Multiple sequence alignment - TraesCS2D01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G129800 chr2D 100.000 4684 0 0 1 4684 75555381 75550698 0.000000e+00 8650.0
1 TraesCS2D01G129800 chr2D 90.698 2580 184 21 1245 3782 75656608 75659173 0.000000e+00 3384.0
2 TraesCS2D01G129800 chr2D 88.174 2224 155 48 1616 3784 75558266 75556096 0.000000e+00 2551.0
3 TraesCS2D01G129800 chr2D 89.911 337 22 12 866 1197 75558958 75558629 1.560000e-114 424.0
4 TraesCS2D01G129800 chr2D 85.163 337 27 7 3915 4229 75556071 75555736 1.630000e-84 324.0
5 TraesCS2D01G129800 chr2D 93.064 173 7 3 982 1149 75656230 75656402 1.010000e-61 248.0
6 TraesCS2D01G129800 chr2D 97.260 73 2 0 4499 4571 75550813 75550741 1.770000e-24 124.0
7 TraesCS2D01G129800 chr2D 97.260 73 2 0 4569 4641 75550883 75550811 1.770000e-24 124.0
8 TraesCS2D01G129800 chr2D 90.000 70 2 2 1196 1260 75656520 75656589 8.350000e-13 86.1
9 TraesCS2D01G129800 chr2D 94.000 50 1 2 4496 4544 476855994 476856042 1.810000e-09 75.0
10 TraesCS2D01G129800 chr2A 92.717 3405 157 39 1190 4560 75313720 75310373 0.000000e+00 4830.0
11 TraesCS2D01G129800 chr2A 88.281 2210 177 48 1616 3783 75318184 75316015 0.000000e+00 2571.0
12 TraesCS2D01G129800 chr2A 93.927 741 39 4 413 1152 75314551 75313816 0.000000e+00 1114.0
13 TraesCS2D01G129800 chr2A 87.761 335 23 9 866 1197 75318885 75318566 4.430000e-100 375.0
14 TraesCS2D01G129800 chr2A 82.875 327 32 12 3915 4219 75315986 75315662 5.970000e-69 272.0
15 TraesCS2D01G129800 chr2A 89.189 148 14 2 272 417 75314879 75314732 2.880000e-42 183.0
16 TraesCS2D01G129800 chr2A 89.655 116 10 2 4569 4684 75310434 75310321 3.780000e-31 147.0
17 TraesCS2D01G129800 chr2A 94.667 75 4 0 7 81 75315294 75315220 2.960000e-22 117.0
18 TraesCS2D01G129800 chr2A 95.714 70 3 0 98 167 75315166 75315097 3.830000e-21 113.0
19 TraesCS2D01G129800 chr2A 90.000 50 5 0 4502 4551 28799139 28799090 1.090000e-06 65.8
20 TraesCS2D01G129800 chr2B 94.011 2087 87 17 776 2842 115903985 115901917 0.000000e+00 3127.0
21 TraesCS2D01G129800 chr2B 87.506 2113 182 42 1640 3716 115970519 115968453 0.000000e+00 2364.0
22 TraesCS2D01G129800 chr2B 89.586 701 66 5 98 795 115966726 115966030 0.000000e+00 883.0
23 TraesCS2D01G129800 chr2B 94.105 458 23 2 2940 3397 115901880 115901427 0.000000e+00 693.0
24 TraesCS2D01G129800 chr2B 92.937 269 13 2 876 1143 115971530 115971267 2.040000e-103 387.0
25 TraesCS2D01G129800 chr2B 82.426 404 35 16 3383 3784 115895101 115894732 2.100000e-83 320.0
26 TraesCS2D01G129800 chr2B 77.904 439 53 17 3915 4320 115894707 115894280 2.820000e-57 233.0
27 TraesCS2D01G129800 chr2B 90.278 72 5 1 4613 4684 115888371 115888302 4.990000e-15 93.5
28 TraesCS2D01G129800 chr2B 100.000 31 0 0 2893 2923 115901889 115901919 1.820000e-04 58.4
29 TraesCS2D01G129800 chr5B 94.915 59 3 0 3855 3913 272665715 272665773 4.990000e-15 93.5
30 TraesCS2D01G129800 chr5B 93.617 47 3 0 4565 4611 546802656 546802702 2.340000e-08 71.3
31 TraesCS2D01G129800 chr5B 93.617 47 3 0 4565 4611 546803515 546803561 2.340000e-08 71.3
32 TraesCS2D01G129800 chr5B 93.617 47 3 0 4565 4611 546804374 546804420 2.340000e-08 71.3
33 TraesCS2D01G129800 chr5D 93.220 59 3 1 3855 3913 463617579 463617636 8.350000e-13 86.1
34 TraesCS2D01G129800 chr4D 95.833 48 1 1 4572 4618 313885377 313885330 5.030000e-10 76.8
35 TraesCS2D01G129800 chr1D 100.000 40 0 0 4502 4541 508386 508425 1.810000e-09 75.0
36 TraesCS2D01G129800 chr1D 100.000 39 0 0 4502 4540 470770782 470770744 6.500000e-09 73.1
37 TraesCS2D01G129800 chr3B 100.000 38 0 0 4573 4610 117563201 117563238 2.340000e-08 71.3
38 TraesCS2D01G129800 chr3B 100.000 38 0 0 4504 4541 666473385 666473422 2.340000e-08 71.3
39 TraesCS2D01G129800 chr3B 100.000 37 0 0 4574 4610 263278127 263278091 8.410000e-08 69.4
40 TraesCS2D01G129800 chr3A 93.617 47 2 1 4572 4618 20507171 20507216 8.410000e-08 69.4
41 TraesCS2D01G129800 chr3D 97.436 39 1 0 4502 4540 219567620 219567582 3.020000e-07 67.6
42 TraesCS2D01G129800 chr6A 90.000 50 4 1 4492 4541 98801987 98802035 3.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G129800 chr2D 75550698 75555381 4683 True 8650.000000 8650 100.000000 1 4684 1 chr2D.!!$R1 4683
1 TraesCS2D01G129800 chr2D 75656230 75659173 2943 False 1239.366667 3384 91.254000 982 3782 3 chr2D.!!$F2 2800
2 TraesCS2D01G129800 chr2D 75555736 75558958 3222 True 1099.666667 2551 87.749333 866 4229 3 chr2D.!!$R3 3363
3 TraesCS2D01G129800 chr2A 75310321 75318885 8564 True 1080.222222 4830 90.531778 7 4684 9 chr2A.!!$R2 4677
4 TraesCS2D01G129800 chr2B 115901427 115903985 2558 True 1910.000000 3127 94.058000 776 3397 2 chr2B.!!$R3 2621
5 TraesCS2D01G129800 chr2B 115966030 115971530 5500 True 1211.333333 2364 90.009667 98 3716 3 chr2B.!!$R4 3618
6 TraesCS2D01G129800 chr2B 115894280 115895101 821 True 276.500000 320 80.165000 3383 4320 2 chr2B.!!$R2 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 693 0.029567 CGACCTAAGCTGCCGACTAG 59.970 60.000 0.0 0.0 0.00 2.57 F
694 695 0.818296 ACCTAAGCTGCCGACTAGTG 59.182 55.000 0.0 0.0 0.00 2.74 F
695 696 0.818296 CCTAAGCTGCCGACTAGTGT 59.182 55.000 0.0 0.0 0.00 3.55 F
699 700 0.969894 AGCTGCCGACTAGTGTTTCT 59.030 50.000 0.0 0.0 0.00 2.52 F
772 773 1.166531 GCTTCCTGCAAACGTGGACT 61.167 55.000 0.0 0.0 42.31 3.85 F
774 775 1.264288 CTTCCTGCAAACGTGGACTTC 59.736 52.381 0.0 0.0 0.00 3.01 F
2539 7867 1.270785 TGTTGATCTTCCGCTTCAGCA 60.271 47.619 0.0 0.0 42.21 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 7752 0.457851 CTTTGTGTCGCCACCCAAAA 59.542 50.000 0.00 0.00 41.09 2.44 R
2740 8080 6.054295 TCCCTTCACAAATTTTGGAAACATG 58.946 36.000 13.42 0.00 42.32 3.21 R
2747 8087 4.935352 TGTCTCCCTTCACAAATTTTGG 57.065 40.909 13.42 3.24 34.12 3.28 R
2771 8111 1.134580 GCATGTTCTAGAGCAGGCAGA 60.135 52.381 32.44 3.17 46.07 4.26 R
2879 8220 7.515643 CAAACGGTACTTCGAGAAAATAATGT 58.484 34.615 0.00 0.00 0.00 2.71 R
3126 8477 3.778075 TGGAAGTTAGGTAAGCATGCCTA 59.222 43.478 15.66 2.10 42.31 3.93 R
4254 9724 0.257905 GAGGCCGGGGATTTAACCTT 59.742 55.000 2.18 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.568696 CACTAGACAGGATGACGTGG 57.431 55.000 0.00 0.00 39.69 4.94
20 21 0.818296 ACTAGACAGGATGACGTGGC 59.182 55.000 0.00 0.00 39.69 5.01
21 22 0.817654 CTAGACAGGATGACGTGGCA 59.182 55.000 0.00 0.00 41.74 4.92
22 23 0.530744 TAGACAGGATGACGTGGCAC 59.469 55.000 7.79 7.79 41.74 5.01
23 24 2.048222 ACAGGATGACGTGGCACG 60.048 61.111 35.89 35.89 44.10 5.34
24 25 2.261361 CAGGATGACGTGGCACGA 59.739 61.111 42.65 24.58 45.86 4.35
25 26 2.094659 CAGGATGACGTGGCACGAC 61.095 63.158 42.65 36.08 45.86 4.34
30 31 3.824621 TGACGTGGCACGACATAAT 57.175 47.368 42.65 22.17 46.05 1.28
31 32 1.355005 TGACGTGGCACGACATAATG 58.645 50.000 42.65 14.84 46.05 1.90
32 33 0.650512 GACGTGGCACGACATAATGG 59.349 55.000 42.65 14.09 46.05 3.16
33 34 0.248012 ACGTGGCACGACATAATGGA 59.752 50.000 42.65 0.00 46.05 3.41
34 35 1.134521 ACGTGGCACGACATAATGGAT 60.135 47.619 42.65 16.48 46.05 3.41
35 36 1.526887 CGTGGCACGACATAATGGATC 59.473 52.381 34.85 0.00 46.05 3.36
36 37 2.560504 GTGGCACGACATAATGGATCA 58.439 47.619 0.00 0.00 0.00 2.92
37 38 2.287915 GTGGCACGACATAATGGATCAC 59.712 50.000 0.00 0.00 0.00 3.06
38 39 2.093235 TGGCACGACATAATGGATCACA 60.093 45.455 0.00 0.00 0.00 3.58
39 40 2.942376 GGCACGACATAATGGATCACAA 59.058 45.455 0.00 0.00 0.00 3.33
40 41 3.376859 GGCACGACATAATGGATCACAAA 59.623 43.478 0.00 0.00 0.00 2.83
41 42 4.036734 GGCACGACATAATGGATCACAAAT 59.963 41.667 0.00 0.00 0.00 2.32
42 43 5.238432 GGCACGACATAATGGATCACAAATA 59.762 40.000 0.00 0.00 0.00 1.40
43 44 6.365839 GCACGACATAATGGATCACAAATAG 58.634 40.000 0.00 0.00 0.00 1.73
44 45 6.202762 GCACGACATAATGGATCACAAATAGA 59.797 38.462 0.00 0.00 0.00 1.98
45 46 7.567571 CACGACATAATGGATCACAAATAGAC 58.432 38.462 0.00 0.00 0.00 2.59
46 47 7.224557 CACGACATAATGGATCACAAATAGACA 59.775 37.037 0.00 0.00 0.00 3.41
47 48 7.439356 ACGACATAATGGATCACAAATAGACAG 59.561 37.037 0.00 0.00 0.00 3.51
48 49 7.653311 CGACATAATGGATCACAAATAGACAGA 59.347 37.037 0.00 0.00 0.00 3.41
49 50 9.330063 GACATAATGGATCACAAATAGACAGAA 57.670 33.333 0.00 0.00 0.00 3.02
50 51 9.857656 ACATAATGGATCACAAATAGACAGAAT 57.142 29.630 0.00 0.00 0.00 2.40
54 55 9.685276 AATGGATCACAAATAGACAGAATAACA 57.315 29.630 0.00 0.00 0.00 2.41
55 56 9.857656 ATGGATCACAAATAGACAGAATAACAT 57.142 29.630 0.00 0.00 0.00 2.71
83 84 9.267084 GATTAAATTACAGAAGAGCCTAAGAGG 57.733 37.037 0.00 0.00 38.80 3.69
84 85 6.875972 AAATTACAGAAGAGCCTAAGAGGA 57.124 37.500 0.00 0.00 37.67 3.71
85 86 7.444703 AAATTACAGAAGAGCCTAAGAGGAT 57.555 36.000 0.00 0.00 37.67 3.24
86 87 8.554490 AAATTACAGAAGAGCCTAAGAGGATA 57.446 34.615 0.00 0.00 37.67 2.59
87 88 8.554490 AATTACAGAAGAGCCTAAGAGGATAA 57.446 34.615 0.00 0.00 37.67 1.75
88 89 7.589958 TTACAGAAGAGCCTAAGAGGATAAG 57.410 40.000 0.00 0.00 37.67 1.73
89 90 4.898861 ACAGAAGAGCCTAAGAGGATAAGG 59.101 45.833 0.00 0.00 37.67 2.69
98 99 6.524101 CCTAAGAGGATAAGGCTAGCTTAG 57.476 45.833 15.72 10.59 37.67 2.18
99 100 5.420739 CCTAAGAGGATAAGGCTAGCTTAGG 59.579 48.000 15.72 15.42 43.81 2.69
100 101 4.750833 AGAGGATAAGGCTAGCTTAGGA 57.249 45.455 15.72 0.00 0.00 2.94
101 102 4.672899 AGAGGATAAGGCTAGCTTAGGAG 58.327 47.826 15.72 0.00 0.00 3.69
173 174 2.503061 CCATCAGGCCACGAGGAG 59.497 66.667 5.01 0.00 36.89 3.69
174 175 2.202987 CATCAGGCCACGAGGAGC 60.203 66.667 5.01 0.00 36.89 4.70
175 176 2.685017 ATCAGGCCACGAGGAGCA 60.685 61.111 5.01 0.00 36.89 4.26
176 177 2.729479 ATCAGGCCACGAGGAGCAG 61.729 63.158 5.01 0.00 36.89 4.24
179 180 4.828925 GGCCACGAGGAGCAGCTC 62.829 72.222 14.69 14.69 36.89 4.09
204 205 3.711782 CCTCCCCTTCCTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
205 206 2.040359 CTCCCCTTCCTCCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
206 207 2.543637 TCCCCTTCCTCCCCCTCT 60.544 66.667 0.00 0.00 0.00 3.69
207 208 2.040359 CCCCTTCCTCCCCCTCTC 60.040 72.222 0.00 0.00 0.00 3.20
208 209 2.652113 CCCCTTCCTCCCCCTCTCT 61.652 68.421 0.00 0.00 0.00 3.10
209 210 1.074850 CCCTTCCTCCCCCTCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
210 211 1.598856 CCCTTCCTCCCCCTCTCTCT 61.599 65.000 0.00 0.00 0.00 3.10
211 212 0.341609 CCTTCCTCCCCCTCTCTCTT 59.658 60.000 0.00 0.00 0.00 2.85
212 213 1.274126 CCTTCCTCCCCCTCTCTCTTT 60.274 57.143 0.00 0.00 0.00 2.52
213 214 2.556766 CTTCCTCCCCCTCTCTCTTTT 58.443 52.381 0.00 0.00 0.00 2.27
214 215 2.743131 TCCTCCCCCTCTCTCTTTTT 57.257 50.000 0.00 0.00 0.00 1.94
215 216 2.552367 TCCTCCCCCTCTCTCTTTTTC 58.448 52.381 0.00 0.00 0.00 2.29
216 217 1.562008 CCTCCCCCTCTCTCTTTTTCC 59.438 57.143 0.00 0.00 0.00 3.13
217 218 2.556766 CTCCCCCTCTCTCTTTTTCCT 58.443 52.381 0.00 0.00 0.00 3.36
218 219 2.503765 CTCCCCCTCTCTCTTTTTCCTC 59.496 54.545 0.00 0.00 0.00 3.71
219 220 2.158004 TCCCCCTCTCTCTTTTTCCTCA 60.158 50.000 0.00 0.00 0.00 3.86
220 221 2.644798 CCCCCTCTCTCTTTTTCCTCAA 59.355 50.000 0.00 0.00 0.00 3.02
221 222 3.268072 CCCCCTCTCTCTTTTTCCTCAAT 59.732 47.826 0.00 0.00 0.00 2.57
222 223 4.268359 CCCCTCTCTCTTTTTCCTCAATG 58.732 47.826 0.00 0.00 0.00 2.82
223 224 4.018960 CCCCTCTCTCTTTTTCCTCAATGA 60.019 45.833 0.00 0.00 0.00 2.57
224 225 4.940654 CCCTCTCTCTTTTTCCTCAATGAC 59.059 45.833 0.00 0.00 0.00 3.06
225 226 5.280419 CCCTCTCTCTTTTTCCTCAATGACT 60.280 44.000 0.00 0.00 0.00 3.41
226 227 6.237154 CCTCTCTCTTTTTCCTCAATGACTT 58.763 40.000 0.00 0.00 0.00 3.01
227 228 6.371271 CCTCTCTCTTTTTCCTCAATGACTTC 59.629 42.308 0.00 0.00 0.00 3.01
228 229 6.830912 TCTCTCTTTTTCCTCAATGACTTCA 58.169 36.000 0.00 0.00 0.00 3.02
229 230 6.708054 TCTCTCTTTTTCCTCAATGACTTCAC 59.292 38.462 0.00 0.00 0.00 3.18
230 231 6.595682 TCTCTTTTTCCTCAATGACTTCACT 58.404 36.000 0.00 0.00 0.00 3.41
231 232 6.484643 TCTCTTTTTCCTCAATGACTTCACTG 59.515 38.462 0.00 0.00 0.00 3.66
232 233 4.836125 TTTTCCTCAATGACTTCACTGC 57.164 40.909 0.00 0.00 0.00 4.40
233 234 3.777106 TTCCTCAATGACTTCACTGCT 57.223 42.857 0.00 0.00 0.00 4.24
234 235 3.777106 TCCTCAATGACTTCACTGCTT 57.223 42.857 0.00 0.00 0.00 3.91
235 236 3.405831 TCCTCAATGACTTCACTGCTTG 58.594 45.455 0.00 0.00 0.00 4.01
236 237 2.095364 CCTCAATGACTTCACTGCTTGC 60.095 50.000 0.00 0.00 0.00 4.01
237 238 1.881973 TCAATGACTTCACTGCTTGCC 59.118 47.619 0.00 0.00 0.00 4.52
238 239 1.068055 CAATGACTTCACTGCTTGCCC 60.068 52.381 0.00 0.00 0.00 5.36
239 240 0.403271 ATGACTTCACTGCTTGCCCT 59.597 50.000 0.00 0.00 0.00 5.19
240 241 0.183492 TGACTTCACTGCTTGCCCTT 59.817 50.000 0.00 0.00 0.00 3.95
241 242 0.595095 GACTTCACTGCTTGCCCTTG 59.405 55.000 0.00 0.00 0.00 3.61
242 243 1.288127 CTTCACTGCTTGCCCTTGC 59.712 57.895 0.00 0.00 38.26 4.01
251 252 2.913578 TGCCCTTGCACCTTGCTG 60.914 61.111 0.00 0.00 45.31 4.41
252 253 4.368543 GCCCTTGCACCTTGCTGC 62.369 66.667 0.00 0.00 45.31 5.25
253 254 3.688159 CCCTTGCACCTTGCTGCC 61.688 66.667 0.00 0.00 45.31 4.85
254 255 4.047059 CCTTGCACCTTGCTGCCG 62.047 66.667 0.00 0.00 45.31 5.69
255 256 3.289834 CTTGCACCTTGCTGCCGT 61.290 61.111 0.00 0.00 45.31 5.68
256 257 3.547249 CTTGCACCTTGCTGCCGTG 62.547 63.158 0.00 2.16 45.31 4.94
281 282 2.179517 GCGACCCTCGACAGTGAG 59.820 66.667 0.00 0.00 43.74 3.51
282 283 2.179517 CGACCCTCGACAGTGAGC 59.820 66.667 0.00 0.00 43.74 4.26
283 284 2.336478 CGACCCTCGACAGTGAGCT 61.336 63.158 0.00 0.00 43.74 4.09
284 285 1.509004 GACCCTCGACAGTGAGCTC 59.491 63.158 6.82 6.82 34.56 4.09
285 286 1.939769 GACCCTCGACAGTGAGCTCC 61.940 65.000 12.15 2.40 34.56 4.70
286 287 1.680651 CCCTCGACAGTGAGCTCCT 60.681 63.158 12.15 5.01 34.56 3.69
287 288 1.662438 CCCTCGACAGTGAGCTCCTC 61.662 65.000 12.15 4.51 34.56 3.71
288 289 1.662438 CCTCGACAGTGAGCTCCTCC 61.662 65.000 12.15 0.00 34.56 4.30
289 290 1.987704 CTCGACAGTGAGCTCCTCCG 61.988 65.000 12.15 12.64 0.00 4.63
290 291 2.183046 GACAGTGAGCTCCTCCGC 59.817 66.667 12.15 0.00 0.00 5.54
291 292 3.363844 GACAGTGAGCTCCTCCGCC 62.364 68.421 12.15 0.00 0.00 6.13
292 293 4.504916 CAGTGAGCTCCTCCGCCG 62.505 72.222 12.15 0.00 0.00 6.46
309 310 3.489513 GCCGGTGCCCTCCCTTAT 61.490 66.667 1.90 0.00 0.00 1.73
310 311 2.829592 CCGGTGCCCTCCCTTATC 59.170 66.667 0.00 0.00 0.00 1.75
311 312 1.766461 CCGGTGCCCTCCCTTATCT 60.766 63.158 0.00 0.00 0.00 1.98
312 313 1.749033 CGGTGCCCTCCCTTATCTC 59.251 63.158 0.00 0.00 0.00 2.75
313 314 0.760945 CGGTGCCCTCCCTTATCTCT 60.761 60.000 0.00 0.00 0.00 3.10
314 315 1.052617 GGTGCCCTCCCTTATCTCTC 58.947 60.000 0.00 0.00 0.00 3.20
315 316 1.052617 GTGCCCTCCCTTATCTCTCC 58.947 60.000 0.00 0.00 0.00 3.71
316 317 0.104934 TGCCCTCCCTTATCTCTCCC 60.105 60.000 0.00 0.00 0.00 4.30
317 318 0.104934 GCCCTCCCTTATCTCTCCCA 60.105 60.000 0.00 0.00 0.00 4.37
318 319 1.723288 CCCTCCCTTATCTCTCCCAC 58.277 60.000 0.00 0.00 0.00 4.61
319 320 1.723288 CCTCCCTTATCTCTCCCACC 58.277 60.000 0.00 0.00 0.00 4.61
320 321 1.221781 CCTCCCTTATCTCTCCCACCT 59.778 57.143 0.00 0.00 0.00 4.00
321 322 2.604139 CTCCCTTATCTCTCCCACCTC 58.396 57.143 0.00 0.00 0.00 3.85
322 323 2.178984 CTCCCTTATCTCTCCCACCTCT 59.821 54.545 0.00 0.00 0.00 3.69
323 324 2.178106 TCCCTTATCTCTCCCACCTCTC 59.822 54.545 0.00 0.00 0.00 3.20
324 325 2.178984 CCCTTATCTCTCCCACCTCTCT 59.821 54.545 0.00 0.00 0.00 3.10
325 326 3.374762 CCCTTATCTCTCCCACCTCTCTT 60.375 52.174 0.00 0.00 0.00 2.85
326 327 4.294347 CCTTATCTCTCCCACCTCTCTTT 58.706 47.826 0.00 0.00 0.00 2.52
327 328 4.100808 CCTTATCTCTCCCACCTCTCTTTG 59.899 50.000 0.00 0.00 0.00 2.77
328 329 3.481559 ATCTCTCCCACCTCTCTTTGA 57.518 47.619 0.00 0.00 0.00 2.69
329 330 3.481559 TCTCTCCCACCTCTCTTTGAT 57.518 47.619 0.00 0.00 0.00 2.57
330 331 3.102972 TCTCTCCCACCTCTCTTTGATG 58.897 50.000 0.00 0.00 0.00 3.07
331 332 2.836981 CTCTCCCACCTCTCTTTGATGT 59.163 50.000 0.00 0.00 0.00 3.06
332 333 4.026744 CTCTCCCACCTCTCTTTGATGTA 58.973 47.826 0.00 0.00 0.00 2.29
333 334 4.624913 TCTCCCACCTCTCTTTGATGTAT 58.375 43.478 0.00 0.00 0.00 2.29
334 335 4.406972 TCTCCCACCTCTCTTTGATGTATG 59.593 45.833 0.00 0.00 0.00 2.39
335 336 4.104086 TCCCACCTCTCTTTGATGTATGT 58.896 43.478 0.00 0.00 0.00 2.29
336 337 4.162320 TCCCACCTCTCTTTGATGTATGTC 59.838 45.833 0.00 0.00 0.00 3.06
337 338 4.115516 CCACCTCTCTTTGATGTATGTCG 58.884 47.826 0.00 0.00 0.00 4.35
338 339 4.382040 CCACCTCTCTTTGATGTATGTCGT 60.382 45.833 0.00 0.00 0.00 4.34
339 340 4.800993 CACCTCTCTTTGATGTATGTCGTC 59.199 45.833 0.00 0.00 0.00 4.20
340 341 4.038361 CCTCTCTTTGATGTATGTCGTCG 58.962 47.826 0.00 0.00 35.01 5.12
341 342 4.438880 CCTCTCTTTGATGTATGTCGTCGT 60.439 45.833 0.00 0.00 35.01 4.34
342 343 4.659088 TCTCTTTGATGTATGTCGTCGTC 58.341 43.478 0.00 0.00 35.01 4.20
343 344 3.422655 TCTTTGATGTATGTCGTCGTCG 58.577 45.455 0.00 0.00 35.01 5.12
344 345 2.905959 TTGATGTATGTCGTCGTCGT 57.094 45.000 1.33 0.00 38.33 4.34
345 346 2.447089 TGATGTATGTCGTCGTCGTC 57.553 50.000 1.33 0.00 38.33 4.20
346 347 1.267186 TGATGTATGTCGTCGTCGTCG 60.267 52.381 5.50 5.50 38.33 5.12
347 348 0.723414 ATGTATGTCGTCGTCGTCGT 59.277 50.000 11.41 0.59 38.33 4.34
348 349 0.512518 TGTATGTCGTCGTCGTCGTT 59.487 50.000 11.41 1.86 38.33 3.85
349 350 1.166950 GTATGTCGTCGTCGTCGTTC 58.833 55.000 11.41 7.18 38.33 3.95
350 351 1.070821 TATGTCGTCGTCGTCGTTCT 58.929 50.000 11.41 1.07 38.33 3.01
351 352 0.179230 ATGTCGTCGTCGTCGTTCTC 60.179 55.000 11.41 2.99 38.33 2.87
352 353 1.508746 GTCGTCGTCGTCGTTCTCC 60.509 63.158 11.41 0.00 38.33 3.71
353 354 1.665916 TCGTCGTCGTCGTTCTCCT 60.666 57.895 11.41 0.00 38.33 3.69
354 355 0.388520 TCGTCGTCGTCGTTCTCCTA 60.389 55.000 11.41 0.00 38.33 2.94
355 356 0.247067 CGTCGTCGTCGTTCTCCTAC 60.247 60.000 3.67 0.00 38.33 3.18
356 357 0.792640 GTCGTCGTCGTTCTCCTACA 59.207 55.000 1.33 0.00 38.33 2.74
357 358 1.073964 TCGTCGTCGTTCTCCTACAG 58.926 55.000 1.33 0.00 38.33 2.74
358 359 0.096628 CGTCGTCGTTCTCCTACAGG 59.903 60.000 0.00 0.00 0.00 4.00
359 360 1.446907 GTCGTCGTTCTCCTACAGGA 58.553 55.000 0.00 0.00 43.08 3.86
360 361 1.808945 GTCGTCGTTCTCCTACAGGAA 59.191 52.381 0.00 0.00 44.91 3.36
361 362 1.808945 TCGTCGTTCTCCTACAGGAAC 59.191 52.381 0.00 0.00 44.91 3.62
362 363 1.538512 CGTCGTTCTCCTACAGGAACA 59.461 52.381 0.00 0.00 44.91 3.18
363 364 2.030540 CGTCGTTCTCCTACAGGAACAA 60.031 50.000 0.00 0.00 44.91 2.83
364 365 3.315418 GTCGTTCTCCTACAGGAACAAC 58.685 50.000 0.00 4.87 44.91 3.32
365 366 2.960384 TCGTTCTCCTACAGGAACAACA 59.040 45.455 15.30 5.11 44.91 3.33
366 367 3.057734 CGTTCTCCTACAGGAACAACAC 58.942 50.000 15.30 2.94 44.91 3.32
367 368 3.400255 GTTCTCCTACAGGAACAACACC 58.600 50.000 12.11 0.00 44.91 4.16
368 369 1.616865 TCTCCTACAGGAACAACACCG 59.383 52.381 0.00 0.00 44.91 4.94
369 370 1.343465 CTCCTACAGGAACAACACCGT 59.657 52.381 0.00 0.00 44.91 4.83
370 371 1.764134 TCCTACAGGAACAACACCGTT 59.236 47.619 0.00 0.00 42.18 4.44
371 372 1.871039 CCTACAGGAACAACACCGTTG 59.129 52.381 5.34 5.34 37.39 4.10
372 373 2.484065 CCTACAGGAACAACACCGTTGA 60.484 50.000 13.48 0.00 37.39 3.18
373 374 2.341846 ACAGGAACAACACCGTTGAT 57.658 45.000 13.48 1.50 0.00 2.57
374 375 3.478857 ACAGGAACAACACCGTTGATA 57.521 42.857 13.48 0.00 0.00 2.15
375 376 3.135994 ACAGGAACAACACCGTTGATAC 58.864 45.455 13.48 2.67 0.00 2.24
376 377 3.181458 ACAGGAACAACACCGTTGATACT 60.181 43.478 13.48 5.03 0.00 2.12
377 378 3.432252 CAGGAACAACACCGTTGATACTC 59.568 47.826 13.48 4.71 0.00 2.59
378 379 3.070446 AGGAACAACACCGTTGATACTCA 59.930 43.478 13.48 0.00 0.00 3.41
379 380 3.810941 GGAACAACACCGTTGATACTCAA 59.189 43.478 13.48 0.00 33.32 3.02
386 387 4.195308 TTGATACTCAACCGCCGC 57.805 55.556 0.00 0.00 30.26 6.53
387 388 1.448893 TTGATACTCAACCGCCGCC 60.449 57.895 0.00 0.00 30.26 6.13
388 389 2.960129 GATACTCAACCGCCGCCG 60.960 66.667 0.00 0.00 0.00 6.46
402 403 4.404654 GCCGCCGGAGCTTTGTTG 62.405 66.667 7.68 0.00 36.60 3.33
403 404 4.404654 CCGCCGGAGCTTTGTTGC 62.405 66.667 5.05 0.00 36.60 4.17
404 405 4.404654 CGCCGGAGCTTTGTTGCC 62.405 66.667 5.05 0.00 36.60 4.52
405 406 4.056125 GCCGGAGCTTTGTTGCCC 62.056 66.667 5.05 0.00 35.50 5.36
406 407 2.282462 CCGGAGCTTTGTTGCCCT 60.282 61.111 0.00 0.00 0.00 5.19
407 408 2.629656 CCGGAGCTTTGTTGCCCTG 61.630 63.158 0.00 0.00 0.00 4.45
408 409 2.653115 GGAGCTTTGTTGCCCTGC 59.347 61.111 0.00 0.00 0.00 4.85
409 410 2.653115 GAGCTTTGTTGCCCTGCC 59.347 61.111 0.00 0.00 0.00 4.85
410 411 3.273080 GAGCTTTGTTGCCCTGCCG 62.273 63.158 0.00 0.00 0.00 5.69
411 412 3.605664 GCTTTGTTGCCCTGCCGT 61.606 61.111 0.00 0.00 0.00 5.68
412 413 2.644992 CTTTGTTGCCCTGCCGTC 59.355 61.111 0.00 0.00 0.00 4.79
413 414 2.909965 TTTGTTGCCCTGCCGTCC 60.910 61.111 0.00 0.00 0.00 4.79
414 415 3.429372 TTTGTTGCCCTGCCGTCCT 62.429 57.895 0.00 0.00 0.00 3.85
415 416 2.058125 TTTGTTGCCCTGCCGTCCTA 62.058 55.000 0.00 0.00 0.00 2.94
416 417 2.058125 TTGTTGCCCTGCCGTCCTAA 62.058 55.000 0.00 0.00 0.00 2.69
417 418 2.038837 GTTGCCCTGCCGTCCTAAC 61.039 63.158 0.00 0.00 0.00 2.34
418 419 3.262448 TTGCCCTGCCGTCCTAACC 62.262 63.158 0.00 0.00 0.00 2.85
419 420 3.400054 GCCCTGCCGTCCTAACCT 61.400 66.667 0.00 0.00 0.00 3.50
420 421 2.062177 GCCCTGCCGTCCTAACCTA 61.062 63.158 0.00 0.00 0.00 3.08
421 422 1.821258 CCCTGCCGTCCTAACCTAC 59.179 63.158 0.00 0.00 0.00 3.18
422 423 0.974010 CCCTGCCGTCCTAACCTACA 60.974 60.000 0.00 0.00 0.00 2.74
423 424 0.175073 CCTGCCGTCCTAACCTACAC 59.825 60.000 0.00 0.00 0.00 2.90
424 425 1.183549 CTGCCGTCCTAACCTACACT 58.816 55.000 0.00 0.00 0.00 3.55
425 426 0.892755 TGCCGTCCTAACCTACACTG 59.107 55.000 0.00 0.00 0.00 3.66
426 427 0.459759 GCCGTCCTAACCTACACTGC 60.460 60.000 0.00 0.00 0.00 4.40
427 428 0.175073 CCGTCCTAACCTACACTGCC 59.825 60.000 0.00 0.00 0.00 4.85
428 429 0.179145 CGTCCTAACCTACACTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
429 430 0.459759 GTCCTAACCTACACTGCCGC 60.460 60.000 0.00 0.00 0.00 6.53
430 431 1.153429 CCTAACCTACACTGCCGCC 60.153 63.158 0.00 0.00 0.00 6.13
431 432 1.518572 CTAACCTACACTGCCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
432 433 2.901051 CTAACCTACACTGCCGCCGG 62.901 65.000 0.00 0.00 0.00 6.13
434 435 3.849951 CCTACACTGCCGCCGGAT 61.850 66.667 7.68 0.00 0.00 4.18
435 436 2.279517 CTACACTGCCGCCGGATC 60.280 66.667 7.68 0.00 0.00 3.36
436 437 3.792053 CTACACTGCCGCCGGATCC 62.792 68.421 7.68 0.00 0.00 3.36
476 477 4.699522 GCACGCCGAACCTCCCTT 62.700 66.667 0.00 0.00 0.00 3.95
477 478 2.742372 CACGCCGAACCTCCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
478 479 3.239253 ACGCCGAACCTCCCTTGT 61.239 61.111 0.00 0.00 0.00 3.16
479 480 2.742372 CGCCGAACCTCCCTTGTG 60.742 66.667 0.00 0.00 0.00 3.33
480 481 3.056328 GCCGAACCTCCCTTGTGC 61.056 66.667 0.00 0.00 0.00 4.57
481 482 2.359975 CCGAACCTCCCTTGTGCC 60.360 66.667 0.00 0.00 0.00 5.01
482 483 2.359975 CGAACCTCCCTTGTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
483 484 2.035783 GAACCTCCCTTGTGCCCC 59.964 66.667 0.00 0.00 0.00 5.80
484 485 3.920093 GAACCTCCCTTGTGCCCCG 62.920 68.421 0.00 0.00 0.00 5.73
502 503 4.559063 CTGCGCATGGGGAGGGAG 62.559 72.222 21.58 0.00 0.00 4.30
504 505 4.864334 GCGCATGGGGAGGGAGTG 62.864 72.222 12.19 0.00 0.00 3.51
505 506 4.181010 CGCATGGGGAGGGAGTGG 62.181 72.222 0.89 0.00 0.00 4.00
506 507 4.512914 GCATGGGGAGGGAGTGGC 62.513 72.222 0.00 0.00 0.00 5.01
507 508 3.813724 CATGGGGAGGGAGTGGCC 61.814 72.222 0.00 0.00 0.00 5.36
539 540 3.081409 CCGGACCGGTGGGAGATT 61.081 66.667 25.54 0.00 42.73 2.40
540 541 1.759299 CCGGACCGGTGGGAGATTA 60.759 63.158 25.54 0.00 42.73 1.75
541 542 1.332144 CCGGACCGGTGGGAGATTAA 61.332 60.000 25.54 0.00 42.73 1.40
542 543 0.104304 CGGACCGGTGGGAGATTAAG 59.896 60.000 14.63 0.00 36.97 1.85
543 544 0.468648 GGACCGGTGGGAGATTAAGG 59.531 60.000 14.63 0.00 36.97 2.69
544 545 1.201424 GACCGGTGGGAGATTAAGGT 58.799 55.000 14.63 0.00 36.97 3.50
545 546 1.138464 GACCGGTGGGAGATTAAGGTC 59.862 57.143 14.63 0.00 39.63 3.85
546 547 1.200519 CCGGTGGGAGATTAAGGTCA 58.799 55.000 0.00 0.00 34.06 4.02
547 548 1.134491 CCGGTGGGAGATTAAGGTCAC 60.134 57.143 0.00 0.00 34.06 3.67
548 549 1.553248 CGGTGGGAGATTAAGGTCACA 59.447 52.381 0.00 0.00 0.00 3.58
549 550 2.418746 CGGTGGGAGATTAAGGTCACAG 60.419 54.545 0.00 0.00 0.00 3.66
550 551 2.838202 GGTGGGAGATTAAGGTCACAGA 59.162 50.000 0.00 0.00 0.00 3.41
551 552 3.118592 GGTGGGAGATTAAGGTCACAGAG 60.119 52.174 0.00 0.00 0.00 3.35
552 553 3.107601 TGGGAGATTAAGGTCACAGAGG 58.892 50.000 0.00 0.00 0.00 3.69
553 554 3.245984 TGGGAGATTAAGGTCACAGAGGA 60.246 47.826 0.00 0.00 0.00 3.71
554 555 3.133183 GGGAGATTAAGGTCACAGAGGAC 59.867 52.174 0.00 0.00 37.06 3.85
564 565 4.810191 GTCACAGAGGACCTGATTACTT 57.190 45.455 0.00 0.00 45.78 2.24
565 566 5.153950 GTCACAGAGGACCTGATTACTTT 57.846 43.478 0.00 0.00 45.78 2.66
566 567 5.552178 GTCACAGAGGACCTGATTACTTTT 58.448 41.667 0.00 0.00 45.78 2.27
567 568 5.998363 GTCACAGAGGACCTGATTACTTTTT 59.002 40.000 0.00 0.00 45.78 1.94
587 588 6.685527 TTTTTAGGGGTCATTTTGCAAAAC 57.314 33.333 26.05 14.68 0.00 2.43
588 589 5.359194 TTTAGGGGTCATTTTGCAAAACA 57.641 34.783 26.05 13.40 0.00 2.83
589 590 3.922171 AGGGGTCATTTTGCAAAACAA 57.078 38.095 26.05 14.44 36.13 2.83
590 591 4.227864 AGGGGTCATTTTGCAAAACAAA 57.772 36.364 26.05 12.00 46.51 2.83
601 602 5.914085 TTGCAAAACAAAATTGTATCGGG 57.086 34.783 0.00 0.00 41.31 5.14
602 603 5.201713 TGCAAAACAAAATTGTATCGGGA 57.798 34.783 0.00 0.00 41.31 5.14
603 604 5.788450 TGCAAAACAAAATTGTATCGGGAT 58.212 33.333 0.00 0.00 41.31 3.85
604 605 5.636965 TGCAAAACAAAATTGTATCGGGATG 59.363 36.000 0.00 0.00 41.31 3.51
605 606 5.637387 GCAAAACAAAATTGTATCGGGATGT 59.363 36.000 0.00 0.00 41.31 3.06
606 607 6.809196 GCAAAACAAAATTGTATCGGGATGTA 59.191 34.615 0.00 0.00 41.31 2.29
607 608 7.329717 GCAAAACAAAATTGTATCGGGATGTAA 59.670 33.333 0.00 0.00 41.31 2.41
608 609 9.364989 CAAAACAAAATTGTATCGGGATGTAAT 57.635 29.630 0.00 0.00 41.31 1.89
609 610 9.936759 AAAACAAAATTGTATCGGGATGTAATT 57.063 25.926 0.00 0.00 41.31 1.40
610 611 8.925161 AACAAAATTGTATCGGGATGTAATTG 57.075 30.769 0.00 0.00 41.31 2.32
611 612 6.978080 ACAAAATTGTATCGGGATGTAATTGC 59.022 34.615 0.00 0.00 40.16 3.56
612 613 5.705609 AATTGTATCGGGATGTAATTGCC 57.294 39.130 0.00 0.00 0.00 4.52
613 614 4.431416 TTGTATCGGGATGTAATTGCCT 57.569 40.909 0.00 0.00 0.00 4.75
614 615 4.431416 TGTATCGGGATGTAATTGCCTT 57.569 40.909 0.00 0.00 0.00 4.35
615 616 4.787551 TGTATCGGGATGTAATTGCCTTT 58.212 39.130 0.00 0.00 0.00 3.11
616 617 5.197451 TGTATCGGGATGTAATTGCCTTTT 58.803 37.500 0.00 0.00 0.00 2.27
617 618 5.654650 TGTATCGGGATGTAATTGCCTTTTT 59.345 36.000 0.00 0.00 0.00 1.94
636 637 3.564053 TTTTTCTTACCACGTCACCCT 57.436 42.857 0.00 0.00 0.00 4.34
637 638 2.536761 TTTCTTACCACGTCACCCTG 57.463 50.000 0.00 0.00 0.00 4.45
638 639 1.416243 TTCTTACCACGTCACCCTGT 58.584 50.000 0.00 0.00 0.00 4.00
639 640 0.963962 TCTTACCACGTCACCCTGTC 59.036 55.000 0.00 0.00 0.00 3.51
640 641 0.037605 CTTACCACGTCACCCTGTCC 60.038 60.000 0.00 0.00 0.00 4.02
641 642 0.759812 TTACCACGTCACCCTGTCCA 60.760 55.000 0.00 0.00 0.00 4.02
642 643 1.183030 TACCACGTCACCCTGTCCAG 61.183 60.000 0.00 0.00 0.00 3.86
663 664 3.611766 GGGACCCACCTATCATAATCG 57.388 52.381 5.33 0.00 38.98 3.34
664 665 2.904434 GGGACCCACCTATCATAATCGT 59.096 50.000 5.33 0.00 38.98 3.73
665 666 3.306780 GGGACCCACCTATCATAATCGTG 60.307 52.174 5.33 0.00 38.98 4.35
666 667 3.323979 GGACCCACCTATCATAATCGTGT 59.676 47.826 0.00 0.00 35.41 4.49
667 668 4.202326 GGACCCACCTATCATAATCGTGTT 60.202 45.833 0.00 0.00 35.41 3.32
668 669 5.365619 GACCCACCTATCATAATCGTGTTT 58.634 41.667 0.00 0.00 0.00 2.83
669 670 6.463331 GGACCCACCTATCATAATCGTGTTTA 60.463 42.308 0.00 0.00 35.41 2.01
670 671 6.891388 ACCCACCTATCATAATCGTGTTTAA 58.109 36.000 0.00 0.00 0.00 1.52
671 672 7.340256 ACCCACCTATCATAATCGTGTTTAAA 58.660 34.615 0.00 0.00 0.00 1.52
672 673 7.830201 ACCCACCTATCATAATCGTGTTTAAAA 59.170 33.333 0.00 0.00 0.00 1.52
673 674 8.126700 CCCACCTATCATAATCGTGTTTAAAAC 58.873 37.037 0.00 0.00 0.00 2.43
674 675 7.849026 CCACCTATCATAATCGTGTTTAAAACG 59.151 37.037 0.57 0.57 42.36 3.60
682 683 4.713854 TCGTGTTTAAAACGACCTAAGC 57.286 40.909 6.24 0.00 44.58 3.09
683 684 4.370917 TCGTGTTTAAAACGACCTAAGCT 58.629 39.130 6.24 0.00 44.58 3.74
684 685 4.209703 TCGTGTTTAAAACGACCTAAGCTG 59.790 41.667 6.24 0.00 44.58 4.24
685 686 4.216731 GTGTTTAAAACGACCTAAGCTGC 58.783 43.478 0.00 0.00 0.00 5.25
686 687 3.251487 TGTTTAAAACGACCTAAGCTGCC 59.749 43.478 0.00 0.00 0.00 4.85
687 688 1.717194 TAAAACGACCTAAGCTGCCG 58.283 50.000 0.00 0.00 0.00 5.69
688 689 0.034337 AAAACGACCTAAGCTGCCGA 59.966 50.000 0.00 0.00 0.00 5.54
689 690 0.669625 AAACGACCTAAGCTGCCGAC 60.670 55.000 0.00 0.00 0.00 4.79
690 691 1.533469 AACGACCTAAGCTGCCGACT 61.533 55.000 0.00 0.00 0.00 4.18
691 692 0.679002 ACGACCTAAGCTGCCGACTA 60.679 55.000 0.00 0.00 0.00 2.59
692 693 0.029567 CGACCTAAGCTGCCGACTAG 59.970 60.000 0.00 0.00 0.00 2.57
693 694 1.104630 GACCTAAGCTGCCGACTAGT 58.895 55.000 0.00 0.00 0.00 2.57
694 695 0.818296 ACCTAAGCTGCCGACTAGTG 59.182 55.000 0.00 0.00 0.00 2.74
695 696 0.818296 CCTAAGCTGCCGACTAGTGT 59.182 55.000 0.00 0.00 0.00 3.55
696 697 1.204941 CCTAAGCTGCCGACTAGTGTT 59.795 52.381 0.00 0.00 0.00 3.32
697 698 2.353803 CCTAAGCTGCCGACTAGTGTTT 60.354 50.000 0.00 0.00 0.00 2.83
698 699 1.797025 AAGCTGCCGACTAGTGTTTC 58.203 50.000 0.00 0.00 0.00 2.78
699 700 0.969894 AGCTGCCGACTAGTGTTTCT 59.030 50.000 0.00 0.00 0.00 2.52
700 701 1.344763 AGCTGCCGACTAGTGTTTCTT 59.655 47.619 0.00 0.00 0.00 2.52
701 702 1.461127 GCTGCCGACTAGTGTTTCTTG 59.539 52.381 0.00 0.00 0.00 3.02
702 703 1.461127 CTGCCGACTAGTGTTTCTTGC 59.539 52.381 0.00 0.00 0.00 4.01
703 704 1.202592 TGCCGACTAGTGTTTCTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
704 705 1.871039 GCCGACTAGTGTTTCTTGCAA 59.129 47.619 0.00 0.00 0.00 4.08
705 706 2.289547 GCCGACTAGTGTTTCTTGCAAA 59.710 45.455 0.00 0.00 0.00 3.68
706 707 3.242936 GCCGACTAGTGTTTCTTGCAAAA 60.243 43.478 0.00 0.00 0.00 2.44
707 708 4.279659 CCGACTAGTGTTTCTTGCAAAAC 58.720 43.478 0.00 3.66 39.16 2.43
708 709 4.035208 CCGACTAGTGTTTCTTGCAAAACT 59.965 41.667 13.62 8.84 39.39 2.66
709 710 5.448632 CCGACTAGTGTTTCTTGCAAAACTT 60.449 40.000 13.62 6.31 39.39 2.66
710 711 6.238266 CCGACTAGTGTTTCTTGCAAAACTTA 60.238 38.462 13.62 6.95 39.39 2.24
711 712 6.846283 CGACTAGTGTTTCTTGCAAAACTTAG 59.154 38.462 13.62 15.18 39.39 2.18
712 713 7.254319 CGACTAGTGTTTCTTGCAAAACTTAGA 60.254 37.037 20.58 6.36 39.39 2.10
713 714 8.451908 ACTAGTGTTTCTTGCAAAACTTAGAT 57.548 30.769 20.58 10.57 39.39 1.98
714 715 9.555727 ACTAGTGTTTCTTGCAAAACTTAGATA 57.444 29.630 20.58 2.95 39.39 1.98
715 716 9.813080 CTAGTGTTTCTTGCAAAACTTAGATAC 57.187 33.333 13.62 6.54 39.39 2.24
716 717 8.220755 AGTGTTTCTTGCAAAACTTAGATACA 57.779 30.769 13.62 8.70 39.39 2.29
717 718 8.682710 AGTGTTTCTTGCAAAACTTAGATACAA 58.317 29.630 13.62 0.00 39.39 2.41
718 719 9.296400 GTGTTTCTTGCAAAACTTAGATACAAA 57.704 29.630 13.62 0.00 39.39 2.83
719 720 9.862371 TGTTTCTTGCAAAACTTAGATACAAAA 57.138 25.926 13.62 0.00 39.39 2.44
726 727 9.820229 TGCAAAACTTAGATACAAAATTAGTCG 57.180 29.630 0.00 0.00 0.00 4.18
727 728 9.821662 GCAAAACTTAGATACAAAATTAGTCGT 57.178 29.630 0.00 0.00 0.00 4.34
736 737 9.821662 AGATACAAAATTAGTCGTTTTTAGCAC 57.178 29.630 0.00 0.00 0.00 4.40
737 738 9.601971 GATACAAAATTAGTCGTTTTTAGCACA 57.398 29.630 0.00 0.00 0.00 4.57
738 739 9.953697 ATACAAAATTAGTCGTTTTTAGCACAA 57.046 25.926 0.00 0.00 0.00 3.33
739 740 8.690680 ACAAAATTAGTCGTTTTTAGCACAAA 57.309 26.923 0.00 0.00 0.00 2.83
740 741 8.588789 ACAAAATTAGTCGTTTTTAGCACAAAC 58.411 29.630 0.00 0.00 0.00 2.93
741 742 7.688478 AAATTAGTCGTTTTTAGCACAAACC 57.312 32.000 0.00 0.00 31.46 3.27
742 743 6.628919 ATTAGTCGTTTTTAGCACAAACCT 57.371 33.333 0.00 0.00 31.46 3.50
743 744 7.733402 ATTAGTCGTTTTTAGCACAAACCTA 57.267 32.000 0.00 0.00 31.46 3.08
744 745 7.733402 TTAGTCGTTTTTAGCACAAACCTAT 57.267 32.000 0.00 0.00 31.46 2.57
745 746 8.830201 TTAGTCGTTTTTAGCACAAACCTATA 57.170 30.769 0.00 0.00 31.46 1.31
746 747 7.360575 AGTCGTTTTTAGCACAAACCTATAG 57.639 36.000 0.00 0.00 31.46 1.31
747 748 7.156673 AGTCGTTTTTAGCACAAACCTATAGA 58.843 34.615 0.00 0.00 31.46 1.98
748 749 7.658575 AGTCGTTTTTAGCACAAACCTATAGAA 59.341 33.333 0.00 0.00 31.46 2.10
749 750 8.284693 GTCGTTTTTAGCACAAACCTATAGAAA 58.715 33.333 0.00 0.00 31.46 2.52
750 751 9.005777 TCGTTTTTAGCACAAACCTATAGAAAT 57.994 29.630 0.00 0.00 31.46 2.17
751 752 9.061610 CGTTTTTAGCACAAACCTATAGAAATG 57.938 33.333 0.00 0.00 31.46 2.32
752 753 9.908152 GTTTTTAGCACAAACCTATAGAAATGT 57.092 29.630 0.00 0.06 0.00 2.71
753 754 9.906660 TTTTTAGCACAAACCTATAGAAATGTG 57.093 29.630 19.16 19.16 40.72 3.21
758 759 6.555315 CACAAACCTATAGAAATGTGCTTCC 58.445 40.000 14.55 0.00 32.76 3.46
759 760 6.375455 CACAAACCTATAGAAATGTGCTTCCT 59.625 38.462 14.55 0.00 32.76 3.36
760 761 6.375455 ACAAACCTATAGAAATGTGCTTCCTG 59.625 38.462 0.00 0.00 0.00 3.86
761 762 4.455606 ACCTATAGAAATGTGCTTCCTGC 58.544 43.478 0.00 0.00 43.25 4.85
770 771 3.744559 GCTTCCTGCAAACGTGGA 58.255 55.556 0.00 0.00 42.31 4.02
771 772 1.282875 GCTTCCTGCAAACGTGGAC 59.717 57.895 0.00 0.00 42.31 4.02
772 773 1.166531 GCTTCCTGCAAACGTGGACT 61.167 55.000 0.00 0.00 42.31 3.85
773 774 1.308998 CTTCCTGCAAACGTGGACTT 58.691 50.000 0.00 0.00 0.00 3.01
774 775 1.264288 CTTCCTGCAAACGTGGACTTC 59.736 52.381 0.00 0.00 0.00 3.01
792 793 3.569701 ACTTCAATGTCGATGGCTTTTGT 59.430 39.130 0.00 0.00 0.00 2.83
835 836 5.359576 TGGATCTTTTACATTGTGGTATGGC 59.640 40.000 0.00 0.00 0.00 4.40
939 940 3.409026 AAGACTGGAGCGAGACAAAAT 57.591 42.857 0.00 0.00 0.00 1.82
950 952 6.183360 GGAGCGAGACAAAATCAATCATACAA 60.183 38.462 0.00 0.00 0.00 2.41
951 953 6.779117 AGCGAGACAAAATCAATCATACAAG 58.221 36.000 0.00 0.00 0.00 3.16
952 954 5.967674 GCGAGACAAAATCAATCATACAAGG 59.032 40.000 0.00 0.00 0.00 3.61
953 955 5.967674 CGAGACAAAATCAATCATACAAGGC 59.032 40.000 0.00 0.00 0.00 4.35
954 956 5.883661 AGACAAAATCAATCATACAAGGCG 58.116 37.500 0.00 0.00 0.00 5.52
1014 1021 1.326213 CGGCCATGGAGACTCAGACT 61.326 60.000 18.40 0.00 0.00 3.24
1093 1100 3.636231 CCCACCTCAACGGCTCCA 61.636 66.667 0.00 0.00 35.61 3.86
1295 6235 6.231211 ACTGTACTGACCACCTAAGATTTTG 58.769 40.000 6.77 0.00 0.00 2.44
1302 6242 7.947890 ACTGACCACCTAAGATTTTGGAAAATA 59.052 33.333 0.00 0.00 38.64 1.40
1330 6270 8.030692 GGCCTACCAAAAACGTCTTATAATTTT 58.969 33.333 0.00 0.00 35.26 1.82
1354 6295 2.702478 CCAGAGGAAGTAGATGCCATGA 59.298 50.000 0.00 0.00 0.00 3.07
1381 6322 6.305877 CGTACTGAAACTGTTCTGTGATAGTC 59.694 42.308 8.67 0.00 43.45 2.59
1422 6363 5.740513 GCTCCCTAGCTACTTAAATCACCTG 60.741 48.000 0.00 0.00 45.85 4.00
1447 6388 7.102993 GCCAATTTTACTACCATGGTGATTTT 58.897 34.615 28.17 8.99 0.00 1.82
1488 6429 2.074576 TCTTCGACACGTACCTCTCTG 58.925 52.381 0.00 0.00 0.00 3.35
1771 7064 7.175641 AGTCATTGTCTTTGAAGATGTTAAGGG 59.824 37.037 0.00 0.00 37.39 3.95
1778 7071 7.004086 TCTTTGAAGATGTTAAGGGTGTGATT 58.996 34.615 0.00 0.00 0.00 2.57
1862 7159 7.837202 ATCAAAACATGCTATGAACCAAATG 57.163 32.000 0.00 0.00 0.00 2.32
2019 7318 8.296713 TGTTAGGCTCTTTGATTTGTTTCATAC 58.703 33.333 0.00 0.00 0.00 2.39
2104 7407 6.367421 TGCGTTATTTCACATTGTTCTACAC 58.633 36.000 0.00 0.00 0.00 2.90
2206 7509 6.849151 AGAAATAAGGACAACACCTAAGGTT 58.151 36.000 0.00 0.00 39.62 3.50
2276 7586 2.887733 CGCAACGTGACTAGTTTTGTC 58.112 47.619 0.00 0.00 35.21 3.18
2359 7669 5.689383 TGAATGCTGTTGTAAAAGGTCTC 57.311 39.130 0.00 0.00 0.00 3.36
2387 7697 5.813157 TCTGTTGAAGACGTTGATGTTGTTA 59.187 36.000 0.00 0.00 0.00 2.41
2392 7720 9.607285 GTTGAAGACGTTGATGTTGTTATAAAT 57.393 29.630 0.00 0.00 0.00 1.40
2424 7752 2.543777 AGTTGTACGCCAATGAGTGT 57.456 45.000 0.00 0.00 35.02 3.55
2531 7859 5.842907 TGGATACTGTATGTTGATCTTCCG 58.157 41.667 4.79 0.00 37.61 4.30
2539 7867 1.270785 TGTTGATCTTCCGCTTCAGCA 60.271 47.619 0.00 0.00 42.21 4.41
2558 7888 8.654230 TTCAGCATATACTCTGAACAAATCTC 57.346 34.615 12.12 0.00 42.43 2.75
2559 7889 8.016301 TCAGCATATACTCTGAACAAATCTCT 57.984 34.615 3.92 0.00 36.50 3.10
2747 8087 9.681692 TTATGTGCTAATATTGCATCATGTTTC 57.318 29.630 21.08 9.54 42.69 2.78
2771 8111 6.953520 TCCAAAATTTGTGAAGGGAGACATAT 59.046 34.615 4.92 0.00 0.00 1.78
2810 8150 1.492599 GCTAAAGAGCTGGGAATCCCT 59.507 52.381 20.55 0.00 45.98 4.20
3157 8508 5.120363 GCTTACCTAACTTCCAAGACGAAAG 59.880 44.000 0.00 0.00 0.00 2.62
3191 8542 7.497925 GGAGATATGTTTAACCTCCAATGTC 57.502 40.000 11.47 0.00 42.15 3.06
3339 8703 1.047801 TGCAGCTGACCTCTACAACA 58.952 50.000 20.43 0.00 0.00 3.33
3547 8913 7.095355 ACTCTAAACATTGAATTCGGTGTGTAC 60.095 37.037 14.07 0.00 0.00 2.90
3687 9053 2.187163 GGCTCACGAGTTAGGCCC 59.813 66.667 0.00 0.00 37.12 5.80
3689 9055 2.656069 GCTCACGAGTTAGGCCCCA 61.656 63.158 0.00 0.00 0.00 4.96
3751 9166 3.024547 TGTTTCCCGAGTAGATCAGGAG 58.975 50.000 0.00 0.00 0.00 3.69
3817 9236 0.320421 ACTCATGTACGGTGTGTGCC 60.320 55.000 5.35 0.00 31.26 5.01
3852 9271 4.695217 AATGACGCACCGTGATTTATTT 57.305 36.364 1.65 0.00 40.31 1.40
3853 9272 5.804692 AATGACGCACCGTGATTTATTTA 57.195 34.783 1.65 0.00 40.31 1.40
3918 9337 5.263968 AGAGGGAAATATGTACAGTGACG 57.736 43.478 0.33 0.00 0.00 4.35
3946 9365 5.004821 CGTGATTCAGTTATTTGGACGAGAG 59.995 44.000 0.00 0.00 0.00 3.20
3968 9387 3.257375 GGGCGGTTCAGTATTTCCTTTTT 59.743 43.478 0.00 0.00 0.00 1.94
4027 9446 1.070786 GGAAGCACACGGAGTCCAA 59.929 57.895 10.49 0.00 41.61 3.53
4180 9638 5.712917 GCTAGGCTGTATATCCTGTTACTCT 59.287 44.000 0.00 0.00 34.02 3.24
4230 9688 1.134098 AGGGTAATATGTTGCTGCGCT 60.134 47.619 9.73 0.00 0.00 5.92
4236 9706 1.362768 TATGTTGCTGCGCTTCTGAG 58.637 50.000 9.73 0.00 0.00 3.35
4273 9753 0.257905 AAGGTTAAATCCCCGGCCTC 59.742 55.000 0.00 0.00 0.00 4.70
4275 9755 1.134228 GGTTAAATCCCCGGCCTCTA 58.866 55.000 0.00 0.00 0.00 2.43
4301 9845 3.728864 CGTAGTGATGCACAGCCATTTTC 60.729 47.826 0.00 0.00 36.74 2.29
4302 9846 2.522185 AGTGATGCACAGCCATTTTCT 58.478 42.857 0.00 0.00 36.74 2.52
4303 9847 2.895404 AGTGATGCACAGCCATTTTCTT 59.105 40.909 0.00 0.00 36.74 2.52
4430 10106 9.823098 CTGATGTTTTTATTTCTGTTGAGAGAG 57.177 33.333 0.00 0.00 0.00 3.20
4467 10143 5.464069 TGTCCCTATCAATCCTAAGCTACA 58.536 41.667 0.00 0.00 0.00 2.74
4483 10193 2.874086 GCTACATATGCTCATGTGTGCA 59.126 45.455 18.43 11.55 46.58 4.57
4484 10194 3.303593 GCTACATATGCTCATGTGTGCAC 60.304 47.826 18.43 10.75 45.57 4.57
4535 10770 1.507562 CACACGTGTGGCACTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
4536 10771 2.076100 CACACGTGTGGCACTTATCAT 58.924 47.619 35.65 0.33 42.10 2.45
4537 10772 2.483877 CACACGTGTGGCACTTATCATT 59.516 45.455 35.65 0.00 42.10 2.57
4538 10773 3.058293 CACACGTGTGGCACTTATCATTT 60.058 43.478 35.65 0.00 42.10 2.32
4539 10774 3.058293 ACACGTGTGGCACTTATCATTTG 60.058 43.478 22.71 7.02 34.19 2.32
4541 10776 3.188460 ACGTGTGGCACTTATCATTTGAC 59.812 43.478 19.83 3.30 31.34 3.18
4544 10779 5.562696 CGTGTGGCACTTATCATTTGACTTT 60.563 40.000 19.83 0.00 31.34 2.66
4570 10805 5.919348 AAGATCATCCATATGAGTTGGGT 57.081 39.130 3.65 0.00 45.17 4.51
4571 10806 5.495926 AGATCATCCATATGAGTTGGGTC 57.504 43.478 3.65 2.16 45.17 4.46
4574 10898 2.168458 TCCATATGAGTTGGGTCGGA 57.832 50.000 3.65 0.00 34.85 4.55
4577 10901 2.483714 CCATATGAGTTGGGTCGGAGTG 60.484 54.545 3.65 0.00 0.00 3.51
4579 10903 1.194781 ATGAGTTGGGTCGGAGTGCT 61.195 55.000 0.00 0.00 0.00 4.40
4581 10905 0.670854 GAGTTGGGTCGGAGTGCTTC 60.671 60.000 0.00 0.00 0.00 3.86
4582 10906 2.027625 GTTGGGTCGGAGTGCTTCG 61.028 63.158 0.00 0.00 0.00 3.79
4654 11477 5.245531 TGAGTTGTGTATTCAGATTCACCC 58.754 41.667 0.00 0.00 33.92 4.61
4655 11478 4.589908 AGTTGTGTATTCAGATTCACCCC 58.410 43.478 0.00 0.00 33.92 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.530744 GTGCCACGTCATCCTGTCTA 59.469 55.000 0.00 0.00 0.00 2.59
5 6 2.094659 CGTGCCACGTCATCCTGTC 61.095 63.158 9.53 0.00 36.74 3.51
6 7 2.048222 CGTGCCACGTCATCCTGT 60.048 61.111 9.53 0.00 36.74 4.00
7 8 2.094659 GTCGTGCCACGTCATCCTG 61.095 63.158 17.83 0.00 43.14 3.86
8 9 1.888436 ATGTCGTGCCACGTCATCCT 61.888 55.000 21.22 3.96 44.43 3.24
9 10 0.179121 TATGTCGTGCCACGTCATCC 60.179 55.000 28.03 9.29 44.43 3.51
10 11 1.635844 TTATGTCGTGCCACGTCATC 58.364 50.000 28.03 13.38 44.43 2.92
12 13 1.355005 CATTATGTCGTGCCACGTCA 58.645 50.000 18.60 18.60 42.93 4.35
13 14 0.650512 CCATTATGTCGTGCCACGTC 59.349 55.000 17.83 12.52 43.14 4.34
14 15 0.248012 TCCATTATGTCGTGCCACGT 59.752 50.000 17.83 0.00 43.14 4.49
15 16 1.526887 GATCCATTATGTCGTGCCACG 59.473 52.381 11.80 11.80 44.19 4.94
16 17 2.287915 GTGATCCATTATGTCGTGCCAC 59.712 50.000 0.00 0.00 0.00 5.01
17 18 2.093235 TGTGATCCATTATGTCGTGCCA 60.093 45.455 0.00 0.00 0.00 4.92
18 19 2.560504 TGTGATCCATTATGTCGTGCC 58.439 47.619 0.00 0.00 0.00 5.01
19 20 4.614555 TTTGTGATCCATTATGTCGTGC 57.385 40.909 0.00 0.00 0.00 5.34
20 21 7.224557 TGTCTATTTGTGATCCATTATGTCGTG 59.775 37.037 0.00 0.00 0.00 4.35
21 22 7.272244 TGTCTATTTGTGATCCATTATGTCGT 58.728 34.615 0.00 0.00 0.00 4.34
22 23 7.653311 TCTGTCTATTTGTGATCCATTATGTCG 59.347 37.037 0.00 0.00 0.00 4.35
23 24 8.893219 TCTGTCTATTTGTGATCCATTATGTC 57.107 34.615 0.00 0.00 0.00 3.06
24 25 9.857656 ATTCTGTCTATTTGTGATCCATTATGT 57.142 29.630 0.00 0.00 0.00 2.29
28 29 9.685276 TGTTATTCTGTCTATTTGTGATCCATT 57.315 29.630 0.00 0.00 0.00 3.16
29 30 9.857656 ATGTTATTCTGTCTATTTGTGATCCAT 57.142 29.630 0.00 0.00 0.00 3.41
57 58 9.267084 CCTCTTAGGCTCTTCTGTAATTTAATC 57.733 37.037 0.00 0.00 0.00 1.75
58 59 8.993424 TCCTCTTAGGCTCTTCTGTAATTTAAT 58.007 33.333 0.00 0.00 34.61 1.40
59 60 8.375493 TCCTCTTAGGCTCTTCTGTAATTTAA 57.625 34.615 0.00 0.00 34.61 1.52
60 61 7.973048 TCCTCTTAGGCTCTTCTGTAATTTA 57.027 36.000 0.00 0.00 34.61 1.40
61 62 6.875972 TCCTCTTAGGCTCTTCTGTAATTT 57.124 37.500 0.00 0.00 34.61 1.82
62 63 8.554490 TTATCCTCTTAGGCTCTTCTGTAATT 57.446 34.615 0.00 0.00 34.61 1.40
63 64 7.234577 CCTTATCCTCTTAGGCTCTTCTGTAAT 59.765 40.741 0.00 0.00 34.61 1.89
64 65 6.551601 CCTTATCCTCTTAGGCTCTTCTGTAA 59.448 42.308 0.00 0.00 34.61 2.41
65 66 6.071984 CCTTATCCTCTTAGGCTCTTCTGTA 58.928 44.000 0.00 0.00 34.61 2.74
66 67 4.898861 CCTTATCCTCTTAGGCTCTTCTGT 59.101 45.833 0.00 0.00 34.61 3.41
67 68 5.467035 CCTTATCCTCTTAGGCTCTTCTG 57.533 47.826 0.00 0.00 34.61 3.02
75 76 5.420739 CCTAAGCTAGCCTTATCCTCTTAGG 59.579 48.000 12.13 14.13 42.65 2.69
76 77 6.249951 TCCTAAGCTAGCCTTATCCTCTTAG 58.750 44.000 12.13 9.10 35.56 2.18
77 78 6.215515 TCCTAAGCTAGCCTTATCCTCTTA 57.784 41.667 12.13 0.00 35.56 2.10
78 79 5.081315 TCCTAAGCTAGCCTTATCCTCTT 57.919 43.478 12.13 0.00 35.56 2.85
79 80 4.672899 CTCCTAAGCTAGCCTTATCCTCT 58.327 47.826 12.13 0.00 35.56 3.69
80 81 3.194755 GCTCCTAAGCTAGCCTTATCCTC 59.805 52.174 12.13 0.00 45.55 3.71
81 82 3.169908 GCTCCTAAGCTAGCCTTATCCT 58.830 50.000 12.13 0.00 45.55 3.24
82 83 3.603158 GCTCCTAAGCTAGCCTTATCC 57.397 52.381 12.13 0.00 45.55 2.59
94 95 1.882167 GCTCGCTGCTGCTCCTAAG 60.882 63.158 14.03 4.60 38.95 2.18
95 96 2.185350 GCTCGCTGCTGCTCCTAA 59.815 61.111 14.03 0.00 38.95 2.69
156 157 2.503061 CTCCTCGTGGCCTGATGG 59.497 66.667 3.32 6.07 0.00 3.51
157 158 2.202987 GCTCCTCGTGGCCTGATG 60.203 66.667 3.32 0.00 0.00 3.07
158 159 2.685017 TGCTCCTCGTGGCCTGAT 60.685 61.111 3.32 0.00 0.00 2.90
159 160 3.385384 CTGCTCCTCGTGGCCTGA 61.385 66.667 3.32 0.33 0.00 3.86
162 163 4.828925 GAGCTGCTCCTCGTGGCC 62.829 72.222 18.80 0.00 0.00 5.36
163 164 4.828925 GGAGCTGCTCCTCGTGGC 62.829 72.222 35.51 12.16 46.41 5.01
187 188 3.711782 AGGGGGAGGAAGGGGAGG 61.712 72.222 0.00 0.00 0.00 4.30
188 189 2.040359 GAGGGGGAGGAAGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
189 190 2.543637 AGAGGGGGAGGAAGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
190 191 2.040359 GAGAGGGGGAGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
191 192 1.074850 GAGAGAGGGGGAGGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
192 193 0.341609 AAGAGAGAGGGGGAGGAAGG 59.658 60.000 0.00 0.00 0.00 3.46
193 194 2.262266 AAAGAGAGAGGGGGAGGAAG 57.738 55.000 0.00 0.00 0.00 3.46
194 195 2.743131 AAAAGAGAGAGGGGGAGGAA 57.257 50.000 0.00 0.00 0.00 3.36
195 196 2.552367 GAAAAAGAGAGAGGGGGAGGA 58.448 52.381 0.00 0.00 0.00 3.71
196 197 1.562008 GGAAAAAGAGAGAGGGGGAGG 59.438 57.143 0.00 0.00 0.00 4.30
197 198 2.503765 GAGGAAAAAGAGAGAGGGGGAG 59.496 54.545 0.00 0.00 0.00 4.30
198 199 2.158004 TGAGGAAAAAGAGAGAGGGGGA 60.158 50.000 0.00 0.00 0.00 4.81
199 200 2.269940 TGAGGAAAAAGAGAGAGGGGG 58.730 52.381 0.00 0.00 0.00 5.40
200 201 4.018960 TCATTGAGGAAAAAGAGAGAGGGG 60.019 45.833 0.00 0.00 0.00 4.79
201 202 4.940654 GTCATTGAGGAAAAAGAGAGAGGG 59.059 45.833 0.00 0.00 0.00 4.30
202 203 5.803552 AGTCATTGAGGAAAAAGAGAGAGG 58.196 41.667 0.00 0.00 0.00 3.69
203 204 6.933521 TGAAGTCATTGAGGAAAAAGAGAGAG 59.066 38.462 0.00 0.00 0.00 3.20
204 205 6.708054 GTGAAGTCATTGAGGAAAAAGAGAGA 59.292 38.462 0.00 0.00 0.00 3.10
205 206 6.709846 AGTGAAGTCATTGAGGAAAAAGAGAG 59.290 38.462 0.00 0.00 0.00 3.20
206 207 6.484643 CAGTGAAGTCATTGAGGAAAAAGAGA 59.515 38.462 0.00 0.00 35.88 3.10
207 208 6.666417 CAGTGAAGTCATTGAGGAAAAAGAG 58.334 40.000 0.00 0.00 35.88 2.85
208 209 5.009010 GCAGTGAAGTCATTGAGGAAAAAGA 59.991 40.000 7.89 0.00 35.88 2.52
209 210 5.009410 AGCAGTGAAGTCATTGAGGAAAAAG 59.991 40.000 7.89 0.00 35.88 2.27
210 211 4.889409 AGCAGTGAAGTCATTGAGGAAAAA 59.111 37.500 7.89 0.00 35.88 1.94
211 212 4.464008 AGCAGTGAAGTCATTGAGGAAAA 58.536 39.130 7.89 0.00 35.88 2.29
212 213 4.090761 AGCAGTGAAGTCATTGAGGAAA 57.909 40.909 7.89 0.00 35.88 3.13
213 214 3.777106 AGCAGTGAAGTCATTGAGGAA 57.223 42.857 7.89 0.00 35.88 3.36
214 215 3.405831 CAAGCAGTGAAGTCATTGAGGA 58.594 45.455 7.89 0.00 35.88 3.71
215 216 2.095364 GCAAGCAGTGAAGTCATTGAGG 60.095 50.000 7.89 0.00 35.88 3.86
216 217 2.095364 GGCAAGCAGTGAAGTCATTGAG 60.095 50.000 7.89 0.00 35.88 3.02
217 218 1.881973 GGCAAGCAGTGAAGTCATTGA 59.118 47.619 7.89 0.00 35.88 2.57
218 219 1.068055 GGGCAAGCAGTGAAGTCATTG 60.068 52.381 0.00 0.00 36.76 2.82
219 220 1.202976 AGGGCAAGCAGTGAAGTCATT 60.203 47.619 0.00 0.00 0.00 2.57
220 221 0.403271 AGGGCAAGCAGTGAAGTCAT 59.597 50.000 0.00 0.00 0.00 3.06
221 222 0.183492 AAGGGCAAGCAGTGAAGTCA 59.817 50.000 0.00 0.00 0.00 3.41
222 223 0.595095 CAAGGGCAAGCAGTGAAGTC 59.405 55.000 0.00 0.00 0.00 3.01
223 224 1.458639 GCAAGGGCAAGCAGTGAAGT 61.459 55.000 0.00 0.00 40.72 3.01
224 225 1.288127 GCAAGGGCAAGCAGTGAAG 59.712 57.895 0.00 0.00 40.72 3.02
225 226 3.447040 GCAAGGGCAAGCAGTGAA 58.553 55.556 0.00 0.00 40.72 3.18
260 261 4.135153 CTGTCGAGGGTCGCCAGG 62.135 72.222 0.00 0.00 41.54 4.45
262 263 3.680786 CACTGTCGAGGGTCGCCA 61.681 66.667 0.00 0.00 40.21 5.69
263 264 3.343788 CTCACTGTCGAGGGTCGCC 62.344 68.421 0.00 0.00 40.21 5.54
264 265 2.179517 CTCACTGTCGAGGGTCGC 59.820 66.667 0.00 0.00 40.21 5.19
265 266 2.179517 GCTCACTGTCGAGGGTCG 59.820 66.667 8.58 0.00 42.10 4.79
266 267 1.509004 GAGCTCACTGTCGAGGGTC 59.491 63.158 9.40 0.00 33.36 4.46
267 268 1.979693 GGAGCTCACTGTCGAGGGT 60.980 63.158 17.19 0.00 33.36 4.34
268 269 1.662438 GAGGAGCTCACTGTCGAGGG 61.662 65.000 17.19 0.00 33.36 4.30
269 270 1.662438 GGAGGAGCTCACTGTCGAGG 61.662 65.000 17.19 0.00 33.36 4.63
270 271 1.806568 GGAGGAGCTCACTGTCGAG 59.193 63.158 17.19 3.77 36.02 4.04
271 272 2.041115 CGGAGGAGCTCACTGTCGA 61.041 63.158 17.19 0.00 31.08 4.20
272 273 2.487428 CGGAGGAGCTCACTGTCG 59.513 66.667 17.19 11.77 31.08 4.35
273 274 2.183046 GCGGAGGAGCTCACTGTC 59.817 66.667 17.19 6.08 31.08 3.51
274 275 3.386237 GGCGGAGGAGCTCACTGT 61.386 66.667 17.19 0.00 37.29 3.55
275 276 4.504916 CGGCGGAGGAGCTCACTG 62.505 72.222 17.19 14.48 37.29 3.66
296 297 1.052617 GGAGAGATAAGGGAGGGCAC 58.947 60.000 0.00 0.00 0.00 5.01
297 298 0.104934 GGGAGAGATAAGGGAGGGCA 60.105 60.000 0.00 0.00 0.00 5.36
298 299 0.104934 TGGGAGAGATAAGGGAGGGC 60.105 60.000 0.00 0.00 0.00 5.19
299 300 1.723288 GTGGGAGAGATAAGGGAGGG 58.277 60.000 0.00 0.00 0.00 4.30
300 301 1.221781 AGGTGGGAGAGATAAGGGAGG 59.778 57.143 0.00 0.00 0.00 4.30
301 302 2.178984 AGAGGTGGGAGAGATAAGGGAG 59.821 54.545 0.00 0.00 0.00 4.30
302 303 2.178106 GAGAGGTGGGAGAGATAAGGGA 59.822 54.545 0.00 0.00 0.00 4.20
303 304 2.178984 AGAGAGGTGGGAGAGATAAGGG 59.821 54.545 0.00 0.00 0.00 3.95
304 305 3.611025 AGAGAGGTGGGAGAGATAAGG 57.389 52.381 0.00 0.00 0.00 2.69
305 306 4.959210 TCAAAGAGAGGTGGGAGAGATAAG 59.041 45.833 0.00 0.00 0.00 1.73
306 307 4.947883 TCAAAGAGAGGTGGGAGAGATAA 58.052 43.478 0.00 0.00 0.00 1.75
307 308 4.609866 TCAAAGAGAGGTGGGAGAGATA 57.390 45.455 0.00 0.00 0.00 1.98
308 309 3.481559 TCAAAGAGAGGTGGGAGAGAT 57.518 47.619 0.00 0.00 0.00 2.75
309 310 3.102972 CATCAAAGAGAGGTGGGAGAGA 58.897 50.000 0.00 0.00 0.00 3.10
310 311 2.836981 ACATCAAAGAGAGGTGGGAGAG 59.163 50.000 0.00 0.00 40.27 3.20
311 312 2.907892 ACATCAAAGAGAGGTGGGAGA 58.092 47.619 0.00 0.00 40.27 3.71
312 313 4.163078 ACATACATCAAAGAGAGGTGGGAG 59.837 45.833 0.00 0.00 42.07 4.30
313 314 4.104086 ACATACATCAAAGAGAGGTGGGA 58.896 43.478 0.00 0.00 42.07 4.37
314 315 4.446371 GACATACATCAAAGAGAGGTGGG 58.554 47.826 0.00 0.00 42.07 4.61
315 316 4.115516 CGACATACATCAAAGAGAGGTGG 58.884 47.826 0.00 0.00 42.07 4.61
316 317 4.748892 ACGACATACATCAAAGAGAGGTG 58.251 43.478 0.00 0.00 42.07 4.00
317 318 4.438880 CGACGACATACATCAAAGAGAGGT 60.439 45.833 0.00 0.00 44.60 3.85
318 319 4.038361 CGACGACATACATCAAAGAGAGG 58.962 47.826 0.00 0.00 0.00 3.69
319 320 4.663166 ACGACGACATACATCAAAGAGAG 58.337 43.478 0.00 0.00 0.00 3.20
320 321 4.659088 GACGACGACATACATCAAAGAGA 58.341 43.478 0.00 0.00 0.00 3.10
321 322 3.478874 CGACGACGACATACATCAAAGAG 59.521 47.826 0.00 0.00 42.66 2.85
322 323 3.120095 ACGACGACGACATACATCAAAGA 60.120 43.478 15.32 0.00 42.66 2.52
323 324 3.168963 ACGACGACGACATACATCAAAG 58.831 45.455 15.32 0.00 42.66 2.77
324 325 3.165890 GACGACGACGACATACATCAAA 58.834 45.455 15.32 0.00 42.66 2.69
325 326 2.777494 GACGACGACGACATACATCAA 58.223 47.619 15.32 0.00 42.66 2.57
326 327 1.267186 CGACGACGACGACATACATCA 60.267 52.381 15.32 0.00 42.66 3.07
327 328 1.267235 ACGACGACGACGACATACATC 60.267 52.381 25.15 0.00 42.66 3.06
328 329 0.723414 ACGACGACGACGACATACAT 59.277 50.000 25.15 0.00 42.66 2.29
329 330 0.512518 AACGACGACGACGACATACA 59.487 50.000 25.15 0.00 42.66 2.29
330 331 1.166950 GAACGACGACGACGACATAC 58.833 55.000 25.15 8.24 42.66 2.39
331 332 1.059692 GAGAACGACGACGACGACATA 59.940 52.381 25.15 0.00 42.66 2.29
332 333 0.179230 GAGAACGACGACGACGACAT 60.179 55.000 25.15 11.19 42.66 3.06
333 334 1.202568 GAGAACGACGACGACGACA 59.797 57.895 25.15 0.00 42.66 4.35
334 335 1.508746 GGAGAACGACGACGACGAC 60.509 63.158 25.15 17.19 42.66 4.34
335 336 0.388520 TAGGAGAACGACGACGACGA 60.389 55.000 25.15 0.00 42.66 4.20
336 337 0.247067 GTAGGAGAACGACGACGACG 60.247 60.000 17.60 17.60 42.66 5.12
337 338 0.792640 TGTAGGAGAACGACGACGAC 59.207 55.000 15.32 7.63 42.66 4.34
338 339 1.073964 CTGTAGGAGAACGACGACGA 58.926 55.000 15.32 0.00 42.66 4.20
339 340 0.096628 CCTGTAGGAGAACGACGACG 59.903 60.000 5.58 5.58 40.81 5.12
340 341 1.446907 TCCTGTAGGAGAACGACGAC 58.553 55.000 0.00 0.00 39.78 4.34
341 342 1.808945 GTTCCTGTAGGAGAACGACGA 59.191 52.381 0.00 0.00 46.36 4.20
342 343 1.538512 TGTTCCTGTAGGAGAACGACG 59.461 52.381 0.26 0.00 46.36 5.12
343 344 3.315418 GTTGTTCCTGTAGGAGAACGAC 58.685 50.000 7.34 7.34 46.36 4.34
344 345 2.960384 TGTTGTTCCTGTAGGAGAACGA 59.040 45.455 14.92 5.10 46.36 3.85
345 346 3.057734 GTGTTGTTCCTGTAGGAGAACG 58.942 50.000 14.92 0.00 46.36 3.95
346 347 3.400255 GGTGTTGTTCCTGTAGGAGAAC 58.600 50.000 13.82 13.82 46.36 3.01
347 348 2.036733 CGGTGTTGTTCCTGTAGGAGAA 59.963 50.000 0.26 0.00 46.36 2.87
348 349 1.616865 CGGTGTTGTTCCTGTAGGAGA 59.383 52.381 0.26 0.00 46.36 3.71
349 350 1.343465 ACGGTGTTGTTCCTGTAGGAG 59.657 52.381 0.26 0.00 46.36 3.69
350 351 1.416243 ACGGTGTTGTTCCTGTAGGA 58.584 50.000 0.00 0.00 43.73 2.94
351 352 1.871039 CAACGGTGTTGTTCCTGTAGG 59.129 52.381 0.00 0.00 0.00 3.18
352 353 2.828877 TCAACGGTGTTGTTCCTGTAG 58.171 47.619 0.00 0.00 0.00 2.74
353 354 2.983907 TCAACGGTGTTGTTCCTGTA 57.016 45.000 0.00 0.00 0.00 2.74
354 355 2.341846 ATCAACGGTGTTGTTCCTGT 57.658 45.000 0.00 0.00 0.00 4.00
355 356 3.399330 AGTATCAACGGTGTTGTTCCTG 58.601 45.455 0.00 0.00 0.00 3.86
356 357 3.070446 TGAGTATCAACGGTGTTGTTCCT 59.930 43.478 0.00 4.15 45.97 3.36
357 358 3.395639 TGAGTATCAACGGTGTTGTTCC 58.604 45.455 0.00 0.00 45.97 3.62
371 372 2.960129 CGGCGGCGGTTGAGTATC 60.960 66.667 25.36 0.00 0.00 2.24
385 386 4.404654 CAACAAAGCTCCGGCGGC 62.405 66.667 23.83 11.05 44.37 6.53
386 387 4.404654 GCAACAAAGCTCCGGCGG 62.405 66.667 22.51 22.51 44.37 6.13
387 388 4.404654 GGCAACAAAGCTCCGGCG 62.405 66.667 0.00 0.00 44.37 6.46
388 389 4.056125 GGGCAACAAAGCTCCGGC 62.056 66.667 0.00 0.00 39.74 6.13
389 390 2.282462 AGGGCAACAAAGCTCCGG 60.282 61.111 0.00 0.00 34.85 5.14
390 391 2.956987 CAGGGCAACAAAGCTCCG 59.043 61.111 0.00 0.00 34.85 4.63
391 392 2.653115 GCAGGGCAACAAAGCTCC 59.347 61.111 0.00 0.00 34.85 4.70
392 393 2.653115 GGCAGGGCAACAAAGCTC 59.347 61.111 0.00 0.00 39.74 4.09
393 394 3.297620 CGGCAGGGCAACAAAGCT 61.298 61.111 0.00 0.00 39.74 3.74
394 395 3.558099 GACGGCAGGGCAACAAAGC 62.558 63.158 0.00 0.00 39.74 3.51
395 396 2.644992 GACGGCAGGGCAACAAAG 59.355 61.111 0.00 0.00 39.74 2.77
396 397 2.058125 TAGGACGGCAGGGCAACAAA 62.058 55.000 0.00 0.00 39.74 2.83
397 398 2.058125 TTAGGACGGCAGGGCAACAA 62.058 55.000 0.00 0.00 39.74 2.83
398 399 2.521451 TTAGGACGGCAGGGCAACA 61.521 57.895 0.00 0.00 39.74 3.33
399 400 2.038837 GTTAGGACGGCAGGGCAAC 61.039 63.158 0.00 0.00 0.00 4.17
400 401 2.349755 GTTAGGACGGCAGGGCAA 59.650 61.111 0.00 0.00 0.00 4.52
401 402 2.808761 TAGGTTAGGACGGCAGGGCA 62.809 60.000 0.00 0.00 0.00 5.36
402 403 2.062177 TAGGTTAGGACGGCAGGGC 61.062 63.158 0.00 0.00 0.00 5.19
403 404 0.974010 TGTAGGTTAGGACGGCAGGG 60.974 60.000 0.00 0.00 0.00 4.45
404 405 0.175073 GTGTAGGTTAGGACGGCAGG 59.825 60.000 0.00 0.00 0.00 4.85
405 406 1.135083 CAGTGTAGGTTAGGACGGCAG 60.135 57.143 0.00 0.00 0.00 4.85
406 407 0.892755 CAGTGTAGGTTAGGACGGCA 59.107 55.000 0.00 0.00 0.00 5.69
407 408 0.459759 GCAGTGTAGGTTAGGACGGC 60.460 60.000 0.00 0.00 0.00 5.68
408 409 0.175073 GGCAGTGTAGGTTAGGACGG 59.825 60.000 0.00 0.00 0.00 4.79
409 410 0.179145 CGGCAGTGTAGGTTAGGACG 60.179 60.000 0.00 0.00 0.00 4.79
410 411 0.459759 GCGGCAGTGTAGGTTAGGAC 60.460 60.000 0.00 0.00 0.00 3.85
411 412 1.610554 GGCGGCAGTGTAGGTTAGGA 61.611 60.000 3.07 0.00 0.00 2.94
412 413 1.153429 GGCGGCAGTGTAGGTTAGG 60.153 63.158 3.07 0.00 0.00 2.69
413 414 1.518572 CGGCGGCAGTGTAGGTTAG 60.519 63.158 10.53 0.00 0.00 2.34
414 415 2.574929 CGGCGGCAGTGTAGGTTA 59.425 61.111 10.53 0.00 0.00 2.85
415 416 4.388499 CCGGCGGCAGTGTAGGTT 62.388 66.667 15.42 0.00 0.00 3.50
417 418 3.792053 GATCCGGCGGCAGTGTAGG 62.792 68.421 23.83 0.06 0.00 3.18
418 419 2.279517 GATCCGGCGGCAGTGTAG 60.280 66.667 23.83 0.00 0.00 2.74
419 420 3.845259 GGATCCGGCGGCAGTGTA 61.845 66.667 23.83 2.30 0.00 2.90
459 460 4.699522 AAGGGAGGTTCGGCGTGC 62.700 66.667 6.85 0.27 0.00 5.34
460 461 2.742372 CAAGGGAGGTTCGGCGTG 60.742 66.667 6.85 0.00 0.00 5.34
461 462 3.239253 ACAAGGGAGGTTCGGCGT 61.239 61.111 6.85 0.00 0.00 5.68
462 463 2.742372 CACAAGGGAGGTTCGGCG 60.742 66.667 0.00 0.00 0.00 6.46
463 464 3.056328 GCACAAGGGAGGTTCGGC 61.056 66.667 0.00 0.00 0.00 5.54
464 465 2.359975 GGCACAAGGGAGGTTCGG 60.360 66.667 0.00 0.00 0.00 4.30
465 466 2.359975 GGGCACAAGGGAGGTTCG 60.360 66.667 0.00 0.00 0.00 3.95
466 467 2.035783 GGGGCACAAGGGAGGTTC 59.964 66.667 0.00 0.00 0.00 3.62
467 468 3.966543 CGGGGCACAAGGGAGGTT 61.967 66.667 0.00 0.00 0.00 3.50
485 486 4.559063 CTCCCTCCCCATGCGCAG 62.559 72.222 18.32 8.11 0.00 5.18
487 488 4.864334 CACTCCCTCCCCATGCGC 62.864 72.222 0.00 0.00 0.00 6.09
488 489 4.181010 CCACTCCCTCCCCATGCG 62.181 72.222 0.00 0.00 0.00 4.73
489 490 4.512914 GCCACTCCCTCCCCATGC 62.513 72.222 0.00 0.00 0.00 4.06
490 491 3.813724 GGCCACTCCCTCCCCATG 61.814 72.222 0.00 0.00 0.00 3.66
523 524 0.104304 CTTAATCTCCCACCGGTCCG 59.896 60.000 2.59 3.60 0.00 4.79
524 525 0.468648 CCTTAATCTCCCACCGGTCC 59.531 60.000 2.59 0.00 0.00 4.46
525 526 1.138464 GACCTTAATCTCCCACCGGTC 59.862 57.143 2.59 0.00 33.53 4.79
526 527 1.201424 GACCTTAATCTCCCACCGGT 58.799 55.000 0.00 0.00 0.00 5.28
527 528 1.134491 GTGACCTTAATCTCCCACCGG 60.134 57.143 0.00 0.00 0.00 5.28
528 529 1.553248 TGTGACCTTAATCTCCCACCG 59.447 52.381 0.00 0.00 0.00 4.94
529 530 2.838202 TCTGTGACCTTAATCTCCCACC 59.162 50.000 0.00 0.00 0.00 4.61
530 531 3.118592 CCTCTGTGACCTTAATCTCCCAC 60.119 52.174 0.00 0.00 0.00 4.61
531 532 3.107601 CCTCTGTGACCTTAATCTCCCA 58.892 50.000 0.00 0.00 0.00 4.37
532 533 3.133183 GTCCTCTGTGACCTTAATCTCCC 59.867 52.174 0.00 0.00 0.00 4.30
533 534 4.394439 GTCCTCTGTGACCTTAATCTCC 57.606 50.000 0.00 0.00 0.00 3.71
543 544 4.810191 AAGTAATCAGGTCCTCTGTGAC 57.190 45.455 0.00 0.00 43.76 3.67
544 545 5.825593 AAAAGTAATCAGGTCCTCTGTGA 57.174 39.130 0.00 0.00 43.76 3.58
564 565 6.180472 TGTTTTGCAAAATGACCCCTAAAAA 58.820 32.000 26.24 0.00 0.00 1.94
565 566 5.745227 TGTTTTGCAAAATGACCCCTAAAA 58.255 33.333 26.24 0.00 0.00 1.52
566 567 5.359194 TGTTTTGCAAAATGACCCCTAAA 57.641 34.783 26.24 0.00 0.00 1.85
567 568 5.359194 TTGTTTTGCAAAATGACCCCTAA 57.641 34.783 26.24 9.78 33.53 2.69
568 569 5.359194 TTTGTTTTGCAAAATGACCCCTA 57.641 34.783 26.24 7.78 43.39 3.53
569 570 3.922171 TTGTTTTGCAAAATGACCCCT 57.078 38.095 26.24 0.00 33.53 4.79
578 579 6.049149 TCCCGATACAATTTTGTTTTGCAAA 58.951 32.000 8.05 8.05 44.52 3.68
579 580 5.601662 TCCCGATACAATTTTGTTTTGCAA 58.398 33.333 0.00 0.00 42.35 4.08
580 581 5.201713 TCCCGATACAATTTTGTTTTGCA 57.798 34.783 0.63 0.00 42.35 4.08
581 582 5.637387 ACATCCCGATACAATTTTGTTTTGC 59.363 36.000 0.63 0.00 42.35 3.68
582 583 8.749841 TTACATCCCGATACAATTTTGTTTTG 57.250 30.769 0.63 0.00 42.35 2.44
583 584 9.936759 AATTACATCCCGATACAATTTTGTTTT 57.063 25.926 0.63 0.00 42.35 2.43
584 585 9.364989 CAATTACATCCCGATACAATTTTGTTT 57.635 29.630 0.63 0.00 42.35 2.83
585 586 7.491048 GCAATTACATCCCGATACAATTTTGTT 59.509 33.333 0.63 0.00 42.35 2.83
586 587 6.978080 GCAATTACATCCCGATACAATTTTGT 59.022 34.615 1.08 1.08 44.86 2.83
587 588 6.420604 GGCAATTACATCCCGATACAATTTTG 59.579 38.462 0.00 0.00 0.00 2.44
588 589 6.323739 AGGCAATTACATCCCGATACAATTTT 59.676 34.615 0.00 0.00 0.00 1.82
589 590 5.833131 AGGCAATTACATCCCGATACAATTT 59.167 36.000 0.00 0.00 0.00 1.82
590 591 5.385198 AGGCAATTACATCCCGATACAATT 58.615 37.500 0.00 0.00 0.00 2.32
591 592 4.985538 AGGCAATTACATCCCGATACAAT 58.014 39.130 0.00 0.00 0.00 2.71
592 593 4.431416 AGGCAATTACATCCCGATACAA 57.569 40.909 0.00 0.00 0.00 2.41
593 594 4.431416 AAGGCAATTACATCCCGATACA 57.569 40.909 0.00 0.00 0.00 2.29
594 595 5.767816 AAAAGGCAATTACATCCCGATAC 57.232 39.130 0.00 0.00 0.00 2.24
616 617 3.207778 CAGGGTGACGTGGTAAGAAAAA 58.792 45.455 0.00 0.00 42.41 1.94
617 618 2.841215 CAGGGTGACGTGGTAAGAAAA 58.159 47.619 0.00 0.00 42.41 2.29
618 619 2.536761 CAGGGTGACGTGGTAAGAAA 57.463 50.000 0.00 0.00 42.41 2.52
638 639 1.316969 GATAGGTGGGTCCCCTGGA 59.683 63.158 5.13 0.00 36.75 3.86
639 640 0.401979 ATGATAGGTGGGTCCCCTGG 60.402 60.000 5.13 0.00 36.75 4.45
640 641 2.415983 TATGATAGGTGGGTCCCCTG 57.584 55.000 5.13 0.00 36.75 4.45
641 642 3.532102 GATTATGATAGGTGGGTCCCCT 58.468 50.000 5.13 0.00 36.75 4.79
642 643 2.236395 CGATTATGATAGGTGGGTCCCC 59.764 54.545 5.13 0.00 36.75 4.81
643 644 2.904434 ACGATTATGATAGGTGGGTCCC 59.096 50.000 0.00 0.00 36.75 4.46
644 645 3.323979 ACACGATTATGATAGGTGGGTCC 59.676 47.826 0.00 0.00 33.07 4.46
645 646 4.602340 ACACGATTATGATAGGTGGGTC 57.398 45.455 0.00 0.00 33.07 4.46
646 647 5.367945 AAACACGATTATGATAGGTGGGT 57.632 39.130 0.00 0.00 33.07 4.51
647 648 7.795482 TTTAAACACGATTATGATAGGTGGG 57.205 36.000 0.00 0.00 33.07 4.61
648 649 7.849026 CGTTTTAAACACGATTATGATAGGTGG 59.151 37.037 8.61 0.00 40.20 4.61
649 650 8.597227 TCGTTTTAAACACGATTATGATAGGTG 58.403 33.333 16.37 1.09 41.66 4.00
650 651 8.706492 TCGTTTTAAACACGATTATGATAGGT 57.294 30.769 16.37 0.00 41.66 3.08
661 662 4.209703 CAGCTTAGGTCGTTTTAAACACGA 59.790 41.667 16.37 16.37 44.25 4.35
662 663 4.451557 CAGCTTAGGTCGTTTTAAACACG 58.548 43.478 8.61 13.33 39.08 4.49
663 664 4.216731 GCAGCTTAGGTCGTTTTAAACAC 58.783 43.478 8.61 5.47 0.00 3.32
664 665 3.251487 GGCAGCTTAGGTCGTTTTAAACA 59.749 43.478 8.61 0.00 0.00 2.83
665 666 3.666111 CGGCAGCTTAGGTCGTTTTAAAC 60.666 47.826 0.00 0.00 0.00 2.01
666 667 2.481185 CGGCAGCTTAGGTCGTTTTAAA 59.519 45.455 0.00 0.00 0.00 1.52
667 668 2.070783 CGGCAGCTTAGGTCGTTTTAA 58.929 47.619 0.00 0.00 0.00 1.52
668 669 1.273048 TCGGCAGCTTAGGTCGTTTTA 59.727 47.619 0.00 0.00 0.00 1.52
669 670 0.034337 TCGGCAGCTTAGGTCGTTTT 59.966 50.000 0.00 0.00 0.00 2.43
670 671 0.669625 GTCGGCAGCTTAGGTCGTTT 60.670 55.000 0.00 0.00 0.00 3.60
671 672 1.080025 GTCGGCAGCTTAGGTCGTT 60.080 57.895 0.00 0.00 0.00 3.85
672 673 0.679002 TAGTCGGCAGCTTAGGTCGT 60.679 55.000 0.00 0.00 0.00 4.34
673 674 0.029567 CTAGTCGGCAGCTTAGGTCG 59.970 60.000 0.00 0.00 0.00 4.79
674 675 1.104630 ACTAGTCGGCAGCTTAGGTC 58.895 55.000 0.00 0.00 0.00 3.85
675 676 0.818296 CACTAGTCGGCAGCTTAGGT 59.182 55.000 0.00 0.00 0.00 3.08
676 677 0.818296 ACACTAGTCGGCAGCTTAGG 59.182 55.000 0.00 0.00 0.00 2.69
677 678 2.656560 AACACTAGTCGGCAGCTTAG 57.343 50.000 0.00 0.00 0.00 2.18
678 679 2.561419 AGAAACACTAGTCGGCAGCTTA 59.439 45.455 0.00 0.00 0.00 3.09
679 680 1.344763 AGAAACACTAGTCGGCAGCTT 59.655 47.619 0.00 0.00 0.00 3.74
680 681 0.969894 AGAAACACTAGTCGGCAGCT 59.030 50.000 0.00 0.00 0.00 4.24
681 682 1.461127 CAAGAAACACTAGTCGGCAGC 59.539 52.381 0.00 0.00 0.00 5.25
682 683 1.461127 GCAAGAAACACTAGTCGGCAG 59.539 52.381 0.00 0.00 0.00 4.85
683 684 1.202592 TGCAAGAAACACTAGTCGGCA 60.203 47.619 0.00 0.00 0.00 5.69
684 685 1.508632 TGCAAGAAACACTAGTCGGC 58.491 50.000 0.00 0.00 0.00 5.54
685 686 4.035208 AGTTTTGCAAGAAACACTAGTCGG 59.965 41.667 14.70 0.00 40.98 4.79
686 687 5.156804 AGTTTTGCAAGAAACACTAGTCG 57.843 39.130 14.70 0.00 40.98 4.18
687 688 7.916552 TCTAAGTTTTGCAAGAAACACTAGTC 58.083 34.615 14.70 0.00 40.98 2.59
688 689 7.859325 TCTAAGTTTTGCAAGAAACACTAGT 57.141 32.000 14.70 0.00 40.98 2.57
689 690 9.813080 GTATCTAAGTTTTGCAAGAAACACTAG 57.187 33.333 14.70 13.45 40.98 2.57
690 691 9.332502 TGTATCTAAGTTTTGCAAGAAACACTA 57.667 29.630 14.70 6.33 40.98 2.74
691 692 8.220755 TGTATCTAAGTTTTGCAAGAAACACT 57.779 30.769 14.70 5.63 40.98 3.55
692 693 8.850454 TTGTATCTAAGTTTTGCAAGAAACAC 57.150 30.769 14.70 5.29 40.98 3.32
693 694 9.862371 TTTTGTATCTAAGTTTTGCAAGAAACA 57.138 25.926 14.70 3.79 40.98 2.83
700 701 9.820229 CGACTAATTTTGTATCTAAGTTTTGCA 57.180 29.630 0.00 0.00 0.00 4.08
701 702 9.821662 ACGACTAATTTTGTATCTAAGTTTTGC 57.178 29.630 0.00 0.00 0.00 3.68
710 711 9.821662 GTGCTAAAAACGACTAATTTTGTATCT 57.178 29.630 0.00 0.00 31.62 1.98
711 712 9.601971 TGTGCTAAAAACGACTAATTTTGTATC 57.398 29.630 0.00 0.00 31.62 2.24
712 713 9.953697 TTGTGCTAAAAACGACTAATTTTGTAT 57.046 25.926 0.00 0.00 31.62 2.29
713 714 9.784680 TTTGTGCTAAAAACGACTAATTTTGTA 57.215 25.926 0.00 0.00 31.62 2.41
714 715 8.588789 GTTTGTGCTAAAAACGACTAATTTTGT 58.411 29.630 0.00 0.00 31.62 2.83
715 716 8.053653 GGTTTGTGCTAAAAACGACTAATTTTG 58.946 33.333 0.00 0.00 38.21 2.44
716 717 7.977293 AGGTTTGTGCTAAAAACGACTAATTTT 59.023 29.630 0.00 0.00 38.21 1.82
717 718 7.485810 AGGTTTGTGCTAAAAACGACTAATTT 58.514 30.769 0.00 0.00 38.21 1.82
718 719 7.034685 AGGTTTGTGCTAAAAACGACTAATT 57.965 32.000 0.00 0.00 38.21 1.40
719 720 6.628919 AGGTTTGTGCTAAAAACGACTAAT 57.371 33.333 0.00 0.00 38.21 1.73
720 721 7.733402 ATAGGTTTGTGCTAAAAACGACTAA 57.267 32.000 0.00 0.00 38.21 2.24
721 722 8.306038 TCTATAGGTTTGTGCTAAAAACGACTA 58.694 33.333 0.00 0.00 38.21 2.59
722 723 7.156673 TCTATAGGTTTGTGCTAAAAACGACT 58.843 34.615 0.00 0.00 38.21 4.18
723 724 7.355332 TCTATAGGTTTGTGCTAAAAACGAC 57.645 36.000 0.00 0.00 38.21 4.34
724 725 7.966246 TTCTATAGGTTTGTGCTAAAAACGA 57.034 32.000 0.00 0.00 38.21 3.85
725 726 9.061610 CATTTCTATAGGTTTGTGCTAAAAACG 57.938 33.333 0.00 0.00 38.21 3.60
726 727 9.908152 ACATTTCTATAGGTTTGTGCTAAAAAC 57.092 29.630 0.00 0.00 36.90 2.43
727 728 9.906660 CACATTTCTATAGGTTTGTGCTAAAAA 57.093 29.630 13.29 0.00 0.00 1.94
734 735 6.375455 AGGAAGCACATTTCTATAGGTTTGTG 59.625 38.462 17.97 17.97 37.96 3.33
735 736 6.375455 CAGGAAGCACATTTCTATAGGTTTGT 59.625 38.462 0.00 0.00 0.00 2.83
736 737 6.678900 GCAGGAAGCACATTTCTATAGGTTTG 60.679 42.308 0.00 0.00 44.79 2.93
737 738 5.358160 GCAGGAAGCACATTTCTATAGGTTT 59.642 40.000 0.00 0.00 44.79 3.27
738 739 4.884164 GCAGGAAGCACATTTCTATAGGTT 59.116 41.667 0.00 0.00 44.79 3.50
739 740 4.455606 GCAGGAAGCACATTTCTATAGGT 58.544 43.478 0.00 0.00 44.79 3.08
753 754 1.166531 AGTCCACGTTTGCAGGAAGC 61.167 55.000 0.00 0.00 45.96 3.86
754 755 1.264288 GAAGTCCACGTTTGCAGGAAG 59.736 52.381 0.00 0.00 32.30 3.46
755 756 1.305201 GAAGTCCACGTTTGCAGGAA 58.695 50.000 0.00 0.00 32.30 3.36
756 757 0.179234 TGAAGTCCACGTTTGCAGGA 59.821 50.000 0.00 0.00 0.00 3.86
757 758 1.021202 TTGAAGTCCACGTTTGCAGG 58.979 50.000 0.00 0.00 0.00 4.85
758 759 2.033299 ACATTGAAGTCCACGTTTGCAG 59.967 45.455 0.00 0.00 0.00 4.41
759 760 2.020720 ACATTGAAGTCCACGTTTGCA 58.979 42.857 0.00 0.00 0.00 4.08
760 761 2.650608 GACATTGAAGTCCACGTTTGC 58.349 47.619 0.00 0.00 32.36 3.68
761 762 2.542178 TCGACATTGAAGTCCACGTTTG 59.458 45.455 0.00 0.00 35.07 2.93
762 763 2.828877 TCGACATTGAAGTCCACGTTT 58.171 42.857 0.00 0.00 35.07 3.60
763 764 2.519377 TCGACATTGAAGTCCACGTT 57.481 45.000 0.00 0.00 35.07 3.99
764 765 2.337583 CATCGACATTGAAGTCCACGT 58.662 47.619 0.00 0.00 35.07 4.49
765 766 1.660607 CCATCGACATTGAAGTCCACG 59.339 52.381 0.00 0.00 35.07 4.94
766 767 1.398390 GCCATCGACATTGAAGTCCAC 59.602 52.381 0.00 0.00 35.07 4.02
767 768 1.278985 AGCCATCGACATTGAAGTCCA 59.721 47.619 0.00 0.00 35.07 4.02
768 769 2.029838 AGCCATCGACATTGAAGTCC 57.970 50.000 0.00 0.00 35.07 3.85
769 770 4.161333 CAAAAGCCATCGACATTGAAGTC 58.839 43.478 0.00 0.00 35.19 3.01
770 771 3.569701 ACAAAAGCCATCGACATTGAAGT 59.430 39.130 0.00 0.00 0.00 3.01
771 772 4.164822 ACAAAAGCCATCGACATTGAAG 57.835 40.909 0.00 0.00 0.00 3.02
772 773 5.697473 TTACAAAAGCCATCGACATTGAA 57.303 34.783 0.00 0.00 0.00 2.69
773 774 5.895636 ATTACAAAAGCCATCGACATTGA 57.104 34.783 0.00 0.00 0.00 2.57
774 775 6.033831 GTGAATTACAAAAGCCATCGACATTG 59.966 38.462 0.00 0.00 0.00 2.82
792 793 3.670625 CCAACCTTGGTCGAGTGAATTA 58.329 45.455 0.00 0.00 43.43 1.40
835 836 3.624900 CCAATGATAACAGCAGCAATCG 58.375 45.455 0.00 0.00 0.00 3.34
939 940 1.806247 CGCCTCGCCTTGTATGATTGA 60.806 52.381 0.00 0.00 0.00 2.57
1004 1011 1.309499 CGCCTCCGAAGTCTGAGTCT 61.309 60.000 0.00 0.00 36.29 3.24
1014 1021 2.036731 TCCTTCTCCGCCTCCGAA 59.963 61.111 0.00 0.00 36.29 4.30
1093 1100 2.670148 GGAGGGTGGAGTTGCGGAT 61.670 63.158 0.00 0.00 0.00 4.18
1154 6005 0.960364 GATGGAAAGCACGAAGGGCA 60.960 55.000 0.00 0.00 0.00 5.36
1156 6007 1.369091 CGGATGGAAAGCACGAAGGG 61.369 60.000 0.00 0.00 0.00 3.95
1166 6017 1.140252 GCCTTAGCTACCGGATGGAAA 59.860 52.381 9.46 0.00 35.86 3.13
1295 6235 5.106442 CGTTTTTGGTAGGCCATATTTTCC 58.894 41.667 5.01 0.00 45.56 3.13
1302 6242 2.579410 AGACGTTTTTGGTAGGCCAT 57.421 45.000 5.01 0.00 45.56 4.40
1330 6270 0.833287 GCATCTACTTCCTCTGGCCA 59.167 55.000 4.71 4.71 0.00 5.36
1333 6273 2.702478 TCATGGCATCTACTTCCTCTGG 59.298 50.000 0.00 0.00 0.00 3.86
1354 6295 3.123804 CACAGAACAGTTTCAGTACGCT 58.876 45.455 0.00 0.00 30.71 5.07
1422 6363 5.852282 ATCACCATGGTAGTAAAATTGGC 57.148 39.130 19.28 0.00 0.00 4.52
1473 6414 2.812591 TGAGAACAGAGAGGTACGTGTC 59.187 50.000 0.00 4.64 0.00 3.67
1488 6429 3.662186 CGTTTTGGTGCGTATTTGAGAAC 59.338 43.478 0.00 0.00 0.00 3.01
1515 6460 7.584987 ACTAATGTACACAGTGAAGAAAATGC 58.415 34.615 7.81 0.00 0.00 3.56
1551 6503 5.362556 ACCGAACAAAATCAGAGATGTTG 57.637 39.130 8.07 8.07 36.22 3.33
1771 7064 6.535508 GGTCCACTTACTCTTCATAATCACAC 59.464 42.308 0.00 0.00 0.00 3.82
1778 7071 6.650120 GGAAATGGTCCACTTACTCTTCATA 58.350 40.000 0.00 0.00 46.97 2.15
1862 7159 8.856490 AAGTACACAATTTCAAAGATGTTCAC 57.144 30.769 0.00 0.00 0.00 3.18
1931 7230 5.355350 AACCAGAGTTAATAAGCAGACATGC 59.645 40.000 0.00 0.00 43.30 4.06
2019 7318 4.993905 TGTATCATGGTCAGTCGTAAGTG 58.006 43.478 0.00 0.00 39.48 3.16
2194 7497 6.256643 TCCAAAAGTAGAACCTTAGGTGTT 57.743 37.500 3.99 0.00 35.34 3.32
2276 7586 1.074752 GCGGTGAGAGCAAAAGAGAG 58.925 55.000 0.00 0.00 34.19 3.20
2392 7720 6.971602 TGGCGTACAACTTAATTTTTCATCA 58.028 32.000 0.00 0.00 0.00 3.07
2413 7741 1.270252 CCACCCAAAACACTCATTGGC 60.270 52.381 0.00 0.00 43.84 4.52
2424 7752 0.457851 CTTTGTGTCGCCACCCAAAA 59.542 50.000 0.00 0.00 41.09 2.44
2740 8080 6.054295 TCCCTTCACAAATTTTGGAAACATG 58.946 36.000 13.42 0.00 42.32 3.21
2747 8087 4.935352 TGTCTCCCTTCACAAATTTTGG 57.065 40.909 13.42 3.24 34.12 3.28
2771 8111 1.134580 GCATGTTCTAGAGCAGGCAGA 60.135 52.381 32.44 3.17 46.07 4.26
2879 8220 7.515643 CAAACGGTACTTCGAGAAAATAATGT 58.484 34.615 0.00 0.00 0.00 2.71
3126 8477 3.778075 TGGAAGTTAGGTAAGCATGCCTA 59.222 43.478 15.66 2.10 42.31 3.93
3129 8480 4.095036 GTCTTGGAAGTTAGGTAAGCATGC 59.905 45.833 10.51 10.51 0.00 4.06
3157 8508 3.550437 AACATATCTCCACCTGCAGAC 57.450 47.619 17.39 0.00 0.00 3.51
3191 8542 4.489771 GGGGTGCCTCCGGTCATG 62.490 72.222 0.00 0.00 37.00 3.07
3339 8703 1.477685 ATCGACAGGGGGTGTTTCGT 61.478 55.000 0.00 0.00 40.56 3.85
3547 8913 3.577649 TCTTGCTAAGACCTGACGAAG 57.422 47.619 0.00 0.00 31.20 3.79
3751 9166 8.608185 AGATTTCTATTCTATCCATCTCCTCC 57.392 38.462 0.00 0.00 0.00 4.30
3870 9289 1.237285 TGAAAAGGCAGCGCTCCTTC 61.237 55.000 29.24 22.04 42.75 3.46
3871 9290 0.610232 ATGAAAAGGCAGCGCTCCTT 60.610 50.000 25.91 25.91 45.31 3.36
3918 9337 3.438781 TCCAAATAACTGAATCACGGTGC 59.561 43.478 2.51 0.00 38.23 5.01
3946 9365 2.124277 AAGGAAATACTGAACCGCCC 57.876 50.000 0.00 0.00 0.00 6.13
3968 9387 3.644966 AACAACTGTTCTGGTTCAGGA 57.355 42.857 0.00 0.00 36.17 3.86
3990 9409 4.778534 TCCGTTAACAAACAACCAAACA 57.221 36.364 6.39 0.00 0.00 2.83
4180 9638 9.872721 TTGCAAATCTTATCAAATTAGCATTCA 57.127 25.926 0.00 0.00 0.00 2.57
4198 9656 2.939460 ATTACCCTGCGTTGCAAATC 57.061 45.000 0.00 0.00 38.41 2.17
4254 9724 0.257905 GAGGCCGGGGATTTAACCTT 59.742 55.000 2.18 0.00 0.00 3.50
4256 9726 1.134228 TAGAGGCCGGGGATTTAACC 58.866 55.000 2.18 0.00 0.00 2.85
4257 9727 1.487558 TGTAGAGGCCGGGGATTTAAC 59.512 52.381 2.18 0.00 0.00 2.01
4258 9728 1.882308 TGTAGAGGCCGGGGATTTAA 58.118 50.000 2.18 0.00 0.00 1.52
4362 9907 4.454161 CACCACAATGTAAAAGATCCGACA 59.546 41.667 0.00 0.00 0.00 4.35
4371 9916 4.950475 TCACCAGTTCACCACAATGTAAAA 59.050 37.500 0.00 0.00 0.00 1.52
4467 10143 4.577693 CCTAAAGTGCACACATGAGCATAT 59.422 41.667 21.04 0.00 43.06 1.78
4483 10193 1.609841 CCGACCGGAAAAGCCTAAAGT 60.610 52.381 9.46 0.00 37.50 2.66
4484 10194 1.084289 CCGACCGGAAAAGCCTAAAG 58.916 55.000 9.46 0.00 37.50 1.85
4544 10779 8.281531 ACCCAACTCATATGGATGATCTTAAAA 58.718 33.333 2.13 0.00 41.33 1.52
4547 10782 6.295292 CGACCCAACTCATATGGATGATCTTA 60.295 42.308 2.13 0.00 41.33 2.10
4548 10783 5.512060 CGACCCAACTCATATGGATGATCTT 60.512 44.000 2.13 0.00 41.33 2.40
4549 10784 4.020751 CGACCCAACTCATATGGATGATCT 60.021 45.833 2.13 0.00 41.33 2.75
4551 10786 3.008375 CCGACCCAACTCATATGGATGAT 59.992 47.826 2.13 0.00 41.33 2.45
4552 10787 2.368548 CCGACCCAACTCATATGGATGA 59.631 50.000 2.13 0.00 40.56 2.92
4554 10789 2.634940 CTCCGACCCAACTCATATGGAT 59.365 50.000 2.13 0.00 40.56 3.41
4556 10791 1.762957 ACTCCGACCCAACTCATATGG 59.237 52.381 2.13 0.00 37.71 2.74
4557 10792 2.826428 CACTCCGACCCAACTCATATG 58.174 52.381 0.00 0.00 0.00 1.78
4558 10793 1.139058 GCACTCCGACCCAACTCATAT 59.861 52.381 0.00 0.00 0.00 1.78
4559 10794 0.535335 GCACTCCGACCCAACTCATA 59.465 55.000 0.00 0.00 0.00 2.15
4560 10795 1.194781 AGCACTCCGACCCAACTCAT 61.195 55.000 0.00 0.00 0.00 2.90
4561 10796 1.407656 AAGCACTCCGACCCAACTCA 61.408 55.000 0.00 0.00 0.00 3.41
4562 10797 0.670854 GAAGCACTCCGACCCAACTC 60.671 60.000 0.00 0.00 0.00 3.01
4563 10798 1.371558 GAAGCACTCCGACCCAACT 59.628 57.895 0.00 0.00 0.00 3.16
4564 10799 2.027625 CGAAGCACTCCGACCCAAC 61.028 63.158 0.00 0.00 0.00 3.77
4565 10800 2.342279 CGAAGCACTCCGACCCAA 59.658 61.111 0.00 0.00 0.00 4.12
4566 10801 2.915659 ACGAAGCACTCCGACCCA 60.916 61.111 0.00 0.00 0.00 4.51
4567 10802 2.432628 CACGAAGCACTCCGACCC 60.433 66.667 0.00 0.00 0.00 4.46
4568 10803 3.112709 GCACGAAGCACTCCGACC 61.113 66.667 0.00 0.00 44.79 4.79
4618 11441 9.499479 GAATACACAACTCATATGGATGATCTT 57.501 33.333 2.13 0.00 41.33 2.40
4621 11444 8.654094 TCTGAATACACAACTCATATGGATGAT 58.346 33.333 2.13 0.00 41.33 2.45
4630 11453 5.882557 GGGTGAATCTGAATACACAACTCAT 59.117 40.000 0.00 0.00 35.33 2.90
4631 11454 5.245531 GGGTGAATCTGAATACACAACTCA 58.754 41.667 0.00 0.00 35.33 3.41
4632 11455 4.636206 GGGGTGAATCTGAATACACAACTC 59.364 45.833 0.00 0.00 35.33 3.01
4634 11457 4.589908 AGGGGTGAATCTGAATACACAAC 58.410 43.478 0.00 0.00 35.33 3.32
4635 11458 4.927267 AGGGGTGAATCTGAATACACAA 57.073 40.909 0.00 0.00 35.33 3.33
4637 11460 4.101741 AGCTAGGGGTGAATCTGAATACAC 59.898 45.833 0.00 0.00 0.00 2.90
4638 11461 4.298626 AGCTAGGGGTGAATCTGAATACA 58.701 43.478 0.00 0.00 0.00 2.29
4639 11462 4.965200 AGCTAGGGGTGAATCTGAATAC 57.035 45.455 0.00 0.00 0.00 1.89
4655 11478 7.455008 TCCAAGGATAAACCCTAGATAAGCTAG 59.545 40.741 0.00 0.00 45.12 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.