Multiple sequence alignment - TraesCS2D01G128600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G128600 chr2D 100.000 5095 0 0 1 5095 74969992 74964898 0.000000e+00 9409.0
1 TraesCS2D01G128600 chr2D 88.203 551 58 6 2410 2958 74950867 74950322 0.000000e+00 651.0
2 TraesCS2D01G128600 chr2D 84.992 653 69 15 948 1587 74953042 74952406 2.000000e-178 636.0
3 TraesCS2D01G128600 chr2D 91.304 161 14 0 2433 2593 145674108 145673948 2.390000e-53 220.0
4 TraesCS2D01G128600 chr2B 93.490 3625 167 36 593 4183 114063702 114060113 0.000000e+00 5323.0
5 TraesCS2D01G128600 chr2B 88.160 549 58 6 2410 2956 114053554 114053011 0.000000e+00 647.0
6 TraesCS2D01G128600 chr2B 84.195 658 75 15 925 1570 114056850 114056210 3.370000e-171 612.0
7 TraesCS2D01G128600 chr2B 87.473 455 38 10 4656 5095 114059576 114059126 1.640000e-139 507.0
8 TraesCS2D01G128600 chr2B 82.340 453 60 10 4658 5095 409350409 409350856 4.820000e-100 375.0
9 TraesCS2D01G128600 chr2B 83.375 397 54 7 3070 3457 114052851 114052458 1.740000e-94 357.0
10 TraesCS2D01G128600 chr2B 86.667 315 42 0 3129 3443 114050209 114049895 2.920000e-92 350.0
11 TraesCS2D01G128600 chr2B 87.678 211 20 4 147 353 114064368 114064160 1.830000e-59 241.0
12 TraesCS2D01G128600 chr2B 94.928 138 7 0 4307 4444 114060045 114059908 3.090000e-52 217.0
13 TraesCS2D01G128600 chr2B 91.912 136 7 3 464 598 114064073 114063941 2.420000e-43 187.0
14 TraesCS2D01G128600 chr2B 92.473 93 7 0 2433 2525 205479259 205479351 3.200000e-27 134.0
15 TraesCS2D01G128600 chr2B 92.473 93 7 0 2433 2525 205530404 205530496 3.200000e-27 134.0
16 TraesCS2D01G128600 chr2A 93.087 2083 82 34 2386 4435 74137595 74135542 0.000000e+00 2992.0
17 TraesCS2D01G128600 chr2A 97.112 658 12 3 1034 1686 74138982 74138327 0.000000e+00 1103.0
18 TraesCS2D01G128600 chr2A 92.222 720 30 14 653 1356 74140187 74139478 0.000000e+00 996.0
19 TraesCS2D01G128600 chr2A 90.264 719 36 17 1618 2307 74138327 74137614 0.000000e+00 909.0
20 TraesCS2D01G128600 chr2A 86.212 631 74 11 948 1570 74120020 74119395 0.000000e+00 671.0
21 TraesCS2D01G128600 chr2A 88.385 551 57 6 2410 2958 74117896 74117351 0.000000e+00 656.0
22 TraesCS2D01G128600 chr2A 84.833 389 57 2 3070 3457 74117197 74116810 1.720000e-104 390.0
23 TraesCS2D01G128600 chr2A 94.118 221 12 1 4656 4875 74135170 74134950 8.170000e-88 335.0
24 TraesCS2D01G128600 chr2A 96.032 126 5 0 1 126 729555122 729555247 6.690000e-49 206.0
25 TraesCS2D01G128600 chr2A 94.574 129 6 1 1 128 74134284 74134412 1.120000e-46 198.0
26 TraesCS2D01G128600 chr2A 96.522 115 4 0 4498 4612 74135454 74135340 1.870000e-44 191.0
27 TraesCS2D01G128600 chr2A 91.912 136 9 2 464 598 74140708 74140574 6.730000e-44 189.0
28 TraesCS2D01G128600 chr2A 95.918 49 2 0 5047 5095 74134151 74134103 4.230000e-11 80.5
29 TraesCS2D01G128600 chr2A 92.000 50 4 0 4609 4658 74135291 74135242 2.550000e-08 71.3
30 TraesCS2D01G128600 chr1D 90.169 590 47 10 2423 3007 459051111 459050528 0.000000e+00 758.0
31 TraesCS2D01G128600 chr1D 86.618 680 62 19 904 1570 459053509 459052846 0.000000e+00 725.0
32 TraesCS2D01G128600 chr1D 85.088 456 53 7 3008 3457 459050480 459050034 7.780000e-123 451.0
33 TraesCS2D01G128600 chr1D 84.581 454 51 11 4656 5095 492106847 492106399 2.820000e-117 433.0
34 TraesCS2D01G128600 chr1D 81.898 453 65 8 4656 5095 319622450 319622002 2.900000e-97 366.0
35 TraesCS2D01G128600 chr1D 92.233 206 13 3 1933 2136 459052265 459052061 6.450000e-74 289.0
36 TraesCS2D01G128600 chr1D 95.161 124 4 2 1 124 116930187 116930066 1.450000e-45 195.0
37 TraesCS2D01G128600 chr1D 84.615 117 12 4 4501 4612 319628855 319628740 1.500000e-20 111.0
38 TraesCS2D01G128600 chr1D 97.059 34 1 0 4452 4485 319628880 319628913 1.980000e-04 58.4
39 TraesCS2D01G128600 chr1D 88.636 44 3 2 440 481 100121800 100121757 9.000000e-03 52.8
40 TraesCS2D01G128600 chr1A 87.481 671 63 16 904 1570 551487686 551487033 0.000000e+00 754.0
41 TraesCS2D01G128600 chr1A 90.000 590 46 11 2423 3007 551485746 551485165 0.000000e+00 750.0
42 TraesCS2D01G128600 chr1A 78.983 885 118 39 3008 3842 551485117 551484251 4.490000e-150 542.0
43 TraesCS2D01G128600 chr1A 93.122 189 11 2 1933 2121 551486654 551486468 5.020000e-70 276.0
44 TraesCS2D01G128600 chr1B 86.988 684 56 19 904 1570 631232402 631231735 0.000000e+00 739.0
45 TraesCS2D01G128600 chr1B 89.519 582 50 9 2432 3007 631230297 631229721 0.000000e+00 726.0
46 TraesCS2D01G128600 chr1B 88.740 373 40 2 3070 3440 631229617 631229245 6.010000e-124 455.0
47 TraesCS2D01G128600 chr1B 91.748 206 14 3 1933 2136 631231250 631231046 3.000000e-72 283.0
48 TraesCS2D01G128600 chr1B 94.355 124 7 0 1 124 682021483 682021360 1.870000e-44 191.0
49 TraesCS2D01G128600 chr6A 83.885 453 53 10 4656 5095 72428086 72427641 1.020000e-111 414.0
50 TraesCS2D01G128600 chr6D 83.486 436 50 7 4656 5077 57184104 57183677 2.220000e-103 387.0
51 TraesCS2D01G128600 chr6D 94.355 124 7 0 1 124 7038082 7037959 1.870000e-44 191.0
52 TraesCS2D01G128600 chr6D 88.636 44 5 0 440 483 16703114 16703157 3.000000e-03 54.7
53 TraesCS2D01G128600 chr6D 88.636 44 4 1 440 482 5831524 5831481 9.000000e-03 52.8
54 TraesCS2D01G128600 chr7B 82.472 445 62 7 4656 5088 62823123 62822683 4.820000e-100 375.0
55 TraesCS2D01G128600 chr7A 82.550 447 56 9 4661 5095 565704797 565704361 1.730000e-99 374.0
56 TraesCS2D01G128600 chr7A 84.615 117 12 4 4501 4612 565705045 565704930 1.500000e-20 111.0
57 TraesCS2D01G128600 chr7A 82.353 119 17 1 4498 4612 429060333 429060215 3.250000e-17 100.0
58 TraesCS2D01G128600 chr7A 86.111 72 10 0 4542 4613 691985421 691985350 1.520000e-10 78.7
59 TraesCS2D01G128600 chr5D 80.837 454 68 9 4656 5095 558725089 558725537 6.320000e-89 339.0
60 TraesCS2D01G128600 chr3D 95.968 124 5 0 1 124 590751877 590751754 8.650000e-48 202.0
61 TraesCS2D01G128600 chr3D 93.548 124 8 0 1 124 525642963 525643086 8.710000e-43 185.0
62 TraesCS2D01G128600 chr3A 94.355 124 7 0 1 124 547381178 547381301 1.870000e-44 191.0
63 TraesCS2D01G128600 chr5A 92.913 127 9 0 1 127 334341565 334341691 8.710000e-43 185.0
64 TraesCS2D01G128600 chr7D 85.000 120 12 4 4498 4612 580703172 580703290 3.220000e-22 117.0
65 TraesCS2D01G128600 chr7D 90.476 42 2 2 440 480 64381235 64381195 3.000000e-03 54.7
66 TraesCS2D01G128600 chr4A 90.141 71 7 0 4542 4612 440691360 440691430 5.430000e-15 93.5
67 TraesCS2D01G128600 chr4A 90.141 71 7 0 4542 4612 449776669 449776599 5.430000e-15 93.5
68 TraesCS2D01G128600 chr4A 100.000 33 0 0 440 472 290371441 290371409 1.530000e-05 62.1
69 TraesCS2D01G128600 chr4D 93.333 60 4 0 4542 4601 294991482 294991423 7.030000e-14 89.8
70 TraesCS2D01G128600 chr4D 85.714 56 1 5 418 467 121076950 121077004 9.000000e-03 52.8
71 TraesCS2D01G128600 chr3B 93.333 45 3 0 4610 4654 772477216 772477260 3.290000e-07 67.6
72 TraesCS2D01G128600 chr3B 100.000 34 0 0 440 473 140915185 140915152 4.260000e-06 63.9
73 TraesCS2D01G128600 chr3B 97.143 35 0 1 435 469 104382435 104382468 1.980000e-04 58.4
74 TraesCS2D01G128600 chrUn 94.737 38 0 1 440 475 162568768 162568731 1.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G128600 chr2D 74964898 74969992 5094 True 9409.000000 9409 100.000000 1 5095 1 chr2D.!!$R1 5094
1 TraesCS2D01G128600 chr2D 74950322 74953042 2720 True 643.500000 651 86.597500 948 2958 2 chr2D.!!$R3 2010
2 TraesCS2D01G128600 chr2B 114049895 114064368 14473 True 937.888889 5323 88.653111 147 5095 9 chr2B.!!$R1 4948
3 TraesCS2D01G128600 chr2A 74134103 74140708 6605 True 762.977778 2992 93.683889 464 5095 9 chr2A.!!$R2 4631
4 TraesCS2D01G128600 chr2A 74116810 74120020 3210 True 572.333333 671 86.476667 948 3457 3 chr2A.!!$R1 2509
5 TraesCS2D01G128600 chr1D 459050034 459053509 3475 True 555.750000 758 88.527000 904 3457 4 chr1D.!!$R6 2553
6 TraesCS2D01G128600 chr1A 551484251 551487686 3435 True 580.500000 754 87.396500 904 3842 4 chr1A.!!$R1 2938
7 TraesCS2D01G128600 chr1B 631229245 631232402 3157 True 550.750000 739 89.248750 904 3440 4 chr1B.!!$R2 2536
8 TraesCS2D01G128600 chr7A 565704361 565705045 684 True 242.500000 374 83.582500 4501 5095 2 chr7A.!!$R3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 515 0.038166 CCCATGAATACCCCATCCGG 59.962 60.000 0.0 0.0 0.00 5.14 F
497 519 0.182537 TGAATACCCCATCCGGCTTG 59.817 55.000 0.0 0.0 0.00 4.01 F
1316 2547 0.680921 CCTTGACGGCCCAATGATGT 60.681 55.000 0.0 0.0 0.00 3.06 F
1644 2951 3.019564 GGTCAATGGTATCTTGCTTGCT 58.980 45.455 0.0 0.0 0.00 3.91 F
1707 3082 5.163088 ACTGGTTGTTTATCAGAGGTTTCCT 60.163 40.000 0.0 0.0 36.03 3.36 F
3362 6227 0.510359 GTGAGAAGCTGCGTGAACAG 59.490 55.000 0.0 0.0 40.80 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 2945 0.035881 TCCCAGAGCAACAGAGCAAG 59.964 55.000 0.00 0.00 36.85 4.01 R
2321 4028 0.682209 AGGGCATCTCACATTGGCAC 60.682 55.000 0.00 0.00 39.97 5.01 R
2324 4031 2.092538 AGAGAAGGGCATCTCACATTGG 60.093 50.000 18.17 0.00 46.73 3.16 R
2660 5463 2.159382 CAATGTCACCACCCAACTACC 58.841 52.381 0.00 0.00 0.00 3.18 R
3482 6350 3.055312 ACCGGGAGACTAATGAAAGAACC 60.055 47.826 6.32 0.00 0.00 3.62 R
4257 7253 0.304098 CGGTCGTCGAGGACTGTATC 59.696 60.000 30.06 16.76 42.43 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.993008 ATGACATGCCGGCTCAGT 59.007 55.556 29.70 22.43 0.00 3.41
18 19 1.153289 ATGACATGCCGGCTCAGTC 60.153 57.895 29.70 28.59 0.00 3.51
19 20 1.620739 ATGACATGCCGGCTCAGTCT 61.621 55.000 31.39 20.84 0.00 3.24
20 21 1.520342 GACATGCCGGCTCAGTCTC 60.520 63.158 29.70 9.51 0.00 3.36
21 22 1.954362 GACATGCCGGCTCAGTCTCT 61.954 60.000 29.70 0.81 0.00 3.10
22 23 1.227205 CATGCCGGCTCAGTCTCTC 60.227 63.158 29.70 0.00 0.00 3.20
23 24 2.780094 ATGCCGGCTCAGTCTCTCG 61.780 63.158 29.70 0.00 0.00 4.04
24 25 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
25 26 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
26 27 2.046864 CCGGCTCAGTCTCTCGGAA 61.047 63.158 0.00 0.00 42.94 4.30
27 28 1.431440 CGGCTCAGTCTCTCGGAAG 59.569 63.158 0.00 0.00 0.00 3.46
28 29 1.309499 CGGCTCAGTCTCTCGGAAGT 61.309 60.000 0.00 0.00 0.00 3.01
29 30 0.172352 GGCTCAGTCTCTCGGAAGTG 59.828 60.000 0.00 0.00 0.00 3.16
30 31 0.457681 GCTCAGTCTCTCGGAAGTGC 60.458 60.000 0.00 0.00 0.00 4.40
31 32 1.173043 CTCAGTCTCTCGGAAGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
32 33 1.132262 CTCAGTCTCTCGGAAGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
33 34 0.884514 CAGTCTCTCGGAAGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
34 35 1.476085 CAGTCTCTCGGAAGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
35 36 2.685388 CAGTCTCTCGGAAGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
36 37 2.948979 AGTCTCTCGGAAGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
37 38 2.034053 GTCTCTCGGAAGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
38 39 1.339610 CTCTCGGAAGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
39 40 1.115467 CTCGGAAGTGCTCATAGGGT 58.885 55.000 0.00 0.00 0.00 4.34
40 41 1.482593 CTCGGAAGTGCTCATAGGGTT 59.517 52.381 0.00 0.00 0.00 4.11
41 42 2.693591 CTCGGAAGTGCTCATAGGGTTA 59.306 50.000 0.00 0.00 0.00 2.85
42 43 2.693591 TCGGAAGTGCTCATAGGGTTAG 59.306 50.000 0.00 0.00 0.00 2.34
43 44 2.224066 CGGAAGTGCTCATAGGGTTAGG 60.224 54.545 0.00 0.00 0.00 2.69
44 45 2.104963 GGAAGTGCTCATAGGGTTAGGG 59.895 54.545 0.00 0.00 0.00 3.53
45 46 2.570386 AGTGCTCATAGGGTTAGGGT 57.430 50.000 0.00 0.00 0.00 4.34
46 47 2.119495 AGTGCTCATAGGGTTAGGGTG 58.881 52.381 0.00 0.00 0.00 4.61
47 48 1.838077 GTGCTCATAGGGTTAGGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
48 49 1.837439 TGCTCATAGGGTTAGGGTGTG 59.163 52.381 0.00 0.00 0.00 3.82
49 50 1.475213 GCTCATAGGGTTAGGGTGTGC 60.475 57.143 0.00 0.00 0.00 4.57
50 51 0.828022 TCATAGGGTTAGGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
51 52 0.539986 CATAGGGTTAGGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
52 53 0.539986 ATAGGGTTAGGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
53 54 0.832983 TAGGGTTAGGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
54 55 1.964373 GGGTTAGGGTGTGCGTGTG 60.964 63.158 0.00 0.00 0.00 3.82
55 56 1.227734 GGTTAGGGTGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
56 57 1.503818 GGTTAGGGTGTGCGTGTGTG 61.504 60.000 0.00 0.00 0.00 3.82
57 58 1.890041 TTAGGGTGTGCGTGTGTGC 60.890 57.895 0.00 0.00 0.00 4.57
60 61 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
61 62 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
62 63 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
63 64 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
64 65 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
65 66 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
66 67 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
67 68 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
68 69 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
69 70 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
70 71 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
71 72 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
72 73 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
73 74 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
74 75 3.028130 TGTGCGTTCATAGGGATGAGTA 58.972 45.455 0.00 0.00 43.03 2.59
75 76 3.641436 TGTGCGTTCATAGGGATGAGTAT 59.359 43.478 0.00 0.00 43.03 2.12
76 77 4.830600 TGTGCGTTCATAGGGATGAGTATA 59.169 41.667 0.00 0.00 43.03 1.47
77 78 5.480422 TGTGCGTTCATAGGGATGAGTATAT 59.520 40.000 0.00 0.00 43.03 0.86
78 79 5.807520 GTGCGTTCATAGGGATGAGTATATG 59.192 44.000 0.00 0.00 43.03 1.78
79 80 4.806247 GCGTTCATAGGGATGAGTATATGC 59.194 45.833 0.00 0.00 43.03 3.14
80 81 5.037385 CGTTCATAGGGATGAGTATATGCG 58.963 45.833 0.00 0.00 43.03 4.73
81 82 4.655762 TCATAGGGATGAGTATATGCGC 57.344 45.455 0.00 0.00 37.15 6.09
82 83 3.066760 TCATAGGGATGAGTATATGCGCG 59.933 47.826 0.00 0.00 37.15 6.86
83 84 1.257743 AGGGATGAGTATATGCGCGT 58.742 50.000 8.43 7.55 0.00 6.01
84 85 2.443416 AGGGATGAGTATATGCGCGTA 58.557 47.619 12.53 12.53 0.00 4.42
85 86 3.024547 AGGGATGAGTATATGCGCGTAT 58.975 45.455 24.52 24.52 0.00 3.06
86 87 3.116300 GGGATGAGTATATGCGCGTATG 58.884 50.000 28.29 0.00 0.00 2.39
87 88 3.428999 GGGATGAGTATATGCGCGTATGT 60.429 47.826 28.29 15.87 0.00 2.29
88 89 4.201980 GGGATGAGTATATGCGCGTATGTA 60.202 45.833 28.29 14.73 0.00 2.29
89 90 5.507482 GGGATGAGTATATGCGCGTATGTAT 60.507 44.000 28.29 17.24 0.00 2.29
90 91 5.399596 GGATGAGTATATGCGCGTATGTATG 59.600 44.000 28.29 0.00 0.00 2.39
91 92 5.554822 TGAGTATATGCGCGTATGTATGA 57.445 39.130 28.29 8.51 0.00 2.15
92 93 5.569413 TGAGTATATGCGCGTATGTATGAG 58.431 41.667 28.29 0.00 0.00 2.90
93 94 4.352039 AGTATATGCGCGTATGTATGAGC 58.648 43.478 28.29 5.65 38.31 4.26
96 97 4.228451 CGCGTATGTATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
97 98 2.506544 CGCGTATGTATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
98 99 0.159554 CGCGTATGTATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
99 100 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
100 101 0.159554 CGTATGTATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
101 102 1.209128 GTATGTATGAGCGCTTGCGT 58.791 50.000 13.26 3.97 45.69 5.24
102 103 1.593006 GTATGTATGAGCGCTTGCGTT 59.407 47.619 13.26 10.61 45.69 4.84
103 104 1.086696 ATGTATGAGCGCTTGCGTTT 58.913 45.000 13.26 5.45 45.69 3.60
104 105 0.165727 TGTATGAGCGCTTGCGTTTG 59.834 50.000 13.26 0.00 45.69 2.93
105 106 0.165944 GTATGAGCGCTTGCGTTTGT 59.834 50.000 13.26 6.11 45.69 2.83
106 107 1.392168 GTATGAGCGCTTGCGTTTGTA 59.608 47.619 13.26 5.22 45.69 2.41
107 108 0.165944 ATGAGCGCTTGCGTTTGTAC 59.834 50.000 13.26 0.00 45.69 2.90
108 109 0.878523 TGAGCGCTTGCGTTTGTACT 60.879 50.000 13.26 3.73 45.69 2.73
109 110 0.451135 GAGCGCTTGCGTTTGTACTG 60.451 55.000 13.26 0.00 45.69 2.74
110 111 0.878523 AGCGCTTGCGTTTGTACTGA 60.879 50.000 16.38 0.00 45.69 3.41
111 112 0.165944 GCGCTTGCGTTTGTACTGAT 59.834 50.000 16.38 0.00 0.00 2.90
112 113 1.869503 CGCTTGCGTTTGTACTGATG 58.130 50.000 6.86 0.00 0.00 3.07
113 114 1.194547 CGCTTGCGTTTGTACTGATGT 59.805 47.619 6.86 0.00 0.00 3.06
114 115 2.349438 CGCTTGCGTTTGTACTGATGTT 60.349 45.455 6.86 0.00 0.00 2.71
115 116 3.226347 GCTTGCGTTTGTACTGATGTTC 58.774 45.455 0.00 0.00 0.00 3.18
116 117 3.303725 GCTTGCGTTTGTACTGATGTTCA 60.304 43.478 0.00 0.00 0.00 3.18
117 118 4.788201 GCTTGCGTTTGTACTGATGTTCAA 60.788 41.667 0.00 0.00 32.86 2.69
118 119 4.884458 TGCGTTTGTACTGATGTTCAAA 57.116 36.364 0.00 0.00 39.80 2.69
119 120 5.236655 TGCGTTTGTACTGATGTTCAAAA 57.763 34.783 0.00 0.00 42.25 2.44
120 121 5.641709 TGCGTTTGTACTGATGTTCAAAAA 58.358 33.333 0.00 0.00 42.25 1.94
136 137 2.948448 AAAAACCCACCCCCTCCC 59.052 61.111 0.00 0.00 0.00 4.30
137 138 2.797075 AAAAACCCACCCCCTCCCC 61.797 63.158 0.00 0.00 0.00 4.81
142 143 2.952359 CCACCCCCTCCCCCATTT 60.952 66.667 0.00 0.00 0.00 2.32
143 144 2.364160 CACCCCCTCCCCCATTTG 59.636 66.667 0.00 0.00 0.00 2.32
144 145 2.215758 ACCCCCTCCCCCATTTGA 59.784 61.111 0.00 0.00 0.00 2.69
145 146 1.469221 ACCCCCTCCCCCATTTGAA 60.469 57.895 0.00 0.00 0.00 2.69
169 170 1.067425 CAACCAGCCAACCACATGATG 60.067 52.381 0.00 0.00 0.00 3.07
185 186 5.296035 CACATGATGCCATATATGCCTGTAG 59.704 44.000 7.24 0.00 0.00 2.74
186 187 5.190330 ACATGATGCCATATATGCCTGTAGA 59.810 40.000 7.24 0.00 0.00 2.59
195 198 7.933577 GCCATATATGCCTGTAGATAGCAATAA 59.066 37.037 7.24 0.00 40.46 1.40
221 224 8.857694 TCGACTTTAGACTAATTTTCCCATTT 57.142 30.769 0.00 0.00 0.00 2.32
222 225 9.292195 TCGACTTTAGACTAATTTTCCCATTTT 57.708 29.630 0.00 0.00 0.00 1.82
268 273 6.619801 AAACCTCAATATTAGATTGCGGTC 57.380 37.500 13.55 0.00 43.79 4.79
292 297 1.529948 CCGGCTATCAGTCCCCGTA 60.530 63.158 0.00 0.00 39.12 4.02
299 304 3.737355 GCTATCAGTCCCCGTAAAGTGAC 60.737 52.174 0.00 0.00 0.00 3.67
308 313 4.828939 TCCCCGTAAAGTGACGATGTATAT 59.171 41.667 0.00 0.00 45.82 0.86
309 314 6.003326 TCCCCGTAAAGTGACGATGTATATA 58.997 40.000 0.00 0.00 45.82 0.86
310 315 6.660521 TCCCCGTAAAGTGACGATGTATATAT 59.339 38.462 0.00 0.00 45.82 0.86
374 396 6.183360 GCTATACAACTTCTTTACACGTGACC 60.183 42.308 25.01 0.00 0.00 4.02
387 409 3.190535 ACACGTGACCATCTTTATTTGGC 59.809 43.478 25.01 0.00 36.41 4.52
389 411 3.190535 ACGTGACCATCTTTATTTGGCAC 59.809 43.478 0.00 0.00 36.41 5.01
393 415 2.752903 ACCATCTTTATTTGGCACCGAC 59.247 45.455 0.00 0.00 36.41 4.79
401 423 0.107643 TTTGGCACCGACTGACATGA 59.892 50.000 0.00 0.00 37.91 3.07
411 433 3.372206 CCGACTGACATGACTCCAAATTC 59.628 47.826 0.00 0.00 0.00 2.17
415 437 5.132502 ACTGACATGACTCCAAATTCACAA 58.867 37.500 0.00 0.00 0.00 3.33
441 463 9.997172 AAAAATTACTCCCCTATCTCAAAATCT 57.003 29.630 0.00 0.00 0.00 2.40
442 464 9.997172 AAAATTACTCCCCTATCTCAAAATCTT 57.003 29.630 0.00 0.00 0.00 2.40
456 478 9.672673 ATCTCAAAATCTTATATTATGGGACGG 57.327 33.333 0.00 0.00 0.00 4.79
457 479 8.876181 TCTCAAAATCTTATATTATGGGACGGA 58.124 33.333 0.00 0.00 0.00 4.69
458 480 9.155975 CTCAAAATCTTATATTATGGGACGGAG 57.844 37.037 0.00 0.00 0.00 4.63
459 481 8.100791 TCAAAATCTTATATTATGGGACGGAGG 58.899 37.037 0.00 0.00 0.00 4.30
460 482 6.561519 AATCTTATATTATGGGACGGAGGG 57.438 41.667 0.00 0.00 0.00 4.30
461 483 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
462 484 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
491 513 0.251787 GGCCCATGAATACCCCATCC 60.252 60.000 0.00 0.00 0.00 3.51
492 514 0.609131 GCCCATGAATACCCCATCCG 60.609 60.000 0.00 0.00 0.00 4.18
493 515 0.038166 CCCATGAATACCCCATCCGG 59.962 60.000 0.00 0.00 0.00 5.14
497 519 0.182537 TGAATACCCCATCCGGCTTG 59.817 55.000 0.00 0.00 0.00 4.01
507 529 3.316308 CCCATCCGGCTTGAAAATAAGAG 59.684 47.826 0.00 0.00 0.00 2.85
563 586 4.021456 TCGACCACTAATATGGCATGTAGG 60.021 45.833 10.98 6.80 44.33 3.18
634 901 9.914834 TTTGTAATATACTGGCCTTTTAGACAT 57.085 29.630 3.32 0.00 0.00 3.06
644 911 7.722285 ACTGGCCTTTTAGACATGTAGTAAAAA 59.278 33.333 19.03 13.16 0.00 1.94
645 912 7.878036 TGGCCTTTTAGACATGTAGTAAAAAC 58.122 34.615 19.03 15.39 0.00 2.43
646 913 7.502895 TGGCCTTTTAGACATGTAGTAAAAACA 59.497 33.333 19.03 16.09 0.00 2.83
647 914 8.520351 GGCCTTTTAGACATGTAGTAAAAACAT 58.480 33.333 19.03 0.00 38.08 2.71
714 1085 9.758651 ACACCAGAAAATATAAAAGGTCAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
718 1089 8.424731 CAGAAAATATAAAAGGTCAAAACGCAC 58.575 33.333 0.00 0.00 0.00 5.34
724 1095 2.271821 AGGTCAAAACGCACACAAAC 57.728 45.000 0.00 0.00 0.00 2.93
730 1101 4.206200 GTCAAAACGCACACAAACCTTATG 59.794 41.667 0.00 0.00 0.00 1.90
761 1132 7.775120 AGATAATCACAACCCTGCAAAAATAG 58.225 34.615 0.00 0.00 0.00 1.73
816 1187 2.609350 GCACAAATCATCGCCATTGTT 58.391 42.857 0.00 0.00 33.97 2.83
818 1189 3.181528 GCACAAATCATCGCCATTGTTTG 60.182 43.478 0.00 0.00 33.97 2.93
827 1198 1.486439 GCCATTGTTTGTGGTTCACG 58.514 50.000 0.00 0.00 39.01 4.35
835 1206 2.285827 TTGTGGTTCACGCCTTTTTG 57.714 45.000 0.00 0.00 37.14 2.44
847 1218 8.476925 GTTCACGCCTTTTTGAAATTAGTTTAG 58.523 33.333 0.00 0.00 33.58 1.85
848 1219 7.708998 TCACGCCTTTTTGAAATTAGTTTAGT 58.291 30.769 0.00 0.00 0.00 2.24
849 1220 8.192110 TCACGCCTTTTTGAAATTAGTTTAGTT 58.808 29.630 0.00 0.00 0.00 2.24
850 1221 8.813282 CACGCCTTTTTGAAATTAGTTTAGTTT 58.187 29.630 0.00 0.00 0.00 2.66
1218 2425 1.973281 CGCCCTCAACCAGTGCAAT 60.973 57.895 0.00 0.00 0.00 3.56
1250 2464 3.214123 TATCGTGTCCTCCCGCCG 61.214 66.667 0.00 0.00 0.00 6.46
1282 2508 1.816863 GAGCCCTCGTGTCAAGTCCA 61.817 60.000 0.00 0.00 0.00 4.02
1315 2546 1.386525 CCCTTGACGGCCCAATGATG 61.387 60.000 0.00 0.00 0.00 3.07
1316 2547 0.680921 CCTTGACGGCCCAATGATGT 60.681 55.000 0.00 0.00 0.00 3.06
1574 2809 6.037610 GCAACTCAAGGTGATGGATTTACTAG 59.962 42.308 0.00 0.00 0.00 2.57
1639 2945 4.423625 ACTAGGGTCAATGGTATCTTGC 57.576 45.455 0.00 0.00 0.00 4.01
1640 2946 4.040755 ACTAGGGTCAATGGTATCTTGCT 58.959 43.478 0.00 0.00 0.00 3.91
1644 2951 3.019564 GGTCAATGGTATCTTGCTTGCT 58.980 45.455 0.00 0.00 0.00 3.91
1707 3082 5.163088 ACTGGTTGTTTATCAGAGGTTTCCT 60.163 40.000 0.00 0.00 36.03 3.36
1766 3220 8.810427 CGACAATCATGGAAATTAAAAATCTGG 58.190 33.333 0.00 0.00 0.00 3.86
2212 3919 7.684670 TGATTTCGTTTCAATGTGTATCTAGC 58.315 34.615 0.00 0.00 0.00 3.42
2268 3975 8.200120 TGTTTCAATCCATGTTTGTTCATTACA 58.800 29.630 5.76 0.00 34.12 2.41
2309 4016 7.923414 ATTTGTAGTATTCACTTCCCTTGTC 57.077 36.000 0.00 0.00 36.14 3.18
2310 4017 6.428083 TTGTAGTATTCACTTCCCTTGTCA 57.572 37.500 0.00 0.00 36.14 3.58
2312 4019 6.640518 TGTAGTATTCACTTCCCTTGTCATC 58.359 40.000 0.00 0.00 36.14 2.92
2314 4021 7.618117 TGTAGTATTCACTTCCCTTGTCATCTA 59.382 37.037 0.00 0.00 36.14 1.98
2315 4022 7.496346 AGTATTCACTTCCCTTGTCATCTAA 57.504 36.000 0.00 0.00 0.00 2.10
2317 4024 8.383175 AGTATTCACTTCCCTTGTCATCTAAAA 58.617 33.333 0.00 0.00 0.00 1.52
2320 4027 9.927081 ATTCACTTCCCTTGTCATCTAAAATAT 57.073 29.630 0.00 0.00 0.00 1.28
2321 4028 8.737168 TCACTTCCCTTGTCATCTAAAATATG 57.263 34.615 0.00 0.00 0.00 1.78
2324 4031 6.942532 TCCCTTGTCATCTAAAATATGTGC 57.057 37.500 0.00 0.00 0.00 4.57
2325 4032 5.827797 TCCCTTGTCATCTAAAATATGTGCC 59.172 40.000 0.00 0.00 0.00 5.01
2326 4033 5.593909 CCCTTGTCATCTAAAATATGTGCCA 59.406 40.000 0.00 0.00 0.00 4.92
2373 4288 9.096823 CCCTTCCACACACCTATATATAACTTA 57.903 37.037 0.00 0.00 0.00 2.24
2374 4289 9.924650 CCTTCCACACACCTATATATAACTTAC 57.075 37.037 0.00 0.00 0.00 2.34
2375 4290 9.924650 CTTCCACACACCTATATATAACTTACC 57.075 37.037 0.00 0.00 0.00 2.85
2660 5463 5.147162 GTCCACAATTACTTTTGCTTCTCG 58.853 41.667 0.00 0.00 0.00 4.04
2844 5652 3.760738 TGATATTGCACCAAACCTGACA 58.239 40.909 0.00 0.00 0.00 3.58
3030 5892 8.516811 TTACTGTTCTTCAAGTATTCGAAGAC 57.483 34.615 14.96 14.96 45.48 3.01
3071 5934 8.421249 TGAAACCTTGTGATTCATTTCCTATT 57.579 30.769 7.05 0.00 0.00 1.73
3188 6051 1.201429 ACAAGGGAAGGATGGCTCGT 61.201 55.000 0.00 0.00 0.00 4.18
3221 6084 3.317711 ACAAATGTTCCATTGCTTCACGA 59.682 39.130 0.00 0.00 0.00 4.35
3264 6127 6.396829 AGTTGAAGAGCTTTGTTTGCTAAT 57.603 33.333 0.00 0.00 41.30 1.73
3362 6227 0.510359 GTGAGAAGCTGCGTGAACAG 59.490 55.000 0.00 0.00 40.80 3.16
3481 6349 6.019748 AGGATGATGACGGTAAGGATAGATT 58.980 40.000 0.00 0.00 0.00 2.40
3482 6350 6.071108 AGGATGATGACGGTAAGGATAGATTG 60.071 42.308 0.00 0.00 0.00 2.67
3691 6629 4.241681 CTGGAACCGAGAAGAAGAAGAAG 58.758 47.826 0.00 0.00 0.00 2.85
3948 6902 4.389890 ACCGACTGTTTAAGTGTGTACA 57.610 40.909 0.00 0.00 40.07 2.90
4088 7042 8.045720 AGCTTTCCTAGTTATAAATGGGATGA 57.954 34.615 17.31 9.46 33.65 2.92
4175 7144 6.618287 TGAAACCACTGCTTATATACATGC 57.382 37.500 0.00 0.00 0.00 4.06
4183 7152 5.582269 ACTGCTTATATACATGCTATTGGCG 59.418 40.000 0.00 0.00 45.43 5.69
4184 7153 4.332543 TGCTTATATACATGCTATTGGCGC 59.667 41.667 0.00 0.00 45.43 6.53
4212 7202 9.969001 ATAGTATTAGTGAGAGGAAGGATAGAC 57.031 37.037 0.00 0.00 0.00 2.59
4229 7219 7.442656 AGGATAGACGTGAAAGAAAAAGAAGA 58.557 34.615 0.00 0.00 0.00 2.87
4230 7220 7.600752 AGGATAGACGTGAAAGAAAAAGAAGAG 59.399 37.037 0.00 0.00 0.00 2.85
4231 7221 5.993106 AGACGTGAAAGAAAAAGAAGAGG 57.007 39.130 0.00 0.00 0.00 3.69
4233 7223 6.113411 AGACGTGAAAGAAAAAGAAGAGGAA 58.887 36.000 0.00 0.00 0.00 3.36
4234 7224 6.258947 AGACGTGAAAGAAAAAGAAGAGGAAG 59.741 38.462 0.00 0.00 0.00 3.46
4235 7225 6.113411 ACGTGAAAGAAAAAGAAGAGGAAGA 58.887 36.000 0.00 0.00 0.00 2.87
4237 7227 6.258947 CGTGAAAGAAAAAGAAGAGGAAGAGT 59.741 38.462 0.00 0.00 0.00 3.24
4238 7228 7.201652 CGTGAAAGAAAAAGAAGAGGAAGAGTT 60.202 37.037 0.00 0.00 0.00 3.01
4240 7230 9.853177 TGAAAGAAAAAGAAGAGGAAGAGTTAT 57.147 29.630 0.00 0.00 0.00 1.89
4268 7264 3.957497 ACCTGATGTGAGATACAGTCCTC 59.043 47.826 0.00 0.00 43.80 3.71
4279 7283 1.154263 CAGTCCTCGACGACCGTTC 60.154 63.158 10.44 0.00 37.67 3.95
4357 7362 2.234168 GGAGAGTTGACCTACCCTCAAC 59.766 54.545 3.56 3.56 45.36 3.18
4445 7450 1.076632 CGGAGGGCTGGACTACTCT 60.077 63.158 0.00 0.00 0.00 3.24
4446 7451 1.104577 CGGAGGGCTGGACTACTCTC 61.105 65.000 0.00 0.00 0.00 3.20
4447 7452 0.260523 GGAGGGCTGGACTACTCTCT 59.739 60.000 0.00 0.00 0.00 3.10
4449 7454 1.754226 GAGGGCTGGACTACTCTCTTG 59.246 57.143 0.00 0.00 0.00 3.02
4451 7456 0.176910 GGCTGGACTACTCTCTTGGC 59.823 60.000 0.00 0.00 0.00 4.52
4453 7458 1.484240 GCTGGACTACTCTCTTGGCAT 59.516 52.381 0.00 0.00 0.00 4.40
4454 7459 2.695666 GCTGGACTACTCTCTTGGCATA 59.304 50.000 0.00 0.00 0.00 3.14
4456 7461 4.383118 GCTGGACTACTCTCTTGGCATAAA 60.383 45.833 0.00 0.00 0.00 1.40
4457 7462 5.734720 CTGGACTACTCTCTTGGCATAAAA 58.265 41.667 0.00 0.00 0.00 1.52
4458 7463 6.121776 TGGACTACTCTCTTGGCATAAAAA 57.878 37.500 0.00 0.00 0.00 1.94
4459 7464 6.721318 TGGACTACTCTCTTGGCATAAAAAT 58.279 36.000 0.00 0.00 0.00 1.82
4460 7465 6.823689 TGGACTACTCTCTTGGCATAAAAATC 59.176 38.462 0.00 0.00 0.00 2.17
4461 7466 6.823689 GGACTACTCTCTTGGCATAAAAATCA 59.176 38.462 0.00 0.00 0.00 2.57
4462 7467 7.336931 GGACTACTCTCTTGGCATAAAAATCAA 59.663 37.037 0.00 0.00 0.00 2.57
4465 7470 7.765695 ACTCTCTTGGCATAAAAATCAAAGA 57.234 32.000 0.00 0.00 0.00 2.52
4470 7475 7.601856 TCTTGGCATAAAAATCAAAGAATCGT 58.398 30.769 0.00 0.00 0.00 3.73
4471 7476 7.754924 TCTTGGCATAAAAATCAAAGAATCGTC 59.245 33.333 0.00 0.00 0.00 4.20
4472 7477 6.918626 TGGCATAAAAATCAAAGAATCGTCA 58.081 32.000 0.00 0.00 0.00 4.35
4475 7480 6.527722 GCATAAAAATCAAAGAATCGTCAGCA 59.472 34.615 0.00 0.00 0.00 4.41
4476 7481 7.062138 GCATAAAAATCAAAGAATCGTCAGCAA 59.938 33.333 0.00 0.00 0.00 3.91
4477 7482 8.914654 CATAAAAATCAAAGAATCGTCAGCAAA 58.085 29.630 0.00 0.00 0.00 3.68
4478 7483 6.998258 AAAATCAAAGAATCGTCAGCAAAG 57.002 33.333 0.00 0.00 0.00 2.77
4479 7484 5.947228 AATCAAAGAATCGTCAGCAAAGA 57.053 34.783 0.00 0.00 0.00 2.52
4480 7485 4.997905 TCAAAGAATCGTCAGCAAAGAG 57.002 40.909 0.00 0.00 0.00 2.85
4483 7488 3.244033 AGAATCGTCAGCAAAGAGGAG 57.756 47.619 0.00 0.00 36.06 3.69
4484 7489 2.828520 AGAATCGTCAGCAAAGAGGAGA 59.171 45.455 0.00 0.00 36.06 3.71
4485 7490 2.663826 ATCGTCAGCAAAGAGGAGAC 57.336 50.000 0.00 0.00 36.06 3.36
4486 7491 1.328279 TCGTCAGCAAAGAGGAGACA 58.672 50.000 0.00 0.00 0.00 3.41
4487 7492 1.000163 TCGTCAGCAAAGAGGAGACAC 60.000 52.381 0.00 0.00 0.00 3.67
4490 7495 3.206150 GTCAGCAAAGAGGAGACACAAA 58.794 45.455 0.00 0.00 0.00 2.83
4491 7496 3.627577 GTCAGCAAAGAGGAGACACAAAA 59.372 43.478 0.00 0.00 0.00 2.44
4492 7497 3.627577 TCAGCAAAGAGGAGACACAAAAC 59.372 43.478 0.00 0.00 0.00 2.43
4494 7499 2.287009 GCAAAGAGGAGACACAAAACCG 60.287 50.000 0.00 0.00 0.00 4.44
4495 7500 3.202906 CAAAGAGGAGACACAAAACCGA 58.797 45.455 0.00 0.00 0.00 4.69
4496 7501 3.771577 AAGAGGAGACACAAAACCGAT 57.228 42.857 0.00 0.00 0.00 4.18
4522 7575 4.246458 GCTTTGAAATCAGTCCTAGACGT 58.754 43.478 0.00 0.00 37.67 4.34
4523 7576 4.327627 GCTTTGAAATCAGTCCTAGACGTC 59.672 45.833 7.70 7.70 37.67 4.34
4537 7590 0.810031 GACGTCTATTGTGCCGCCAT 60.810 55.000 8.70 0.00 0.00 4.40
4658 7817 2.552315 GCGAGTGTTTTCAATTCCTGGA 59.448 45.455 0.00 0.00 0.00 3.86
4659 7818 3.365364 GCGAGTGTTTTCAATTCCTGGAG 60.365 47.826 0.00 0.00 0.00 3.86
4699 7932 3.586429 TGGAGGGAAGGAAATTTTGCTT 58.414 40.909 14.78 14.78 44.43 3.91
4780 8015 5.350504 TTTTTGCAAAGGAATCCTTGACA 57.649 34.783 16.25 13.64 43.92 3.58
4818 8053 3.744238 TGTGAAGACGAGGACAATCAA 57.256 42.857 0.00 0.00 0.00 2.57
4918 8519 3.896122 TGTTTCAATCCTAAACAAGCGC 58.104 40.909 0.00 0.00 42.28 5.92
4985 8588 8.862325 TTGAGAGCTAAATATTTTCCTGTTGA 57.138 30.769 5.91 0.00 0.00 3.18
5021 8624 3.425659 CAAGCTTAAAAAGGGGCTCTCT 58.574 45.455 0.00 0.00 33.63 3.10
5022 8625 3.816398 AGCTTAAAAAGGGGCTCTCTT 57.184 42.857 0.00 0.00 0.00 2.85
5023 8626 4.119556 AGCTTAAAAAGGGGCTCTCTTT 57.880 40.909 0.00 0.00 36.15 2.52
5089 8956 3.764237 ATGGTTATATCCGGCGAGTTT 57.236 42.857 9.30 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153289 GACTGAGCCGGCATGTCAT 60.153 57.895 31.54 13.17 0.00 3.06
1 2 2.230994 GAGACTGAGCCGGCATGTCA 62.231 60.000 32.41 25.37 0.00 3.58
2 3 1.520342 GAGACTGAGCCGGCATGTC 60.520 63.158 31.54 29.08 0.00 3.06
5 6 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
6 7 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
7 8 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
8 9 1.999071 CTTCCGAGAGACTGAGCCGG 61.999 65.000 0.00 0.00 41.36 6.13
9 10 1.309499 ACTTCCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 0.00 5.52
10 11 0.172352 CACTTCCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 0.00 4.70
11 12 0.457681 GCACTTCCGAGAGACTGAGC 60.458 60.000 0.00 0.00 0.00 4.26
12 13 1.132262 GAGCACTTCCGAGAGACTGAG 59.868 57.143 0.00 0.00 0.00 3.35
13 14 1.169577 GAGCACTTCCGAGAGACTGA 58.830 55.000 0.00 0.00 0.00 3.41
14 15 0.884514 TGAGCACTTCCGAGAGACTG 59.115 55.000 0.00 0.00 0.00 3.51
15 16 1.846007 ATGAGCACTTCCGAGAGACT 58.154 50.000 0.00 0.00 0.00 3.24
16 17 2.034053 CCTATGAGCACTTCCGAGAGAC 59.966 54.545 0.00 0.00 0.00 3.36
17 18 2.302260 CCTATGAGCACTTCCGAGAGA 58.698 52.381 0.00 0.00 0.00 3.10
18 19 1.339610 CCCTATGAGCACTTCCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
19 20 1.342076 ACCCTATGAGCACTTCCGAGA 60.342 52.381 0.00 0.00 0.00 4.04
20 21 1.115467 ACCCTATGAGCACTTCCGAG 58.885 55.000 0.00 0.00 0.00 4.63
21 22 1.568504 AACCCTATGAGCACTTCCGA 58.431 50.000 0.00 0.00 0.00 4.55
22 23 2.224066 CCTAACCCTATGAGCACTTCCG 60.224 54.545 0.00 0.00 0.00 4.30
23 24 2.104963 CCCTAACCCTATGAGCACTTCC 59.895 54.545 0.00 0.00 0.00 3.46
24 25 2.772515 ACCCTAACCCTATGAGCACTTC 59.227 50.000 0.00 0.00 0.00 3.01
25 26 2.505819 CACCCTAACCCTATGAGCACTT 59.494 50.000 0.00 0.00 0.00 3.16
26 27 2.119495 CACCCTAACCCTATGAGCACT 58.881 52.381 0.00 0.00 0.00 4.40
27 28 1.838077 ACACCCTAACCCTATGAGCAC 59.162 52.381 0.00 0.00 0.00 4.40
28 29 1.837439 CACACCCTAACCCTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
29 30 1.475213 GCACACCCTAACCCTATGAGC 60.475 57.143 0.00 0.00 0.00 4.26
30 31 1.202533 CGCACACCCTAACCCTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
31 32 0.828022 CGCACACCCTAACCCTATGA 59.172 55.000 0.00 0.00 0.00 2.15
32 33 0.539986 ACGCACACCCTAACCCTATG 59.460 55.000 0.00 0.00 0.00 2.23
33 34 0.539986 CACGCACACCCTAACCCTAT 59.460 55.000 0.00 0.00 0.00 2.57
34 35 0.832983 ACACGCACACCCTAACCCTA 60.833 55.000 0.00 0.00 0.00 3.53
35 36 2.144738 ACACGCACACCCTAACCCT 61.145 57.895 0.00 0.00 0.00 4.34
36 37 1.964373 CACACGCACACCCTAACCC 60.964 63.158 0.00 0.00 0.00 4.11
37 38 1.227734 ACACACGCACACCCTAACC 60.228 57.895 0.00 0.00 0.00 2.85
38 39 1.938861 CACACACGCACACCCTAAC 59.061 57.895 0.00 0.00 0.00 2.34
39 40 1.890041 GCACACACGCACACCCTAA 60.890 57.895 0.00 0.00 0.00 2.69
40 41 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
43 44 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
44 45 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
45 46 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
46 47 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
47 48 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
48 49 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
49 50 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
50 51 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
51 52 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
52 53 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
53 54 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
54 55 2.604046 ACTCATCCCTATGAACGCAC 57.396 50.000 0.00 0.00 41.57 5.34
55 56 5.624509 GCATATACTCATCCCTATGAACGCA 60.625 44.000 0.00 0.00 41.57 5.24
56 57 4.806247 GCATATACTCATCCCTATGAACGC 59.194 45.833 0.00 0.00 41.57 4.84
57 58 5.037385 CGCATATACTCATCCCTATGAACG 58.963 45.833 0.00 0.00 41.57 3.95
58 59 4.806247 GCGCATATACTCATCCCTATGAAC 59.194 45.833 0.30 0.00 41.57 3.18
59 60 4.440112 CGCGCATATACTCATCCCTATGAA 60.440 45.833 8.75 0.00 41.57 2.57
60 61 3.066760 CGCGCATATACTCATCCCTATGA 59.933 47.826 8.75 0.00 39.87 2.15
61 62 3.181486 ACGCGCATATACTCATCCCTATG 60.181 47.826 5.73 0.00 0.00 2.23
62 63 3.024547 ACGCGCATATACTCATCCCTAT 58.975 45.455 5.73 0.00 0.00 2.57
63 64 2.443416 ACGCGCATATACTCATCCCTA 58.557 47.619 5.73 0.00 0.00 3.53
64 65 1.257743 ACGCGCATATACTCATCCCT 58.742 50.000 5.73 0.00 0.00 4.20
65 66 2.933495 TACGCGCATATACTCATCCC 57.067 50.000 5.73 0.00 0.00 3.85
66 67 3.770666 ACATACGCGCATATACTCATCC 58.229 45.455 5.73 0.00 0.00 3.51
67 68 6.199393 TCATACATACGCGCATATACTCATC 58.801 40.000 5.73 0.00 0.00 2.92
68 69 6.131544 TCATACATACGCGCATATACTCAT 57.868 37.500 5.73 0.00 0.00 2.90
69 70 5.554822 TCATACATACGCGCATATACTCA 57.445 39.130 5.73 0.00 0.00 3.41
70 71 4.438145 GCTCATACATACGCGCATATACTC 59.562 45.833 5.73 0.00 0.00 2.59
71 72 4.352039 GCTCATACATACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
72 73 3.177838 CGCTCATACATACGCGCATATAC 59.822 47.826 5.73 0.00 39.11 1.47
73 74 3.359654 CGCTCATACATACGCGCATATA 58.640 45.455 5.73 0.00 39.11 0.86
74 75 2.185262 CGCTCATACATACGCGCATAT 58.815 47.619 5.73 0.00 39.11 1.78
75 76 1.613270 CGCTCATACATACGCGCATA 58.387 50.000 5.73 0.00 39.11 3.14
76 77 2.434688 CGCTCATACATACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
77 78 3.916439 CGCTCATACATACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
81 82 0.159554 CGCAAGCGCTCATACATACG 59.840 55.000 12.06 0.00 35.30 3.06
82 83 1.209128 ACGCAAGCGCTCATACATAC 58.791 50.000 12.06 0.00 44.19 2.39
83 84 1.934589 AACGCAAGCGCTCATACATA 58.065 45.000 12.06 0.00 44.19 2.29
84 85 1.086696 AAACGCAAGCGCTCATACAT 58.913 45.000 12.06 0.00 44.19 2.29
85 86 0.165727 CAAACGCAAGCGCTCATACA 59.834 50.000 12.06 0.00 44.19 2.29
86 87 0.165944 ACAAACGCAAGCGCTCATAC 59.834 50.000 12.06 0.00 44.19 2.39
87 88 1.392168 GTACAAACGCAAGCGCTCATA 59.608 47.619 12.06 0.00 44.19 2.15
88 89 0.165944 GTACAAACGCAAGCGCTCAT 59.834 50.000 12.06 0.00 44.19 2.90
89 90 0.878523 AGTACAAACGCAAGCGCTCA 60.879 50.000 12.06 0.00 44.19 4.26
90 91 0.451135 CAGTACAAACGCAAGCGCTC 60.451 55.000 12.06 0.00 44.19 5.03
91 92 0.878523 TCAGTACAAACGCAAGCGCT 60.879 50.000 15.09 2.64 44.19 5.92
92 93 0.165944 ATCAGTACAAACGCAAGCGC 59.834 50.000 15.09 0.00 44.19 5.92
93 94 1.194547 ACATCAGTACAAACGCAAGCG 59.805 47.619 13.50 13.50 46.03 4.68
94 95 2.969443 ACATCAGTACAAACGCAAGC 57.031 45.000 0.00 0.00 45.62 4.01
96 97 4.884458 TTGAACATCAGTACAAACGCAA 57.116 36.364 0.00 0.00 0.00 4.85
97 98 4.884458 TTTGAACATCAGTACAAACGCA 57.116 36.364 0.00 0.00 0.00 5.24
119 120 2.797075 GGGGAGGGGGTGGGTTTTT 61.797 63.158 0.00 0.00 0.00 1.94
120 121 3.197895 GGGGAGGGGGTGGGTTTT 61.198 66.667 0.00 0.00 0.00 2.43
125 126 2.952359 AAATGGGGGAGGGGGTGG 60.952 66.667 0.00 0.00 0.00 4.61
126 127 1.809939 TTCAAATGGGGGAGGGGGTG 61.810 60.000 0.00 0.00 0.00 4.61
127 128 0.859978 ATTCAAATGGGGGAGGGGGT 60.860 55.000 0.00 0.00 0.00 4.95
128 129 0.343018 AATTCAAATGGGGGAGGGGG 59.657 55.000 0.00 0.00 0.00 5.40
129 130 1.692441 GGAATTCAAATGGGGGAGGGG 60.692 57.143 7.93 0.00 0.00 4.79
130 131 1.008206 TGGAATTCAAATGGGGGAGGG 59.992 52.381 7.93 0.00 0.00 4.30
131 132 2.501316 GTTGGAATTCAAATGGGGGAGG 59.499 50.000 7.93 0.00 37.08 4.30
132 133 2.501316 GGTTGGAATTCAAATGGGGGAG 59.499 50.000 7.93 0.00 37.08 4.30
133 134 2.158097 TGGTTGGAATTCAAATGGGGGA 60.158 45.455 7.93 0.00 37.08 4.81
134 135 2.236893 CTGGTTGGAATTCAAATGGGGG 59.763 50.000 7.93 0.00 37.08 5.40
135 136 2.355007 GCTGGTTGGAATTCAAATGGGG 60.355 50.000 7.93 0.00 37.08 4.96
136 137 2.355007 GGCTGGTTGGAATTCAAATGGG 60.355 50.000 7.93 0.00 37.08 4.00
137 138 2.302445 TGGCTGGTTGGAATTCAAATGG 59.698 45.455 7.93 0.00 37.08 3.16
138 139 3.681593 TGGCTGGTTGGAATTCAAATG 57.318 42.857 7.93 0.00 37.08 2.32
139 140 3.244526 GGTTGGCTGGTTGGAATTCAAAT 60.245 43.478 7.93 0.00 37.08 2.32
140 141 2.103941 GGTTGGCTGGTTGGAATTCAAA 59.896 45.455 7.93 0.00 37.08 2.69
141 142 1.691434 GGTTGGCTGGTTGGAATTCAA 59.309 47.619 7.93 0.00 0.00 2.69
142 143 1.337118 GGTTGGCTGGTTGGAATTCA 58.663 50.000 7.93 0.00 0.00 2.57
143 144 1.000843 GTGGTTGGCTGGTTGGAATTC 59.999 52.381 0.00 0.00 0.00 2.17
144 145 1.047801 GTGGTTGGCTGGTTGGAATT 58.952 50.000 0.00 0.00 0.00 2.17
145 146 0.105760 TGTGGTTGGCTGGTTGGAAT 60.106 50.000 0.00 0.00 0.00 3.01
195 198 9.462606 AAATGGGAAAATTAGTCTAAAGTCGAT 57.537 29.630 0.00 0.00 0.00 3.59
216 219 9.167311 GTGATATATAGCACTTCCCTAAAATGG 57.833 37.037 21.13 0.00 39.36 3.16
221 224 7.770366 TTCGTGATATATAGCACTTCCCTAA 57.230 36.000 24.40 9.51 40.23 2.69
222 225 7.770366 TTTCGTGATATATAGCACTTCCCTA 57.230 36.000 24.40 5.65 40.23 3.53
225 228 6.929606 AGGTTTTCGTGATATATAGCACTTCC 59.070 38.462 24.40 18.19 40.23 3.46
226 229 7.652105 TGAGGTTTTCGTGATATATAGCACTTC 59.348 37.037 24.40 8.76 40.23 3.01
268 273 1.593750 GACTGATAGCCGGCTGCAG 60.594 63.158 38.22 38.22 44.83 4.41
274 279 1.111116 TTACGGGGACTGATAGCCGG 61.111 60.000 0.00 0.00 38.67 6.13
350 355 6.864685 TGGTCACGTGTAAAGAAGTTGTATAG 59.135 38.462 16.51 0.00 0.00 1.31
355 377 4.750098 AGATGGTCACGTGTAAAGAAGTTG 59.250 41.667 16.51 0.00 0.00 3.16
365 387 3.190535 GCCAAATAAAGATGGTCACGTGT 59.809 43.478 16.51 0.00 39.00 4.49
368 390 3.427503 GGTGCCAAATAAAGATGGTCACG 60.428 47.826 10.80 0.00 41.00 4.35
374 396 3.689161 TCAGTCGGTGCCAAATAAAGATG 59.311 43.478 0.00 0.00 0.00 2.90
387 409 0.603065 TGGAGTCATGTCAGTCGGTG 59.397 55.000 0.00 0.00 0.00 4.94
389 411 2.455674 TTTGGAGTCATGTCAGTCGG 57.544 50.000 0.00 0.00 0.00 4.79
393 415 5.694231 TTGTGAATTTGGAGTCATGTCAG 57.306 39.130 0.00 0.00 31.87 3.51
415 437 9.997172 AGATTTTGAGATAGGGGAGTAATTTTT 57.003 29.630 0.00 0.00 0.00 1.94
430 452 9.672673 CCGTCCCATAATATAAGATTTTGAGAT 57.327 33.333 0.00 0.00 0.00 2.75
431 453 8.876181 TCCGTCCCATAATATAAGATTTTGAGA 58.124 33.333 0.00 0.00 0.00 3.27
432 454 9.155975 CTCCGTCCCATAATATAAGATTTTGAG 57.844 37.037 0.00 0.00 0.00 3.02
433 455 8.100791 CCTCCGTCCCATAATATAAGATTTTGA 58.899 37.037 0.00 0.00 0.00 2.69
434 456 7.336931 CCCTCCGTCCCATAATATAAGATTTTG 59.663 40.741 0.00 0.00 0.00 2.44
435 457 7.238933 TCCCTCCGTCCCATAATATAAGATTTT 59.761 37.037 0.00 0.00 0.00 1.82
436 458 6.733807 TCCCTCCGTCCCATAATATAAGATTT 59.266 38.462 0.00 0.00 0.00 2.17
437 459 6.269194 TCCCTCCGTCCCATAATATAAGATT 58.731 40.000 0.00 0.00 0.00 2.40
438 460 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
439 461 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
440 462 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
441 463 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
442 464 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
443 465 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
444 466 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
445 467 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
446 468 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
447 469 2.178325 TCATTACTCCCTCCGTCCCATA 59.822 50.000 0.00 0.00 0.00 2.74
448 470 1.062428 TCATTACTCCCTCCGTCCCAT 60.062 52.381 0.00 0.00 0.00 4.00
449 471 0.337082 TCATTACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
450 472 1.492764 TTCATTACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
451 473 3.258622 CCTATTCATTACTCCCTCCGTCC 59.741 52.174 0.00 0.00 0.00 4.79
452 474 3.306156 GCCTATTCATTACTCCCTCCGTC 60.306 52.174 0.00 0.00 0.00 4.79
453 475 2.633481 GCCTATTCATTACTCCCTCCGT 59.367 50.000 0.00 0.00 0.00 4.69
454 476 2.028020 GGCCTATTCATTACTCCCTCCG 60.028 54.545 0.00 0.00 0.00 4.63
455 477 2.306219 GGGCCTATTCATTACTCCCTCC 59.694 54.545 0.84 0.00 0.00 4.30
456 478 2.979678 TGGGCCTATTCATTACTCCCTC 59.020 50.000 4.53 0.00 33.56 4.30
457 479 3.074857 TGGGCCTATTCATTACTCCCT 57.925 47.619 4.53 0.00 33.56 4.20
458 480 3.330701 TCATGGGCCTATTCATTACTCCC 59.669 47.826 4.53 0.00 0.00 4.30
459 481 4.640771 TCATGGGCCTATTCATTACTCC 57.359 45.455 4.53 0.00 0.00 3.85
460 482 6.599638 GGTATTCATGGGCCTATTCATTACTC 59.400 42.308 4.53 0.00 0.00 2.59
461 483 6.485171 GGTATTCATGGGCCTATTCATTACT 58.515 40.000 4.53 0.00 0.00 2.24
462 484 5.652452 GGGTATTCATGGGCCTATTCATTAC 59.348 44.000 4.53 2.40 0.00 1.89
491 513 8.826710 TGTAATATGTCTCTTATTTTCAAGCCG 58.173 33.333 0.00 0.00 0.00 5.52
492 514 9.937175 GTGTAATATGTCTCTTATTTTCAAGCC 57.063 33.333 0.00 0.00 0.00 4.35
507 529 6.554334 ACTTGGTTGTGTGTGTAATATGTC 57.446 37.500 0.00 0.00 0.00 3.06
607 874 9.742144 TGTCTAAAAGGCCAGTATATTACAAAA 57.258 29.630 5.01 0.00 0.00 2.44
615 882 7.670605 ACTACATGTCTAAAAGGCCAGTATA 57.329 36.000 5.01 0.00 0.00 1.47
616 883 6.561519 ACTACATGTCTAAAAGGCCAGTAT 57.438 37.500 5.01 0.00 0.00 2.12
617 884 7.484993 TTACTACATGTCTAAAAGGCCAGTA 57.515 36.000 5.01 0.00 0.00 2.74
618 885 4.910458 ACTACATGTCTAAAAGGCCAGT 57.090 40.909 5.01 0.00 0.00 4.00
619 886 7.681939 TTTTACTACATGTCTAAAAGGCCAG 57.318 36.000 5.01 0.00 0.00 4.85
620 887 7.502895 TGTTTTTACTACATGTCTAAAAGGCCA 59.497 33.333 5.01 7.40 0.00 5.36
679 1049 8.800370 TTTATATTTTCTGGTGTGCATGTCTA 57.200 30.769 0.00 0.00 0.00 2.59
681 1051 7.489113 CCTTTTATATTTTCTGGTGTGCATGTC 59.511 37.037 0.00 0.00 0.00 3.06
743 1114 5.634859 GTGATTCTATTTTTGCAGGGTTGTG 59.365 40.000 0.00 0.00 0.00 3.33
777 1148 1.452110 CCATGCGTGAAAGATGTGGA 58.548 50.000 7.72 0.00 0.00 4.02
816 1187 1.819288 TCAAAAAGGCGTGAACCACAA 59.181 42.857 0.00 0.00 33.40 3.33
818 1189 2.570442 TTCAAAAAGGCGTGAACCAC 57.430 45.000 0.00 0.00 0.00 4.16
850 1221 8.966868 GGTCCATATCAAAACCATCTTTCTTTA 58.033 33.333 0.00 0.00 0.00 1.85
851 1222 7.454380 TGGTCCATATCAAAACCATCTTTCTTT 59.546 33.333 0.00 0.00 36.88 2.52
852 1223 6.953520 TGGTCCATATCAAAACCATCTTTCTT 59.046 34.615 0.00 0.00 36.88 2.52
853 1224 6.493166 TGGTCCATATCAAAACCATCTTTCT 58.507 36.000 0.00 0.00 36.88 2.52
854 1225 6.773976 TGGTCCATATCAAAACCATCTTTC 57.226 37.500 0.00 0.00 36.88 2.62
866 1237 5.089970 GATTGGATCGATGGTCCATATCA 57.910 43.478 0.54 0.00 44.75 2.15
939 1310 3.431411 TTTAGGGAGAGGGGAATGCTA 57.569 47.619 0.00 0.00 0.00 3.49
987 1374 4.660938 GCGGCTGAGGGGTTTGGT 62.661 66.667 0.00 0.00 0.00 3.67
1315 2546 1.408702 ACAAAATCAGCACCCACACAC 59.591 47.619 0.00 0.00 0.00 3.82
1316 2547 1.774110 ACAAAATCAGCACCCACACA 58.226 45.000 0.00 0.00 0.00 3.72
1534 2769 6.578163 TTGAGTTGCTCAATGAATTGATCA 57.422 33.333 6.20 5.91 44.27 2.92
1574 2809 3.374058 ACATACAACAGAAATAGGCGCAC 59.626 43.478 10.83 0.00 0.00 5.34
1639 2945 0.035881 TCCCAGAGCAACAGAGCAAG 59.964 55.000 0.00 0.00 36.85 4.01
1640 2946 0.694771 ATCCCAGAGCAACAGAGCAA 59.305 50.000 0.00 0.00 36.85 3.91
1644 2951 2.957402 AAACATCCCAGAGCAACAGA 57.043 45.000 0.00 0.00 0.00 3.41
1707 3082 9.391006 CAGGACTATTAATTTTACCACTGCTAA 57.609 33.333 0.00 0.00 0.00 3.09
1766 3220 3.299340 TCCGCTCTTTACTGACAAGAC 57.701 47.619 0.00 0.00 0.00 3.01
1778 3243 2.469274 CATAGATGCCATCCGCTCTT 57.531 50.000 0.00 0.00 38.78 2.85
2305 4012 7.975058 CACATTGGCACATATTTTAGATGACAA 59.025 33.333 0.00 0.00 39.30 3.18
2306 4013 7.338957 TCACATTGGCACATATTTTAGATGACA 59.661 33.333 0.00 0.00 39.30 3.58
2307 4014 7.706159 TCACATTGGCACATATTTTAGATGAC 58.294 34.615 0.00 0.00 39.30 3.06
2309 4016 7.933396 TCTCACATTGGCACATATTTTAGATG 58.067 34.615 0.00 0.00 39.30 2.90
2310 4017 8.573885 CATCTCACATTGGCACATATTTTAGAT 58.426 33.333 0.00 0.00 39.30 1.98
2312 4019 6.639686 GCATCTCACATTGGCACATATTTTAG 59.360 38.462 0.00 0.00 39.30 1.85
2314 4021 5.353938 GCATCTCACATTGGCACATATTTT 58.646 37.500 0.00 0.00 39.30 1.82
2315 4022 4.202182 GGCATCTCACATTGGCACATATTT 60.202 41.667 0.00 0.00 39.30 1.40
2317 4024 2.889045 GGCATCTCACATTGGCACATAT 59.111 45.455 0.00 0.00 39.30 1.78
2320 4027 0.966875 GGGCATCTCACATTGGCACA 60.967 55.000 0.00 0.00 39.97 4.57
2321 4028 0.682209 AGGGCATCTCACATTGGCAC 60.682 55.000 0.00 0.00 39.97 5.01
2324 4031 2.092538 AGAGAAGGGCATCTCACATTGG 60.093 50.000 18.17 0.00 46.73 3.16
2325 4032 3.204526 GAGAGAAGGGCATCTCACATTG 58.795 50.000 18.17 0.00 46.73 2.82
2326 4033 2.172293 GGAGAGAAGGGCATCTCACATT 59.828 50.000 18.17 1.70 46.73 2.71
2660 5463 2.159382 CAATGTCACCACCCAACTACC 58.841 52.381 0.00 0.00 0.00 3.18
2844 5652 5.484644 TCCAACCATTTCACCAATCAATGAT 59.515 36.000 0.00 0.00 30.66 2.45
3030 5892 5.006386 AGGTTTCAGAAGCATAAAGGACTG 58.994 41.667 0.00 0.00 35.74 3.51
3071 5934 5.127845 CAGAGCTCTGAGGTACAATTAGGAA 59.872 44.000 35.69 0.00 46.59 3.36
3188 6051 5.344743 TGGAACATTTGTTTGCAAGGTAA 57.655 34.783 0.00 0.00 38.56 2.85
3221 6084 7.168219 TCAACTAACCTGAATAGCAGTCAATT 58.832 34.615 0.00 0.00 43.33 2.32
3362 6227 3.709141 AGAAATCTAGCCTCTCCTCAACC 59.291 47.826 0.00 0.00 0.00 3.77
3481 6349 3.055385 CCGGGAGACTAATGAAAGAACCA 60.055 47.826 0.00 0.00 0.00 3.67
3482 6350 3.055312 ACCGGGAGACTAATGAAAGAACC 60.055 47.826 6.32 0.00 0.00 3.62
3808 6758 2.674754 GATTTCCCCTCGGTGCCA 59.325 61.111 0.00 0.00 0.00 4.92
4088 7042 2.203523 TGCCAGTGCCAGCAATGT 60.204 55.556 17.66 0.00 39.98 2.71
4175 7144 5.720202 TCACTAATACTATGGCGCCAATAG 58.280 41.667 36.33 31.57 0.00 1.73
4183 7152 5.775701 TCCTTCCTCTCACTAATACTATGGC 59.224 44.000 0.00 0.00 0.00 4.40
4184 7153 9.184523 CTATCCTTCCTCTCACTAATACTATGG 57.815 40.741 0.00 0.00 0.00 2.74
4212 7202 6.258947 ACTCTTCCTCTTCTTTTTCTTTCACG 59.741 38.462 0.00 0.00 0.00 4.35
4229 7219 9.838339 CACATCAGGTAAATTATAACTCTTCCT 57.162 33.333 0.00 0.00 0.00 3.36
4230 7220 9.832445 TCACATCAGGTAAATTATAACTCTTCC 57.168 33.333 0.00 0.00 0.00 3.46
4240 7230 8.421784 GGACTGTATCTCACATCAGGTAAATTA 58.578 37.037 0.00 0.00 36.29 1.40
4257 7253 0.304098 CGGTCGTCGAGGACTGTATC 59.696 60.000 30.06 16.76 42.43 2.24
4261 7257 1.154263 GAACGGTCGTCGAGGACTG 60.154 63.158 34.19 34.19 46.48 3.51
4279 7283 3.315191 ACTCTCAAAATTCAACCACGTGG 59.685 43.478 32.83 32.83 42.17 4.94
4357 7362 1.696063 CCTGGTTATTGGGGAGCATG 58.304 55.000 0.00 0.00 0.00 4.06
4445 7450 7.601856 ACGATTCTTTGATTTTTATGCCAAGA 58.398 30.769 0.00 0.00 0.00 3.02
4446 7451 7.541783 TGACGATTCTTTGATTTTTATGCCAAG 59.458 33.333 0.00 0.00 0.00 3.61
4447 7452 7.374272 TGACGATTCTTTGATTTTTATGCCAA 58.626 30.769 0.00 0.00 0.00 4.52
4449 7454 6.020360 GCTGACGATTCTTTGATTTTTATGCC 60.020 38.462 0.00 0.00 0.00 4.40
4451 7456 8.451687 TTGCTGACGATTCTTTGATTTTTATG 57.548 30.769 0.00 0.00 0.00 1.90
4453 7458 8.349245 TCTTTGCTGACGATTCTTTGATTTTTA 58.651 29.630 0.00 0.00 0.00 1.52
4454 7459 7.202526 TCTTTGCTGACGATTCTTTGATTTTT 58.797 30.769 0.00 0.00 0.00 1.94
4456 7461 6.317789 TCTTTGCTGACGATTCTTTGATTT 57.682 33.333 0.00 0.00 0.00 2.17
4457 7462 5.106396 CCTCTTTGCTGACGATTCTTTGATT 60.106 40.000 0.00 0.00 0.00 2.57
4458 7463 4.394300 CCTCTTTGCTGACGATTCTTTGAT 59.606 41.667 0.00 0.00 0.00 2.57
4459 7464 3.748048 CCTCTTTGCTGACGATTCTTTGA 59.252 43.478 0.00 0.00 0.00 2.69
4460 7465 3.748048 TCCTCTTTGCTGACGATTCTTTG 59.252 43.478 0.00 0.00 0.00 2.77
4461 7466 3.999663 CTCCTCTTTGCTGACGATTCTTT 59.000 43.478 0.00 0.00 0.00 2.52
4462 7467 3.259374 TCTCCTCTTTGCTGACGATTCTT 59.741 43.478 0.00 0.00 0.00 2.52
4465 7470 2.300152 TGTCTCCTCTTTGCTGACGATT 59.700 45.455 0.00 0.00 0.00 3.34
4470 7475 3.558931 TTTGTGTCTCCTCTTTGCTGA 57.441 42.857 0.00 0.00 0.00 4.26
4471 7476 3.243201 GGTTTTGTGTCTCCTCTTTGCTG 60.243 47.826 0.00 0.00 0.00 4.41
4472 7477 2.952310 GGTTTTGTGTCTCCTCTTTGCT 59.048 45.455 0.00 0.00 0.00 3.91
4475 7480 3.553828 TCGGTTTTGTGTCTCCTCTTT 57.446 42.857 0.00 0.00 0.00 2.52
4476 7481 3.071023 TCATCGGTTTTGTGTCTCCTCTT 59.929 43.478 0.00 0.00 0.00 2.85
4477 7482 2.632996 TCATCGGTTTTGTGTCTCCTCT 59.367 45.455 0.00 0.00 0.00 3.69
4478 7483 2.996621 CTCATCGGTTTTGTGTCTCCTC 59.003 50.000 0.00 0.00 0.00 3.71
4479 7484 2.289694 CCTCATCGGTTTTGTGTCTCCT 60.290 50.000 0.00 0.00 0.00 3.69
4480 7485 2.076863 CCTCATCGGTTTTGTGTCTCC 58.923 52.381 0.00 0.00 0.00 3.71
4483 7488 1.523758 AGCCTCATCGGTTTTGTGTC 58.476 50.000 0.00 0.00 34.25 3.67
4484 7489 1.981256 AAGCCTCATCGGTTTTGTGT 58.019 45.000 0.00 0.00 31.37 3.72
4490 7495 3.420893 TGATTTCAAAGCCTCATCGGTT 58.579 40.909 0.00 0.00 34.25 4.44
4491 7496 3.012518 CTGATTTCAAAGCCTCATCGGT 58.987 45.455 0.00 0.00 34.25 4.69
4492 7497 3.012518 ACTGATTTCAAAGCCTCATCGG 58.987 45.455 0.00 0.00 0.00 4.18
4494 7499 4.268359 AGGACTGATTTCAAAGCCTCATC 58.732 43.478 0.00 0.00 0.00 2.92
4495 7500 4.313020 AGGACTGATTTCAAAGCCTCAT 57.687 40.909 0.00 0.00 0.00 2.90
4496 7501 3.795688 AGGACTGATTTCAAAGCCTCA 57.204 42.857 0.00 0.00 0.00 3.86
4522 7575 3.402110 CATAAGATGGCGGCACAATAGA 58.598 45.455 16.34 0.00 0.00 1.98
4523 7576 2.485426 CCATAAGATGGCGGCACAATAG 59.515 50.000 16.34 2.78 44.70 1.73
4658 7817 6.151144 CCTCCAACGGATAACAATTTTTCTCT 59.849 38.462 0.00 0.00 0.00 3.10
4659 7818 6.322491 CCTCCAACGGATAACAATTTTTCTC 58.678 40.000 0.00 0.00 0.00 2.87
4780 8015 5.313520 TCACATCAAAATTGCGACATCAT 57.686 34.783 0.00 0.00 0.00 2.45
4818 8053 2.037144 GCCATCCAATGCATCCTCTTT 58.963 47.619 0.00 0.00 0.00 2.52
4867 8102 2.616524 CCGGAATCCCATACCTCCTTA 58.383 52.381 0.00 0.00 0.00 2.69
4875 8110 5.252863 ACAATGAATATCCCGGAATCCCATA 59.747 40.000 0.73 0.00 0.00 2.74
4918 8519 2.545952 CCGGATTATCAAGGAGACACCG 60.546 54.545 0.00 0.00 44.74 4.94
4985 8588 4.445452 AAGCTTGCATTCATCAAATCGT 57.555 36.364 0.00 0.00 0.00 3.73
5031 8634 2.091166 TCCAGCCATAATGCTTTCCCAT 60.091 45.455 0.00 0.00 40.32 4.00
5035 8638 5.358160 AGTTAACTCCAGCCATAATGCTTTC 59.642 40.000 1.12 0.00 40.32 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.