 63.158 2.48 2.48 0.00 3.36
2504 2546 1.514678 AAGCAACGCTTCGCAATCCA 61.515 50.000 0.00 0.00 46.77 3.41
2526 2568 2.693267 AATAGGGTTGGCGAAGAGTC 57.307 50.000 0.00 0.00 0.00 3.36
2541 2583 6.403636 CCTGTCCGAAGATCCAACAAAAATAG 60.404 42.308 0.00 0.00 0.00 1.73
2543 2585 4.218417 CCTGTCCGAAGATCCAACAAAAAT 59.782 41.667 0.00 0.00 0.00 1.82
2641 2683 3.713826 TTGATGACCCCTACTGGAAAC 57.286 47.619 0.00 0.00 35.39 2.78
2668 2710 5.180868 AGTCTACACGACAAAACGAGAGTAT 59.819 40.000 0.00 0.00 44.85 2.12
2676 2718 2.470257 CCACGAGTCTACACGACAAAAC 59.530 50.000 6.94 0.00 45.32 2.43
2682 2724 1.577922 GTGCCACGAGTCTACACGA 59.422 57.895 6.94 0.00 34.17 4.35
2718 2760 4.592942 AGGGTAGTCGTAGTCACACATAA 58.407 43.478 0.00 0.00 0.00 1.90
2719 2761 4.226427 AGGGTAGTCGTAGTCACACATA 57.774 45.455 0.00 0.00 0.00 2.29
2720 2762 3.083122 AGGGTAGTCGTAGTCACACAT 57.917 47.619 0.00 0.00 0.00 3.21
2721 2763 2.574006 AGGGTAGTCGTAGTCACACA 57.426 50.000 0.00 0.00 0.00 3.72
2722 2764 2.941720 CCTAGGGTAGTCGTAGTCACAC 59.058 54.545 0.00 0.00 33.32 3.82
2723 2765 2.092753 CCCTAGGGTAGTCGTAGTCACA 60.093 54.545 20.88 0.00 33.32 3.58
2724 2766 2.570135 CCCTAGGGTAGTCGTAGTCAC 58.430 57.143 20.88 0.00 33.32 3.67
2737 2779 0.991920 ACCAACACATGACCCTAGGG 59.008 55.000 27.36 27.36 42.03 3.53
2738 2780 2.224769 ACAACCAACACATGACCCTAGG 60.225 50.000 0.06 0.06 0.00 3.02
2739 2781 3.140325 ACAACCAACACATGACCCTAG 57.860 47.619 0.00 0.00 0.00 3.02
2740 2782 3.117851 TGAACAACCAACACATGACCCTA 60.118 43.478 0.00 0.00 0.00 3.53
2741 2783 2.306847 GAACAACCAACACATGACCCT 58.693 47.619 0.00 0.00 0.00 4.34
2742 2784 2.028130 TGAACAACCAACACATGACCC 58.972 47.619 0.00 0.00 0.00 4.46
2743 2785 3.791973 TTGAACAACCAACACATGACC 57.208 42.857 0.00 0.00 0.00 4.02
2744 2786 4.111916 CCTTTGAACAACCAACACATGAC 58.888 43.478 0.00 0.00 0.00 3.06
2745 2787 3.766591 ACCTTTGAACAACCAACACATGA 59.233 39.130 0.00 0.00 0.00 3.07
2746 2788 4.122143 ACCTTTGAACAACCAACACATG 57.878 40.909 0.00 0.00 0.00 3.21
2747 2789 4.817318 AACCTTTGAACAACCAACACAT 57.183 36.364 0.00 0.00 0.00 3.21
2748 2790 4.310769 CAAACCTTTGAACAACCAACACA 58.689 39.130 0.00 0.00 40.55 3.72
2749 2791 3.682377 CCAAACCTTTGAACAACCAACAC 59.318 43.478 0.00 0.00 40.55 3.32
2750 2792 3.325135 ACCAAACCTTTGAACAACCAACA 59.675 39.130 0.00 0.00 40.55 3.33
2751 2793 3.932822 ACCAAACCTTTGAACAACCAAC 58.067 40.909 0.00 0.00 40.55 3.77
2752 2794 4.625607 AACCAAACCTTTGAACAACCAA 57.374 36.364 0.00 0.00 40.55 3.67
2753 2795 4.319177 CAAACCAAACCTTTGAACAACCA 58.681 39.130 0.00 0.00 40.55 3.67
2754 2796 3.687212 CCAAACCAAACCTTTGAACAACC 59.313 43.478 0.00 0.00 40.55 3.77
2755 2797 4.320023 ACCAAACCAAACCTTTGAACAAC 58.680 39.130 0.00 0.00 40.55 3.32
2756 2798 4.625607 ACCAAACCAAACCTTTGAACAA 57.374 36.364 0.00 0.00 40.55 2.83
2757 2799 4.625607 AACCAAACCAAACCTTTGAACA 57.374 36.364 0.00 0.00 40.55 3.18
2758 2800 5.480205 TGTAACCAAACCAAACCTTTGAAC 58.520 37.500 0.00 0.00 40.55 3.18
2759 2801 5.740290 TGTAACCAAACCAAACCTTTGAA 57.260 34.783 0.00 0.00 40.55 2.69
2760 2802 5.187967 ACATGTAACCAAACCAAACCTTTGA 59.812 36.000 0.00 0.00 40.55 2.69
2761 2803 5.423886 ACATGTAACCAAACCAAACCTTTG 58.576 37.500 0.00 0.00 37.90 2.77
2762 2804 5.187967 TGACATGTAACCAAACCAAACCTTT 59.812 36.000 0.00 0.00 0.00 3.11
2763 2805 4.712337 TGACATGTAACCAAACCAAACCTT 59.288 37.500 0.00 0.00 0.00 3.50
2764 2806 4.282496 TGACATGTAACCAAACCAAACCT 58.718 39.130 0.00 0.00 0.00 3.50
2765 2807 4.098807 ACTGACATGTAACCAAACCAAACC 59.901 41.667 0.00 0.00 0.00 3.27
2766 2808 5.257082 ACTGACATGTAACCAAACCAAAC 57.743 39.130 0.00 0.00 0.00 2.93
2767 2809 5.394663 CCAACTGACATGTAACCAAACCAAA 60.395 40.000 0.00 0.00 0.00 3.28
2768 2810 4.098654 CCAACTGACATGTAACCAAACCAA 59.901 41.667 0.00 0.00 0.00 3.67
2769 2811 3.634448 CCAACTGACATGTAACCAAACCA 59.366 43.478 0.00 0.00 0.00 3.67
2770 2812 3.886505 TCCAACTGACATGTAACCAAACC 59.113 43.478 0.00 0.00 0.00 3.27
2771 2813 4.578928 ACTCCAACTGACATGTAACCAAAC 59.421 41.667 0.00 0.00 0.00 2.93
2772 2814 4.787551 ACTCCAACTGACATGTAACCAAA 58.212 39.130 0.00 0.00 0.00 3.28
2773 2815 4.431416 ACTCCAACTGACATGTAACCAA 57.569 40.909 0.00 0.00 0.00 3.67
2774 2816 4.133820 CAACTCCAACTGACATGTAACCA 58.866 43.478 0.00 0.00 0.00 3.67
2775 2817 4.024048 CACAACTCCAACTGACATGTAACC 60.024 45.833 0.00 0.00 0.00 2.85
2776 2818 4.574828 ACACAACTCCAACTGACATGTAAC 59.425 41.667 0.00 0.00 0.00 2.50
2777 2819 4.776349 ACACAACTCCAACTGACATGTAA 58.224 39.130 0.00 0.00 0.00 2.41
2778 2820 4.415881 ACACAACTCCAACTGACATGTA 57.584 40.909 0.00 0.00 0.00 2.29
2779 2821 3.281727 ACACAACTCCAACTGACATGT 57.718 42.857 0.00 0.00 0.00 3.21
2780 2822 3.627123 TCAACACAACTCCAACTGACATG 59.373 43.478 0.00 0.00 0.00 3.21
2781 2823 3.879295 CTCAACACAACTCCAACTGACAT 59.121 43.478 0.00 0.00 0.00 3.06
2782 2824 3.270027 CTCAACACAACTCCAACTGACA 58.730 45.455 0.00 0.00 0.00 3.58
2783 2825 2.032178 GCTCAACACAACTCCAACTGAC 59.968 50.000 0.00 0.00 0.00 3.51
2784 2826 2.288666 GCTCAACACAACTCCAACTGA 58.711 47.619 0.00 0.00 0.00 3.41
2785 2827 2.016318 TGCTCAACACAACTCCAACTG 58.984 47.619 0.00 0.00 0.00 3.16
2786 2828 2.418368 TGCTCAACACAACTCCAACT 57.582 45.000 0.00 0.00 0.00 3.16
2787 2829 2.618241 TCATGCTCAACACAACTCCAAC 59.382 45.455 0.00 0.00 0.00 3.77
2788 2830 2.929641 TCATGCTCAACACAACTCCAA 58.070 42.857 0.00 0.00 0.00 3.53
2789 2831 2.636647 TCATGCTCAACACAACTCCA 57.363 45.000 0.00 0.00 0.00 3.86
2790 2832 3.254166 ACAATCATGCTCAACACAACTCC 59.746 43.478 0.00 0.00 0.00 3.85
2791 2833 4.494350 ACAATCATGCTCAACACAACTC 57.506 40.909 0.00 0.00 0.00 3.01
2792 2834 7.553760 TCATATACAATCATGCTCAACACAACT 59.446 33.333 0.00 0.00 0.00 3.16
2793 2835 7.696755 TCATATACAATCATGCTCAACACAAC 58.303 34.615 0.00 0.00 0.00 3.32
2794 2836 7.012610 CCTCATATACAATCATGCTCAACACAA 59.987 37.037 0.00 0.00 0.00 3.33
2795 2837 6.484308 CCTCATATACAATCATGCTCAACACA 59.516 38.462 0.00 0.00 0.00 3.72
2796 2838 6.072838 CCCTCATATACAATCATGCTCAACAC 60.073 42.308 0.00 0.00 0.00 3.32
2797 2839 5.999600 CCCTCATATACAATCATGCTCAACA 59.000 40.000 0.00 0.00 0.00 3.33
2798 2840 5.413833 CCCCTCATATACAATCATGCTCAAC 59.586 44.000 0.00 0.00 0.00 3.18
2799 2841 5.515359 CCCCCTCATATACAATCATGCTCAA 60.515 44.000 0.00 0.00 0.00 3.02
2800 2842 4.019051 CCCCCTCATATACAATCATGCTCA 60.019 45.833 0.00 0.00 0.00 4.26
2801 2843 4.225942 TCCCCCTCATATACAATCATGCTC 59.774 45.833 0.00 0.00 0.00 4.26
2802 2844 4.178339 TCCCCCTCATATACAATCATGCT 58.822 43.478 0.00 0.00 0.00 3.79
2803 2845 4.574674 TCCCCCTCATATACAATCATGC 57.425 45.455 0.00 0.00 0.00 4.06
2804 2846 5.884232 CACATCCCCCTCATATACAATCATG 59.116 44.000 0.00 0.00 0.00 3.07
2805 2847 5.553162 ACACATCCCCCTCATATACAATCAT 59.447 40.000 0.00 0.00 0.00 2.45
2806 2848 4.913355 ACACATCCCCCTCATATACAATCA 59.087 41.667 0.00 0.00 0.00 2.57
2807 2849 5.505181 ACACATCCCCCTCATATACAATC 57.495 43.478 0.00 0.00 0.00 2.67
2808 2850 5.930209 AACACATCCCCCTCATATACAAT 57.070 39.130 0.00 0.00 0.00 2.71
2809 2851 5.044476 ACAAACACATCCCCCTCATATACAA 60.044 40.000 0.00 0.00 0.00 2.41
2810 2852 4.476846 ACAAACACATCCCCCTCATATACA 59.523 41.667 0.00 0.00 0.00 2.29
2811 2853 4.821805 CACAAACACATCCCCCTCATATAC 59.178 45.833 0.00 0.00 0.00 1.47
2812 2854 4.724293 TCACAAACACATCCCCCTCATATA 59.276 41.667 0.00 0.00 0.00 0.86
2813 2855 3.527253 TCACAAACACATCCCCCTCATAT 59.473 43.478 0.00 0.00 0.00 1.78
2814 2856 2.916269 TCACAAACACATCCCCCTCATA 59.084 45.455 0.00 0.00 0.00 2.15
2815 2857 1.710244 TCACAAACACATCCCCCTCAT 59.290 47.619 0.00 0.00 0.00 2.90
2816 2858 1.144691 TCACAAACACATCCCCCTCA 58.855 50.000 0.00 0.00 0.00 3.86
2817 2859 2.514458 ATCACAAACACATCCCCCTC 57.486 50.000 0.00 0.00 0.00 4.30
2818 2860 2.999185 AATCACAAACACATCCCCCT 57.001 45.000 0.00 0.00 0.00 4.79
2819 2861 3.306710 GGAAAATCACAAACACATCCCCC 60.307 47.826 0.00 0.00 0.00 5.40
2820 2862 3.323403 TGGAAAATCACAAACACATCCCC 59.677 43.478 0.00 0.00 0.00 4.81
2821 2863 4.559153 CTGGAAAATCACAAACACATCCC 58.441 43.478 0.00 0.00 0.00 3.85
2822 2864 4.280677 TCCTGGAAAATCACAAACACATCC 59.719 41.667 0.00 0.00 0.00 3.51
2823 2865 5.452078 TCCTGGAAAATCACAAACACATC 57.548 39.130 0.00 0.00 0.00 3.06
2824 2866 5.335897 CGATCCTGGAAAATCACAAACACAT 60.336 40.000 0.00 0.00 0.00 3.21
2825 2867 4.023279 CGATCCTGGAAAATCACAAACACA 60.023 41.667 0.00 0.00 0.00 3.72
2826 2868 4.475944 CGATCCTGGAAAATCACAAACAC 58.524 43.478 0.00 0.00 0.00 3.32
2827 2869 3.057596 GCGATCCTGGAAAATCACAAACA 60.058 43.478 0.00 0.00 0.00 2.83
2828 2870 3.191371 AGCGATCCTGGAAAATCACAAAC 59.809 43.478 0.00 0.00 0.00 2.93
2829 2871 3.191162 CAGCGATCCTGGAAAATCACAAA 59.809 43.478 0.00 0.00 37.93 2.83
2830 2872 2.749076 CAGCGATCCTGGAAAATCACAA 59.251 45.455 0.00 0.00 37.93 3.33
2831 2873 2.358957 CAGCGATCCTGGAAAATCACA 58.641 47.619 0.00 0.00 37.93 3.58
2841 2883 1.466167 CTTCAACAACCAGCGATCCTG 59.534 52.381 4.67 4.67 41.41 3.86
2842 2884 1.611673 CCTTCAACAACCAGCGATCCT 60.612 52.381 0.00 0.00 0.00 3.24
2843 2885 0.804989 CCTTCAACAACCAGCGATCC 59.195 55.000 0.00 0.00 0.00 3.36
2844 2886 1.523758 ACCTTCAACAACCAGCGATC 58.476 50.000 0.00 0.00 0.00 3.69
2845 2887 2.812011 GTTACCTTCAACAACCAGCGAT 59.188 45.455 0.00 0.00 0.00 4.58
2846 2888 2.215196 GTTACCTTCAACAACCAGCGA 58.785 47.619 0.00 0.00 0.00 4.93
2847 2889 1.265905 GGTTACCTTCAACAACCAGCG 59.734 52.381 0.00 0.00 41.17 5.18
2848 2890 1.265905 CGGTTACCTTCAACAACCAGC 59.734 52.381 0.00 0.00 41.52 4.85
2849 2891 1.877443 CCGGTTACCTTCAACAACCAG 59.123 52.381 0.00 0.00 41.52 4.00
2850 2892 1.477195 CCCGGTTACCTTCAACAACCA 60.477 52.381 0.00 0.00 41.52 3.67
2851 2893 1.202794 TCCCGGTTACCTTCAACAACC 60.203 52.381 0.00 0.00 38.68 3.77
2852 2894 1.875514 GTCCCGGTTACCTTCAACAAC 59.124 52.381 0.00 0.00 0.00 3.32
2853 2895 1.770061 AGTCCCGGTTACCTTCAACAA 59.230 47.619 0.00 0.00 0.00 2.83
2854 2896 1.071071 CAGTCCCGGTTACCTTCAACA 59.929 52.381 0.00 0.00 0.00 3.33
2855 2897 1.609841 CCAGTCCCGGTTACCTTCAAC 60.610 57.143 0.00 0.00 0.00 3.18
2856 2898 0.688487 CCAGTCCCGGTTACCTTCAA 59.312 55.000 0.00 0.00 0.00 2.69
2857 2899 0.472352 ACCAGTCCCGGTTACCTTCA 60.472 55.000 0.00 0.00 34.91 3.02
2858 2900 0.248565 GACCAGTCCCGGTTACCTTC 59.751 60.000 0.00 0.00 40.22 3.46
2859 2901 0.472352 TGACCAGTCCCGGTTACCTT 60.472 55.000 0.00 0.00 40.22 3.50
2860 2902 0.252558 ATGACCAGTCCCGGTTACCT 60.253 55.000 0.00 0.00 40.22 3.08
2861 2903 0.107848 CATGACCAGTCCCGGTTACC 60.108 60.000 0.00 0.00 40.22 2.85
2862 2904 0.743345 GCATGACCAGTCCCGGTTAC 60.743 60.000 0.00 0.00 40.22 2.50
2863 2905 1.600107 GCATGACCAGTCCCGGTTA 59.400 57.895 0.00 0.00 40.22 2.85
2864 2906 2.351276 GCATGACCAGTCCCGGTT 59.649 61.111 0.00 0.00 40.22 4.44
2865 2907 3.717294 GGCATGACCAGTCCCGGT 61.717 66.667 0.00 0.00 43.91 5.28
2866 2908 3.716195 TGGCATGACCAGTCCCGG 61.716 66.667 0.00 0.00 46.36 5.73
2882 2924 9.474968 TAATTCAGAATTAGTGCACCACGCATG 62.475 40.741 14.63 6.77 41.63 4.06
2883 2925 7.571786 TAATTCAGAATTAGTGCACCACGCAT 61.572 38.462 14.63 0.00 41.63 4.73
2884 2926 6.314738 TAATTCAGAATTAGTGCACCACGCA 61.315 40.000 14.63 0.00 39.25 5.24
2885 2927 1.438651 TCAGAATTAGTGCACCACGC 58.561 50.000 14.63 0.00 39.64 5.34
2886 2928 4.685169 AATTCAGAATTAGTGCACCACG 57.315 40.909 14.63 0.00 39.64 4.94
2887 2929 6.743575 AGTAATTCAGAATTAGTGCACCAC 57.256 37.500 18.79 7.50 36.05 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.