Multiple sequence alignment - TraesCS2D01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G132500 chr2D 100.000 3320 0 0 1 3320 77221897 77225216 0.000000e+00 6131.0
1 TraesCS2D01G132500 chr2D 89.970 329 32 1 1 328 8639637 8639965 1.100000e-114 424.0
2 TraesCS2D01G132500 chr2D 97.531 243 6 0 3043 3285 541547531 541547289 1.840000e-112 416.0
3 TraesCS2D01G132500 chr2D 95.868 242 10 0 3044 3285 6521170 6521411 3.100000e-105 392.0
4 TraesCS2D01G132500 chr2B 92.132 2707 124 33 329 2991 119241984 119244645 0.000000e+00 3736.0
5 TraesCS2D01G132500 chr2B 87.234 94 8 4 2851 2943 780866436 780866346 1.630000e-18 104.0
6 TraesCS2D01G132500 chr2A 92.915 2343 94 30 329 2634 78600979 78598672 0.000000e+00 3341.0
7 TraesCS2D01G132500 chr5D 90.769 325 29 1 1 324 487589543 487589867 1.830000e-117 433.0
8 TraesCS2D01G132500 chr5D 95.885 243 10 0 3043 3285 517842541 517842299 8.630000e-106 394.0
9 TraesCS2D01G132500 chr3A 90.769 325 29 1 1 324 123047161 123046837 1.830000e-117 433.0
10 TraesCS2D01G132500 chr3A 95.142 247 11 1 3043 3289 309063560 309063805 4.020000e-104 388.0
11 TraesCS2D01G132500 chr3D 90.462 325 30 1 1 324 420047839 420048163 8.510000e-116 427.0
12 TraesCS2D01G132500 chr3D 95.492 244 11 0 3044 3287 532558113 532557870 1.120000e-104 390.0
13 TraesCS2D01G132500 chr1D 90.154 325 31 1 1 324 469095989 469095665 3.960000e-114 422.0
14 TraesCS2D01G132500 chr1D 89.846 325 32 1 1 324 433908033 433907709 1.840000e-112 416.0
15 TraesCS2D01G132500 chr1D 96.311 244 9 0 3042 3285 448103380 448103137 5.160000e-108 401.0
16 TraesCS2D01G132500 chr1A 89.970 329 30 3 1 326 507912135 507911807 3.960000e-114 422.0
17 TraesCS2D01G132500 chr7D 89.908 327 31 2 1 326 565207751 565207426 1.420000e-113 420.0
18 TraesCS2D01G132500 chr5A 89.908 327 32 1 1 326 580928118 580927792 1.420000e-113 420.0
19 TraesCS2D01G132500 chr4D 96.341 246 9 0 3041 3286 24775607 24775852 3.990000e-109 405.0
20 TraesCS2D01G132500 chr4D 95.868 242 10 0 3044 3285 471782421 471782180 3.100000e-105 392.0
21 TraesCS2D01G132500 chr4A 95.294 255 10 2 3043 3297 615435274 615435022 1.430000e-108 403.0
22 TraesCS2D01G132500 chr1B 80.723 83 12 4 2844 2924 367743977 367743897 9.950000e-06 62.1
23 TraesCS2D01G132500 chr7A 85.714 56 8 0 1848 1903 589238237 589238182 3.580000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G132500 chr2D 77221897 77225216 3319 False 6131 6131 100.000 1 3320 1 chr2D.!!$F3 3319
1 TraesCS2D01G132500 chr2B 119241984 119244645 2661 False 3736 3736 92.132 329 2991 1 chr2B.!!$F1 2662
2 TraesCS2D01G132500 chr2A 78598672 78600979 2307 True 3341 3341 92.915 329 2634 1 chr2A.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.0 0.0 0.0 0.00 3.82 F
140 141 0.105593 CTGTATGAGACATGGCCGCT 59.894 55.0 0.0 0.0 37.45 5.52 F
141 142 0.179076 TGTATGAGACATGGCCGCTG 60.179 55.0 0.0 0.0 31.20 5.18 F
209 210 0.248215 GAAATGAGTCGGCGCATTGG 60.248 55.0 19.7 0.0 42.77 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1736 0.036010 CCTTGGTCTGCGACAGGAAT 60.036 55.000 10.14 0.00 30.26 3.01 R
1878 1928 3.365265 GGCACCACCTTCTTGCCG 61.365 66.667 0.00 0.00 46.11 5.69 R
1938 1988 4.057428 GAGTCGAGCACCGTGCCT 62.057 66.667 19.96 9.69 46.52 4.75 R
2321 2371 2.079925 GCAGAGGGATAATCAATCGGC 58.920 52.381 0.00 0.00 35.21 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.884668 TCGAACTCAAGTCCCACTATTT 57.115 40.909 0.00 0.00 0.00 1.40
22 23 5.223449 TCGAACTCAAGTCCCACTATTTT 57.777 39.130 0.00 0.00 0.00 1.82
23 24 5.617252 TCGAACTCAAGTCCCACTATTTTT 58.383 37.500 0.00 0.00 0.00 1.94
39 40 1.937278 TTTTTGTGTGCTGGCATGTG 58.063 45.000 0.00 0.00 0.00 3.21
40 41 0.822811 TTTTGTGTGCTGGCATGTGT 59.177 45.000 0.00 0.00 0.00 3.72
41 42 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
76 77 2.177531 GCGCCAGCATGAACTGTG 59.822 61.111 0.00 0.00 44.35 3.66
77 78 2.872557 CGCCAGCATGAACTGTGG 59.127 61.111 0.00 0.00 39.69 4.17
78 79 1.968017 CGCCAGCATGAACTGTGGT 60.968 57.895 0.00 0.00 39.69 4.16
79 80 0.673333 CGCCAGCATGAACTGTGGTA 60.673 55.000 0.00 0.00 39.69 3.25
80 81 1.755179 GCCAGCATGAACTGTGGTAT 58.245 50.000 0.00 0.00 39.69 2.73
81 82 2.094675 GCCAGCATGAACTGTGGTATT 58.905 47.619 0.00 0.00 39.69 1.89
82 83 2.493278 GCCAGCATGAACTGTGGTATTT 59.507 45.455 0.00 0.00 39.69 1.40
83 84 3.056607 GCCAGCATGAACTGTGGTATTTT 60.057 43.478 0.00 0.00 39.69 1.82
84 85 4.737054 CCAGCATGAACTGTGGTATTTTC 58.263 43.478 0.00 0.00 39.69 2.29
85 86 4.460382 CCAGCATGAACTGTGGTATTTTCT 59.540 41.667 0.00 0.00 39.69 2.52
86 87 5.396484 CAGCATGAACTGTGGTATTTTCTG 58.604 41.667 0.00 0.00 39.69 3.02
87 88 5.181811 CAGCATGAACTGTGGTATTTTCTGA 59.818 40.000 0.00 0.00 39.69 3.27
88 89 5.769662 AGCATGAACTGTGGTATTTTCTGAA 59.230 36.000 0.00 0.00 0.00 3.02
89 90 6.072286 AGCATGAACTGTGGTATTTTCTGAAG 60.072 38.462 0.00 0.00 0.00 3.02
90 91 5.689383 TGAACTGTGGTATTTTCTGAAGC 57.311 39.130 0.00 0.00 0.00 3.86
91 92 4.518970 TGAACTGTGGTATTTTCTGAAGCC 59.481 41.667 0.00 0.00 0.00 4.35
92 93 3.074412 ACTGTGGTATTTTCTGAAGCCG 58.926 45.455 0.00 0.00 0.00 5.52
93 94 2.420022 CTGTGGTATTTTCTGAAGCCGG 59.580 50.000 0.00 0.00 0.00 6.13
94 95 1.132453 GTGGTATTTTCTGAAGCCGGC 59.868 52.381 21.89 21.89 0.00 6.13
95 96 1.271652 TGGTATTTTCTGAAGCCGGCA 60.272 47.619 31.54 7.07 0.00 5.69
96 97 2.024414 GGTATTTTCTGAAGCCGGCAT 58.976 47.619 31.54 19.26 0.00 4.40
97 98 2.427095 GGTATTTTCTGAAGCCGGCATT 59.573 45.455 31.54 19.82 0.00 3.56
98 99 2.660189 ATTTTCTGAAGCCGGCATTG 57.340 45.000 31.54 15.57 0.00 2.82
99 100 1.327303 TTTTCTGAAGCCGGCATTGT 58.673 45.000 31.54 10.83 0.00 2.71
100 101 2.192664 TTTCTGAAGCCGGCATTGTA 57.807 45.000 31.54 8.10 0.00 2.41
101 102 2.418368 TTCTGAAGCCGGCATTGTAT 57.582 45.000 31.54 2.66 0.00 2.29
102 103 1.667236 TCTGAAGCCGGCATTGTATG 58.333 50.000 31.54 11.61 0.00 2.39
111 112 2.328989 CATTGTATGCCGGCGCTG 59.671 61.111 23.90 9.96 35.36 5.18
112 113 2.901840 ATTGTATGCCGGCGCTGG 60.902 61.111 31.57 31.57 35.36 4.85
132 133 2.842457 GCATGATGCCTGTATGAGACA 58.158 47.619 6.04 0.00 37.42 3.41
133 134 3.409570 GCATGATGCCTGTATGAGACAT 58.590 45.455 6.04 0.00 37.42 3.06
134 135 3.188667 GCATGATGCCTGTATGAGACATG 59.811 47.826 6.04 0.00 37.42 3.21
135 136 3.480505 TGATGCCTGTATGAGACATGG 57.519 47.619 0.00 0.00 37.45 3.66
136 137 2.149578 GATGCCTGTATGAGACATGGC 58.850 52.381 11.86 11.86 45.37 4.40
137 138 0.181114 TGCCTGTATGAGACATGGCC 59.819 55.000 14.78 0.00 44.94 5.36
138 139 0.882042 GCCTGTATGAGACATGGCCG 60.882 60.000 8.76 0.00 42.20 6.13
139 140 0.882042 CCTGTATGAGACATGGCCGC 60.882 60.000 0.00 0.00 37.45 6.53
140 141 0.105593 CTGTATGAGACATGGCCGCT 59.894 55.000 0.00 0.00 37.45 5.52
141 142 0.179076 TGTATGAGACATGGCCGCTG 60.179 55.000 0.00 0.00 31.20 5.18
142 143 0.882042 GTATGAGACATGGCCGCTGG 60.882 60.000 9.69 0.00 0.00 4.85
153 154 2.202919 CCGCTGGCATGATCGACA 60.203 61.111 0.00 0.00 0.00 4.35
154 155 2.242572 CCGCTGGCATGATCGACAG 61.243 63.158 0.00 0.00 45.54 3.51
156 157 3.316821 CTGGCATGATCGACAGCG 58.683 61.111 0.00 0.00 34.61 5.18
157 158 2.202919 TGGCATGATCGACAGCGG 60.203 61.111 0.00 0.00 38.28 5.52
158 159 2.969238 GGCATGATCGACAGCGGG 60.969 66.667 0.00 0.00 38.28 6.13
159 160 3.643978 GCATGATCGACAGCGGGC 61.644 66.667 0.00 0.00 38.28 6.13
160 161 2.107750 CATGATCGACAGCGGGCT 59.892 61.111 0.00 0.00 38.28 5.19
161 162 1.522355 CATGATCGACAGCGGGCTT 60.522 57.895 0.00 0.00 38.28 4.35
162 163 1.091771 CATGATCGACAGCGGGCTTT 61.092 55.000 0.00 0.00 38.28 3.51
163 164 0.392998 ATGATCGACAGCGGGCTTTT 60.393 50.000 0.00 0.00 38.28 2.27
164 165 0.605319 TGATCGACAGCGGGCTTTTT 60.605 50.000 0.00 0.00 38.28 1.94
205 206 4.615901 ATGAAATGAGTCGGCGCA 57.384 50.000 10.83 0.00 0.00 6.09
206 207 3.085208 ATGAAATGAGTCGGCGCAT 57.915 47.368 10.83 0.00 36.70 4.73
207 208 1.382522 ATGAAATGAGTCGGCGCATT 58.617 45.000 13.47 13.47 44.88 3.56
208 209 0.447406 TGAAATGAGTCGGCGCATTG 59.553 50.000 19.70 0.00 42.77 2.82
209 210 0.248215 GAAATGAGTCGGCGCATTGG 60.248 55.000 19.70 0.00 42.77 3.16
210 211 1.656818 AAATGAGTCGGCGCATTGGG 61.657 55.000 19.70 0.00 42.77 4.12
227 228 4.474530 GCGCATTGCCGATTCAAA 57.525 50.000 0.30 0.00 37.76 2.69
228 229 2.962089 GCGCATTGCCGATTCAAAT 58.038 47.368 0.30 0.00 37.76 2.32
229 230 2.118228 GCGCATTGCCGATTCAAATA 57.882 45.000 0.30 0.00 37.76 1.40
230 231 1.780860 GCGCATTGCCGATTCAAATAC 59.219 47.619 0.30 0.00 37.76 1.89
231 232 2.794282 GCGCATTGCCGATTCAAATACA 60.794 45.455 0.30 0.00 37.76 2.29
232 233 3.433709 CGCATTGCCGATTCAAATACAA 58.566 40.909 2.41 0.00 0.00 2.41
233 234 3.856521 CGCATTGCCGATTCAAATACAAA 59.143 39.130 2.41 0.00 0.00 2.83
234 235 4.325741 CGCATTGCCGATTCAAATACAAAA 59.674 37.500 2.41 0.00 0.00 2.44
235 236 5.550070 GCATTGCCGATTCAAATACAAAAC 58.450 37.500 0.00 0.00 0.00 2.43
236 237 5.348451 GCATTGCCGATTCAAATACAAAACT 59.652 36.000 0.00 0.00 0.00 2.66
237 238 6.670452 GCATTGCCGATTCAAATACAAAACTG 60.670 38.462 0.00 0.00 0.00 3.16
238 239 5.697473 TGCCGATTCAAATACAAAACTGA 57.303 34.783 0.00 0.00 0.00 3.41
239 240 5.698832 TGCCGATTCAAATACAAAACTGAG 58.301 37.500 0.00 0.00 0.00 3.35
240 241 4.558860 GCCGATTCAAATACAAAACTGAGC 59.441 41.667 0.00 0.00 0.00 4.26
241 242 4.788100 CCGATTCAAATACAAAACTGAGCG 59.212 41.667 0.00 0.00 0.00 5.03
242 243 4.788100 CGATTCAAATACAAAACTGAGCGG 59.212 41.667 0.00 0.00 0.00 5.52
243 244 5.390461 CGATTCAAATACAAAACTGAGCGGA 60.390 40.000 0.00 0.00 0.00 5.54
244 245 4.742438 TCAAATACAAAACTGAGCGGAC 57.258 40.909 0.00 0.00 0.00 4.79
245 246 3.185594 TCAAATACAAAACTGAGCGGACG 59.814 43.478 0.00 0.00 0.00 4.79
246 247 1.076332 ATACAAAACTGAGCGGACGC 58.924 50.000 8.91 8.91 42.33 5.19
247 248 0.947180 TACAAAACTGAGCGGACGCC 60.947 55.000 13.63 5.70 43.17 5.68
267 268 4.595538 ACGTGCGGCCGACTCAAA 62.596 61.111 33.48 2.76 0.00 2.69
268 269 4.072088 CGTGCGGCCGACTCAAAC 62.072 66.667 33.48 14.77 0.00 2.93
269 270 4.072088 GTGCGGCCGACTCAAACG 62.072 66.667 33.48 0.00 0.00 3.60
279 280 3.936902 CGACTCAAACGGACAAAGAAA 57.063 42.857 0.00 0.00 0.00 2.52
280 281 4.267357 CGACTCAAACGGACAAAGAAAA 57.733 40.909 0.00 0.00 0.00 2.29
281 282 4.844267 CGACTCAAACGGACAAAGAAAAT 58.156 39.130 0.00 0.00 0.00 1.82
282 283 5.981174 CGACTCAAACGGACAAAGAAAATA 58.019 37.500 0.00 0.00 0.00 1.40
283 284 5.844396 CGACTCAAACGGACAAAGAAAATAC 59.156 40.000 0.00 0.00 0.00 1.89
284 285 6.510478 CGACTCAAACGGACAAAGAAAATACA 60.510 38.462 0.00 0.00 0.00 2.29
285 286 7.090953 ACTCAAACGGACAAAGAAAATACAA 57.909 32.000 0.00 0.00 0.00 2.41
286 287 7.540299 ACTCAAACGGACAAAGAAAATACAAA 58.460 30.769 0.00 0.00 0.00 2.83
287 288 8.194769 ACTCAAACGGACAAAGAAAATACAAAT 58.805 29.630 0.00 0.00 0.00 2.32
288 289 8.346476 TCAAACGGACAAAGAAAATACAAATG 57.654 30.769 0.00 0.00 0.00 2.32
289 290 6.763303 AACGGACAAAGAAAATACAAATGC 57.237 33.333 0.00 0.00 0.00 3.56
290 291 4.915085 ACGGACAAAGAAAATACAAATGCG 59.085 37.500 0.00 0.00 0.00 4.73
291 292 4.915085 CGGACAAAGAAAATACAAATGCGT 59.085 37.500 0.00 0.00 0.00 5.24
292 293 5.059221 CGGACAAAGAAAATACAAATGCGTC 59.941 40.000 0.00 0.00 0.00 5.19
293 294 5.059221 GGACAAAGAAAATACAAATGCGTCG 59.941 40.000 0.00 0.00 0.00 5.12
294 295 5.516090 ACAAAGAAAATACAAATGCGTCGT 58.484 33.333 0.00 0.00 0.00 4.34
295 296 5.974751 ACAAAGAAAATACAAATGCGTCGTT 59.025 32.000 0.00 0.00 0.00 3.85
296 297 6.141685 ACAAAGAAAATACAAATGCGTCGTTC 59.858 34.615 0.00 0.00 0.00 3.95
297 298 4.391358 AGAAAATACAAATGCGTCGTTCG 58.609 39.130 0.00 0.00 43.12 3.95
298 299 3.799137 AAATACAAATGCGTCGTTCGT 57.201 38.095 0.00 0.00 42.13 3.85
299 300 3.799137 AATACAAATGCGTCGTTCGTT 57.201 38.095 0.00 0.00 42.13 3.85
300 301 3.799137 ATACAAATGCGTCGTTCGTTT 57.201 38.095 0.00 0.00 42.13 3.60
301 302 1.737249 ACAAATGCGTCGTTCGTTTG 58.263 45.000 12.96 12.96 39.62 2.93
302 303 1.328069 ACAAATGCGTCGTTCGTTTGA 59.672 42.857 18.48 0.22 37.56 2.69
303 304 1.962547 CAAATGCGTCGTTCGTTTGAG 59.037 47.619 10.33 0.00 37.56 3.02
304 305 1.214367 AATGCGTCGTTCGTTTGAGT 58.786 45.000 0.00 0.00 42.13 3.41
305 306 0.782384 ATGCGTCGTTCGTTTGAGTC 59.218 50.000 0.00 0.00 42.13 3.36
306 307 1.125266 GCGTCGTTCGTTTGAGTCG 59.875 57.895 0.00 0.00 42.13 4.18
307 308 1.125266 CGTCGTTCGTTTGAGTCGC 59.875 57.895 0.00 0.00 34.52 5.19
308 309 1.485943 GTCGTTCGTTTGAGTCGCC 59.514 57.895 0.00 0.00 0.00 5.54
309 310 1.662446 TCGTTCGTTTGAGTCGCCC 60.662 57.895 0.00 0.00 0.00 6.13
310 311 1.952133 CGTTCGTTTGAGTCGCCCA 60.952 57.895 0.00 0.00 0.00 5.36
311 312 1.289109 CGTTCGTTTGAGTCGCCCAT 61.289 55.000 0.00 0.00 0.00 4.00
312 313 0.872388 GTTCGTTTGAGTCGCCCATT 59.128 50.000 0.00 0.00 0.00 3.16
313 314 0.871722 TTCGTTTGAGTCGCCCATTG 59.128 50.000 0.00 0.00 0.00 2.82
314 315 0.953471 TCGTTTGAGTCGCCCATTGG 60.953 55.000 0.00 0.00 0.00 3.16
315 316 0.953471 CGTTTGAGTCGCCCATTGGA 60.953 55.000 3.62 0.00 0.00 3.53
316 317 0.804989 GTTTGAGTCGCCCATTGGAG 59.195 55.000 3.62 0.00 0.00 3.86
317 318 0.400213 TTTGAGTCGCCCATTGGAGT 59.600 50.000 3.62 0.00 32.47 3.85
318 319 0.400213 TTGAGTCGCCCATTGGAGTT 59.600 50.000 3.62 0.00 32.47 3.01
319 320 0.321564 TGAGTCGCCCATTGGAGTTG 60.322 55.000 3.62 0.00 32.47 3.16
320 321 1.648467 GAGTCGCCCATTGGAGTTGC 61.648 60.000 3.62 0.00 32.47 4.17
321 322 1.675641 GTCGCCCATTGGAGTTGCT 60.676 57.895 3.62 0.00 32.47 3.91
322 323 1.377202 TCGCCCATTGGAGTTGCTC 60.377 57.895 3.62 0.00 32.47 4.26
323 324 1.377725 CGCCCATTGGAGTTGCTCT 60.378 57.895 3.62 0.00 0.00 4.09
324 325 0.962356 CGCCCATTGGAGTTGCTCTT 60.962 55.000 3.62 0.00 0.00 2.85
325 326 1.678728 CGCCCATTGGAGTTGCTCTTA 60.679 52.381 3.62 0.00 0.00 2.10
326 327 1.745653 GCCCATTGGAGTTGCTCTTAC 59.254 52.381 3.62 0.00 0.00 2.34
327 328 2.369394 CCCATTGGAGTTGCTCTTACC 58.631 52.381 3.62 0.00 0.00 2.85
377 379 2.005960 CTCCTGCGTACGGAAGAGGG 62.006 65.000 23.26 15.37 0.00 4.30
378 380 2.202756 CTGCGTACGGAAGAGGGC 60.203 66.667 18.39 0.00 0.00 5.19
394 396 4.088762 GCATCACGTGTGCCGGTG 62.089 66.667 23.82 12.84 42.24 4.94
395 397 2.664851 CATCACGTGTGCCGGTGT 60.665 61.111 16.51 0.00 42.24 4.16
396 398 2.664851 ATCACGTGTGCCGGTGTG 60.665 61.111 16.51 4.97 42.24 3.82
538 545 1.134965 CCATCGGATATTCGAGGCTCC 60.135 57.143 12.58 0.00 42.69 4.70
664 678 2.553770 CGCACGGAATTCAACGCA 59.446 55.556 7.93 0.00 0.00 5.24
762 776 2.163613 TGCAGTGAGTAGTGGTATCGTG 59.836 50.000 0.00 0.00 0.00 4.35
940 968 2.261172 TATCCACCGTGTCGACGCTG 62.261 60.000 25.28 21.38 44.68 5.18
1009 1041 0.956410 TACGGTGAAAATGGCGGGTG 60.956 55.000 0.00 0.00 0.00 4.61
1014 1046 1.182385 TGAAAATGGCGGGTGGGTTC 61.182 55.000 0.00 0.00 0.00 3.62
1134 1184 2.434185 GCGTTCGGACCATGCTCA 60.434 61.111 0.00 0.00 0.00 4.26
1419 1469 1.296056 CGACGACCACCCCATTCAAC 61.296 60.000 0.00 0.00 0.00 3.18
1581 1631 2.439701 CAGGACTCCCTCGCCGTA 60.440 66.667 0.00 0.00 42.02 4.02
1878 1928 4.891727 ATGACCGGCATCCGCGTC 62.892 66.667 4.92 15.18 46.86 5.19
2482 2540 1.012086 CTCCATCGGTGTGCAAGATG 58.988 55.000 12.84 12.84 40.86 2.90
2528 2591 3.932289 GTGTGTCTCACGGGTTCG 58.068 61.111 0.00 0.00 37.14 3.95
2580 2643 5.339778 GCTTGTTAGGGTTTAAGAGGGGTAT 60.340 44.000 0.00 0.00 0.00 2.73
2583 2646 5.552766 TGTTAGGGTTTAAGAGGGGTATTGT 59.447 40.000 0.00 0.00 0.00 2.71
2589 2652 5.537295 GGTTTAAGAGGGGTATTGTGTTTGT 59.463 40.000 0.00 0.00 0.00 2.83
2597 2660 6.885922 AGGGGTATTGTGTTTGTATCTACTC 58.114 40.000 0.00 0.00 0.00 2.59
2660 2726 4.712476 AGAAAGTATATGCTGCTTCTGGG 58.288 43.478 6.89 0.00 0.00 4.45
2667 2733 5.775813 ATATGCTGCTTCTGGGAGATTAT 57.224 39.130 0.00 0.00 35.24 1.28
2668 2734 6.881067 ATATGCTGCTTCTGGGAGATTATA 57.119 37.500 0.00 0.00 35.24 0.98
2669 2735 5.775813 ATGCTGCTTCTGGGAGATTATAT 57.224 39.130 0.00 0.00 35.24 0.86
2710 2776 7.397192 ACCAGAAATCCTATTACAAGCATGTTT 59.603 33.333 0.00 0.00 41.05 2.83
2763 2831 7.682055 CACGAAAATTAATAACACAAAATGCCG 59.318 33.333 0.00 0.00 0.00 5.69
2765 2833 7.890717 CGAAAATTAATAACACAAAATGCCGTC 59.109 33.333 0.00 0.00 0.00 4.79
2780 2848 4.309950 GTCCCCACGAGTGCGGTT 62.310 66.667 6.79 0.00 43.17 4.44
2831 2903 6.385467 AGGCAAAGAGATATCAAACCTAGACT 59.615 38.462 5.32 0.00 0.00 3.24
2833 2905 7.268586 GCAAAGAGATATCAAACCTAGACTCA 58.731 38.462 5.32 0.00 0.00 3.41
2836 2908 9.432982 AAAGAGATATCAAACCTAGACTCAGAT 57.567 33.333 5.32 0.00 0.00 2.90
2840 2912 9.206690 AGATATCAAACCTAGACTCAGATGAAA 57.793 33.333 5.32 0.00 0.00 2.69
2877 2949 6.542005 CCTAAATGATAAGTGCCACATGTGTA 59.458 38.462 23.79 10.05 0.00 2.90
2890 2962 3.599412 TGTGTAACACGAAGCCCTC 57.401 52.632 0.00 0.00 45.67 4.30
2893 2965 1.180456 TGTAACACGAAGCCCTCCGA 61.180 55.000 0.00 0.00 0.00 4.55
2894 2966 0.735287 GTAACACGAAGCCCTCCGAC 60.735 60.000 0.00 0.00 0.00 4.79
2895 2967 0.896940 TAACACGAAGCCCTCCGACT 60.897 55.000 0.00 0.00 0.00 4.18
2900 2972 0.962489 CGAAGCCCTCCGACTATGAT 59.038 55.000 0.00 0.00 0.00 2.45
2930 3003 7.789273 TTACAACTAAACTTGTCATCCGAAA 57.211 32.000 0.00 0.00 35.87 3.46
2932 3005 6.725246 ACAACTAAACTTGTCATCCGAAAAG 58.275 36.000 0.00 0.00 41.62 2.27
2971 3044 2.270352 AACTGAAACTTGCCATCCGA 57.730 45.000 0.00 0.00 0.00 4.55
2974 3047 2.955660 ACTGAAACTTGCCATCCGAAAA 59.044 40.909 0.00 0.00 0.00 2.29
2975 3048 3.383185 ACTGAAACTTGCCATCCGAAAAA 59.617 39.130 0.00 0.00 0.00 1.94
2992 3065 1.525941 AAAATGTTGCCATGCTTGCC 58.474 45.000 0.00 0.00 0.00 4.52
2993 3066 0.397187 AAATGTTGCCATGCTTGCCA 59.603 45.000 0.00 0.00 0.00 4.92
2994 3067 0.616371 AATGTTGCCATGCTTGCCAT 59.384 45.000 0.00 0.00 33.39 4.40
2995 3068 1.487300 ATGTTGCCATGCTTGCCATA 58.513 45.000 0.00 0.00 31.47 2.74
2996 3069 1.264295 TGTTGCCATGCTTGCCATAA 58.736 45.000 0.00 0.00 31.47 1.90
2997 3070 1.622312 TGTTGCCATGCTTGCCATAAA 59.378 42.857 0.00 0.00 31.47 1.40
2998 3071 2.038164 TGTTGCCATGCTTGCCATAAAA 59.962 40.909 0.00 0.00 31.47 1.52
2999 3072 3.072944 GTTGCCATGCTTGCCATAAAAA 58.927 40.909 0.00 0.00 31.47 1.94
3000 3073 2.975266 TGCCATGCTTGCCATAAAAAG 58.025 42.857 0.00 0.00 31.47 2.27
3001 3074 2.566279 TGCCATGCTTGCCATAAAAAGA 59.434 40.909 0.00 0.00 31.47 2.52
3002 3075 3.192466 GCCATGCTTGCCATAAAAAGAG 58.808 45.455 0.00 0.00 31.47 2.85
3003 3076 3.368739 GCCATGCTTGCCATAAAAAGAGT 60.369 43.478 0.00 0.00 31.47 3.24
3004 3077 4.824289 CCATGCTTGCCATAAAAAGAGTT 58.176 39.130 0.00 0.00 31.47 3.01
3005 3078 4.866486 CCATGCTTGCCATAAAAAGAGTTC 59.134 41.667 0.00 0.00 31.47 3.01
3006 3079 4.159377 TGCTTGCCATAAAAAGAGTTCG 57.841 40.909 0.00 0.00 0.00 3.95
3007 3080 3.057596 TGCTTGCCATAAAAAGAGTTCGG 60.058 43.478 0.00 0.00 0.00 4.30
3008 3081 3.190535 GCTTGCCATAAAAAGAGTTCGGA 59.809 43.478 0.00 0.00 0.00 4.55
3009 3082 4.142381 GCTTGCCATAAAAAGAGTTCGGAT 60.142 41.667 0.00 0.00 0.00 4.18
3010 3083 5.622233 GCTTGCCATAAAAAGAGTTCGGATT 60.622 40.000 0.00 0.00 0.00 3.01
3011 3084 5.975693 TGCCATAAAAAGAGTTCGGATTT 57.024 34.783 0.00 0.00 0.00 2.17
3012 3085 5.708948 TGCCATAAAAAGAGTTCGGATTTG 58.291 37.500 0.00 0.00 0.00 2.32
3013 3086 5.242838 TGCCATAAAAAGAGTTCGGATTTGT 59.757 36.000 0.00 0.00 0.00 2.83
3014 3087 5.800438 GCCATAAAAAGAGTTCGGATTTGTC 59.200 40.000 0.00 0.00 0.00 3.18
3015 3088 6.569610 GCCATAAAAAGAGTTCGGATTTGTCA 60.570 38.462 0.00 0.00 0.00 3.58
3016 3089 7.538575 CCATAAAAAGAGTTCGGATTTGTCAT 58.461 34.615 0.00 0.00 0.00 3.06
3017 3090 7.485913 CCATAAAAAGAGTTCGGATTTGTCATG 59.514 37.037 0.00 0.00 0.00 3.07
3018 3091 6.391227 AAAAAGAGTTCGGATTTGTCATGT 57.609 33.333 0.00 0.00 0.00 3.21
3019 3092 5.362556 AAAGAGTTCGGATTTGTCATGTG 57.637 39.130 0.00 0.00 0.00 3.21
3020 3093 4.008074 AGAGTTCGGATTTGTCATGTGT 57.992 40.909 0.00 0.00 0.00 3.72
3021 3094 4.389374 AGAGTTCGGATTTGTCATGTGTT 58.611 39.130 0.00 0.00 0.00 3.32
3022 3095 4.452455 AGAGTTCGGATTTGTCATGTGTTC 59.548 41.667 0.00 0.00 0.00 3.18
3023 3096 3.186409 AGTTCGGATTTGTCATGTGTTCG 59.814 43.478 0.00 0.00 0.00 3.95
3024 3097 2.761559 TCGGATTTGTCATGTGTTCGT 58.238 42.857 0.00 0.00 0.00 3.85
3025 3098 2.478514 TCGGATTTGTCATGTGTTCGTG 59.521 45.455 0.00 0.00 0.00 4.35
3026 3099 2.223144 CGGATTTGTCATGTGTTCGTGT 59.777 45.455 0.00 0.00 32.85 4.49
3027 3100 3.303725 CGGATTTGTCATGTGTTCGTGTT 60.304 43.478 0.00 0.00 32.85 3.32
3028 3101 4.084276 CGGATTTGTCATGTGTTCGTGTTA 60.084 41.667 0.00 0.00 32.85 2.41
3029 3102 5.144359 GGATTTGTCATGTGTTCGTGTTAC 58.856 41.667 0.00 0.00 32.85 2.50
3030 3103 5.277586 GGATTTGTCATGTGTTCGTGTTACA 60.278 40.000 0.00 0.00 32.85 2.41
3031 3104 4.523853 TTGTCATGTGTTCGTGTTACAC 57.476 40.909 5.27 5.27 44.73 2.90
3046 3119 5.190992 TGTTACACGTGTGACACTTATCT 57.809 39.130 34.32 7.12 39.21 1.98
3047 3120 6.316440 TGTTACACGTGTGACACTTATCTA 57.684 37.500 34.32 15.23 39.21 1.98
3048 3121 6.916440 TGTTACACGTGTGACACTTATCTAT 58.084 36.000 34.32 6.49 39.21 1.98
3049 3122 8.042944 TGTTACACGTGTGACACTTATCTATA 57.957 34.615 34.32 13.93 39.21 1.31
3050 3123 8.680001 TGTTACACGTGTGACACTTATCTATAT 58.320 33.333 34.32 5.49 39.21 0.86
3051 3124 9.167239 GTTACACGTGTGACACTTATCTATATC 57.833 37.037 31.62 5.61 35.01 1.63
3052 3125 7.329588 ACACGTGTGACACTTATCTATATCA 57.670 36.000 22.71 0.00 31.34 2.15
3053 3126 7.768240 ACACGTGTGACACTTATCTATATCAA 58.232 34.615 22.71 0.00 31.34 2.57
3054 3127 8.414003 ACACGTGTGACACTTATCTATATCAAT 58.586 33.333 22.71 0.00 31.34 2.57
3055 3128 9.893305 CACGTGTGACACTTATCTATATCAATA 57.107 33.333 14.42 0.00 31.34 1.90
3074 3147 7.404671 TCAATATAAAAAGACCCAAAGAGGC 57.595 36.000 0.00 0.00 35.39 4.70
3075 3148 6.951198 TCAATATAAAAAGACCCAAAGAGGCA 59.049 34.615 0.00 0.00 35.39 4.75
3076 3149 7.122650 TCAATATAAAAAGACCCAAAGAGGCAG 59.877 37.037 0.00 0.00 35.39 4.85
3077 3150 3.312736 AAAAAGACCCAAAGAGGCAGA 57.687 42.857 0.00 0.00 35.39 4.26
3078 3151 3.532641 AAAAGACCCAAAGAGGCAGAT 57.467 42.857 0.00 0.00 35.39 2.90
3079 3152 2.797177 AAGACCCAAAGAGGCAGATC 57.203 50.000 0.00 0.00 35.39 2.75
3080 3153 0.915364 AGACCCAAAGAGGCAGATCC 59.085 55.000 0.00 0.00 35.39 3.36
3081 3154 0.620556 GACCCAAAGAGGCAGATCCA 59.379 55.000 0.00 0.00 37.29 3.41
3082 3155 1.004745 GACCCAAAGAGGCAGATCCAA 59.995 52.381 0.00 0.00 37.29 3.53
3083 3156 1.642762 ACCCAAAGAGGCAGATCCAAT 59.357 47.619 0.00 0.00 37.29 3.16
3084 3157 2.043526 ACCCAAAGAGGCAGATCCAATT 59.956 45.455 0.00 0.00 37.29 2.32
3085 3158 3.269381 ACCCAAAGAGGCAGATCCAATTA 59.731 43.478 0.00 0.00 37.29 1.40
3086 3159 4.264352 ACCCAAAGAGGCAGATCCAATTAA 60.264 41.667 0.00 0.00 37.29 1.40
3087 3160 4.897670 CCCAAAGAGGCAGATCCAATTAAT 59.102 41.667 0.00 0.00 37.29 1.40
3088 3161 5.010415 CCCAAAGAGGCAGATCCAATTAATC 59.990 44.000 0.00 0.00 37.29 1.75
3089 3162 5.832060 CCAAAGAGGCAGATCCAATTAATCT 59.168 40.000 0.00 0.00 37.29 2.40
3090 3163 6.016443 CCAAAGAGGCAGATCCAATTAATCTC 60.016 42.308 0.62 0.00 37.29 2.75
3091 3164 4.892433 AGAGGCAGATCCAATTAATCTCG 58.108 43.478 0.62 0.00 37.29 4.04
3092 3165 3.999663 GAGGCAGATCCAATTAATCTCGG 59.000 47.826 0.62 0.00 37.29 4.63
3093 3166 2.485814 GGCAGATCCAATTAATCTCGGC 59.514 50.000 0.62 2.99 31.05 5.54
3094 3167 2.485814 GCAGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 31.05 6.13
3095 3168 3.743521 CAGATCCAATTAATCTCGGCCA 58.256 45.455 2.24 0.00 31.05 5.36
3096 3169 4.330250 CAGATCCAATTAATCTCGGCCAT 58.670 43.478 2.24 0.00 31.05 4.40
3097 3170 4.394300 CAGATCCAATTAATCTCGGCCATC 59.606 45.833 2.24 0.00 31.05 3.51
3098 3171 3.855255 TCCAATTAATCTCGGCCATCA 57.145 42.857 2.24 0.00 0.00 3.07
3099 3172 4.163441 TCCAATTAATCTCGGCCATCAA 57.837 40.909 2.24 0.00 0.00 2.57
3100 3173 4.531854 TCCAATTAATCTCGGCCATCAAA 58.468 39.130 2.24 0.00 0.00 2.69
3101 3174 5.139727 TCCAATTAATCTCGGCCATCAAAT 58.860 37.500 2.24 0.00 0.00 2.32
3102 3175 5.241506 TCCAATTAATCTCGGCCATCAAATC 59.758 40.000 2.24 0.00 0.00 2.17
3103 3176 5.009911 CCAATTAATCTCGGCCATCAAATCA 59.990 40.000 2.24 0.00 0.00 2.57
3104 3177 6.294899 CCAATTAATCTCGGCCATCAAATCAT 60.295 38.462 2.24 0.00 0.00 2.45
3105 3178 5.694231 TTAATCTCGGCCATCAAATCATG 57.306 39.130 2.24 0.00 0.00 3.07
3106 3179 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
3107 3180 3.003394 TCTCGGCCATCAAATCATGTT 57.997 42.857 2.24 0.00 0.00 2.71
3108 3181 4.149511 TCTCGGCCATCAAATCATGTTA 57.850 40.909 2.24 0.00 0.00 2.41
3109 3182 4.522114 TCTCGGCCATCAAATCATGTTAA 58.478 39.130 2.24 0.00 0.00 2.01
3110 3183 5.132502 TCTCGGCCATCAAATCATGTTAAT 58.867 37.500 2.24 0.00 0.00 1.40
3111 3184 5.239306 TCTCGGCCATCAAATCATGTTAATC 59.761 40.000 2.24 0.00 0.00 1.75
3112 3185 4.278170 TCGGCCATCAAATCATGTTAATCC 59.722 41.667 2.24 0.00 0.00 3.01
3113 3186 4.037803 CGGCCATCAAATCATGTTAATCCA 59.962 41.667 2.24 0.00 0.00 3.41
3114 3187 5.451659 CGGCCATCAAATCATGTTAATCCAA 60.452 40.000 2.24 0.00 0.00 3.53
3115 3188 5.754890 GGCCATCAAATCATGTTAATCCAAC 59.245 40.000 0.00 0.00 37.67 3.77
3116 3189 5.459762 GCCATCAAATCATGTTAATCCAACG 59.540 40.000 0.00 0.00 40.26 4.10
3117 3190 6.680131 GCCATCAAATCATGTTAATCCAACGA 60.680 38.462 0.00 0.00 40.26 3.85
3118 3191 6.692681 CCATCAAATCATGTTAATCCAACGAC 59.307 38.462 0.00 0.00 40.26 4.34
3119 3192 6.189677 TCAAATCATGTTAATCCAACGACC 57.810 37.500 0.00 0.00 40.26 4.79
3120 3193 5.943416 TCAAATCATGTTAATCCAACGACCT 59.057 36.000 0.00 0.00 40.26 3.85
3121 3194 7.106890 TCAAATCATGTTAATCCAACGACCTA 58.893 34.615 0.00 0.00 40.26 3.08
3122 3195 7.279981 TCAAATCATGTTAATCCAACGACCTAG 59.720 37.037 0.00 0.00 40.26 3.02
3123 3196 5.925506 TCATGTTAATCCAACGACCTAGA 57.074 39.130 0.00 0.00 40.26 2.43
3124 3197 5.657474 TCATGTTAATCCAACGACCTAGAC 58.343 41.667 0.00 0.00 40.26 2.59
3125 3198 5.421056 TCATGTTAATCCAACGACCTAGACT 59.579 40.000 0.00 0.00 40.26 3.24
3126 3199 5.068234 TGTTAATCCAACGACCTAGACTG 57.932 43.478 0.00 0.00 40.26 3.51
3127 3200 2.674796 AATCCAACGACCTAGACTGC 57.325 50.000 0.00 0.00 0.00 4.40
3128 3201 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
3129 3202 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
3130 3203 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
3131 3204 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
3132 3205 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
3133 3206 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
3134 3207 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
3135 3208 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
3136 3209 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
3137 3210 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
3138 3211 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
3139 3212 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
3140 3213 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
3141 3214 1.001293 AGACTGCTTCAATGTCGAGCA 59.999 47.619 8.00 8.00 43.56 4.26
3142 3215 1.127582 GACTGCTTCAATGTCGAGCAC 59.872 52.381 5.06 0.00 41.15 4.40
3143 3216 1.270518 ACTGCTTCAATGTCGAGCACT 60.271 47.619 5.06 0.00 41.15 4.40
3144 3217 1.392853 CTGCTTCAATGTCGAGCACTC 59.607 52.381 5.06 0.00 41.15 3.51
3145 3218 1.270252 TGCTTCAATGTCGAGCACTCA 60.270 47.619 5.06 0.00 41.15 3.41
3146 3219 1.800586 GCTTCAATGTCGAGCACTCAA 59.199 47.619 0.00 0.00 36.45 3.02
3147 3220 2.412065 GCTTCAATGTCGAGCACTCAAC 60.412 50.000 0.00 0.00 36.45 3.18
3148 3221 2.524569 TCAATGTCGAGCACTCAACA 57.475 45.000 0.00 0.00 0.00 3.33
3149 3222 2.135139 TCAATGTCGAGCACTCAACAC 58.865 47.619 0.00 0.00 0.00 3.32
3150 3223 1.136529 CAATGTCGAGCACTCAACACG 60.137 52.381 0.00 0.00 0.00 4.49
3151 3224 0.032130 ATGTCGAGCACTCAACACGT 59.968 50.000 0.00 0.00 0.00 4.49
3152 3225 0.179121 TGTCGAGCACTCAACACGTT 60.179 50.000 0.00 0.00 0.00 3.99
3153 3226 0.928229 GTCGAGCACTCAACACGTTT 59.072 50.000 0.00 0.00 0.00 3.60
3154 3227 2.121786 GTCGAGCACTCAACACGTTTA 58.878 47.619 0.00 0.00 0.00 2.01
3155 3228 2.153247 GTCGAGCACTCAACACGTTTAG 59.847 50.000 0.00 0.00 0.00 1.85
3156 3229 1.136611 CGAGCACTCAACACGTTTAGC 60.137 52.381 0.00 0.00 0.00 3.09
3171 3244 4.459606 CGTTTAGCGTGCAGTTAATTTCA 58.540 39.130 0.00 0.00 35.54 2.69
3172 3245 5.086058 CGTTTAGCGTGCAGTTAATTTCAT 58.914 37.500 0.00 0.00 35.54 2.57
3173 3246 5.002468 CGTTTAGCGTGCAGTTAATTTCATG 59.998 40.000 0.00 0.00 35.54 3.07
3174 3247 2.867429 AGCGTGCAGTTAATTTCATGC 58.133 42.857 6.69 6.69 40.63 4.06
3175 3248 1.919918 GCGTGCAGTTAATTTCATGCC 59.080 47.619 3.91 0.00 37.89 4.40
3176 3249 2.670789 GCGTGCAGTTAATTTCATGCCA 60.671 45.455 3.91 0.00 37.89 4.92
3177 3250 3.573598 CGTGCAGTTAATTTCATGCCAA 58.426 40.909 0.00 0.00 37.89 4.52
3178 3251 3.986572 CGTGCAGTTAATTTCATGCCAAA 59.013 39.130 0.00 0.00 37.89 3.28
3179 3252 4.447054 CGTGCAGTTAATTTCATGCCAAAA 59.553 37.500 0.00 0.00 37.89 2.44
3180 3253 5.050499 CGTGCAGTTAATTTCATGCCAAAAA 60.050 36.000 0.00 0.00 37.89 1.94
3181 3254 6.347563 CGTGCAGTTAATTTCATGCCAAAAAT 60.348 34.615 0.00 0.00 37.89 1.82
3182 3255 7.148672 CGTGCAGTTAATTTCATGCCAAAAATA 60.149 33.333 0.00 0.00 37.89 1.40
3183 3256 8.502387 GTGCAGTTAATTTCATGCCAAAAATAA 58.498 29.630 0.00 0.00 37.89 1.40
3184 3257 9.228949 TGCAGTTAATTTCATGCCAAAAATAAT 57.771 25.926 6.13 0.00 37.89 1.28
3234 3307 9.712305 ATAATATCCTACTTAATATCCGCATGC 57.288 33.333 7.91 7.91 0.00 4.06
3235 3308 4.882842 TCCTACTTAATATCCGCATGCA 57.117 40.909 19.57 0.00 0.00 3.96
3236 3309 4.566004 TCCTACTTAATATCCGCATGCAC 58.434 43.478 19.57 0.00 0.00 4.57
3237 3310 4.283467 TCCTACTTAATATCCGCATGCACT 59.717 41.667 19.57 3.59 0.00 4.40
3238 3311 4.997395 CCTACTTAATATCCGCATGCACTT 59.003 41.667 19.57 3.39 0.00 3.16
3239 3312 6.014925 TCCTACTTAATATCCGCATGCACTTA 60.015 38.462 19.57 5.72 0.00 2.24
3240 3313 6.649141 CCTACTTAATATCCGCATGCACTTAA 59.351 38.462 19.57 11.55 0.00 1.85
3241 3314 7.334421 CCTACTTAATATCCGCATGCACTTAAT 59.666 37.037 19.57 5.58 0.00 1.40
3242 3315 9.366216 CTACTTAATATCCGCATGCACTTAATA 57.634 33.333 19.57 7.60 0.00 0.98
3243 3316 8.792830 ACTTAATATCCGCATGCACTTAATAT 57.207 30.769 19.57 9.48 0.00 1.28
3244 3317 9.884636 ACTTAATATCCGCATGCACTTAATATA 57.115 29.630 19.57 4.53 0.00 0.86
3246 3319 9.884636 TTAATATCCGCATGCACTTAATATACT 57.115 29.630 19.57 2.37 0.00 2.12
3247 3320 8.792830 AATATCCGCATGCACTTAATATACTT 57.207 30.769 19.57 0.00 0.00 2.24
3248 3321 6.727824 ATCCGCATGCACTTAATATACTTC 57.272 37.500 19.57 0.00 0.00 3.01
3249 3322 4.994852 TCCGCATGCACTTAATATACTTCC 59.005 41.667 19.57 0.00 0.00 3.46
3250 3323 4.754618 CCGCATGCACTTAATATACTTCCA 59.245 41.667 19.57 0.00 0.00 3.53
3251 3324 5.238432 CCGCATGCACTTAATATACTTCCAA 59.762 40.000 19.57 0.00 0.00 3.53
3252 3325 6.238621 CCGCATGCACTTAATATACTTCCAAA 60.239 38.462 19.57 0.00 0.00 3.28
3253 3326 7.362662 CGCATGCACTTAATATACTTCCAAAT 58.637 34.615 19.57 0.00 0.00 2.32
3254 3327 7.862372 CGCATGCACTTAATATACTTCCAAATT 59.138 33.333 19.57 0.00 0.00 1.82
3265 3338 9.515020 AATATACTTCCAAATTAACGTGCATTG 57.485 29.630 0.00 0.00 0.00 2.82
3266 3339 3.987220 ACTTCCAAATTAACGTGCATTGC 59.013 39.130 0.46 0.46 0.00 3.56
3267 3340 3.650070 TCCAAATTAACGTGCATTGCA 57.350 38.095 7.38 7.38 35.60 4.08
3278 3351 2.328655 TGCATTGCACGTACACATTG 57.671 45.000 7.38 0.00 31.71 2.82
3279 3352 1.876156 TGCATTGCACGTACACATTGA 59.124 42.857 7.38 0.00 31.71 2.57
3280 3353 2.241722 GCATTGCACGTACACATTGAC 58.758 47.619 3.15 1.49 0.00 3.18
3281 3354 2.095768 GCATTGCACGTACACATTGACT 60.096 45.455 3.15 0.00 0.00 3.41
3282 3355 3.124466 GCATTGCACGTACACATTGACTA 59.876 43.478 3.15 0.00 0.00 2.59
3283 3356 4.724885 GCATTGCACGTACACATTGACTAG 60.725 45.833 3.15 0.00 0.00 2.57
3284 3357 3.653539 TGCACGTACACATTGACTAGT 57.346 42.857 0.00 0.00 0.00 2.57
3285 3358 3.313690 TGCACGTACACATTGACTAGTG 58.686 45.455 0.00 0.00 41.40 2.74
3286 3359 3.004944 TGCACGTACACATTGACTAGTGA 59.995 43.478 0.00 0.00 39.03 3.41
3287 3360 3.608506 GCACGTACACATTGACTAGTGAG 59.391 47.826 0.00 0.00 39.03 3.51
3288 3361 4.166523 CACGTACACATTGACTAGTGAGG 58.833 47.826 0.00 0.00 39.03 3.86
3289 3362 3.192844 ACGTACACATTGACTAGTGAGGG 59.807 47.826 0.00 0.00 39.03 4.30
3290 3363 3.192844 CGTACACATTGACTAGTGAGGGT 59.807 47.826 0.00 0.00 39.03 4.34
3291 3364 3.963428 ACACATTGACTAGTGAGGGTC 57.037 47.619 0.00 0.00 39.03 4.46
3292 3365 3.511477 ACACATTGACTAGTGAGGGTCT 58.489 45.455 0.00 0.00 39.03 3.85
3293 3366 4.673968 ACACATTGACTAGTGAGGGTCTA 58.326 43.478 0.00 0.00 39.03 2.59
3294 3367 5.084519 ACACATTGACTAGTGAGGGTCTAA 58.915 41.667 0.00 0.00 39.03 2.10
3295 3368 5.542635 ACACATTGACTAGTGAGGGTCTAAA 59.457 40.000 0.00 0.00 39.03 1.85
3296 3369 6.042781 ACACATTGACTAGTGAGGGTCTAAAA 59.957 38.462 0.00 0.00 39.03 1.52
3297 3370 6.934645 CACATTGACTAGTGAGGGTCTAAAAA 59.065 38.462 0.00 0.00 37.97 1.94
3298 3371 7.118390 CACATTGACTAGTGAGGGTCTAAAAAG 59.882 40.741 0.00 0.00 37.97 2.27
3299 3372 6.742559 TTGACTAGTGAGGGTCTAAAAAGT 57.257 37.500 0.00 0.00 34.01 2.66
3300 3373 6.097915 TGACTAGTGAGGGTCTAAAAAGTG 57.902 41.667 0.00 0.00 34.01 3.16
3301 3374 5.836898 TGACTAGTGAGGGTCTAAAAAGTGA 59.163 40.000 0.00 0.00 34.01 3.41
3302 3375 6.099159 ACTAGTGAGGGTCTAAAAAGTGAC 57.901 41.667 0.00 0.00 0.00 3.67
3303 3376 5.601313 ACTAGTGAGGGTCTAAAAAGTGACA 59.399 40.000 0.00 0.00 35.11 3.58
3304 3377 5.367945 AGTGAGGGTCTAAAAAGTGACAA 57.632 39.130 0.00 0.00 35.11 3.18
3305 3378 5.123936 AGTGAGGGTCTAAAAAGTGACAAC 58.876 41.667 0.00 0.00 35.11 3.32
3306 3379 4.879545 GTGAGGGTCTAAAAAGTGACAACA 59.120 41.667 0.00 0.00 35.11 3.33
3307 3380 5.355910 GTGAGGGTCTAAAAAGTGACAACAA 59.644 40.000 0.00 0.00 35.11 2.83
3308 3381 5.946972 TGAGGGTCTAAAAAGTGACAACAAA 59.053 36.000 0.00 0.00 35.11 2.83
3309 3382 6.434652 TGAGGGTCTAAAAAGTGACAACAAAA 59.565 34.615 0.00 0.00 35.11 2.44
3310 3383 6.627243 AGGGTCTAAAAAGTGACAACAAAAC 58.373 36.000 0.00 0.00 35.11 2.43
3311 3384 5.808540 GGGTCTAAAAAGTGACAACAAAACC 59.191 40.000 0.00 0.00 35.11 3.27
3312 3385 6.391537 GGTCTAAAAAGTGACAACAAAACCA 58.608 36.000 0.00 0.00 35.11 3.67
3313 3386 6.530181 GGTCTAAAAAGTGACAACAAAACCAG 59.470 38.462 0.00 0.00 35.11 4.00
3314 3387 6.034577 GTCTAAAAAGTGACAACAAAACCAGC 59.965 38.462 0.00 0.00 33.75 4.85
3315 3388 2.559998 AAGTGACAACAAAACCAGCG 57.440 45.000 0.00 0.00 0.00 5.18
3316 3389 1.745232 AGTGACAACAAAACCAGCGA 58.255 45.000 0.00 0.00 0.00 4.93
3317 3390 1.400494 AGTGACAACAAAACCAGCGAC 59.600 47.619 0.00 0.00 0.00 5.19
3318 3391 1.131504 GTGACAACAAAACCAGCGACA 59.868 47.619 0.00 0.00 0.00 4.35
3319 3392 1.131504 TGACAACAAAACCAGCGACAC 59.868 47.619 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.884668 AAATAGTGGGACTTGAGTTCGA 57.115 40.909 0.00 0.00 0.00 3.71
1 2 5.941948 AAAAATAGTGGGACTTGAGTTCG 57.058 39.130 0.00 0.00 0.00 3.95
20 21 1.206610 ACACATGCCAGCACACAAAAA 59.793 42.857 0.00 0.00 0.00 1.94
21 22 0.822811 ACACATGCCAGCACACAAAA 59.177 45.000 0.00 0.00 0.00 2.44
22 23 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
23 24 1.734748 CACACATGCCAGCACACAA 59.265 52.632 0.00 0.00 0.00 3.33
24 25 2.847754 GCACACATGCCAGCACACA 61.848 57.895 0.00 0.00 46.97 3.72
25 26 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
59 60 2.177531 CACAGTTCATGCTGGCGC 59.822 61.111 0.00 0.00 40.59 6.53
60 61 0.673333 TACCACAGTTCATGCTGGCG 60.673 55.000 5.48 0.00 40.59 5.69
61 62 1.755179 ATACCACAGTTCATGCTGGC 58.245 50.000 5.48 0.00 40.59 4.85
62 63 4.460382 AGAAAATACCACAGTTCATGCTGG 59.540 41.667 5.48 0.00 40.59 4.85
63 64 5.181811 TCAGAAAATACCACAGTTCATGCTG 59.818 40.000 0.00 0.00 41.92 4.41
64 65 5.316167 TCAGAAAATACCACAGTTCATGCT 58.684 37.500 0.00 0.00 0.00 3.79
65 66 5.627499 TCAGAAAATACCACAGTTCATGC 57.373 39.130 0.00 0.00 0.00 4.06
66 67 6.088824 GCTTCAGAAAATACCACAGTTCATG 58.911 40.000 0.00 0.00 0.00 3.07
67 68 5.183904 GGCTTCAGAAAATACCACAGTTCAT 59.816 40.000 0.00 0.00 0.00 2.57
68 69 4.518970 GGCTTCAGAAAATACCACAGTTCA 59.481 41.667 0.00 0.00 0.00 3.18
69 70 4.378459 CGGCTTCAGAAAATACCACAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
70 71 3.502211 CGGCTTCAGAAAATACCACAGTT 59.498 43.478 0.00 0.00 0.00 3.16
71 72 3.074412 CGGCTTCAGAAAATACCACAGT 58.926 45.455 0.00 0.00 0.00 3.55
72 73 2.420022 CCGGCTTCAGAAAATACCACAG 59.580 50.000 0.00 0.00 0.00 3.66
73 74 2.432444 CCGGCTTCAGAAAATACCACA 58.568 47.619 0.00 0.00 0.00 4.17
74 75 1.132453 GCCGGCTTCAGAAAATACCAC 59.868 52.381 22.15 0.00 0.00 4.16
75 76 1.271652 TGCCGGCTTCAGAAAATACCA 60.272 47.619 29.70 0.00 0.00 3.25
76 77 1.459450 TGCCGGCTTCAGAAAATACC 58.541 50.000 29.70 0.00 0.00 2.73
77 78 3.119495 ACAATGCCGGCTTCAGAAAATAC 60.119 43.478 29.70 0.00 0.00 1.89
78 79 3.088532 ACAATGCCGGCTTCAGAAAATA 58.911 40.909 29.70 2.45 0.00 1.40
79 80 1.895131 ACAATGCCGGCTTCAGAAAAT 59.105 42.857 29.70 6.94 0.00 1.82
80 81 1.327303 ACAATGCCGGCTTCAGAAAA 58.673 45.000 29.70 4.25 0.00 2.29
81 82 2.192664 TACAATGCCGGCTTCAGAAA 57.807 45.000 29.70 5.17 0.00 2.52
82 83 2.016318 CATACAATGCCGGCTTCAGAA 58.984 47.619 29.70 6.08 0.00 3.02
83 84 1.667236 CATACAATGCCGGCTTCAGA 58.333 50.000 29.70 7.00 0.00 3.27
94 95 2.328989 CAGCGCCGGCATACAATG 59.671 61.111 28.98 9.29 43.41 2.82
95 96 2.901840 CCAGCGCCGGCATACAAT 60.902 61.111 28.98 1.24 43.41 2.71
112 113 2.842457 TGTCTCATACAGGCATCATGC 58.158 47.619 0.00 0.00 36.38 4.06
113 114 3.751698 CCATGTCTCATACAGGCATCATG 59.248 47.826 0.00 0.00 44.86 3.07
114 115 3.809678 GCCATGTCTCATACAGGCATCAT 60.810 47.826 11.32 0.00 44.86 2.45
115 116 2.486013 GCCATGTCTCATACAGGCATCA 60.486 50.000 11.32 0.00 44.86 3.07
116 117 2.149578 GCCATGTCTCATACAGGCATC 58.850 52.381 11.32 0.00 44.86 3.91
118 119 0.181114 GGCCATGTCTCATACAGGCA 59.819 55.000 0.00 0.00 46.13 4.75
119 120 0.882042 CGGCCATGTCTCATACAGGC 60.882 60.000 2.24 0.00 44.81 4.85
120 121 0.882042 GCGGCCATGTCTCATACAGG 60.882 60.000 2.24 0.00 42.70 4.00
121 122 0.105593 AGCGGCCATGTCTCATACAG 59.894 55.000 2.24 0.00 42.70 2.74
122 123 0.179076 CAGCGGCCATGTCTCATACA 60.179 55.000 2.24 0.00 43.86 2.29
123 124 0.882042 CCAGCGGCCATGTCTCATAC 60.882 60.000 2.24 0.00 0.00 2.39
124 125 1.447217 CCAGCGGCCATGTCTCATA 59.553 57.895 2.24 0.00 0.00 2.15
125 126 2.191375 CCAGCGGCCATGTCTCAT 59.809 61.111 2.24 0.00 0.00 2.90
126 127 4.783621 GCCAGCGGCCATGTCTCA 62.784 66.667 2.24 0.00 44.06 3.27
136 137 2.202919 TGTCGATCATGCCAGCGG 60.203 61.111 0.00 0.00 0.00 5.52
137 138 2.879070 GCTGTCGATCATGCCAGCG 61.879 63.158 7.57 0.00 40.67 5.18
138 139 2.879070 CGCTGTCGATCATGCCAGC 61.879 63.158 12.13 12.13 45.24 4.85
139 140 2.242572 CCGCTGTCGATCATGCCAG 61.243 63.158 0.00 0.00 38.10 4.85
140 141 2.202919 CCGCTGTCGATCATGCCA 60.203 61.111 0.00 0.00 38.10 4.92
141 142 2.969238 CCCGCTGTCGATCATGCC 60.969 66.667 0.00 0.00 38.10 4.40
142 143 3.643978 GCCCGCTGTCGATCATGC 61.644 66.667 0.00 0.00 38.10 4.06
143 144 1.091771 AAAGCCCGCTGTCGATCATG 61.092 55.000 0.00 0.00 38.10 3.07
144 145 0.392998 AAAAGCCCGCTGTCGATCAT 60.393 50.000 0.00 0.00 38.10 2.45
145 146 0.605319 AAAAAGCCCGCTGTCGATCA 60.605 50.000 0.00 0.00 38.10 2.92
146 147 2.171635 AAAAAGCCCGCTGTCGATC 58.828 52.632 0.00 0.00 38.10 3.69
147 148 4.397348 AAAAAGCCCGCTGTCGAT 57.603 50.000 0.00 0.00 38.10 3.59
171 172 9.357652 CTCATTTCATGTCCGTATTCAATTTTT 57.642 29.630 0.00 0.00 0.00 1.94
172 173 8.522830 ACTCATTTCATGTCCGTATTCAATTTT 58.477 29.630 0.00 0.00 0.00 1.82
173 174 8.055279 ACTCATTTCATGTCCGTATTCAATTT 57.945 30.769 0.00 0.00 0.00 1.82
174 175 7.465916 CGACTCATTTCATGTCCGTATTCAATT 60.466 37.037 0.00 0.00 0.00 2.32
175 176 6.018751 CGACTCATTTCATGTCCGTATTCAAT 60.019 38.462 0.00 0.00 0.00 2.57
176 177 5.290885 CGACTCATTTCATGTCCGTATTCAA 59.709 40.000 0.00 0.00 0.00 2.69
177 178 4.803613 CGACTCATTTCATGTCCGTATTCA 59.196 41.667 0.00 0.00 0.00 2.57
178 179 4.209288 CCGACTCATTTCATGTCCGTATTC 59.791 45.833 0.00 0.00 0.00 1.75
179 180 4.119862 CCGACTCATTTCATGTCCGTATT 58.880 43.478 0.00 0.00 0.00 1.89
180 181 3.717707 CCGACTCATTTCATGTCCGTAT 58.282 45.455 0.00 0.00 0.00 3.06
181 182 2.737359 GCCGACTCATTTCATGTCCGTA 60.737 50.000 0.00 0.00 0.00 4.02
182 183 2.007049 GCCGACTCATTTCATGTCCGT 61.007 52.381 0.00 0.00 0.00 4.69
183 184 0.652592 GCCGACTCATTTCATGTCCG 59.347 55.000 0.00 0.00 0.00 4.79
184 185 0.652592 CGCCGACTCATTTCATGTCC 59.347 55.000 0.00 0.00 0.00 4.02
185 186 0.026803 GCGCCGACTCATTTCATGTC 59.973 55.000 0.00 0.00 0.00 3.06
186 187 0.673333 TGCGCCGACTCATTTCATGT 60.673 50.000 4.18 0.00 0.00 3.21
187 188 0.659427 ATGCGCCGACTCATTTCATG 59.341 50.000 4.18 0.00 0.00 3.07
188 189 1.064505 CAATGCGCCGACTCATTTCAT 59.935 47.619 4.18 0.00 28.77 2.57
189 190 0.447406 CAATGCGCCGACTCATTTCA 59.553 50.000 4.18 0.00 28.77 2.69
190 191 0.248215 CCAATGCGCCGACTCATTTC 60.248 55.000 4.18 0.00 28.77 2.17
191 192 1.656818 CCCAATGCGCCGACTCATTT 61.657 55.000 4.18 0.00 28.77 2.32
192 193 2.114670 CCCAATGCGCCGACTCATT 61.115 57.895 4.18 0.00 31.40 2.57
193 194 2.514592 CCCAATGCGCCGACTCAT 60.515 61.111 4.18 0.00 0.00 2.90
210 211 1.780860 GTATTTGAATCGGCAATGCGC 59.219 47.619 0.00 0.00 41.28 6.09
211 212 3.063670 TGTATTTGAATCGGCAATGCG 57.936 42.857 0.00 0.00 0.00 4.73
212 213 5.348451 AGTTTTGTATTTGAATCGGCAATGC 59.652 36.000 0.00 0.00 0.00 3.56
213 214 6.585702 TCAGTTTTGTATTTGAATCGGCAATG 59.414 34.615 0.00 0.00 0.00 2.82
214 215 6.686630 TCAGTTTTGTATTTGAATCGGCAAT 58.313 32.000 0.00 0.00 0.00 3.56
215 216 6.078202 TCAGTTTTGTATTTGAATCGGCAA 57.922 33.333 0.00 0.00 0.00 4.52
216 217 5.697473 TCAGTTTTGTATTTGAATCGGCA 57.303 34.783 0.00 0.00 0.00 5.69
217 218 4.558860 GCTCAGTTTTGTATTTGAATCGGC 59.441 41.667 0.00 0.00 0.00 5.54
218 219 4.788100 CGCTCAGTTTTGTATTTGAATCGG 59.212 41.667 0.00 0.00 0.00 4.18
219 220 4.788100 CCGCTCAGTTTTGTATTTGAATCG 59.212 41.667 0.00 0.00 0.00 3.34
220 221 5.795441 GTCCGCTCAGTTTTGTATTTGAATC 59.205 40.000 0.00 0.00 0.00 2.52
221 222 5.616866 CGTCCGCTCAGTTTTGTATTTGAAT 60.617 40.000 0.00 0.00 0.00 2.57
222 223 4.319190 CGTCCGCTCAGTTTTGTATTTGAA 60.319 41.667 0.00 0.00 0.00 2.69
223 224 3.185594 CGTCCGCTCAGTTTTGTATTTGA 59.814 43.478 0.00 0.00 0.00 2.69
224 225 3.479006 CGTCCGCTCAGTTTTGTATTTG 58.521 45.455 0.00 0.00 0.00 2.32
225 226 2.095919 GCGTCCGCTCAGTTTTGTATTT 60.096 45.455 4.10 0.00 38.26 1.40
226 227 1.463444 GCGTCCGCTCAGTTTTGTATT 59.537 47.619 4.10 0.00 38.26 1.89
227 228 1.076332 GCGTCCGCTCAGTTTTGTAT 58.924 50.000 4.10 0.00 38.26 2.29
228 229 0.947180 GGCGTCCGCTCAGTTTTGTA 60.947 55.000 11.82 0.00 41.60 2.41
229 230 2.251642 GGCGTCCGCTCAGTTTTGT 61.252 57.895 11.82 0.00 41.60 2.83
230 231 2.556287 GGCGTCCGCTCAGTTTTG 59.444 61.111 11.82 0.00 41.60 2.44
231 232 3.041940 CGGCGTCCGCTCAGTTTT 61.042 61.111 11.82 0.00 41.17 2.43
250 251 4.595538 TTTGAGTCGGCCGCACGT 62.596 61.111 23.51 3.80 34.94 4.49
251 252 4.072088 GTTTGAGTCGGCCGCACG 62.072 66.667 23.51 0.00 0.00 5.34
252 253 4.072088 CGTTTGAGTCGGCCGCAC 62.072 66.667 23.51 19.40 0.00 5.34
255 256 3.110178 GTCCGTTTGAGTCGGCCG 61.110 66.667 22.12 22.12 46.49 6.13
256 257 1.161563 TTTGTCCGTTTGAGTCGGCC 61.162 55.000 0.00 0.00 46.49 6.13
257 258 0.234884 CTTTGTCCGTTTGAGTCGGC 59.765 55.000 0.00 0.00 46.49 5.54
259 260 3.936902 TTTCTTTGTCCGTTTGAGTCG 57.063 42.857 0.00 0.00 0.00 4.18
260 261 6.721321 TGTATTTTCTTTGTCCGTTTGAGTC 58.279 36.000 0.00 0.00 0.00 3.36
261 262 6.687081 TGTATTTTCTTTGTCCGTTTGAGT 57.313 33.333 0.00 0.00 0.00 3.41
262 263 7.979115 TTTGTATTTTCTTTGTCCGTTTGAG 57.021 32.000 0.00 0.00 0.00 3.02
263 264 7.043059 GCATTTGTATTTTCTTTGTCCGTTTGA 60.043 33.333 0.00 0.00 0.00 2.69
264 265 7.062848 GCATTTGTATTTTCTTTGTCCGTTTG 58.937 34.615 0.00 0.00 0.00 2.93
265 266 6.074569 CGCATTTGTATTTTCTTTGTCCGTTT 60.075 34.615 0.00 0.00 0.00 3.60
266 267 5.401079 CGCATTTGTATTTTCTTTGTCCGTT 59.599 36.000 0.00 0.00 0.00 4.44
267 268 4.915085 CGCATTTGTATTTTCTTTGTCCGT 59.085 37.500 0.00 0.00 0.00 4.69
268 269 4.915085 ACGCATTTGTATTTTCTTTGTCCG 59.085 37.500 0.00 0.00 0.00 4.79
269 270 5.059221 CGACGCATTTGTATTTTCTTTGTCC 59.941 40.000 0.00 0.00 0.00 4.02
270 271 5.623673 ACGACGCATTTGTATTTTCTTTGTC 59.376 36.000 0.00 0.00 0.00 3.18
271 272 5.516090 ACGACGCATTTGTATTTTCTTTGT 58.484 33.333 0.00 0.00 0.00 2.83
272 273 6.432802 AACGACGCATTTGTATTTTCTTTG 57.567 33.333 0.00 0.00 0.00 2.77
273 274 5.338559 CGAACGACGCATTTGTATTTTCTTT 59.661 36.000 0.00 0.00 34.51 2.52
274 275 4.843984 CGAACGACGCATTTGTATTTTCTT 59.156 37.500 0.00 0.00 34.51 2.52
275 276 4.084223 ACGAACGACGCATTTGTATTTTCT 60.084 37.500 0.14 0.00 46.94 2.52
276 277 4.145997 ACGAACGACGCATTTGTATTTTC 58.854 39.130 0.14 0.00 46.94 2.29
277 278 4.136517 ACGAACGACGCATTTGTATTTT 57.863 36.364 0.14 0.00 46.94 1.82
278 279 3.799137 ACGAACGACGCATTTGTATTT 57.201 38.095 0.14 0.00 46.94 1.40
279 280 3.799137 AACGAACGACGCATTTGTATT 57.201 38.095 0.14 0.00 46.94 1.89
280 281 3.184783 TCAAACGAACGACGCATTTGTAT 59.815 39.130 15.43 0.00 46.94 2.29
281 282 2.538861 TCAAACGAACGACGCATTTGTA 59.461 40.909 15.43 6.72 46.94 2.41
282 283 1.328069 TCAAACGAACGACGCATTTGT 59.672 42.857 15.43 0.00 46.94 2.83
283 284 1.962547 CTCAAACGAACGACGCATTTG 59.037 47.619 0.14 1.22 46.94 2.32
284 285 1.595794 ACTCAAACGAACGACGCATTT 59.404 42.857 0.14 0.00 46.94 2.32
285 286 1.191647 GACTCAAACGAACGACGCATT 59.808 47.619 0.14 0.00 46.94 3.56
286 287 0.782384 GACTCAAACGAACGACGCAT 59.218 50.000 0.14 0.00 46.94 4.73
287 288 1.533988 CGACTCAAACGAACGACGCA 61.534 55.000 0.14 0.00 46.94 5.24
288 289 1.125266 CGACTCAAACGAACGACGC 59.875 57.895 0.14 0.00 46.94 5.19
290 291 1.485943 GGCGACTCAAACGAACGAC 59.514 57.895 0.14 0.00 0.00 4.34
291 292 1.662446 GGGCGACTCAAACGAACGA 60.662 57.895 0.14 0.00 0.00 3.85
292 293 1.289109 ATGGGCGACTCAAACGAACG 61.289 55.000 0.00 0.00 0.00 3.95
293 294 0.872388 AATGGGCGACTCAAACGAAC 59.128 50.000 0.00 0.00 0.00 3.95
294 295 0.871722 CAATGGGCGACTCAAACGAA 59.128 50.000 0.00 0.00 0.00 3.85
295 296 0.953471 CCAATGGGCGACTCAAACGA 60.953 55.000 0.00 0.00 0.00 3.85
296 297 0.953471 TCCAATGGGCGACTCAAACG 60.953 55.000 0.00 0.00 0.00 3.60
297 298 0.804989 CTCCAATGGGCGACTCAAAC 59.195 55.000 0.00 0.00 0.00 2.93
298 299 0.400213 ACTCCAATGGGCGACTCAAA 59.600 50.000 0.00 0.00 0.00 2.69
299 300 0.400213 AACTCCAATGGGCGACTCAA 59.600 50.000 0.00 0.00 0.00 3.02
300 301 0.321564 CAACTCCAATGGGCGACTCA 60.322 55.000 0.00 0.00 0.00 3.41
301 302 1.648467 GCAACTCCAATGGGCGACTC 61.648 60.000 0.00 0.00 0.00 3.36
302 303 1.675641 GCAACTCCAATGGGCGACT 60.676 57.895 0.00 0.00 0.00 4.18
303 304 1.648467 GAGCAACTCCAATGGGCGAC 61.648 60.000 0.00 0.00 0.00 5.19
304 305 1.377202 GAGCAACTCCAATGGGCGA 60.377 57.895 0.00 0.00 0.00 5.54
305 306 0.962356 AAGAGCAACTCCAATGGGCG 60.962 55.000 0.00 0.00 0.00 6.13
306 307 1.745653 GTAAGAGCAACTCCAATGGGC 59.254 52.381 0.00 0.00 0.00 5.36
307 308 2.369394 GGTAAGAGCAACTCCAATGGG 58.631 52.381 0.00 0.00 0.00 4.00
308 309 2.369394 GGGTAAGAGCAACTCCAATGG 58.631 52.381 0.00 0.00 0.00 3.16
309 310 2.009774 CGGGTAAGAGCAACTCCAATG 58.990 52.381 0.00 0.00 0.00 2.82
310 311 1.679032 GCGGGTAAGAGCAACTCCAAT 60.679 52.381 0.00 0.00 0.00 3.16
311 312 0.321298 GCGGGTAAGAGCAACTCCAA 60.321 55.000 0.00 0.00 0.00 3.53
312 313 1.295423 GCGGGTAAGAGCAACTCCA 59.705 57.895 0.00 0.00 0.00 3.86
313 314 1.810030 CGCGGGTAAGAGCAACTCC 60.810 63.158 0.00 0.00 0.00 3.85
314 315 2.453638 GCGCGGGTAAGAGCAACTC 61.454 63.158 8.83 0.00 36.91 3.01
315 316 2.434359 GCGCGGGTAAGAGCAACT 60.434 61.111 8.83 0.00 36.91 3.16
316 317 2.740826 TGCGCGGGTAAGAGCAAC 60.741 61.111 8.83 0.00 43.55 4.17
318 319 1.813753 GATTGCGCGGGTAAGAGCA 60.814 57.895 8.83 0.00 44.74 4.26
319 320 2.534903 GGATTGCGCGGGTAAGAGC 61.535 63.158 8.83 1.24 37.45 4.09
320 321 1.887707 GGGATTGCGCGGGTAAGAG 60.888 63.158 8.83 0.00 0.00 2.85
321 322 1.978455 ATGGGATTGCGCGGGTAAGA 61.978 55.000 8.83 0.00 0.00 2.10
322 323 1.101049 AATGGGATTGCGCGGGTAAG 61.101 55.000 8.83 0.00 0.00 2.34
323 324 1.077357 AATGGGATTGCGCGGGTAA 60.077 52.632 8.83 5.31 0.00 2.85
324 325 1.525077 GAATGGGATTGCGCGGGTA 60.525 57.895 8.83 0.00 0.00 3.69
325 326 2.828549 GAATGGGATTGCGCGGGT 60.829 61.111 8.83 0.00 0.00 5.28
326 327 0.817634 TAAGAATGGGATTGCGCGGG 60.818 55.000 8.83 0.00 0.00 6.13
327 328 1.238439 ATAAGAATGGGATTGCGCGG 58.762 50.000 8.83 0.00 0.00 6.46
377 379 4.088762 CACCGGCACACGTGATGC 62.089 66.667 25.01 25.19 42.24 3.91
378 380 2.664851 ACACCGGCACACGTGATG 60.665 61.111 25.01 17.22 42.24 3.07
507 514 2.147315 ATCCGATGGAGACGATGGCG 62.147 60.000 0.00 0.00 38.27 5.69
509 516 3.732169 CGAATATCCGATGGAGACGATGG 60.732 52.174 0.00 0.00 34.05 3.51
592 606 4.021925 GTCGCAGGGGAGGCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
741 755 2.163613 CACGATACCACTACTCACTGCA 59.836 50.000 0.00 0.00 0.00 4.41
742 756 2.798680 CACGATACCACTACTCACTGC 58.201 52.381 0.00 0.00 0.00 4.40
743 757 2.423892 AGCACGATACCACTACTCACTG 59.576 50.000 0.00 0.00 0.00 3.66
744 758 2.423892 CAGCACGATACCACTACTCACT 59.576 50.000 0.00 0.00 0.00 3.41
745 759 2.479730 CCAGCACGATACCACTACTCAC 60.480 54.545 0.00 0.00 0.00 3.51
746 760 1.749063 CCAGCACGATACCACTACTCA 59.251 52.381 0.00 0.00 0.00 3.41
776 790 1.812922 GTGGCCATGCTCTCACTCG 60.813 63.158 9.72 0.00 0.00 4.18
942 970 3.414700 CGGTGAGGTGCTGAACGC 61.415 66.667 0.00 0.00 39.77 4.84
995 1027 1.152440 AACCCACCCGCCATTTTCA 60.152 52.632 0.00 0.00 0.00 2.69
1014 1046 2.596338 AAAACAACCCCGCGGAGG 60.596 61.111 30.73 27.55 40.63 4.30
1026 1058 1.469308 GTCACCAACACCGACAAAACA 59.531 47.619 0.00 0.00 0.00 2.83
1413 1463 1.895020 TAGACGCGGCTGGGTTGAAT 61.895 55.000 28.40 0.00 41.99 2.57
1419 1469 2.202756 GACTTAGACGCGGCTGGG 60.203 66.667 28.40 19.48 0.00 4.45
1686 1736 0.036010 CCTTGGTCTGCGACAGGAAT 60.036 55.000 10.14 0.00 30.26 3.01
1878 1928 3.365265 GGCACCACCTTCTTGCCG 61.365 66.667 0.00 0.00 46.11 5.69
1938 1988 4.057428 GAGTCGAGCACCGTGCCT 62.057 66.667 19.96 9.69 46.52 4.75
2321 2371 2.079925 GCAGAGGGATAATCAATCGGC 58.920 52.381 0.00 0.00 35.21 5.54
2527 2590 5.390145 CCTTAAACCACAGGAAATTACGACG 60.390 44.000 0.00 0.00 30.81 5.12
2528 2591 5.471116 ACCTTAAACCACAGGAAATTACGAC 59.529 40.000 0.00 0.00 33.90 4.34
2580 2643 5.404946 GGCGTAGAGTAGATACAAACACAA 58.595 41.667 0.00 0.00 0.00 3.33
2583 2646 3.691118 ACGGCGTAGAGTAGATACAAACA 59.309 43.478 12.58 0.00 0.00 2.83
2589 2652 7.095060 CCAATTACTTACGGCGTAGAGTAGATA 60.095 40.741 25.78 18.64 0.00 1.98
2597 2660 3.242188 GCAACCAATTACTTACGGCGTAG 60.242 47.826 20.01 15.77 0.00 3.51
2669 2735 9.762381 AGGATTTCTGGTTGTAATATGGTAAAA 57.238 29.630 0.00 0.00 0.00 1.52
2739 2805 7.725142 ACGGCATTTTGTGTTATTAATTTTCG 58.275 30.769 0.00 0.00 0.00 3.46
2740 2806 8.166066 GGACGGCATTTTGTGTTATTAATTTTC 58.834 33.333 0.00 0.00 0.00 2.29
2772 2840 1.412710 TCTTCTGAACTGAACCGCACT 59.587 47.619 0.00 0.00 0.00 4.40
2795 2863 8.615705 TGATATCTCTTTGCCTAGGTCTCTATA 58.384 37.037 11.31 1.30 0.00 1.31
2796 2864 7.474445 TGATATCTCTTTGCCTAGGTCTCTAT 58.526 38.462 11.31 0.00 0.00 1.98
2865 2937 1.870402 CTTCGTGTTACACATGTGGCA 59.130 47.619 28.64 20.29 36.53 4.92
2877 2949 0.896940 TAGTCGGAGGGCTTCGTGTT 60.897 55.000 0.00 0.00 0.00 3.32
2881 2953 0.962489 ATCATAGTCGGAGGGCTTCG 59.038 55.000 0.00 0.00 0.00 3.79
2991 3064 6.908825 TGACAAATCCGAACTCTTTTTATGG 58.091 36.000 0.00 0.00 0.00 2.74
2992 3065 8.023128 ACATGACAAATCCGAACTCTTTTTATG 58.977 33.333 0.00 0.00 0.00 1.90
2993 3066 8.023128 CACATGACAAATCCGAACTCTTTTTAT 58.977 33.333 0.00 0.00 0.00 1.40
2994 3067 7.012894 ACACATGACAAATCCGAACTCTTTTTA 59.987 33.333 0.00 0.00 0.00 1.52
2995 3068 6.183360 ACACATGACAAATCCGAACTCTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
2996 3069 5.299279 ACACATGACAAATCCGAACTCTTTT 59.701 36.000 0.00 0.00 0.00 2.27
2997 3070 4.821805 ACACATGACAAATCCGAACTCTTT 59.178 37.500 0.00 0.00 0.00 2.52
2998 3071 4.389374 ACACATGACAAATCCGAACTCTT 58.611 39.130 0.00 0.00 0.00 2.85
2999 3072 4.008074 ACACATGACAAATCCGAACTCT 57.992 40.909 0.00 0.00 0.00 3.24
3000 3073 4.666655 CGAACACATGACAAATCCGAACTC 60.667 45.833 0.00 0.00 0.00 3.01
3001 3074 3.186409 CGAACACATGACAAATCCGAACT 59.814 43.478 0.00 0.00 0.00 3.01
3002 3075 3.059188 ACGAACACATGACAAATCCGAAC 60.059 43.478 0.00 0.00 0.00 3.95
3003 3076 3.059257 CACGAACACATGACAAATCCGAA 60.059 43.478 0.00 0.00 0.00 4.30
3004 3077 2.478514 CACGAACACATGACAAATCCGA 59.521 45.455 0.00 0.00 0.00 4.55
3005 3078 2.223144 ACACGAACACATGACAAATCCG 59.777 45.455 0.00 0.00 0.00 4.18
3006 3079 3.896648 ACACGAACACATGACAAATCC 57.103 42.857 0.00 0.00 0.00 3.01
3007 3080 5.619607 GTGTAACACGAACACATGACAAATC 59.380 40.000 0.00 0.00 45.26 2.17
3008 3081 5.507077 GTGTAACACGAACACATGACAAAT 58.493 37.500 0.00 0.00 45.26 2.32
3009 3082 4.899516 GTGTAACACGAACACATGACAAA 58.100 39.130 0.00 0.00 45.26 2.83
3010 3083 4.523853 GTGTAACACGAACACATGACAA 57.476 40.909 0.00 0.00 45.26 3.18
3023 3096 4.980434 AGATAAGTGTCACACGTGTAACAC 59.020 41.667 37.10 37.10 39.64 3.32
3024 3097 5.190992 AGATAAGTGTCACACGTGTAACA 57.809 39.130 20.77 20.77 39.64 2.41
3025 3098 9.167239 GATATAGATAAGTGTCACACGTGTAAC 57.833 37.037 22.90 18.94 39.64 2.50
3026 3099 8.895737 TGATATAGATAAGTGTCACACGTGTAA 58.104 33.333 22.90 3.27 39.64 2.41
3027 3100 8.441312 TGATATAGATAAGTGTCACACGTGTA 57.559 34.615 22.90 2.55 39.64 2.90
3028 3101 7.329588 TGATATAGATAAGTGTCACACGTGT 57.670 36.000 17.22 17.22 39.64 4.49
3029 3102 8.803201 ATTGATATAGATAAGTGTCACACGTG 57.197 34.615 15.48 15.48 39.64 4.49
3048 3121 9.131791 GCCTCTTTGGGTCTTTTTATATTGATA 57.868 33.333 0.00 0.00 36.00 2.15
3049 3122 7.619302 TGCCTCTTTGGGTCTTTTTATATTGAT 59.381 33.333 0.00 0.00 36.00 2.57
3050 3123 6.951198 TGCCTCTTTGGGTCTTTTTATATTGA 59.049 34.615 0.00 0.00 36.00 2.57
3051 3124 7.122650 TCTGCCTCTTTGGGTCTTTTTATATTG 59.877 37.037 0.00 0.00 36.00 1.90
3052 3125 7.182060 TCTGCCTCTTTGGGTCTTTTTATATT 58.818 34.615 0.00 0.00 36.00 1.28
3053 3126 6.731467 TCTGCCTCTTTGGGTCTTTTTATAT 58.269 36.000 0.00 0.00 36.00 0.86
3054 3127 6.134535 TCTGCCTCTTTGGGTCTTTTTATA 57.865 37.500 0.00 0.00 36.00 0.98
3055 3128 4.998051 TCTGCCTCTTTGGGTCTTTTTAT 58.002 39.130 0.00 0.00 36.00 1.40
3056 3129 4.447138 TCTGCCTCTTTGGGTCTTTTTA 57.553 40.909 0.00 0.00 36.00 1.52
3057 3130 3.312736 TCTGCCTCTTTGGGTCTTTTT 57.687 42.857 0.00 0.00 36.00 1.94
3058 3131 3.425659 GATCTGCCTCTTTGGGTCTTTT 58.574 45.455 0.00 0.00 36.00 2.27
3059 3132 2.291217 GGATCTGCCTCTTTGGGTCTTT 60.291 50.000 0.00 0.00 36.00 2.52
3060 3133 1.283321 GGATCTGCCTCTTTGGGTCTT 59.717 52.381 0.00 0.00 36.00 3.01
3061 3134 0.915364 GGATCTGCCTCTTTGGGTCT 59.085 55.000 0.00 0.00 36.00 3.85
3062 3135 0.620556 TGGATCTGCCTCTTTGGGTC 59.379 55.000 0.00 0.00 37.63 4.46
3063 3136 1.075601 TTGGATCTGCCTCTTTGGGT 58.924 50.000 0.00 0.00 37.63 4.51
3064 3137 2.449137 ATTGGATCTGCCTCTTTGGG 57.551 50.000 0.00 0.00 37.63 4.12
3065 3138 5.832060 AGATTAATTGGATCTGCCTCTTTGG 59.168 40.000 5.62 0.00 37.63 3.28
3066 3139 6.293298 CGAGATTAATTGGATCTGCCTCTTTG 60.293 42.308 9.96 0.00 34.13 2.77
3067 3140 5.762218 CGAGATTAATTGGATCTGCCTCTTT 59.238 40.000 9.96 0.00 34.13 2.52
3068 3141 5.303971 CGAGATTAATTGGATCTGCCTCTT 58.696 41.667 9.96 0.00 34.13 2.85
3069 3142 4.262808 CCGAGATTAATTGGATCTGCCTCT 60.263 45.833 9.96 0.00 34.13 3.69
3070 3143 3.999663 CCGAGATTAATTGGATCTGCCTC 59.000 47.826 9.96 0.00 34.13 4.70
3071 3144 3.808618 GCCGAGATTAATTGGATCTGCCT 60.809 47.826 9.96 0.00 34.13 4.75
3072 3145 2.485814 GCCGAGATTAATTGGATCTGCC 59.514 50.000 9.96 0.00 34.13 4.85
3073 3146 2.485814 GGCCGAGATTAATTGGATCTGC 59.514 50.000 9.96 8.37 34.13 4.26
3074 3147 3.743521 TGGCCGAGATTAATTGGATCTG 58.256 45.455 9.96 4.52 34.13 2.90
3075 3148 4.042062 TGATGGCCGAGATTAATTGGATCT 59.958 41.667 0.00 6.01 36.60 2.75
3076 3149 4.326826 TGATGGCCGAGATTAATTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
3077 3150 4.371624 TGATGGCCGAGATTAATTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
3078 3151 3.855255 TGATGGCCGAGATTAATTGGA 57.145 42.857 0.00 0.00 0.00 3.53
3079 3152 4.916983 TTTGATGGCCGAGATTAATTGG 57.083 40.909 0.00 0.00 0.00 3.16
3080 3153 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
3081 3154 6.266103 ACATGATTTGATGGCCGAGATTAATT 59.734 34.615 0.00 0.00 0.00 1.40
3082 3155 5.771666 ACATGATTTGATGGCCGAGATTAAT 59.228 36.000 0.00 0.00 0.00 1.40
3083 3156 5.132502 ACATGATTTGATGGCCGAGATTAA 58.867 37.500 0.00 0.00 0.00 1.40
3084 3157 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
3085 3158 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
3086 3159 3.219176 ACATGATTTGATGGCCGAGAT 57.781 42.857 0.00 0.00 0.00 2.75
3087 3160 2.715749 ACATGATTTGATGGCCGAGA 57.284 45.000 0.00 0.00 0.00 4.04
3088 3161 4.898829 TTAACATGATTTGATGGCCGAG 57.101 40.909 0.00 0.00 0.00 4.63
3089 3162 4.278170 GGATTAACATGATTTGATGGCCGA 59.722 41.667 0.00 0.00 0.00 5.54
3090 3163 4.037803 TGGATTAACATGATTTGATGGCCG 59.962 41.667 0.00 0.00 0.00 6.13
3091 3164 5.534207 TGGATTAACATGATTTGATGGCC 57.466 39.130 0.00 0.00 0.00 5.36
3092 3165 5.459762 CGTTGGATTAACATGATTTGATGGC 59.540 40.000 0.00 0.00 39.30 4.40
3093 3166 6.692681 GTCGTTGGATTAACATGATTTGATGG 59.307 38.462 0.00 0.00 39.30 3.51
3094 3167 6.692681 GGTCGTTGGATTAACATGATTTGATG 59.307 38.462 0.00 0.00 39.30 3.07
3095 3168 6.603201 AGGTCGTTGGATTAACATGATTTGAT 59.397 34.615 0.00 0.00 39.30 2.57
3096 3169 5.943416 AGGTCGTTGGATTAACATGATTTGA 59.057 36.000 0.00 0.00 39.30 2.69
3097 3170 6.194796 AGGTCGTTGGATTAACATGATTTG 57.805 37.500 0.00 0.00 39.30 2.32
3098 3171 7.280205 GTCTAGGTCGTTGGATTAACATGATTT 59.720 37.037 0.00 0.00 39.30 2.17
3099 3172 6.761714 GTCTAGGTCGTTGGATTAACATGATT 59.238 38.462 0.00 0.00 39.30 2.57
3100 3173 6.098409 AGTCTAGGTCGTTGGATTAACATGAT 59.902 38.462 0.00 0.00 39.30 2.45
3101 3174 5.421056 AGTCTAGGTCGTTGGATTAACATGA 59.579 40.000 0.00 0.00 39.30 3.07
3102 3175 5.520288 CAGTCTAGGTCGTTGGATTAACATG 59.480 44.000 0.00 0.00 39.30 3.21
3103 3176 5.661458 CAGTCTAGGTCGTTGGATTAACAT 58.339 41.667 0.00 0.00 39.30 2.71
3104 3177 4.619863 GCAGTCTAGGTCGTTGGATTAACA 60.620 45.833 0.00 0.00 39.30 2.41
3105 3178 3.864003 GCAGTCTAGGTCGTTGGATTAAC 59.136 47.826 0.00 0.00 35.90 2.01
3106 3179 3.767673 AGCAGTCTAGGTCGTTGGATTAA 59.232 43.478 0.00 0.00 0.00 1.40
3107 3180 3.362706 AGCAGTCTAGGTCGTTGGATTA 58.637 45.455 0.00 0.00 0.00 1.75
3108 3181 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
3109 3182 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
3110 3183 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
3111 3184 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
3112 3185 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
3113 3186 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
3114 3187 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
3115 3188 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
3116 3189 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
3117 3190 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
3118 3191 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
3119 3192 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
3120 3193 2.231235 TGCTCGACATTGAAGCAGTCTA 59.769 45.455 8.38 0.00 0.00 2.59
3121 3194 1.001293 TGCTCGACATTGAAGCAGTCT 59.999 47.619 8.38 0.00 0.00 3.24
3122 3195 1.127582 GTGCTCGACATTGAAGCAGTC 59.872 52.381 11.48 0.00 36.10 3.51
3123 3196 1.151668 GTGCTCGACATTGAAGCAGT 58.848 50.000 11.48 0.00 36.10 4.40
3124 3197 1.392853 GAGTGCTCGACATTGAAGCAG 59.607 52.381 11.48 0.00 36.10 4.24
3125 3198 1.270252 TGAGTGCTCGACATTGAAGCA 60.270 47.619 8.38 8.38 0.00 3.91
3126 3199 1.432514 TGAGTGCTCGACATTGAAGC 58.567 50.000 0.00 0.00 0.00 3.86
3127 3200 2.802247 TGTTGAGTGCTCGACATTGAAG 59.198 45.455 16.03 0.00 46.09 3.02
3128 3201 2.832563 TGTTGAGTGCTCGACATTGAA 58.167 42.857 16.03 0.00 46.09 2.69
3129 3202 2.524569 TGTTGAGTGCTCGACATTGA 57.475 45.000 16.03 0.00 46.09 2.57
3134 3207 0.928229 AAACGTGTTGAGTGCTCGAC 59.072 50.000 11.61 11.61 42.86 4.20
3135 3208 2.390938 CTAAACGTGTTGAGTGCTCGA 58.609 47.619 0.00 0.00 0.00 4.04
3136 3209 1.136611 GCTAAACGTGTTGAGTGCTCG 60.137 52.381 0.00 0.00 0.00 5.03
3137 3210 1.136611 CGCTAAACGTGTTGAGTGCTC 60.137 52.381 0.00 0.00 36.87 4.26
3138 3211 0.859232 CGCTAAACGTGTTGAGTGCT 59.141 50.000 0.00 0.00 36.87 4.40
3139 3212 3.345087 CGCTAAACGTGTTGAGTGC 57.655 52.632 0.00 0.00 36.87 4.40
3150 3223 5.220024 GCATGAAATTAACTGCACGCTAAAC 60.220 40.000 0.00 0.00 34.77 2.01
3151 3224 4.856487 GCATGAAATTAACTGCACGCTAAA 59.144 37.500 0.00 0.00 34.77 1.85
3152 3225 4.411327 GCATGAAATTAACTGCACGCTAA 58.589 39.130 0.00 0.00 34.77 3.09
3153 3226 3.181501 GGCATGAAATTAACTGCACGCTA 60.182 43.478 0.00 0.00 36.34 4.26
3154 3227 2.415893 GGCATGAAATTAACTGCACGCT 60.416 45.455 0.00 0.00 36.34 5.07
3155 3228 1.919918 GGCATGAAATTAACTGCACGC 59.080 47.619 0.00 0.00 36.34 5.34
3156 3229 3.214697 TGGCATGAAATTAACTGCACG 57.785 42.857 0.00 0.00 36.34 5.34
3157 3230 5.921004 TTTTGGCATGAAATTAACTGCAC 57.079 34.783 0.00 0.53 36.34 4.57
3158 3231 8.613060 TTATTTTTGGCATGAAATTAACTGCA 57.387 26.923 12.62 0.00 36.34 4.41
3208 3281 9.712305 GCATGCGGATATTAAGTAGGATATTAT 57.288 33.333 0.00 0.00 0.00 1.28
3209 3282 8.700973 TGCATGCGGATATTAAGTAGGATATTA 58.299 33.333 14.09 0.00 0.00 0.98
3210 3283 7.495934 GTGCATGCGGATATTAAGTAGGATATT 59.504 37.037 14.09 0.00 0.00 1.28
3211 3284 6.986817 GTGCATGCGGATATTAAGTAGGATAT 59.013 38.462 14.09 0.00 0.00 1.63
3212 3285 6.154534 AGTGCATGCGGATATTAAGTAGGATA 59.845 38.462 14.09 0.00 0.00 2.59
3213 3286 5.046304 AGTGCATGCGGATATTAAGTAGGAT 60.046 40.000 14.09 0.00 0.00 3.24
3214 3287 4.283467 AGTGCATGCGGATATTAAGTAGGA 59.717 41.667 14.09 0.00 0.00 2.94
3215 3288 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
3216 3289 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
3217 3290 9.884636 ATATTAAGTGCATGCGGATATTAAGTA 57.115 29.630 14.09 8.17 0.00 2.24
3218 3291 8.792830 ATATTAAGTGCATGCGGATATTAAGT 57.207 30.769 14.09 4.58 0.00 2.24
3220 3293 9.884636 AGTATATTAAGTGCATGCGGATATTAA 57.115 29.630 14.09 12.83 0.00 1.40
3221 3294 9.884636 AAGTATATTAAGTGCATGCGGATATTA 57.115 29.630 14.09 4.65 0.00 0.98
3222 3295 8.792830 AAGTATATTAAGTGCATGCGGATATT 57.207 30.769 14.09 5.62 0.00 1.28
3223 3296 7.495934 GGAAGTATATTAAGTGCATGCGGATAT 59.504 37.037 14.09 13.06 0.00 1.63
3224 3297 6.816640 GGAAGTATATTAAGTGCATGCGGATA 59.183 38.462 14.09 6.94 0.00 2.59
3225 3298 5.643777 GGAAGTATATTAAGTGCATGCGGAT 59.356 40.000 14.09 3.59 0.00 4.18
3226 3299 4.994852 GGAAGTATATTAAGTGCATGCGGA 59.005 41.667 14.09 0.00 0.00 5.54
3227 3300 4.754618 TGGAAGTATATTAAGTGCATGCGG 59.245 41.667 14.09 0.00 0.00 5.69
3228 3301 5.922739 TGGAAGTATATTAAGTGCATGCG 57.077 39.130 14.09 0.00 0.00 4.73
3239 3312 9.515020 CAATGCACGTTAATTTGGAAGTATATT 57.485 29.630 0.00 0.00 0.00 1.28
3240 3313 7.647715 GCAATGCACGTTAATTTGGAAGTATAT 59.352 33.333 0.00 0.00 0.00 0.86
3241 3314 6.970043 GCAATGCACGTTAATTTGGAAGTATA 59.030 34.615 0.00 0.00 0.00 1.47
3242 3315 5.804979 GCAATGCACGTTAATTTGGAAGTAT 59.195 36.000 0.00 0.00 0.00 2.12
3243 3316 5.157781 GCAATGCACGTTAATTTGGAAGTA 58.842 37.500 0.00 0.00 0.00 2.24
3244 3317 3.987220 GCAATGCACGTTAATTTGGAAGT 59.013 39.130 0.00 0.00 0.00 3.01
3245 3318 3.986572 TGCAATGCACGTTAATTTGGAAG 59.013 39.130 2.72 0.00 31.71 3.46
3246 3319 3.982475 TGCAATGCACGTTAATTTGGAA 58.018 36.364 2.72 0.00 31.71 3.53
3247 3320 3.650070 TGCAATGCACGTTAATTTGGA 57.350 38.095 2.72 0.00 31.71 3.53
3259 3332 1.876156 TCAATGTGTACGTGCAATGCA 59.124 42.857 8.25 2.72 35.60 3.96
3260 3333 2.095768 AGTCAATGTGTACGTGCAATGC 60.096 45.455 8.25 0.00 0.00 3.56
3261 3334 3.811722 AGTCAATGTGTACGTGCAATG 57.188 42.857 8.25 8.35 0.00 2.82
3262 3335 4.388773 CACTAGTCAATGTGTACGTGCAAT 59.611 41.667 8.25 1.77 0.00 3.56
3263 3336 3.738791 CACTAGTCAATGTGTACGTGCAA 59.261 43.478 8.25 0.00 0.00 4.08
3264 3337 3.004944 TCACTAGTCAATGTGTACGTGCA 59.995 43.478 0.82 0.82 35.82 4.57
3265 3338 3.571571 TCACTAGTCAATGTGTACGTGC 58.428 45.455 0.00 0.00 35.82 5.34
3266 3339 4.166523 CCTCACTAGTCAATGTGTACGTG 58.833 47.826 0.00 0.00 35.82 4.49
3267 3340 3.192844 CCCTCACTAGTCAATGTGTACGT 59.807 47.826 0.00 0.00 35.82 3.57
3268 3341 3.192844 ACCCTCACTAGTCAATGTGTACG 59.807 47.826 0.00 0.00 35.82 3.67
3269 3342 4.463186 AGACCCTCACTAGTCAATGTGTAC 59.537 45.833 0.00 0.00 35.38 2.90
3270 3343 4.673968 AGACCCTCACTAGTCAATGTGTA 58.326 43.478 0.00 0.00 35.38 2.90
3271 3344 3.511477 AGACCCTCACTAGTCAATGTGT 58.489 45.455 0.00 0.00 35.38 3.72
3272 3345 5.661056 TTAGACCCTCACTAGTCAATGTG 57.339 43.478 0.00 0.00 35.38 3.21
3273 3346 6.681729 TTTTAGACCCTCACTAGTCAATGT 57.318 37.500 0.00 0.00 35.38 2.71
3274 3347 7.118390 CACTTTTTAGACCCTCACTAGTCAATG 59.882 40.741 0.00 0.00 35.38 2.82
3275 3348 7.016268 TCACTTTTTAGACCCTCACTAGTCAAT 59.984 37.037 0.00 0.00 35.38 2.57
3276 3349 6.325545 TCACTTTTTAGACCCTCACTAGTCAA 59.674 38.462 0.00 0.00 35.38 3.18
3277 3350 5.836898 TCACTTTTTAGACCCTCACTAGTCA 59.163 40.000 0.00 0.00 35.38 3.41
3278 3351 6.157904 GTCACTTTTTAGACCCTCACTAGTC 58.842 44.000 0.00 0.00 0.00 2.59
3279 3352 5.601313 TGTCACTTTTTAGACCCTCACTAGT 59.399 40.000 0.00 0.00 33.89 2.57
3280 3353 6.097915 TGTCACTTTTTAGACCCTCACTAG 57.902 41.667 0.00 0.00 33.89 2.57
3281 3354 6.126997 TGTTGTCACTTTTTAGACCCTCACTA 60.127 38.462 0.00 0.00 33.89 2.74
3282 3355 5.123936 GTTGTCACTTTTTAGACCCTCACT 58.876 41.667 0.00 0.00 33.89 3.41
3283 3356 4.879545 TGTTGTCACTTTTTAGACCCTCAC 59.120 41.667 0.00 0.00 33.89 3.51
3284 3357 5.105567 TGTTGTCACTTTTTAGACCCTCA 57.894 39.130 0.00 0.00 33.89 3.86
3285 3358 6.445357 TTTGTTGTCACTTTTTAGACCCTC 57.555 37.500 0.00 0.00 33.89 4.30
3286 3359 6.350696 GGTTTTGTTGTCACTTTTTAGACCCT 60.351 38.462 0.00 0.00 33.89 4.34
3287 3360 5.808540 GGTTTTGTTGTCACTTTTTAGACCC 59.191 40.000 0.00 0.00 33.89 4.46
3288 3361 6.391537 TGGTTTTGTTGTCACTTTTTAGACC 58.608 36.000 0.00 0.00 33.89 3.85
3289 3362 6.034577 GCTGGTTTTGTTGTCACTTTTTAGAC 59.965 38.462 0.00 0.00 35.37 2.59
3290 3363 6.096695 GCTGGTTTTGTTGTCACTTTTTAGA 58.903 36.000 0.00 0.00 0.00 2.10
3291 3364 5.004345 CGCTGGTTTTGTTGTCACTTTTTAG 59.996 40.000 0.00 0.00 0.00 1.85
3292 3365 4.859798 CGCTGGTTTTGTTGTCACTTTTTA 59.140 37.500 0.00 0.00 0.00 1.52
3293 3366 3.677596 CGCTGGTTTTGTTGTCACTTTTT 59.322 39.130 0.00 0.00 0.00 1.94
3294 3367 3.057174 TCGCTGGTTTTGTTGTCACTTTT 60.057 39.130 0.00 0.00 0.00 2.27
3295 3368 2.490115 TCGCTGGTTTTGTTGTCACTTT 59.510 40.909 0.00 0.00 0.00 2.66
3296 3369 2.088423 TCGCTGGTTTTGTTGTCACTT 58.912 42.857 0.00 0.00 0.00 3.16
3297 3370 1.400494 GTCGCTGGTTTTGTTGTCACT 59.600 47.619 0.00 0.00 0.00 3.41
3298 3371 1.131504 TGTCGCTGGTTTTGTTGTCAC 59.868 47.619 0.00 0.00 0.00 3.67
3299 3372 1.131504 GTGTCGCTGGTTTTGTTGTCA 59.868 47.619 0.00 0.00 0.00 3.58
3300 3373 1.822581 GTGTCGCTGGTTTTGTTGTC 58.177 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.