Multiple sequence alignment - TraesCS2D01G128500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G128500 chr2D 100.000 5844 0 0 1 5844 74954027 74948184 0.000000e+00 10792.0
1 TraesCS2D01G128500 chr2D 93.716 923 23 12 1 917 634823673 634824566 0.000000e+00 1351.0
2 TraesCS2D01G128500 chr2D 88.203 551 58 6 3161 3706 74967583 74967035 0.000000e+00 651.0
3 TraesCS2D01G128500 chr2D 84.992 653 69 15 986 1622 74969045 74968406 2.300000e-178 636.0
4 TraesCS2D01G128500 chr2D 94.083 169 10 0 2809 2977 56541156 56540988 2.090000e-64 257.0
5 TraesCS2D01G128500 chr2D 95.092 163 8 0 2808 2970 445733833 445733671 2.090000e-64 257.0
6 TraesCS2D01G128500 chr2D 100.000 29 0 0 5577 5605 404094847 404094819 3.000000e-03 54.7
7 TraesCS2D01G128500 chr2B 94.528 1919 70 14 2969 4860 114053756 114051846 0.000000e+00 2929.0
8 TraesCS2D01G128500 chr2B 92.331 1630 64 17 917 2506 114056889 114055281 0.000000e+00 2261.0
9 TraesCS2D01G128500 chr2B 85.692 650 67 18 986 1622 114063349 114062713 0.000000e+00 662.0
10 TraesCS2D01G128500 chr2B 87.296 551 64 5 3161 3706 114061891 114061342 4.970000e-175 625.0
11 TraesCS2D01G128500 chr2B 88.269 520 55 5 5299 5816 114051322 114050807 8.320000e-173 617.0
12 TraesCS2D01G128500 chr2B 92.835 321 23 0 3925 4245 114050209 114049889 3.190000e-127 466.0
13 TraesCS2D01G128500 chr2B 94.737 285 11 3 2529 2811 114054036 114053754 1.930000e-119 440.0
14 TraesCS2D01G128500 chr2B 92.537 67 3 2 4915 4979 114051841 114051775 1.730000e-15 95.3
15 TraesCS2D01G128500 chr2B 92.308 52 3 1 4300 4351 114049893 114049843 8.120000e-09 73.1
16 TraesCS2D01G128500 chr2A 93.890 1915 78 14 2973 4866 74118095 74116199 0.000000e+00 2852.0
17 TraesCS2D01G128500 chr2A 90.807 1066 53 20 1776 2805 74119179 74118123 0.000000e+00 1384.0
18 TraesCS2D01G128500 chr2A 95.076 853 34 7 1 852 84022356 84021511 0.000000e+00 1336.0
19 TraesCS2D01G128500 chr2A 93.167 922 41 9 1 916 688775481 688774576 0.000000e+00 1334.0
20 TraesCS2D01G128500 chr2A 92.834 907 27 16 917 1796 74120088 74119193 0.000000e+00 1280.0
21 TraesCS2D01G128500 chr2A 85.740 554 70 8 3161 3706 74137571 74137019 1.410000e-160 577.0
22 TraesCS2D01G128500 chr2A 85.383 561 60 11 1075 1622 74138982 74138431 3.950000e-156 562.0
23 TraesCS2D01G128500 chr2A 91.709 398 31 2 3954 4351 74109273 74108878 8.560000e-153 551.0
24 TraesCS2D01G128500 chr2A 84.783 414 41 10 986 1387 74139883 74139480 4.240000e-106 396.0
25 TraesCS2D01G128500 chr2A 85.385 260 19 7 4982 5228 74110265 74110012 9.720000e-63 252.0
26 TraesCS2D01G128500 chr2A 95.041 121 3 3 4861 4979 74115655 74115536 2.780000e-43 187.0
27 TraesCS2D01G128500 chr2A 96.491 57 2 0 5235 5291 588455953 588456009 1.730000e-15 95.3
28 TraesCS2D01G128500 chr1D 91.779 1338 95 7 3060 4391 459051228 459049900 0.000000e+00 1847.0
29 TraesCS2D01G128500 chr1D 93.420 927 30 15 1 918 475527394 475528298 0.000000e+00 1345.0
30 TraesCS2D01G128500 chr1D 91.821 917 52 13 1 916 110903357 110904251 0.000000e+00 1256.0
31 TraesCS2D01G128500 chr1D 83.369 926 90 34 976 1866 459053474 459052578 0.000000e+00 798.0
32 TraesCS2D01G128500 chr1D 89.362 47 3 2 5390 5435 437686814 437686769 2.270000e-04 58.4
33 TraesCS2D01G128500 chr1B 91.121 1374 100 14 3013 4369 631230470 631229102 0.000000e+00 1842.0
34 TraesCS2D01G128500 chr1B 86.323 892 85 16 1 889 583204715 583205572 0.000000e+00 937.0
35 TraesCS2D01G128500 chr1B 82.286 875 78 35 954 1793 631232383 631231551 0.000000e+00 686.0
36 TraesCS2D01G128500 chr1B 82.153 353 31 12 2060 2381 631231154 631230803 2.070000e-69 274.0
37 TraesCS2D01G128500 chr1A 89.951 1443 107 20 2969 4391 551485960 551484536 0.000000e+00 1827.0
38 TraesCS2D01G128500 chr1A 83.367 998 99 38 954 1922 551487667 551486708 0.000000e+00 861.0
39 TraesCS2D01G128500 chr3B 94.264 924 31 9 1 918 766033451 766032544 0.000000e+00 1393.0
40 TraesCS2D01G128500 chr3B 95.062 162 8 0 2809 2970 540174929 540175090 7.520000e-64 255.0
41 TraesCS2D01G128500 chr3B 72.763 257 44 21 5521 5759 760164821 760165069 4.890000e-06 63.9
42 TraesCS2D01G128500 chr3D 93.642 928 19 10 1 916 359623398 359622499 0.000000e+00 1351.0
43 TraesCS2D01G128500 chr3D 92.557 927 36 17 1 917 85227036 85226133 0.000000e+00 1299.0
44 TraesCS2D01G128500 chr3D 94.512 164 9 0 2809 2972 238999414 238999577 2.700000e-63 254.0
45 TraesCS2D01G128500 chr3D 93.491 169 10 1 2805 2973 588397664 588397831 3.500000e-62 250.0
46 TraesCS2D01G128500 chr4A 93.391 923 38 10 1 916 640936651 640937557 0.000000e+00 1345.0
47 TraesCS2D01G128500 chr4A 93.976 166 10 0 2809 2974 742467277 742467442 9.720000e-63 252.0
48 TraesCS2D01G128500 chr4D 92.757 925 32 15 1 916 428530757 428529859 0.000000e+00 1304.0
49 TraesCS2D01G128500 chr4D 92.117 926 41 16 1 916 507113591 507114494 0.000000e+00 1277.0
50 TraesCS2D01G128500 chr6A 92.257 917 42 18 1 917 608440127 608441014 0.000000e+00 1273.0
51 TraesCS2D01G128500 chr6A 91.930 917 45 18 1 917 608466413 608467300 0.000000e+00 1256.0
52 TraesCS2D01G128500 chr4B 95.706 163 7 0 2808 2970 483266541 483266379 4.490000e-66 263.0
53 TraesCS2D01G128500 chr4B 94.512 164 9 0 2809 2972 63753841 63754004 2.700000e-63 254.0
54 TraesCS2D01G128500 chr4B 89.947 189 13 5 2809 2993 20604077 20603891 7.570000e-59 239.0
55 TraesCS2D01G128500 chr3A 98.462 65 1 0 5235 5299 191856655 191856719 1.330000e-21 115.0
56 TraesCS2D01G128500 chr5D 82.353 136 11 7 4507 4631 548201581 548201448 8.010000e-19 106.0
57 TraesCS2D01G128500 chr5D 82.500 120 19 2 2498 2616 539517495 539517613 2.880000e-18 104.0
58 TraesCS2D01G128500 chr5D 93.651 63 4 0 5237 5299 197838791 197838729 1.730000e-15 95.3
59 TraesCS2D01G128500 chr5D 100.000 29 0 0 5526 5554 345447361 345447333 3.000000e-03 54.7
60 TraesCS2D01G128500 chr7B 93.056 72 3 1 4525 4594 735523540 735523611 2.880000e-18 104.0
61 TraesCS2D01G128500 chr5B 85.526 76 8 3 2498 2571 517421251 517421177 6.280000e-10 76.8
62 TraesCS2D01G128500 chr7A 72.772 202 52 3 5577 5778 727894708 727894510 1.360000e-06 65.8
63 TraesCS2D01G128500 chr7A 97.059 34 1 0 5521 5554 635586203 635586236 2.270000e-04 58.4
64 TraesCS2D01G128500 chr7D 88.636 44 4 1 5391 5433 615607158 615607201 1.100000e-02 52.8
65 TraesCS2D01G128500 chr6D 100.000 28 0 0 5405 5432 381363740 381363713 1.100000e-02 52.8
66 TraesCS2D01G128500 chr6D 100.000 28 0 0 5405 5432 393644263 393644290 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G128500 chr2D 74948184 74954027 5843 True 10792.000000 10792 100.000000 1 5844 1 chr2D.!!$R2 5843
1 TraesCS2D01G128500 chr2D 634823673 634824566 893 False 1351.000000 1351 93.716000 1 917 1 chr2D.!!$F1 916
2 TraesCS2D01G128500 chr2D 74967035 74969045 2010 True 643.500000 651 86.597500 986 3706 2 chr2D.!!$R5 2720
3 TraesCS2D01G128500 chr2B 114049843 114056889 7046 True 983.057143 2929 92.506429 917 5816 7 chr2B.!!$R1 4899
4 TraesCS2D01G128500 chr2B 114061342 114063349 2007 True 643.500000 662 86.494000 986 3706 2 chr2B.!!$R2 2720
5 TraesCS2D01G128500 chr2A 74115536 74120088 4552 True 1425.750000 2852 93.143000 917 4979 4 chr2A.!!$R4 4062
6 TraesCS2D01G128500 chr2A 84021511 84022356 845 True 1336.000000 1336 95.076000 1 852 1 chr2A.!!$R1 851
7 TraesCS2D01G128500 chr2A 688774576 688775481 905 True 1334.000000 1334 93.167000 1 916 1 chr2A.!!$R2 915
8 TraesCS2D01G128500 chr2A 74137019 74139883 2864 True 511.666667 577 85.302000 986 3706 3 chr2A.!!$R5 2720
9 TraesCS2D01G128500 chr2A 74108878 74110265 1387 True 401.500000 551 88.547000 3954 5228 2 chr2A.!!$R3 1274
10 TraesCS2D01G128500 chr1D 475527394 475528298 904 False 1345.000000 1345 93.420000 1 918 1 chr1D.!!$F2 917
11 TraesCS2D01G128500 chr1D 459049900 459053474 3574 True 1322.500000 1847 87.574000 976 4391 2 chr1D.!!$R2 3415
12 TraesCS2D01G128500 chr1D 110903357 110904251 894 False 1256.000000 1256 91.821000 1 916 1 chr1D.!!$F1 915
13 TraesCS2D01G128500 chr1B 583204715 583205572 857 False 937.000000 937 86.323000 1 889 1 chr1B.!!$F1 888
14 TraesCS2D01G128500 chr1B 631229102 631232383 3281 True 934.000000 1842 85.186667 954 4369 3 chr1B.!!$R1 3415
15 TraesCS2D01G128500 chr1A 551484536 551487667 3131 True 1344.000000 1827 86.659000 954 4391 2 chr1A.!!$R1 3437
16 TraesCS2D01G128500 chr3B 766032544 766033451 907 True 1393.000000 1393 94.264000 1 918 1 chr3B.!!$R1 917
17 TraesCS2D01G128500 chr3D 359622499 359623398 899 True 1351.000000 1351 93.642000 1 916 1 chr3D.!!$R2 915
18 TraesCS2D01G128500 chr3D 85226133 85227036 903 True 1299.000000 1299 92.557000 1 917 1 chr3D.!!$R1 916
19 TraesCS2D01G128500 chr4A 640936651 640937557 906 False 1345.000000 1345 93.391000 1 916 1 chr4A.!!$F1 915
20 TraesCS2D01G128500 chr4D 428529859 428530757 898 True 1304.000000 1304 92.757000 1 916 1 chr4D.!!$R1 915
21 TraesCS2D01G128500 chr4D 507113591 507114494 903 False 1277.000000 1277 92.117000 1 916 1 chr4D.!!$F1 915
22 TraesCS2D01G128500 chr6A 608440127 608441014 887 False 1273.000000 1273 92.257000 1 917 1 chr6A.!!$F1 916
23 TraesCS2D01G128500 chr6A 608466413 608467300 887 False 1256.000000 1256 91.930000 1 917 1 chr6A.!!$F2 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 979 0.468648 ACTCTAAGTAATGCCCCGGC 59.531 55.000 0.00 0.00 42.35 6.13 F
1459 2371 0.182775 AGAAGGGCAAGTTCACCGTT 59.817 50.000 0.17 0.17 36.77 4.44 F
2790 5449 0.320247 GTCAGGTCACTGTCAGGCTG 60.320 60.000 8.58 8.58 45.14 4.85 F
2822 5499 0.460722 GCTCTTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62 F
2823 5500 1.960953 GCTCTTACTCCCTCCGTTCCT 60.961 57.143 0.00 0.00 0.00 3.36 F
4245 7300 1.942657 CCTGCAATTGAGGGTATGACG 59.057 52.381 10.34 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2785 5444 0.533755 GCTTGTGTCACTGTCAGCCT 60.534 55.000 4.27 0.00 0.00 4.58 R
2954 5646 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36 R
4225 7274 1.942657 CGTCATACCCTCAATTGCAGG 59.057 52.381 13.87 13.87 0.00 4.85 R
4245 7300 2.099405 CCCTCCTCTGAGACTCTGTTC 58.901 57.143 6.17 0.00 41.42 3.18 R
4372 7435 2.290514 CCAACCATTCTCCTTCTGAGCA 60.291 50.000 0.00 0.00 41.18 4.26 R
5267 9089 0.036577 CTGGCATCATCGGAGGGATC 60.037 60.000 0.00 0.00 31.28 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 262 6.872585 TTAATTCCCAAATCCAGCAAGAAT 57.127 33.333 0.00 0.00 0.00 2.40
367 389 3.476552 CCTAGCTCACCAAGTTGAACAA 58.523 45.455 3.87 0.00 0.00 2.83
505 527 0.685131 CATTCCAGGAAGGCATGGCA 60.685 55.000 22.64 0.00 45.39 4.92
618 659 1.176527 GAGCAGAGTGAGAGCAGAGT 58.823 55.000 0.00 0.00 0.00 3.24
619 660 0.889994 AGCAGAGTGAGAGCAGAGTG 59.110 55.000 0.00 0.00 0.00 3.51
644 691 3.197983 AGGGAGGGAAACGACTTAATGAG 59.802 47.826 0.00 0.00 0.00 2.90
881 929 2.757894 TTTTTGGAACCCTAGCACCA 57.242 45.000 0.00 0.00 0.00 4.17
882 930 2.757894 TTTTGGAACCCTAGCACCAA 57.242 45.000 0.00 0.00 40.05 3.67
883 931 2.757894 TTTGGAACCCTAGCACCAAA 57.242 45.000 0.00 0.00 45.87 3.28
884 932 2.757894 TTGGAACCCTAGCACCAAAA 57.242 45.000 0.00 0.00 39.07 2.44
885 933 2.286365 TGGAACCCTAGCACCAAAAG 57.714 50.000 0.00 0.00 0.00 2.27
931 979 0.468648 ACTCTAAGTAATGCCCCGGC 59.531 55.000 0.00 0.00 42.35 6.13
1459 2371 0.182775 AGAAGGGCAAGTTCACCGTT 59.817 50.000 0.17 0.17 36.77 4.44
1522 2434 1.815421 CGGAATCCCTTGCCAGTCG 60.815 63.158 0.00 0.00 0.00 4.18
1639 2565 6.627395 AGTTTCGATGTTTTACATTGTCCA 57.373 33.333 0.00 0.00 39.27 4.02
1640 2566 7.214467 AGTTTCGATGTTTTACATTGTCCAT 57.786 32.000 0.00 0.00 39.27 3.41
1641 2567 8.330466 AGTTTCGATGTTTTACATTGTCCATA 57.670 30.769 0.00 0.00 39.27 2.74
1642 2568 8.234546 AGTTTCGATGTTTTACATTGTCCATAC 58.765 33.333 0.00 0.00 39.27 2.39
1643 2569 7.674471 TTCGATGTTTTACATTGTCCATACA 57.326 32.000 0.00 0.00 39.27 2.29
1654 2590 3.880047 TGTCCATACAACCCGTAGAAG 57.120 47.619 0.00 0.00 32.28 2.85
1782 2832 2.787473 TTAATGCTCTGGTCTGGTGG 57.213 50.000 0.00 0.00 0.00 4.61
1783 2833 1.656587 TAATGCTCTGGTCTGGTGGT 58.343 50.000 0.00 0.00 0.00 4.16
1839 2978 7.162082 CAGAGAGTTGGACAATTACTACCTTT 58.838 38.462 0.00 0.00 0.00 3.11
1866 3182 5.056480 TGGTTGACACATCACTTTCACTAG 58.944 41.667 0.00 0.00 33.38 2.57
1867 3183 5.057149 GGTTGACACATCACTTTCACTAGT 58.943 41.667 0.00 0.00 33.38 2.57
1868 3184 5.527582 GGTTGACACATCACTTTCACTAGTT 59.472 40.000 0.00 0.00 33.38 2.24
1880 3196 9.656040 TCACTTTCACTAGTTGTTAAGTTTACA 57.344 29.630 0.00 0.00 32.45 2.41
1910 3226 3.299503 ACAGTGAATTGCCTGGAAGTTT 58.700 40.909 0.00 0.00 32.90 2.66
2020 3350 4.365899 AACTCTGTTCCGTTGGTTTTTC 57.634 40.909 0.00 0.00 0.00 2.29
2088 3463 6.483640 GGATAACATGGTGACTCAAACTATCC 59.516 42.308 0.00 0.00 0.00 2.59
2126 3501 7.287696 ACACTTGATAAGGGTGTCAATTTCTTT 59.712 33.333 0.00 0.00 45.20 2.52
2206 3587 2.935849 GGTTCTTTGTTTTGGCTGTTGG 59.064 45.455 0.00 0.00 0.00 3.77
2283 3686 6.199908 CCTGATAGAGTCGACATTTGTTCATC 59.800 42.308 19.50 10.73 0.00 2.92
2462 3887 3.259064 CCGTTTATAGGTCCTGTGTGTG 58.741 50.000 0.00 0.00 0.00 3.82
2463 3888 2.671396 CGTTTATAGGTCCTGTGTGTGC 59.329 50.000 0.00 0.00 0.00 4.57
2464 3889 3.616560 CGTTTATAGGTCCTGTGTGTGCT 60.617 47.826 0.00 0.00 0.00 4.40
2629 5277 1.810959 ACGCGTGGGCTTAATAAACA 58.189 45.000 12.93 0.00 36.88 2.83
2742 5390 6.824305 AAATTTCCTCAATTCACGTGATCT 57.176 33.333 20.80 7.23 33.60 2.75
2785 5444 1.040646 GTCCAGTCAGGTCACTGTCA 58.959 55.000 0.22 0.00 45.14 3.58
2790 5449 0.320247 GTCAGGTCACTGTCAGGCTG 60.320 60.000 8.58 8.58 45.14 4.85
2808 5485 2.831333 CTGACAGTGACACAAGCTCTT 58.169 47.619 8.59 0.00 0.00 2.85
2809 5486 3.800261 GCTGACAGTGACACAAGCTCTTA 60.800 47.826 8.59 0.00 0.00 2.10
2810 5487 3.717707 TGACAGTGACACAAGCTCTTAC 58.282 45.455 8.59 0.00 0.00 2.34
2811 5488 3.384789 TGACAGTGACACAAGCTCTTACT 59.615 43.478 8.59 0.00 0.00 2.24
2812 5489 3.983741 ACAGTGACACAAGCTCTTACTC 58.016 45.455 8.59 0.00 0.00 2.59
2813 5490 3.243907 ACAGTGACACAAGCTCTTACTCC 60.244 47.826 8.59 0.00 0.00 3.85
2814 5491 2.300437 AGTGACACAAGCTCTTACTCCC 59.700 50.000 8.59 0.00 0.00 4.30
2815 5492 2.300437 GTGACACAAGCTCTTACTCCCT 59.700 50.000 0.00 0.00 0.00 4.20
2816 5493 2.563179 TGACACAAGCTCTTACTCCCTC 59.437 50.000 0.00 0.00 0.00 4.30
2817 5494 1.903183 ACACAAGCTCTTACTCCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
2818 5495 1.134965 CACAAGCTCTTACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
2819 5496 1.187087 CAAGCTCTTACTCCCTCCGT 58.813 55.000 0.00 0.00 0.00 4.69
2820 5497 1.550976 CAAGCTCTTACTCCCTCCGTT 59.449 52.381 0.00 0.00 0.00 4.44
2821 5498 1.476477 AGCTCTTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
2822 5499 0.460722 GCTCTTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
2823 5500 1.960953 GCTCTTACTCCCTCCGTTCCT 60.961 57.143 0.00 0.00 0.00 3.36
2824 5501 2.686118 GCTCTTACTCCCTCCGTTCCTA 60.686 54.545 0.00 0.00 0.00 2.94
2825 5502 3.629087 CTCTTACTCCCTCCGTTCCTAA 58.371 50.000 0.00 0.00 0.00 2.69
2826 5503 4.021916 CTCTTACTCCCTCCGTTCCTAAA 58.978 47.826 0.00 0.00 0.00 1.85
2827 5504 4.617593 TCTTACTCCCTCCGTTCCTAAAT 58.382 43.478 0.00 0.00 0.00 1.40
2828 5505 5.769835 TCTTACTCCCTCCGTTCCTAAATA 58.230 41.667 0.00 0.00 0.00 1.40
2829 5506 6.379579 TCTTACTCCCTCCGTTCCTAAATAT 58.620 40.000 0.00 0.00 0.00 1.28
2830 5507 7.529555 TCTTACTCCCTCCGTTCCTAAATATA 58.470 38.462 0.00 0.00 0.00 0.86
2831 5508 8.006564 TCTTACTCCCTCCGTTCCTAAATATAA 58.993 37.037 0.00 0.00 0.00 0.98
2832 5509 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2833 5510 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2834 5511 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2835 5512 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2836 5513 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2837 5514 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2838 5515 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2839 5516 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2856 5533 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
2857 5534 8.986991 AGTCTTTGTAGAGATTTCACTATGGAT 58.013 33.333 0.00 0.00 0.00 3.41
2858 5535 9.255304 GTCTTTGTAGAGATTTCACTATGGATC 57.745 37.037 0.00 0.00 0.00 3.36
2870 5562 7.718334 TTCACTATGGATCATATACGGATGT 57.282 36.000 0.00 0.00 0.00 3.06
2871 5563 8.817092 TTCACTATGGATCATATACGGATGTA 57.183 34.615 0.00 0.00 34.45 2.29
2872 5564 8.996651 TCACTATGGATCATATACGGATGTAT 57.003 34.615 0.00 0.00 43.62 2.29
2899 5591 9.803507 ATAGATGCATTTTAGAATGGAGATTCA 57.196 29.630 0.00 0.00 45.08 2.57
2900 5592 7.938715 AGATGCATTTTAGAATGGAGATTCAC 58.061 34.615 0.00 0.00 45.08 3.18
2901 5593 7.778853 AGATGCATTTTAGAATGGAGATTCACT 59.221 33.333 0.00 0.00 45.08 3.41
2902 5594 7.325660 TGCATTTTAGAATGGAGATTCACTC 57.674 36.000 7.98 0.00 42.35 3.51
2903 5595 6.885918 TGCATTTTAGAATGGAGATTCACTCA 59.114 34.615 7.98 0.00 46.54 3.41
2904 5596 7.558807 TGCATTTTAGAATGGAGATTCACTCAT 59.441 33.333 7.98 0.00 46.54 2.90
2905 5597 8.411683 GCATTTTAGAATGGAGATTCACTCATT 58.588 33.333 7.98 0.00 46.54 2.57
2909 5601 8.868522 TTAGAATGGAGATTCACTCATTTTGT 57.131 30.769 0.00 0.00 46.54 2.83
2910 5602 7.771927 AGAATGGAGATTCACTCATTTTGTT 57.228 32.000 0.00 0.00 46.54 2.83
2911 5603 7.824672 AGAATGGAGATTCACTCATTTTGTTC 58.175 34.615 0.00 0.00 46.54 3.18
2912 5604 5.964958 TGGAGATTCACTCATTTTGTTCC 57.035 39.130 0.00 0.00 46.54 3.62
2913 5605 4.455533 TGGAGATTCACTCATTTTGTTCCG 59.544 41.667 0.00 0.00 46.54 4.30
2914 5606 4.455877 GGAGATTCACTCATTTTGTTCCGT 59.544 41.667 0.00 0.00 46.54 4.69
2915 5607 5.642063 GGAGATTCACTCATTTTGTTCCGTA 59.358 40.000 0.00 0.00 46.54 4.02
2916 5608 6.316390 GGAGATTCACTCATTTTGTTCCGTAT 59.684 38.462 0.00 0.00 46.54 3.06
2917 5609 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
2918 5610 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
2919 5611 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
2920 5612 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
2921 5613 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
2922 5614 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
2923 5615 5.873164 ACTCATTTTGTTCCGTATGTAGTCC 59.127 40.000 0.00 0.00 0.00 3.85
2924 5616 5.795972 TCATTTTGTTCCGTATGTAGTCCA 58.204 37.500 0.00 0.00 0.00 4.02
2925 5617 6.411376 TCATTTTGTTCCGTATGTAGTCCAT 58.589 36.000 0.00 0.00 37.58 3.41
2926 5618 7.557724 TCATTTTGTTCCGTATGTAGTCCATA 58.442 34.615 0.00 0.00 34.86 2.74
2927 5619 7.709182 TCATTTTGTTCCGTATGTAGTCCATAG 59.291 37.037 0.00 0.00 36.71 2.23
2928 5620 6.534475 TTTGTTCCGTATGTAGTCCATAGT 57.466 37.500 0.00 0.00 36.71 2.12
2929 5621 5.509716 TGTTCCGTATGTAGTCCATAGTG 57.490 43.478 0.00 0.00 36.71 2.74
2930 5622 4.340097 TGTTCCGTATGTAGTCCATAGTGG 59.660 45.833 0.00 0.00 36.71 4.00
2931 5623 4.442401 TCCGTATGTAGTCCATAGTGGA 57.558 45.455 0.00 0.00 45.98 4.02
2944 5636 6.867519 TCCATAGTGGAATGTCTACAAAGA 57.132 37.500 0.00 0.00 45.00 2.52
2945 5637 6.640518 TCCATAGTGGAATGTCTACAAAGAC 58.359 40.000 0.00 0.00 45.00 3.01
2946 5638 6.440647 TCCATAGTGGAATGTCTACAAAGACT 59.559 38.462 7.04 0.00 46.86 3.24
2947 5639 7.038302 TCCATAGTGGAATGTCTACAAAGACTT 60.038 37.037 7.04 0.00 46.86 3.01
2948 5640 8.258007 CCATAGTGGAATGTCTACAAAGACTTA 58.742 37.037 7.04 0.00 45.65 2.24
2963 5655 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2964 5656 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2965 5657 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2966 5658 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2967 5659 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3133 6157 9.445786 ACTGTAACTAATTTTGAACATTTGTCG 57.554 29.630 0.00 0.00 0.00 4.35
3368 6392 3.825143 AATTGTTGAAGCAGCAAAGGT 57.175 38.095 0.00 0.00 38.01 3.50
3374 6398 4.695455 TGTTGAAGCAGCAAAGGTATCTAC 59.305 41.667 0.00 0.00 0.00 2.59
3417 6444 6.942576 ACAATTGGTATGCTTCTCAGTAGTTT 59.057 34.615 10.83 0.00 0.00 2.66
3606 6638 3.401033 TCTGACGTCATTGATTGGTGT 57.599 42.857 20.40 0.00 0.00 4.16
3609 6641 4.929211 TCTGACGTCATTGATTGGTGTAAG 59.071 41.667 20.40 1.84 0.00 2.34
3679 6711 4.767409 GCAAAATTACCTTCCTCCACTCTT 59.233 41.667 0.00 0.00 0.00 2.85
3751 6784 5.606749 TGGTCTGCTTATGTATATTCCCACT 59.393 40.000 0.00 0.00 0.00 4.00
3844 6885 8.470805 TCAAGTATTCAGACTTTGTCCTCTATC 58.529 37.037 0.00 0.00 37.57 2.08
3891 6932 5.665459 TCCTAATTTTACTGCAGAGCTCTC 58.335 41.667 23.35 9.65 0.00 3.20
3990 7031 5.355670 AGGGAAGAATGGCTAGATACCTA 57.644 43.478 0.00 0.00 0.00 3.08
4114 7163 6.553100 TGTTTTCCTCACTGGGTTATGAATTT 59.447 34.615 0.00 0.00 36.20 1.82
4225 7274 5.402398 GCAAGAACCTTGATGTAATGAACC 58.598 41.667 10.55 0.00 0.00 3.62
4245 7300 1.942657 CCTGCAATTGAGGGTATGACG 59.057 52.381 10.34 0.00 0.00 4.35
4250 7305 3.063997 GCAATTGAGGGTATGACGAACAG 59.936 47.826 10.34 0.00 0.00 3.16
4311 7373 7.876068 ACATCGGTTTCTCAATCACTTAACTTA 59.124 33.333 0.00 0.00 0.00 2.24
4313 7375 7.439381 TCGGTTTCTCAATCACTTAACTTACT 58.561 34.615 0.00 0.00 0.00 2.24
4370 7433 4.927425 CCCTGAACAATTCTTTTGCAGATG 59.073 41.667 0.00 0.00 0.00 2.90
4372 7435 6.395629 CCTGAACAATTCTTTTGCAGATGAT 58.604 36.000 0.00 0.00 0.00 2.45
4387 7450 4.963373 CAGATGATGCTCAGAAGGAGAAT 58.037 43.478 0.00 0.00 45.18 2.40
4391 7454 3.265221 TGATGCTCAGAAGGAGAATGGTT 59.735 43.478 0.00 0.00 42.35 3.67
4412 7475 5.773176 GGTTGGAAAAAGGAGTCTAATTCCA 59.227 40.000 12.87 12.87 41.79 3.53
4530 7593 2.949909 TAGAATGCCACGCACGGGT 61.950 57.895 0.00 0.00 43.04 5.28
4601 7664 8.743085 ATTTCACATGTATAGAAAGACAGCAT 57.257 30.769 13.35 0.00 35.05 3.79
4622 7685 3.218453 TGGGCACAATCGGGTAATAATG 58.782 45.455 0.00 0.00 0.00 1.90
4702 7765 9.117183 GAGGAAGTATTATAAAATGGGTTCGTT 57.883 33.333 0.00 0.00 0.00 3.85
4820 7892 3.168193 CTGTGGTTGTTTTGACGTTGTC 58.832 45.455 0.00 0.00 0.00 3.18
4866 7940 0.100503 GCCGCTTGTCACTTGTGTTT 59.899 50.000 0.46 0.00 0.00 2.83
4867 7941 1.826327 CCGCTTGTCACTTGTGTTTG 58.174 50.000 0.46 0.00 0.00 2.93
4868 7942 1.400142 CCGCTTGTCACTTGTGTTTGA 59.600 47.619 0.46 0.00 0.00 2.69
4927 8549 0.107945 GAGCAATCCTCGTTCAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
4980 8787 6.644592 GTGCATACACAAACAACCATGTTAAT 59.355 34.615 0.00 0.00 45.87 1.40
5028 8835 7.218204 GCTAATGAATTTAGAAAATGTTCGCGT 59.782 33.333 5.77 0.00 39.86 6.01
5133 8955 5.203358 TCACAAATATGAAGAAAGTCGCG 57.797 39.130 0.00 0.00 0.00 5.87
5143 8965 5.638783 TGAAGAAAGTCGCGGTTTTAAAAA 58.361 33.333 6.13 0.00 0.00 1.94
5225 9047 8.755696 TGACTGTTTTTAAATTATGGACATGC 57.244 30.769 0.00 0.00 0.00 4.06
5228 9050 7.754924 ACTGTTTTTAAATTATGGACATGCGAG 59.245 33.333 0.00 0.00 0.00 5.03
5230 9052 7.540400 TGTTTTTAAATTATGGACATGCGAGTG 59.460 33.333 0.00 0.00 0.00 3.51
5232 9054 1.597742 ATTATGGACATGCGAGTGGC 58.402 50.000 0.00 0.00 43.96 5.01
5236 9058 4.408821 GACATGCGAGTGGCCCCA 62.409 66.667 0.00 0.00 42.61 4.96
5237 9059 4.415150 ACATGCGAGTGGCCCCAG 62.415 66.667 0.00 0.00 42.61 4.45
5238 9060 4.100084 CATGCGAGTGGCCCCAGA 62.100 66.667 0.00 0.00 42.61 3.86
5239 9061 3.329889 ATGCGAGTGGCCCCAGAA 61.330 61.111 0.00 0.00 42.61 3.02
5240 9062 2.905996 ATGCGAGTGGCCCCAGAAA 61.906 57.895 0.00 0.00 42.61 2.52
5241 9063 2.282180 GCGAGTGGCCCCAGAAAA 60.282 61.111 0.00 0.00 34.80 2.29
5242 9064 1.901464 GCGAGTGGCCCCAGAAAAA 60.901 57.895 0.00 0.00 34.80 1.94
5243 9065 1.250840 GCGAGTGGCCCCAGAAAAAT 61.251 55.000 0.00 0.00 34.80 1.82
5244 9066 1.256812 CGAGTGGCCCCAGAAAAATT 58.743 50.000 0.00 0.00 0.00 1.82
5245 9067 1.067635 CGAGTGGCCCCAGAAAAATTG 60.068 52.381 0.00 0.00 0.00 2.32
5246 9068 1.970640 GAGTGGCCCCAGAAAAATTGT 59.029 47.619 0.00 0.00 0.00 2.71
5247 9069 1.970640 AGTGGCCCCAGAAAAATTGTC 59.029 47.619 0.00 0.00 0.00 3.18
5248 9070 0.965439 TGGCCCCAGAAAAATTGTCG 59.035 50.000 0.00 0.00 0.00 4.35
5249 9071 0.246360 GGCCCCAGAAAAATTGTCGG 59.754 55.000 0.00 0.00 0.00 4.79
5250 9072 0.389817 GCCCCAGAAAAATTGTCGGC 60.390 55.000 0.00 0.00 0.00 5.54
5251 9073 0.246360 CCCCAGAAAAATTGTCGGCC 59.754 55.000 0.00 0.00 0.00 6.13
5252 9074 1.256812 CCCAGAAAAATTGTCGGCCT 58.743 50.000 0.00 0.00 0.00 5.19
5253 9075 2.442413 CCCAGAAAAATTGTCGGCCTA 58.558 47.619 0.00 0.00 0.00 3.93
5254 9076 3.023832 CCCAGAAAAATTGTCGGCCTAT 58.976 45.455 0.00 0.00 0.00 2.57
5255 9077 3.181487 CCCAGAAAAATTGTCGGCCTATG 60.181 47.826 0.00 0.00 0.00 2.23
5256 9078 3.694072 CCAGAAAAATTGTCGGCCTATGA 59.306 43.478 0.00 0.00 0.00 2.15
5257 9079 4.157656 CCAGAAAAATTGTCGGCCTATGAA 59.842 41.667 0.00 0.00 0.00 2.57
5258 9080 5.163519 CCAGAAAAATTGTCGGCCTATGAAT 60.164 40.000 0.00 0.00 0.00 2.57
5259 9081 5.745294 CAGAAAAATTGTCGGCCTATGAATG 59.255 40.000 0.00 0.00 0.00 2.67
5260 9082 5.418840 AGAAAAATTGTCGGCCTATGAATGT 59.581 36.000 0.00 0.00 0.00 2.71
5261 9083 4.637483 AAATTGTCGGCCTATGAATGTG 57.363 40.909 0.00 0.00 0.00 3.21
5262 9084 2.036958 TTGTCGGCCTATGAATGTGG 57.963 50.000 0.00 0.00 0.00 4.17
5263 9085 0.908910 TGTCGGCCTATGAATGTGGT 59.091 50.000 0.00 0.00 0.00 4.16
5264 9086 1.280710 TGTCGGCCTATGAATGTGGTT 59.719 47.619 0.00 0.00 0.00 3.67
5265 9087 1.940613 GTCGGCCTATGAATGTGGTTC 59.059 52.381 0.00 0.00 37.35 3.62
5266 9088 1.134220 TCGGCCTATGAATGTGGTTCC 60.134 52.381 0.00 0.00 35.91 3.62
5267 9089 1.308998 GGCCTATGAATGTGGTTCCG 58.691 55.000 0.00 0.00 35.91 4.30
5268 9090 1.134220 GGCCTATGAATGTGGTTCCGA 60.134 52.381 0.00 0.00 35.91 4.55
5269 9091 2.487265 GGCCTATGAATGTGGTTCCGAT 60.487 50.000 0.00 0.00 35.91 4.18
5270 9092 2.808543 GCCTATGAATGTGGTTCCGATC 59.191 50.000 0.00 0.00 35.91 3.69
5271 9093 3.403038 CCTATGAATGTGGTTCCGATCC 58.597 50.000 0.00 0.00 35.91 3.36
5272 9094 2.348411 ATGAATGTGGTTCCGATCCC 57.652 50.000 0.00 0.00 35.91 3.85
5273 9095 1.285280 TGAATGTGGTTCCGATCCCT 58.715 50.000 0.00 0.00 35.91 4.20
5274 9096 1.209504 TGAATGTGGTTCCGATCCCTC 59.790 52.381 0.00 0.00 35.91 4.30
5275 9097 0.546598 AATGTGGTTCCGATCCCTCC 59.453 55.000 0.00 0.00 0.00 4.30
5276 9098 1.686325 ATGTGGTTCCGATCCCTCCG 61.686 60.000 0.00 0.00 0.00 4.63
5277 9099 2.056223 GTGGTTCCGATCCCTCCGA 61.056 63.158 0.00 0.00 0.00 4.55
5278 9100 1.075525 TGGTTCCGATCCCTCCGAT 60.076 57.895 0.00 0.00 0.00 4.18
5279 9101 1.367840 GGTTCCGATCCCTCCGATG 59.632 63.158 0.00 0.00 0.00 3.84
5280 9102 1.113517 GGTTCCGATCCCTCCGATGA 61.114 60.000 0.00 0.00 0.00 2.92
5281 9103 0.969894 GTTCCGATCCCTCCGATGAT 59.030 55.000 0.00 0.00 0.00 2.45
5282 9104 0.969149 TTCCGATCCCTCCGATGATG 59.031 55.000 0.00 0.00 0.00 3.07
5283 9105 1.079543 CCGATCCCTCCGATGATGC 60.080 63.158 0.00 0.00 0.00 3.91
5284 9106 1.079543 CGATCCCTCCGATGATGCC 60.080 63.158 0.00 0.00 0.00 4.40
5285 9107 1.820010 CGATCCCTCCGATGATGCCA 61.820 60.000 0.00 0.00 0.00 4.92
5286 9108 0.036577 GATCCCTCCGATGATGCCAG 60.037 60.000 0.00 0.00 0.00 4.85
5287 9109 0.472543 ATCCCTCCGATGATGCCAGA 60.473 55.000 0.00 0.00 0.00 3.86
5288 9110 0.690744 TCCCTCCGATGATGCCAGAA 60.691 55.000 0.00 0.00 0.00 3.02
5289 9111 0.250209 CCCTCCGATGATGCCAGAAG 60.250 60.000 0.00 0.00 0.00 2.85
5290 9112 0.467384 CCTCCGATGATGCCAGAAGT 59.533 55.000 0.00 0.00 0.00 3.01
5291 9113 1.539929 CCTCCGATGATGCCAGAAGTC 60.540 57.143 0.00 0.00 0.00 3.01
5292 9114 0.103026 TCCGATGATGCCAGAAGTCG 59.897 55.000 0.00 0.00 0.00 4.18
5293 9115 0.179100 CCGATGATGCCAGAAGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
5294 9116 1.645034 CGATGATGCCAGAAGTCGTT 58.355 50.000 0.00 0.00 0.00 3.85
5295 9117 2.002586 CGATGATGCCAGAAGTCGTTT 58.997 47.619 0.00 0.00 0.00 3.60
5296 9118 2.029728 CGATGATGCCAGAAGTCGTTTC 59.970 50.000 0.00 0.00 35.97 2.78
5297 9119 1.428448 TGATGCCAGAAGTCGTTTCG 58.572 50.000 0.00 0.00 40.86 3.46
5313 9135 6.477688 AGTCGTTTCGAACAATCTAGTTGAAA 59.522 34.615 0.00 1.57 41.11 2.69
5319 9141 5.699458 TCGAACAATCTAGTTGAAAAGGGAC 59.301 40.000 10.71 0.00 40.37 4.46
5323 9145 7.654022 ACAATCTAGTTGAAAAGGGACAAAA 57.346 32.000 10.71 0.00 40.37 2.44
5355 9177 2.668250 CACAGTTGCATGTTGGATGTG 58.332 47.619 0.00 0.45 0.00 3.21
5356 9178 2.034939 CACAGTTGCATGTTGGATGTGT 59.965 45.455 0.00 0.00 33.60 3.72
5368 9190 7.574779 GCATGTTGGATGTGTACTTACAATTGA 60.575 37.037 13.59 0.00 38.04 2.57
5370 9192 7.220740 TGTTGGATGTGTACTTACAATTGAGA 58.779 34.615 13.59 0.00 38.04 3.27
5371 9193 7.172532 TGTTGGATGTGTACTTACAATTGAGAC 59.827 37.037 13.59 0.00 38.04 3.36
5376 9198 9.599322 GATGTGTACTTACAATTGAGACAAAAG 57.401 33.333 13.59 7.88 38.04 2.27
5378 9200 7.771361 TGTGTACTTACAATTGAGACAAAAGGA 59.229 33.333 13.59 0.01 38.04 3.36
5379 9201 8.283291 GTGTACTTACAATTGAGACAAAAGGAG 58.717 37.037 13.59 0.00 38.04 3.69
5380 9202 6.319141 ACTTACAATTGAGACAAAAGGAGC 57.681 37.500 13.59 0.00 0.00 4.70
5411 9233 1.024271 CGGGTTGCATGTAAGGATGG 58.976 55.000 0.00 0.00 0.00 3.51
5420 9242 3.382546 GCATGTAAGGATGGACTTGCAAT 59.617 43.478 0.00 0.00 44.24 3.56
5456 9278 9.857656 AAGTGAGTTACATATGAAATGATGGAT 57.142 29.630 10.38 0.00 0.00 3.41
5495 9317 1.981256 AAAGACGACCCAGTTGCAAT 58.019 45.000 0.59 0.00 0.00 3.56
5496 9318 1.238439 AAGACGACCCAGTTGCAATG 58.762 50.000 0.59 2.07 0.00 2.82
5497 9319 0.396435 AGACGACCCAGTTGCAATGA 59.604 50.000 0.59 0.00 0.00 2.57
5528 9350 3.953775 CCACCTCGCCCCAGTTGT 61.954 66.667 0.00 0.00 0.00 3.32
5529 9351 2.669569 CACCTCGCCCCAGTTGTG 60.670 66.667 0.00 0.00 0.00 3.33
5565 9387 4.959839 ACTTACAACTGGGGACAAAACAAT 59.040 37.500 0.00 0.00 42.06 2.71
5568 9390 3.517500 ACAACTGGGGACAAAACAATTGT 59.482 39.130 4.92 4.92 42.06 2.71
5571 9393 4.282496 ACTGGGGACAAAACAATTGTGTA 58.718 39.130 12.82 0.00 42.06 2.90
5582 9404 1.065053 CAATTGTGTATCGGGGGTGGA 60.065 52.381 0.00 0.00 0.00 4.02
5591 9413 2.600470 GGGGGTGGACTTGCAACC 60.600 66.667 0.00 0.00 0.00 3.77
5641 9463 4.039124 TGCATGTTGAGAGTAGACTCACAA 59.961 41.667 15.72 15.72 46.23 3.33
5649 9471 4.160329 AGAGTAGACTCACAATTGGGACA 58.840 43.478 6.21 0.00 45.21 4.02
5680 9502 3.443045 GCCCAGTTGCATGTCGGG 61.443 66.667 6.63 6.63 40.11 5.14
5702 9524 3.623060 GTCTGAACTTGCAACTGAGACAA 59.377 43.478 14.70 0.00 0.00 3.18
5709 9531 2.297701 TGCAACTGAGACAAAAGGGAC 58.702 47.619 0.00 0.00 0.00 4.46
5711 9533 2.930950 CAACTGAGACAAAAGGGACCA 58.069 47.619 0.00 0.00 0.00 4.02
5713 9535 2.408565 ACTGAGACAAAAGGGACCAGA 58.591 47.619 0.00 0.00 0.00 3.86
5732 9554 0.671781 AGCCTCAGTTGCATGTCGAC 60.672 55.000 9.11 9.11 0.00 4.20
5767 9589 3.821033 CCTGGGACAAAAAGTAGGTCAAG 59.179 47.826 0.00 0.00 38.70 3.02
5780 9602 0.883833 GGTCAAGGTCCAGTTGCATG 59.116 55.000 0.00 0.00 0.00 4.06
5782 9604 1.537202 GTCAAGGTCCAGTTGCATGTC 59.463 52.381 0.00 0.00 0.00 3.06
5783 9605 1.142667 TCAAGGTCCAGTTGCATGTCA 59.857 47.619 0.00 0.00 0.00 3.58
5786 9609 0.250901 GGTCCAGTTGCATGTCAGGT 60.251 55.000 0.00 0.00 0.00 4.00
5790 9613 1.955778 CCAGTTGCATGTCAGGTTGAA 59.044 47.619 0.00 0.00 0.00 2.69
5811 9634 0.897863 TTGCATCGGGGACAAAAGGG 60.898 55.000 0.00 0.00 0.00 3.95
5816 9639 2.886134 CGGGGACAAAAGGGGTCGA 61.886 63.158 0.00 0.00 36.12 4.20
5818 9641 1.674651 GGGACAAAAGGGGTCGAGC 60.675 63.158 5.93 5.93 36.12 5.03
5819 9642 1.674651 GGACAAAAGGGGTCGAGCC 60.675 63.158 25.56 25.56 36.12 4.70
5828 9800 2.281484 GGTCGAGCCCAAGTTGCA 60.281 61.111 2.39 0.00 0.00 4.08
5831 9803 1.073025 TCGAGCCCAAGTTGCATGT 59.927 52.632 0.00 0.00 0.00 3.21
5837 9809 0.321564 CCCAAGTTGCATGTCGAGGA 60.322 55.000 0.00 0.00 0.00 3.71
5839 9811 2.419990 CCCAAGTTGCATGTCGAGGATA 60.420 50.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 262 4.986054 TGCTTGAAAACTAGGGTTAGGA 57.014 40.909 0.00 0.00 34.90 2.94
618 659 0.114560 AGTCGTTTCCCTCCCTCTCA 59.885 55.000 0.00 0.00 0.00 3.27
619 660 1.268066 AAGTCGTTTCCCTCCCTCTC 58.732 55.000 0.00 0.00 0.00 3.20
811 858 2.233271 ACCTACCACTTTTCTCGTCGA 58.767 47.619 0.00 0.00 0.00 4.20
879 927 9.030301 CATAAAACTACCACTTTTCACTTTTGG 57.970 33.333 0.00 0.00 0.00 3.28
880 928 8.539674 GCATAAAACTACCACTTTTCACTTTTG 58.460 33.333 0.00 0.00 0.00 2.44
881 929 8.474831 AGCATAAAACTACCACTTTTCACTTTT 58.525 29.630 0.00 0.00 0.00 2.27
882 930 8.007405 AGCATAAAACTACCACTTTTCACTTT 57.993 30.769 0.00 0.00 0.00 2.66
883 931 7.582667 AGCATAAAACTACCACTTTTCACTT 57.417 32.000 0.00 0.00 0.00 3.16
884 932 8.863872 ATAGCATAAAACTACCACTTTTCACT 57.136 30.769 0.00 0.00 0.00 3.41
885 933 9.908152 AAATAGCATAAAACTACCACTTTTCAC 57.092 29.630 0.00 0.00 0.00 3.18
1322 2227 0.828022 TCGTCACGGGAGCCATAATT 59.172 50.000 0.00 0.00 0.00 1.40
1522 2434 3.305471 GCAGTTCCTGGATATAGTCGTCC 60.305 52.174 0.00 0.00 35.02 4.79
1594 2506 7.391148 ACTAGACGCAAATACAAAATCCATT 57.609 32.000 0.00 0.00 0.00 3.16
1639 2565 3.039011 AGGCATCTTCTACGGGTTGTAT 58.961 45.455 0.00 0.00 31.20 2.29
1640 2566 2.463752 AGGCATCTTCTACGGGTTGTA 58.536 47.619 0.00 0.00 0.00 2.41
1641 2567 1.276622 AGGCATCTTCTACGGGTTGT 58.723 50.000 0.00 0.00 0.00 3.32
1642 2568 2.009774 CAAGGCATCTTCTACGGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
1643 2569 1.628846 ACAAGGCATCTTCTACGGGTT 59.371 47.619 0.00 0.00 0.00 4.11
1645 2581 3.536956 TTACAAGGCATCTTCTACGGG 57.463 47.619 0.00 0.00 0.00 5.28
1650 2586 4.026356 ACAGCTTTACAAGGCATCTTCT 57.974 40.909 0.00 0.00 0.00 2.85
1654 2590 4.010349 ACCTTACAGCTTTACAAGGCATC 58.990 43.478 10.78 0.00 41.08 3.91
1681 2617 2.091541 ACCACACTGTGTTTTGTCCTG 58.908 47.619 11.40 0.00 0.00 3.86
1769 2819 3.261897 AGTTCAATACCACCAGACCAGAG 59.738 47.826 0.00 0.00 0.00 3.35
1776 2826 6.974622 GCAAAATCATAGTTCAATACCACCAG 59.025 38.462 0.00 0.00 0.00 4.00
1777 2827 6.435591 TGCAAAATCATAGTTCAATACCACCA 59.564 34.615 0.00 0.00 0.00 4.17
1778 2828 6.862209 TGCAAAATCATAGTTCAATACCACC 58.138 36.000 0.00 0.00 0.00 4.61
1779 2829 8.190122 TCATGCAAAATCATAGTTCAATACCAC 58.810 33.333 0.00 0.00 0.00 4.16
1782 2832 9.793252 ACTTCATGCAAAATCATAGTTCAATAC 57.207 29.630 0.00 0.00 0.00 1.89
1783 2833 9.791820 CACTTCATGCAAAATCATAGTTCAATA 57.208 29.630 0.00 0.00 0.00 1.90
1880 3196 6.043590 TCCAGGCAATTCACTGTATGATCTAT 59.956 38.462 0.00 0.00 37.11 1.98
1910 3226 5.528043 AACATGTCAGCAACCAATTTGTA 57.472 34.783 0.00 0.00 37.54 2.41
2020 3350 1.611977 CCAGGTCATATGGCTGCAATG 59.388 52.381 7.36 2.27 0.00 2.82
2088 3463 6.540189 CCCTTATCAAGTGTATCCAACAGAAG 59.460 42.308 0.00 0.00 39.29 2.85
2126 3501 2.832129 GACCAACCTCACTCTCATGGTA 59.168 50.000 0.00 0.00 41.04 3.25
2206 3587 8.688747 ATTTTGAGATAATCCAAGTCTCATCC 57.311 34.615 5.27 0.00 45.41 3.51
2239 3620 2.363680 AGGACTTCTATGTCGCCATCAG 59.636 50.000 0.00 0.00 37.81 2.90
2462 3887 6.569179 TGGTAAAATTGACAACCTAGAAGC 57.431 37.500 0.00 0.00 32.99 3.86
2463 3888 7.542130 GCATTGGTAAAATTGACAACCTAGAAG 59.458 37.037 0.00 0.00 32.99 2.85
2464 3889 7.014711 TGCATTGGTAAAATTGACAACCTAGAA 59.985 33.333 0.00 0.00 32.99 2.10
2582 5229 5.411361 CCTAGATCGACAATTTGACCAACAA 59.589 40.000 2.79 0.00 36.65 2.83
2651 5299 2.306219 AGAGACTTGGGCTTAGGGTTTC 59.694 50.000 0.00 0.00 0.00 2.78
2785 5444 0.533755 GCTTGTGTCACTGTCAGCCT 60.534 55.000 4.27 0.00 0.00 4.58
2790 5449 3.983741 AGTAAGAGCTTGTGTCACTGTC 58.016 45.455 4.27 0.00 0.00 3.51
2808 5485 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2809 5486 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2810 5487 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2811 5488 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2812 5489 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2813 5490 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2814 5491 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2830 5507 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
2831 5508 8.367660 TCCATAGTGAAATCTCTACAAAGACT 57.632 34.615 0.00 0.00 0.00 3.24
2832 5509 9.255304 GATCCATAGTGAAATCTCTACAAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
2833 5510 8.981659 TGATCCATAGTGAAATCTCTACAAAGA 58.018 33.333 0.00 0.00 0.00 2.52
2834 5511 9.775854 ATGATCCATAGTGAAATCTCTACAAAG 57.224 33.333 0.00 0.00 0.00 2.77
2840 5517 8.690884 CCGTATATGATCCATAGTGAAATCTCT 58.309 37.037 0.00 0.00 29.42 3.10
2841 5518 8.687242 TCCGTATATGATCCATAGTGAAATCTC 58.313 37.037 0.00 0.00 29.42 2.75
2842 5519 8.595362 TCCGTATATGATCCATAGTGAAATCT 57.405 34.615 0.00 0.00 29.42 2.40
2843 5520 9.254133 CATCCGTATATGATCCATAGTGAAATC 57.746 37.037 0.00 0.00 29.42 2.17
2844 5521 8.762645 ACATCCGTATATGATCCATAGTGAAAT 58.237 33.333 0.00 0.00 29.42 2.17
2845 5522 8.134202 ACATCCGTATATGATCCATAGTGAAA 57.866 34.615 0.00 0.00 29.42 2.69
2846 5523 7.718334 ACATCCGTATATGATCCATAGTGAA 57.282 36.000 0.00 0.00 29.42 3.18
2847 5524 8.996651 ATACATCCGTATATGATCCATAGTGA 57.003 34.615 0.00 0.00 36.53 3.41
2873 5565 9.803507 TGAATCTCCATTCTAAAATGCATCTAT 57.196 29.630 0.00 0.00 40.85 1.98
2875 5567 7.778853 AGTGAATCTCCATTCTAAAATGCATCT 59.221 33.333 0.00 0.00 40.85 2.90
2877 5569 7.558807 TGAGTGAATCTCCATTCTAAAATGCAT 59.441 33.333 0.00 0.00 40.85 3.96
2878 5570 6.885918 TGAGTGAATCTCCATTCTAAAATGCA 59.114 34.615 0.00 0.00 40.85 3.96
2884 5576 8.868522 ACAAAATGAGTGAATCTCCATTCTAA 57.131 30.769 0.00 0.00 42.12 2.10
2885 5577 8.868522 AACAAAATGAGTGAATCTCCATTCTA 57.131 30.769 0.00 0.00 42.12 2.10
2889 5581 5.124457 CGGAACAAAATGAGTGAATCTCCAT 59.876 40.000 0.00 0.00 42.12 3.41
2890 5582 4.455533 CGGAACAAAATGAGTGAATCTCCA 59.544 41.667 0.00 0.00 42.12 3.86
2891 5583 4.455877 ACGGAACAAAATGAGTGAATCTCC 59.544 41.667 0.00 0.00 42.12 3.71
2892 5584 5.613358 ACGGAACAAAATGAGTGAATCTC 57.387 39.130 0.00 0.00 43.03 2.75
2893 5585 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
2894 5586 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
2895 5587 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
2896 5588 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
2897 5589 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
2898 5590 6.183360 GGACTACATACGGAACAAAATGAGTG 60.183 42.308 0.00 0.00 0.00 3.51
2899 5591 5.873164 GGACTACATACGGAACAAAATGAGT 59.127 40.000 0.00 0.00 0.00 3.41
2900 5592 5.872617 TGGACTACATACGGAACAAAATGAG 59.127 40.000 0.00 0.00 0.00 2.90
2901 5593 5.795972 TGGACTACATACGGAACAAAATGA 58.204 37.500 0.00 0.00 0.00 2.57
2902 5594 6.677781 ATGGACTACATACGGAACAAAATG 57.322 37.500 0.00 0.00 38.26 2.32
2903 5595 7.494625 CACTATGGACTACATACGGAACAAAAT 59.505 37.037 0.00 0.00 41.03 1.82
2904 5596 6.814644 CACTATGGACTACATACGGAACAAAA 59.185 38.462 0.00 0.00 41.03 2.44
2905 5597 6.334989 CACTATGGACTACATACGGAACAAA 58.665 40.000 0.00 0.00 41.03 2.83
2906 5598 5.163488 CCACTATGGACTACATACGGAACAA 60.163 44.000 0.00 0.00 40.96 2.83
2907 5599 4.340097 CCACTATGGACTACATACGGAACA 59.660 45.833 0.00 0.00 40.96 3.18
2908 5600 4.581824 TCCACTATGGACTACATACGGAAC 59.418 45.833 0.00 0.00 42.67 3.62
2909 5601 4.795469 TCCACTATGGACTACATACGGAA 58.205 43.478 0.00 0.00 42.67 4.30
2910 5602 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
2919 5611 7.579723 GTCTTTGTAGACATTCCACTATGGACT 60.580 40.741 0.00 0.00 46.88 3.85
2920 5612 6.535508 GTCTTTGTAGACATTCCACTATGGAC 59.464 42.308 0.00 0.00 46.88 4.02
2921 5613 6.867519 TCTTTGTAGACATTCCACTATGGA 57.132 37.500 0.00 0.00 46.61 3.41
2938 5630 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2939 5631 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2940 5632 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2941 5633 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2942 5634 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2943 5635 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2944 5636 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2945 5637 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2946 5638 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2947 5639 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2948 5640 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2949 5641 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2950 5642 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2951 5643 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2952 5644 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2953 5645 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2954 5646 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2955 5647 5.105432 GGATATATTGTACTCCCTCCGTTCC 60.105 48.000 0.00 0.00 0.00 3.62
2956 5648 5.715753 AGGATATATTGTACTCCCTCCGTTC 59.284 44.000 0.00 0.00 0.00 3.95
2957 5649 5.652324 AGGATATATTGTACTCCCTCCGTT 58.348 41.667 0.00 0.00 0.00 4.44
2958 5650 5.272405 AGGATATATTGTACTCCCTCCGT 57.728 43.478 0.00 0.00 0.00 4.69
2959 5651 6.265649 CCATAGGATATATTGTACTCCCTCCG 59.734 46.154 0.00 0.00 0.00 4.63
2960 5652 7.133483 ACCATAGGATATATTGTACTCCCTCC 58.867 42.308 0.00 0.00 0.00 4.30
2961 5653 9.710818 TTACCATAGGATATATTGTACTCCCTC 57.289 37.037 0.00 0.00 0.00 4.30
3006 5700 6.055588 GCATACATGGTGTAGGATAACTGTT 58.944 40.000 6.01 0.00 36.82 3.16
3107 6131 9.445786 CGACAAATGTTCAAAATTAGTTACAGT 57.554 29.630 0.00 0.00 0.00 3.55
3117 6141 5.108517 ACAACAGCGACAAATGTTCAAAAT 58.891 33.333 0.00 0.00 37.54 1.82
3133 6157 3.143807 TGCAACTAACACAACAACAGC 57.856 42.857 0.00 0.00 0.00 4.40
3368 6392 6.591062 GTGAACATTGTTGTTACCCGTAGATA 59.409 38.462 6.80 0.00 46.01 1.98
3374 6398 3.972950 TGTGAACATTGTTGTTACCCG 57.027 42.857 6.80 0.00 46.01 5.28
3417 6444 4.010667 ACATAAACTAAGCAACCGTGGA 57.989 40.909 0.00 0.00 0.00 4.02
3606 6638 4.783227 AGATTAACTGAGCTCCAACCCTTA 59.217 41.667 12.15 0.00 0.00 2.69
3609 6641 3.198853 AGAGATTAACTGAGCTCCAACCC 59.801 47.826 12.15 0.00 0.00 4.11
3679 6711 4.211125 CCTTCTCAGCACCTAGTATCTGA 58.789 47.826 5.37 5.37 34.74 3.27
3768 6801 6.313905 AGGACAATTACAAATAAGAGAGCACG 59.686 38.462 0.00 0.00 0.00 5.34
3803 6836 8.500753 TGAATACTTGACAAAACAGTTAGTGT 57.499 30.769 2.80 2.80 43.24 3.55
3844 6885 7.330208 GGAAATCAATCACAACATTTCAGAAGG 59.670 37.037 0.00 0.00 37.10 3.46
3996 7037 2.159393 GCGTGAAGCCATTGAGCATTTA 60.159 45.455 0.00 0.00 40.81 1.40
4114 7163 6.450545 CGAAAATGGAGCTACTCATATCTGA 58.549 40.000 0.00 0.00 31.08 3.27
4225 7274 1.942657 CGTCATACCCTCAATTGCAGG 59.057 52.381 13.87 13.87 0.00 4.85
4245 7300 2.099405 CCCTCCTCTGAGACTCTGTTC 58.901 57.143 6.17 0.00 41.42 3.18
4250 7305 2.661718 CCTTACCCTCCTCTGAGACTC 58.338 57.143 6.17 0.00 41.42 3.36
4311 7373 9.998106 AATTTACACATGTACAGAAAGACTAGT 57.002 29.630 0.00 0.00 0.00 2.57
4370 7433 3.557228 ACCATTCTCCTTCTGAGCATC 57.443 47.619 0.00 0.00 41.18 3.91
4372 7435 2.290514 CCAACCATTCTCCTTCTGAGCA 60.291 50.000 0.00 0.00 41.18 4.26
4374 7437 3.988976 TCCAACCATTCTCCTTCTGAG 57.011 47.619 0.00 0.00 42.90 3.35
4375 7438 4.722526 TTTCCAACCATTCTCCTTCTGA 57.277 40.909 0.00 0.00 0.00 3.27
4376 7439 5.279156 CCTTTTTCCAACCATTCTCCTTCTG 60.279 44.000 0.00 0.00 0.00 3.02
4387 7450 5.773176 GGAATTAGACTCCTTTTTCCAACCA 59.227 40.000 0.00 0.00 34.72 3.67
4391 7454 6.010219 CCTTGGAATTAGACTCCTTTTTCCA 58.990 40.000 0.00 0.00 38.94 3.53
4412 7475 2.763933 CATAGCGTCATCATCAGCCTT 58.236 47.619 0.00 0.00 0.00 4.35
4530 7593 8.729805 ACAACTCCAGCAAAATATTTCAAAAA 57.270 26.923 0.10 0.00 0.00 1.94
4601 7664 3.218453 CATTATTACCCGATTGTGCCCA 58.782 45.455 0.00 0.00 0.00 5.36
4622 7685 7.173032 TCCTTCCTAAAATTAGTTGGACTTCC 58.827 38.462 0.00 0.00 0.00 3.46
4689 7752 7.881232 TCATCTAGACTTAAACGAACCCATTTT 59.119 33.333 0.00 0.00 0.00 1.82
4866 7940 2.223548 GCAGAGTGCAAACAACACATCA 60.224 45.455 0.00 0.00 44.26 3.07
4867 7941 2.388121 GCAGAGTGCAAACAACACATC 58.612 47.619 0.00 0.00 44.26 3.06
4868 7942 1.268692 CGCAGAGTGCAAACAACACAT 60.269 47.619 0.00 0.00 45.36 3.21
4897 8519 2.547299 GGATTGCTCCTCTGATCAGG 57.453 55.000 22.42 12.75 38.65 3.86
5008 8815 7.948513 ACATACGCGAACATTTTCTAAATTC 57.051 32.000 15.93 0.00 0.00 2.17
5107 8929 7.902917 CGCGACTTTCTTCATATTTGTGATTTA 59.097 33.333 0.00 0.00 0.00 1.40
5125 8947 5.286797 GTGAACTTTTTAAAACCGCGACTTT 59.713 36.000 8.23 9.24 0.00 2.66
5127 8949 4.142643 TGTGAACTTTTTAAAACCGCGACT 60.143 37.500 8.23 0.00 0.00 4.18
5143 8965 9.936759 TGAACCTTTTTCTTAAAATTGTGAACT 57.063 25.926 0.00 0.00 33.05 3.01
5207 9029 6.559810 CCACTCGCATGTCCATAATTTAAAA 58.440 36.000 0.00 0.00 0.00 1.52
5225 9047 1.067635 CAATTTTTCTGGGGCCACTCG 60.068 52.381 6.53 0.00 0.00 4.18
5228 9050 1.336795 CGACAATTTTTCTGGGGCCAC 60.337 52.381 4.39 0.00 0.00 5.01
5230 9052 0.246360 CCGACAATTTTTCTGGGGCC 59.754 55.000 0.00 0.00 0.00 5.80
5232 9054 0.246360 GGCCGACAATTTTTCTGGGG 59.754 55.000 0.00 0.00 0.00 4.96
5234 9056 3.694072 TCATAGGCCGACAATTTTTCTGG 59.306 43.478 0.00 0.00 0.00 3.86
5235 9057 4.963276 TCATAGGCCGACAATTTTTCTG 57.037 40.909 0.00 0.00 0.00 3.02
5236 9058 5.418840 ACATTCATAGGCCGACAATTTTTCT 59.581 36.000 0.00 0.00 0.00 2.52
5237 9059 5.516339 CACATTCATAGGCCGACAATTTTTC 59.484 40.000 0.00 0.00 0.00 2.29
5238 9060 5.410067 CACATTCATAGGCCGACAATTTTT 58.590 37.500 0.00 0.00 0.00 1.94
5239 9061 4.142182 CCACATTCATAGGCCGACAATTTT 60.142 41.667 0.00 0.00 0.00 1.82
5240 9062 3.381272 CCACATTCATAGGCCGACAATTT 59.619 43.478 0.00 0.00 0.00 1.82
5241 9063 2.951642 CCACATTCATAGGCCGACAATT 59.048 45.455 0.00 0.00 0.00 2.32
5242 9064 2.092429 ACCACATTCATAGGCCGACAAT 60.092 45.455 0.00 0.00 0.00 2.71
5243 9065 1.280710 ACCACATTCATAGGCCGACAA 59.719 47.619 0.00 0.00 0.00 3.18
5244 9066 0.908910 ACCACATTCATAGGCCGACA 59.091 50.000 0.00 0.00 0.00 4.35
5245 9067 1.940613 GAACCACATTCATAGGCCGAC 59.059 52.381 0.00 0.00 37.27 4.79
5246 9068 1.134220 GGAACCACATTCATAGGCCGA 60.134 52.381 0.00 0.00 39.30 5.54
5247 9069 1.308998 GGAACCACATTCATAGGCCG 58.691 55.000 0.00 0.00 39.30 6.13
5248 9070 1.134220 TCGGAACCACATTCATAGGCC 60.134 52.381 0.00 0.00 39.30 5.19
5249 9071 2.325583 TCGGAACCACATTCATAGGC 57.674 50.000 0.00 0.00 39.30 3.93
5250 9072 3.403038 GGATCGGAACCACATTCATAGG 58.597 50.000 0.00 0.00 39.30 2.57
5251 9073 3.071602 AGGGATCGGAACCACATTCATAG 59.928 47.826 6.63 0.00 39.30 2.23
5252 9074 3.045634 AGGGATCGGAACCACATTCATA 58.954 45.455 6.63 0.00 39.30 2.15
5253 9075 1.846439 AGGGATCGGAACCACATTCAT 59.154 47.619 6.63 0.00 39.30 2.57
5254 9076 1.209504 GAGGGATCGGAACCACATTCA 59.790 52.381 6.63 0.00 39.30 2.57
5255 9077 1.475213 GGAGGGATCGGAACCACATTC 60.475 57.143 6.63 0.00 36.48 2.67
5256 9078 0.546598 GGAGGGATCGGAACCACATT 59.453 55.000 6.63 0.00 0.00 2.71
5257 9079 1.686325 CGGAGGGATCGGAACCACAT 61.686 60.000 6.63 0.00 0.00 3.21
5258 9080 2.355986 CGGAGGGATCGGAACCACA 61.356 63.158 6.63 0.00 0.00 4.17
5259 9081 1.400530 ATCGGAGGGATCGGAACCAC 61.401 60.000 6.63 0.00 0.00 4.16
5260 9082 1.075525 ATCGGAGGGATCGGAACCA 60.076 57.895 6.63 0.00 0.00 3.67
5261 9083 1.113517 TCATCGGAGGGATCGGAACC 61.114 60.000 0.00 0.00 31.28 3.62
5262 9084 0.969894 ATCATCGGAGGGATCGGAAC 59.030 55.000 0.00 0.00 31.28 3.62
5263 9085 0.969149 CATCATCGGAGGGATCGGAA 59.031 55.000 0.00 0.00 31.28 4.30
5264 9086 1.536073 GCATCATCGGAGGGATCGGA 61.536 60.000 0.00 0.00 31.28 4.55
5265 9087 1.079543 GCATCATCGGAGGGATCGG 60.080 63.158 0.00 0.00 31.28 4.18
5266 9088 1.079543 GGCATCATCGGAGGGATCG 60.080 63.158 0.00 0.00 31.28 3.69
5267 9089 0.036577 CTGGCATCATCGGAGGGATC 60.037 60.000 0.00 0.00 31.28 3.36
5268 9090 0.472543 TCTGGCATCATCGGAGGGAT 60.473 55.000 0.00 0.00 35.09 3.85
5269 9091 0.690744 TTCTGGCATCATCGGAGGGA 60.691 55.000 0.00 0.00 0.00 4.20
5270 9092 0.250209 CTTCTGGCATCATCGGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
5271 9093 0.467384 ACTTCTGGCATCATCGGAGG 59.533 55.000 0.00 0.00 0.00 4.30
5272 9094 1.863267 GACTTCTGGCATCATCGGAG 58.137 55.000 0.00 0.00 0.00 4.63
5273 9095 0.103026 CGACTTCTGGCATCATCGGA 59.897 55.000 0.00 0.00 0.00 4.55
5274 9096 0.179100 ACGACTTCTGGCATCATCGG 60.179 55.000 12.95 0.00 33.97 4.18
5275 9097 1.645034 AACGACTTCTGGCATCATCG 58.355 50.000 8.46 8.46 35.74 3.84
5276 9098 2.029728 CGAAACGACTTCTGGCATCATC 59.970 50.000 0.00 0.00 31.20 2.92
5277 9099 2.002586 CGAAACGACTTCTGGCATCAT 58.997 47.619 0.00 0.00 31.20 2.45
5278 9100 1.000394 TCGAAACGACTTCTGGCATCA 60.000 47.619 0.00 0.00 31.20 3.07
5279 9101 1.710013 TCGAAACGACTTCTGGCATC 58.290 50.000 0.00 0.00 31.20 3.91
5280 9102 1.798813 GTTCGAAACGACTTCTGGCAT 59.201 47.619 0.00 0.00 34.89 4.40
5281 9103 1.214367 GTTCGAAACGACTTCTGGCA 58.786 50.000 0.00 0.00 34.89 4.92
5282 9104 1.214367 TGTTCGAAACGACTTCTGGC 58.786 50.000 0.00 0.00 34.89 4.85
5283 9105 3.741344 AGATTGTTCGAAACGACTTCTGG 59.259 43.478 0.00 0.00 34.89 3.86
5284 9106 4.974103 AGATTGTTCGAAACGACTTCTG 57.026 40.909 0.00 0.00 34.89 3.02
5285 9107 5.770417 ACTAGATTGTTCGAAACGACTTCT 58.230 37.500 0.00 0.00 34.89 2.85
5286 9108 6.143438 TCAACTAGATTGTTCGAAACGACTTC 59.857 38.462 0.00 0.00 39.54 3.01
5287 9109 5.981315 TCAACTAGATTGTTCGAAACGACTT 59.019 36.000 0.00 0.00 39.54 3.01
5288 9110 5.526115 TCAACTAGATTGTTCGAAACGACT 58.474 37.500 0.00 0.43 39.54 4.18
5289 9111 5.817616 TCAACTAGATTGTTCGAAACGAC 57.182 39.130 0.00 0.00 39.54 4.34
5290 9112 6.831727 TTTCAACTAGATTGTTCGAAACGA 57.168 33.333 0.00 0.00 39.54 3.85
5291 9113 6.573725 CCTTTTCAACTAGATTGTTCGAAACG 59.426 38.462 0.00 0.00 39.54 3.60
5292 9114 6.856426 CCCTTTTCAACTAGATTGTTCGAAAC 59.144 38.462 0.00 0.00 39.54 2.78
5293 9115 6.768861 TCCCTTTTCAACTAGATTGTTCGAAA 59.231 34.615 0.00 0.00 39.54 3.46
5294 9116 6.204108 GTCCCTTTTCAACTAGATTGTTCGAA 59.796 38.462 0.00 0.00 39.54 3.71
5295 9117 5.699458 GTCCCTTTTCAACTAGATTGTTCGA 59.301 40.000 0.00 0.00 39.54 3.71
5296 9118 5.468746 TGTCCCTTTTCAACTAGATTGTTCG 59.531 40.000 0.00 0.00 39.54 3.95
5297 9119 6.877611 TGTCCCTTTTCAACTAGATTGTTC 57.122 37.500 0.00 0.00 39.54 3.18
5323 9145 1.136891 GCAACTGTGCCTTGTTCCTTT 59.863 47.619 0.00 0.00 45.68 3.11
5336 9158 2.309613 ACACATCCAACATGCAACTGT 58.690 42.857 0.00 0.00 0.00 3.55
5348 9170 6.764379 TGTCTCAATTGTAAGTACACATCCA 58.236 36.000 5.13 0.00 35.64 3.41
5355 9177 7.298854 GCTCCTTTTGTCTCAATTGTAAGTAC 58.701 38.462 5.13 0.00 0.00 2.73
5356 9178 6.430000 GGCTCCTTTTGTCTCAATTGTAAGTA 59.570 38.462 5.13 0.00 0.00 2.24
5388 9210 1.752694 CTTACATGCAACCCGGGGG 60.753 63.158 27.92 18.18 42.03 5.40
5391 9213 1.024271 CATCCTTACATGCAACCCGG 58.976 55.000 0.00 0.00 0.00 5.73
5392 9214 1.024271 CCATCCTTACATGCAACCCG 58.976 55.000 0.00 0.00 0.00 5.28
5393 9215 2.024414 GTCCATCCTTACATGCAACCC 58.976 52.381 0.00 0.00 0.00 4.11
5394 9216 3.004752 AGTCCATCCTTACATGCAACC 57.995 47.619 0.00 0.00 0.00 3.77
5411 9233 4.270808 CACTTTTTGTCCCAATTGCAAGTC 59.729 41.667 4.94 0.00 0.00 3.01
5420 9242 7.721842 TCATATGTAACTCACTTTTTGTCCCAA 59.278 33.333 1.90 0.00 0.00 4.12
5430 9252 9.857656 ATCCATCATTTCATATGTAACTCACTT 57.142 29.630 1.90 0.00 0.00 3.16
5435 9257 9.631257 TGTGAATCCATCATTTCATATGTAACT 57.369 29.630 1.90 0.00 40.97 2.24
5481 9303 2.791383 TTTTCATTGCAACTGGGTCG 57.209 45.000 0.00 0.00 0.00 4.79
5483 9305 3.496515 CCCATTTTTCATTGCAACTGGGT 60.497 43.478 0.00 0.00 37.80 4.51
5486 9308 3.429543 CGACCCATTTTTCATTGCAACTG 59.570 43.478 0.00 1.67 0.00 3.16
5488 9310 3.428534 GTCGACCCATTTTTCATTGCAAC 59.571 43.478 3.51 0.00 0.00 4.17
5489 9311 3.553922 GGTCGACCCATTTTTCATTGCAA 60.554 43.478 24.75 0.00 0.00 4.08
5490 9312 2.029470 GGTCGACCCATTTTTCATTGCA 60.029 45.455 24.75 0.00 0.00 4.08
5522 9344 1.000843 TCCATCCTCGACACACAACTG 59.999 52.381 0.00 0.00 0.00 3.16
5528 9350 2.521126 TGTAAGTCCATCCTCGACACA 58.479 47.619 0.00 0.00 32.41 3.72
5529 9351 3.056749 AGTTGTAAGTCCATCCTCGACAC 60.057 47.826 0.00 0.00 32.41 3.67
5565 9387 0.545787 AGTCCACCCCCGATACACAA 60.546 55.000 0.00 0.00 0.00 3.33
5568 9390 1.906105 GCAAGTCCACCCCCGATACA 61.906 60.000 0.00 0.00 0.00 2.29
5571 9393 2.534396 TTGCAAGTCCACCCCCGAT 61.534 57.895 0.00 0.00 0.00 4.18
5666 9488 0.320683 TCAGACCCGACATGCAACTG 60.321 55.000 0.00 0.00 0.00 3.16
5680 9502 3.198068 TGTCTCAGTTGCAAGTTCAGAC 58.802 45.455 24.49 24.49 0.00 3.51
5702 9524 0.474660 ACTGAGGCTCTGGTCCCTTT 60.475 55.000 22.99 0.00 0.00 3.11
5709 9531 0.322277 ACATGCAACTGAGGCTCTGG 60.322 55.000 22.99 14.65 0.00 3.86
5711 9533 0.390866 CGACATGCAACTGAGGCTCT 60.391 55.000 16.72 0.00 0.00 4.09
5713 9535 0.671781 GTCGACATGCAACTGAGGCT 60.672 55.000 11.55 0.00 0.00 4.58
5732 9554 0.613260 TCCCAGGTTCAAGTCCATCG 59.387 55.000 0.00 0.00 0.00 3.84
5767 9589 0.250901 ACCTGACATGCAACTGGACC 60.251 55.000 16.87 0.00 0.00 4.46
5780 9602 1.197721 CCGATGCAAGTTCAACCTGAC 59.802 52.381 0.00 0.00 0.00 3.51
5782 9604 0.523072 CCCGATGCAAGTTCAACCTG 59.477 55.000 0.00 0.00 0.00 4.00
5783 9605 0.609131 CCCCGATGCAAGTTCAACCT 60.609 55.000 0.00 0.00 0.00 3.50
5786 9609 0.109532 TGTCCCCGATGCAAGTTCAA 59.890 50.000 0.00 0.00 0.00 2.69
5790 9613 1.247567 CTTTTGTCCCCGATGCAAGT 58.752 50.000 0.00 0.00 0.00 3.16
5811 9634 1.675641 ATGCAACTTGGGCTCGACC 60.676 57.895 0.00 0.00 37.93 4.79
5816 9639 0.957395 CTCGACATGCAACTTGGGCT 60.957 55.000 0.00 0.00 0.00 5.19
5818 9641 0.321564 TCCTCGACATGCAACTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
5819 9642 1.742761 ATCCTCGACATGCAACTTGG 58.257 50.000 0.00 0.00 0.00 3.61
5820 9643 4.393062 AGTTTATCCTCGACATGCAACTTG 59.607 41.667 0.00 0.00 0.00 3.16
5821 9644 4.579869 AGTTTATCCTCGACATGCAACTT 58.420 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.