Multiple sequence alignment - TraesCS2D01G128200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G128200 chr2D 100.000 4420 0 0 1 4420 74926139 74930558 0.000000e+00 8163.0
1 TraesCS2D01G128200 chr2D 85.740 547 56 13 7 541 392499655 392499119 3.860000e-155 558.0
2 TraesCS2D01G128200 chr2D 92.857 42 1 2 3941 3981 74930001 74930041 4.770000e-05 60.2
3 TraesCS2D01G128200 chr2D 92.857 42 1 2 3863 3903 74930079 74930119 4.770000e-05 60.2
4 TraesCS2D01G128200 chr2B 96.383 1410 44 2 2381 3790 113914256 113915658 0.000000e+00 2314.0
5 TraesCS2D01G128200 chr2B 92.289 1232 30 21 1130 2314 113913019 113914232 0.000000e+00 1688.0
6 TraesCS2D01G128200 chr2B 83.184 559 70 13 1 539 1206779 1206225 1.430000e-134 490.0
7 TraesCS2D01G128200 chr2B 91.026 234 18 2 3901 4134 113916105 113916335 3.320000e-81 313.0
8 TraesCS2D01G128200 chr2B 85.556 180 10 4 965 1131 113912156 113912332 1.630000e-39 174.0
9 TraesCS2D01G128200 chr2B 97.778 90 2 0 4330 4419 114040407 114040496 5.920000e-34 156.0
10 TraesCS2D01G128200 chr2B 96.552 58 2 0 4225 4282 113916620 113916677 3.640000e-16 97.1
11 TraesCS2D01G128200 chr2A 91.817 1332 80 13 2424 3753 74096266 74097570 0.000000e+00 1829.0
12 TraesCS2D01G128200 chr2A 87.194 1390 81 45 957 2306 74094861 74096193 0.000000e+00 1491.0
13 TraesCS2D01G128200 chr2A 94.421 233 13 0 4187 4419 74099542 74099774 4.200000e-95 359.0
14 TraesCS2D01G128200 chr2A 92.609 230 16 1 3959 4187 74099147 74099376 3.300000e-86 329.0
15 TraesCS2D01G128200 chr2A 90.503 179 11 2 666 842 74094529 74094703 9.560000e-57 231.0
16 TraesCS2D01G128200 chr2A 84.694 98 1 4 881 964 74094706 74094803 7.880000e-13 86.1
17 TraesCS2D01G128200 chrUn 86.429 560 54 12 1 543 244159905 244160459 1.060000e-165 593.0
18 TraesCS2D01G128200 chrUn 86.429 560 54 12 1 543 244172540 244173094 1.060000e-165 593.0
19 TraesCS2D01G128200 chrUn 86.429 560 54 12 1 543 265327176 265326622 1.060000e-165 593.0
20 TraesCS2D01G128200 chr5A 85.331 559 61 12 1 541 299569250 299569805 3.860000e-155 558.0
21 TraesCS2D01G128200 chr5A 86.228 167 18 4 380 543 535584628 535584464 4.540000e-40 176.0
22 TraesCS2D01G128200 chr5D 84.775 578 47 12 1 544 543311633 543311063 3.890000e-150 542.0
23 TraesCS2D01G128200 chr5D 78.407 565 91 16 6 543 398203767 398204327 5.480000e-89 339.0
24 TraesCS2D01G128200 chr1B 84.838 554 54 17 1 543 465937613 465937079 8.420000e-147 531.0
25 TraesCS2D01G128200 chr1B 82.531 561 77 14 1 544 268652202 268651646 1.440000e-129 473.0
26 TraesCS2D01G128200 chr7D 86.624 471 46 10 1 454 113573396 113572926 5.100000e-139 505.0
27 TraesCS2D01G128200 chr7D 78.803 585 81 27 1 544 236091044 236090462 1.960000e-93 353.0
28 TraesCS2D01G128200 chr7B 83.509 570 57 16 1 543 40281720 40282279 8.540000e-137 497.0
29 TraesCS2D01G128200 chr7B 88.050 159 13 3 388 543 739947195 739947040 2.720000e-42 183.0
30 TraesCS2D01G128200 chr6D 85.535 477 53 11 82 543 444705384 444705859 6.650000e-133 484.0
31 TraesCS2D01G128200 chr6B 82.601 569 75 15 1 545 516873182 516873750 8.600000e-132 481.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G128200 chr2D 74926139 74930558 4419 False 2761.133333 8163 95.238000 1 4420 3 chr2D.!!$F1 4419
1 TraesCS2D01G128200 chr2D 392499119 392499655 536 True 558.000000 558 85.740000 7 541 1 chr2D.!!$R1 534
2 TraesCS2D01G128200 chr2B 113912156 113916677 4521 False 917.220000 2314 92.361200 965 4282 5 chr2B.!!$F2 3317
3 TraesCS2D01G128200 chr2B 1206225 1206779 554 True 490.000000 490 83.184000 1 539 1 chr2B.!!$R1 538
4 TraesCS2D01G128200 chr2A 74094529 74099774 5245 False 720.850000 1829 90.206333 666 4419 6 chr2A.!!$F1 3753
5 TraesCS2D01G128200 chrUn 244159905 244160459 554 False 593.000000 593 86.429000 1 543 1 chrUn.!!$F1 542
6 TraesCS2D01G128200 chrUn 244172540 244173094 554 False 593.000000 593 86.429000 1 543 1 chrUn.!!$F2 542
7 TraesCS2D01G128200 chrUn 265326622 265327176 554 True 593.000000 593 86.429000 1 543 1 chrUn.!!$R1 542
8 TraesCS2D01G128200 chr5A 299569250 299569805 555 False 558.000000 558 85.331000 1 541 1 chr5A.!!$F1 540
9 TraesCS2D01G128200 chr5D 543311063 543311633 570 True 542.000000 542 84.775000 1 544 1 chr5D.!!$R1 543
10 TraesCS2D01G128200 chr5D 398203767 398204327 560 False 339.000000 339 78.407000 6 543 1 chr5D.!!$F1 537
11 TraesCS2D01G128200 chr1B 465937079 465937613 534 True 531.000000 531 84.838000 1 543 1 chr1B.!!$R2 542
12 TraesCS2D01G128200 chr1B 268651646 268652202 556 True 473.000000 473 82.531000 1 544 1 chr1B.!!$R1 543
13 TraesCS2D01G128200 chr7D 236090462 236091044 582 True 353.000000 353 78.803000 1 544 1 chr7D.!!$R2 543
14 TraesCS2D01G128200 chr7B 40281720 40282279 559 False 497.000000 497 83.509000 1 543 1 chr7B.!!$F1 542
15 TraesCS2D01G128200 chr6B 516873182 516873750 568 False 481.000000 481 82.601000 1 545 1 chr6B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 834 0.036164 TGAAAGCCACCGTACTGCAT 59.964 50.0 0.0 0.0 0.00 3.96 F
1329 2219 0.037882 TTGCTCAACGCTCCTCTCTG 60.038 55.0 0.0 0.0 40.11 3.35 F
2741 3688 0.317160 TCTTGCTCAGTGTGTACCCG 59.683 55.0 0.0 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2696 3643 0.532573 TCCAGGTGAGCAGAATCGAC 59.467 55.0 0.0 0.0 0.0 4.20 R
2772 3719 0.321653 CCCGTTCCAACTTCCCTCAG 60.322 60.0 0.0 0.0 0.0 3.35 R
3632 4583 0.037447 AGAGAAAGGCAAGGCAGGAC 59.963 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
386 452 2.618442 AATTTATGCCCATTTGCCGG 57.382 45.000 0.00 0.00 0.00 6.13
391 457 1.786937 ATGCCCATTTGCCGGATTTA 58.213 45.000 5.05 0.00 0.00 1.40
545 631 0.249657 GGCTGGAGATGCTCTAACCG 60.250 60.000 0.00 0.00 0.00 4.44
546 632 0.249657 GCTGGAGATGCTCTAACCGG 60.250 60.000 0.00 0.00 0.00 5.28
547 633 0.249657 CTGGAGATGCTCTAACCGGC 60.250 60.000 0.00 0.00 0.00 6.13
548 634 1.300233 GGAGATGCTCTAACCGGCG 60.300 63.158 0.00 0.00 0.00 6.46
549 635 1.734137 GAGATGCTCTAACCGGCGA 59.266 57.895 9.30 0.00 0.00 5.54
550 636 0.102481 GAGATGCTCTAACCGGCGAA 59.898 55.000 9.30 0.00 0.00 4.70
551 637 0.535335 AGATGCTCTAACCGGCGAAA 59.465 50.000 9.30 0.00 0.00 3.46
552 638 1.066430 AGATGCTCTAACCGGCGAAAA 60.066 47.619 9.30 0.00 0.00 2.29
553 639 1.940613 GATGCTCTAACCGGCGAAAAT 59.059 47.619 9.30 0.00 0.00 1.82
554 640 1.816074 TGCTCTAACCGGCGAAAATT 58.184 45.000 9.30 0.00 0.00 1.82
555 641 2.156098 TGCTCTAACCGGCGAAAATTT 58.844 42.857 9.30 0.00 0.00 1.82
556 642 2.095466 TGCTCTAACCGGCGAAAATTTG 60.095 45.455 9.30 0.00 0.00 2.32
557 643 2.731027 GCTCTAACCGGCGAAAATTTGG 60.731 50.000 9.30 0.00 0.00 3.28
558 644 1.200484 TCTAACCGGCGAAAATTTGGC 59.800 47.619 9.30 4.07 0.00 4.52
559 645 1.201414 CTAACCGGCGAAAATTTGGCT 59.799 47.619 9.30 0.00 35.13 4.75
560 646 0.391228 AACCGGCGAAAATTTGGCTT 59.609 45.000 9.30 0.00 35.13 4.35
561 647 0.038618 ACCGGCGAAAATTTGGCTTC 60.039 50.000 9.30 0.00 35.13 3.86
562 648 0.735978 CCGGCGAAAATTTGGCTTCC 60.736 55.000 9.30 0.00 35.13 3.46
563 649 1.070471 CGGCGAAAATTTGGCTTCCG 61.070 55.000 12.17 4.39 35.13 4.30
564 650 0.735978 GGCGAAAATTTGGCTTCCGG 60.736 55.000 12.17 0.00 34.56 5.14
565 651 0.242555 GCGAAAATTTGGCTTCCGGA 59.757 50.000 0.00 0.00 0.00 5.14
566 652 1.732405 GCGAAAATTTGGCTTCCGGAG 60.732 52.381 3.34 0.00 0.00 4.63
567 653 1.810151 CGAAAATTTGGCTTCCGGAGA 59.190 47.619 3.34 0.00 0.00 3.71
568 654 2.414161 CGAAAATTTGGCTTCCGGAGAC 60.414 50.000 3.34 1.47 0.00 3.36
569 655 2.286365 AAATTTGGCTTCCGGAGACA 57.714 45.000 3.34 4.61 43.35 3.41
570 656 2.514458 AATTTGGCTTCCGGAGACAT 57.486 45.000 3.34 0.00 44.78 3.06
571 657 3.644966 AATTTGGCTTCCGGAGACATA 57.355 42.857 3.34 3.27 44.78 2.29
572 658 3.644966 ATTTGGCTTCCGGAGACATAA 57.355 42.857 3.34 5.70 44.78 1.90
573 659 2.396590 TTGGCTTCCGGAGACATAAC 57.603 50.000 3.34 0.00 44.78 1.89
574 660 1.568504 TGGCTTCCGGAGACATAACT 58.431 50.000 3.34 0.00 38.93 2.24
575 661 1.207089 TGGCTTCCGGAGACATAACTG 59.793 52.381 3.34 0.00 38.93 3.16
576 662 1.473434 GGCTTCCGGAGACATAACTGG 60.473 57.143 3.34 0.00 31.73 4.00
577 663 1.473434 GCTTCCGGAGACATAACTGGG 60.473 57.143 3.34 0.00 33.75 4.45
578 664 0.539986 TTCCGGAGACATAACTGGGC 59.460 55.000 3.34 0.00 33.75 5.36
579 665 1.146263 CCGGAGACATAACTGGGCC 59.854 63.158 0.00 0.00 0.00 5.80
580 666 1.227263 CGGAGACATAACTGGGCCG 60.227 63.158 0.00 0.00 0.00 6.13
581 667 1.905512 GGAGACATAACTGGGCCGT 59.094 57.895 0.00 0.00 0.00 5.68
582 668 0.252197 GGAGACATAACTGGGCCGTT 59.748 55.000 15.89 15.89 0.00 4.44
583 669 1.339727 GGAGACATAACTGGGCCGTTT 60.340 52.381 16.61 6.84 0.00 3.60
584 670 2.433436 GAGACATAACTGGGCCGTTTT 58.567 47.619 16.61 8.29 0.00 2.43
585 671 2.817844 GAGACATAACTGGGCCGTTTTT 59.182 45.455 16.61 2.13 0.00 1.94
607 693 2.559998 AACGCCTGCGATAAAAATGG 57.440 45.000 19.52 0.00 42.83 3.16
608 694 1.459450 ACGCCTGCGATAAAAATGGT 58.541 45.000 19.52 0.00 42.83 3.55
609 695 1.400494 ACGCCTGCGATAAAAATGGTC 59.600 47.619 19.52 0.00 42.83 4.02
610 696 1.670811 CGCCTGCGATAAAAATGGTCT 59.329 47.619 5.43 0.00 42.83 3.85
611 697 2.097466 CGCCTGCGATAAAAATGGTCTT 59.903 45.455 5.43 0.00 42.83 3.01
612 698 3.438360 GCCTGCGATAAAAATGGTCTTG 58.562 45.455 0.00 0.00 0.00 3.02
613 699 3.734902 GCCTGCGATAAAAATGGTCTTGG 60.735 47.826 0.00 0.00 0.00 3.61
614 700 3.181487 CCTGCGATAAAAATGGTCTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
615 701 3.691575 TGCGATAAAAATGGTCTTGGGA 58.308 40.909 0.00 0.00 0.00 4.37
616 702 4.082845 TGCGATAAAAATGGTCTTGGGAA 58.917 39.130 0.00 0.00 0.00 3.97
617 703 4.082463 TGCGATAAAAATGGTCTTGGGAAC 60.082 41.667 0.00 0.00 0.00 3.62
630 716 2.597903 GGAACCTGATGGGGGAGC 59.402 66.667 0.00 0.00 40.03 4.70
631 717 2.190578 GAACCTGATGGGGGAGCG 59.809 66.667 0.00 0.00 40.03 5.03
632 718 3.406595 GAACCTGATGGGGGAGCGG 62.407 68.421 0.00 0.00 40.03 5.52
635 721 4.181010 CTGATGGGGGAGCGGGTG 62.181 72.222 0.00 0.00 0.00 4.61
637 723 2.766651 GATGGGGGAGCGGGTGTA 60.767 66.667 0.00 0.00 0.00 2.90
638 724 2.768344 ATGGGGGAGCGGGTGTAG 60.768 66.667 0.00 0.00 0.00 2.74
639 725 3.326385 ATGGGGGAGCGGGTGTAGA 62.326 63.158 0.00 0.00 0.00 2.59
640 726 2.446036 GGGGGAGCGGGTGTAGAT 60.446 66.667 0.00 0.00 0.00 1.98
641 727 2.808206 GGGGGAGCGGGTGTAGATG 61.808 68.421 0.00 0.00 0.00 2.90
642 728 2.109181 GGGAGCGGGTGTAGATGC 59.891 66.667 0.00 0.00 0.00 3.91
643 729 2.435693 GGGAGCGGGTGTAGATGCT 61.436 63.158 0.00 0.00 41.11 3.79
644 730 4.740235 GAGCGGGTGTAGATGCTC 57.260 61.111 0.00 0.00 45.95 4.26
645 731 4.364318 AGCGGGTGTAGATGCTCT 57.636 55.556 0.00 0.00 30.37 4.09
646 732 2.596776 AGCGGGTGTAGATGCTCTT 58.403 52.632 0.00 0.00 30.37 2.85
647 733 1.776662 AGCGGGTGTAGATGCTCTTA 58.223 50.000 0.00 0.00 30.37 2.10
648 734 2.320781 AGCGGGTGTAGATGCTCTTAT 58.679 47.619 0.00 0.00 30.37 1.73
649 735 3.497332 AGCGGGTGTAGATGCTCTTATA 58.503 45.455 0.00 0.00 30.37 0.98
650 736 3.256136 AGCGGGTGTAGATGCTCTTATAC 59.744 47.826 0.00 0.00 30.37 1.47
651 737 3.822996 CGGGTGTAGATGCTCTTATACG 58.177 50.000 0.00 0.00 0.00 3.06
652 738 3.252701 CGGGTGTAGATGCTCTTATACGT 59.747 47.826 0.00 0.00 0.00 3.57
653 739 4.453478 CGGGTGTAGATGCTCTTATACGTA 59.547 45.833 0.00 0.00 0.00 3.57
654 740 5.049198 CGGGTGTAGATGCTCTTATACGTAA 60.049 44.000 0.00 0.00 0.00 3.18
656 742 5.857517 GGTGTAGATGCTCTTATACGTAAGC 59.142 44.000 9.55 9.55 45.62 3.09
657 743 6.436261 GTGTAGATGCTCTTATACGTAAGCA 58.564 40.000 19.00 19.00 45.62 3.91
658 744 6.360148 GTGTAGATGCTCTTATACGTAAGCAC 59.640 42.308 19.07 13.63 45.62 4.40
659 745 5.515797 AGATGCTCTTATACGTAAGCACA 57.484 39.130 19.07 8.15 45.62 4.57
660 746 5.902681 AGATGCTCTTATACGTAAGCACAA 58.097 37.500 19.07 0.79 45.62 3.33
661 747 5.980116 AGATGCTCTTATACGTAAGCACAAG 59.020 40.000 19.07 9.07 45.62 3.16
662 748 4.430007 TGCTCTTATACGTAAGCACAAGG 58.570 43.478 14.16 3.43 45.62 3.61
663 749 4.081862 TGCTCTTATACGTAAGCACAAGGT 60.082 41.667 14.16 0.00 45.62 3.50
664 750 4.267928 GCTCTTATACGTAAGCACAAGGTG 59.732 45.833 11.24 0.00 45.62 4.00
683 769 3.509575 GGTGATCTAGCCATCTAGGTGAG 59.490 52.174 3.99 0.00 42.01 3.51
690 776 1.693627 CCATCTAGGTGAGGCGTACT 58.306 55.000 3.99 0.00 0.00 2.73
745 831 0.599204 ACGTGAAAGCCACCGTACTG 60.599 55.000 0.00 0.00 42.76 2.74
748 834 0.036164 TGAAAGCCACCGTACTGCAT 59.964 50.000 0.00 0.00 0.00 3.96
758 844 2.423892 ACCGTACTGCATGACTACAGAG 59.576 50.000 0.00 0.00 37.35 3.35
765 851 0.747255 CATGACTACAGAGGACCCCG 59.253 60.000 0.00 0.00 0.00 5.73
767 853 0.629596 TGACTACAGAGGACCCCGAT 59.370 55.000 0.00 0.00 0.00 4.18
769 855 0.106116 ACTACAGAGGACCCCGATCC 60.106 60.000 0.00 0.00 39.28 3.36
789 875 7.088272 CGATCCGGATACTTATATGTCAAACA 58.912 38.462 19.15 0.00 0.00 2.83
825 913 3.485947 TTTCTGAATAATGCACCGCAC 57.514 42.857 0.00 0.00 43.04 5.34
842 930 1.883926 GCACGCCCCTTTCTAAGAAAA 59.116 47.619 0.00 0.00 0.00 2.29
852 940 5.523013 CTTTCTAAGAAAAGGAGTGAGCG 57.477 43.478 0.00 0.00 33.49 5.03
853 941 4.866508 TTCTAAGAAAAGGAGTGAGCGA 57.133 40.909 0.00 0.00 0.00 4.93
854 942 4.442375 TCTAAGAAAAGGAGTGAGCGAG 57.558 45.455 0.00 0.00 0.00 5.03
855 943 1.802069 AAGAAAAGGAGTGAGCGAGC 58.198 50.000 0.00 0.00 0.00 5.03
856 944 0.681733 AGAAAAGGAGTGAGCGAGCA 59.318 50.000 0.00 0.00 0.00 4.26
857 945 1.074752 GAAAAGGAGTGAGCGAGCAG 58.925 55.000 0.00 0.00 0.00 4.24
858 946 0.321122 AAAAGGAGTGAGCGAGCAGG 60.321 55.000 0.00 0.00 0.00 4.85
859 947 2.794820 AAAGGAGTGAGCGAGCAGGC 62.795 60.000 0.00 0.00 0.00 4.85
861 949 4.427661 GAGTGAGCGAGCAGGCGT 62.428 66.667 0.00 0.00 38.18 5.68
862 950 3.052620 GAGTGAGCGAGCAGGCGTA 62.053 63.158 0.00 0.00 38.18 4.42
863 951 2.881352 GTGAGCGAGCAGGCGTAC 60.881 66.667 0.00 0.00 38.18 3.67
864 952 3.062466 TGAGCGAGCAGGCGTACT 61.062 61.111 0.00 0.00 38.18 2.73
865 953 1.747745 TGAGCGAGCAGGCGTACTA 60.748 57.895 0.00 0.00 38.18 1.82
866 954 1.009449 GAGCGAGCAGGCGTACTAG 60.009 63.158 0.00 0.00 38.18 2.57
867 955 1.437772 GAGCGAGCAGGCGTACTAGA 61.438 60.000 0.00 0.00 38.18 2.43
868 956 0.820074 AGCGAGCAGGCGTACTAGAT 60.820 55.000 0.00 0.00 38.18 1.98
869 957 0.873054 GCGAGCAGGCGTACTAGATA 59.127 55.000 0.00 0.00 0.00 1.98
870 958 1.266175 GCGAGCAGGCGTACTAGATAA 59.734 52.381 0.00 0.00 0.00 1.75
871 959 2.287427 GCGAGCAGGCGTACTAGATAAA 60.287 50.000 0.00 0.00 0.00 1.40
872 960 3.612004 GCGAGCAGGCGTACTAGATAAAT 60.612 47.826 0.00 0.00 0.00 1.40
873 961 3.914966 CGAGCAGGCGTACTAGATAAATG 59.085 47.826 0.00 0.00 0.00 2.32
874 962 3.654414 AGCAGGCGTACTAGATAAATGC 58.346 45.455 0.00 0.00 0.00 3.56
875 963 2.737252 GCAGGCGTACTAGATAAATGCC 59.263 50.000 0.00 5.57 41.27 4.40
876 964 3.802329 GCAGGCGTACTAGATAAATGCCA 60.802 47.826 18.03 0.00 43.35 4.92
877 965 3.990469 CAGGCGTACTAGATAAATGCCAG 59.010 47.826 18.03 10.59 43.35 4.85
878 966 2.737252 GGCGTACTAGATAAATGCCAGC 59.263 50.000 13.69 0.00 40.66 4.85
879 967 2.737252 GCGTACTAGATAAATGCCAGCC 59.263 50.000 0.00 0.00 0.00 4.85
923 1021 2.165437 GAGCAAGCTGAGCACTACTAGT 59.835 50.000 7.39 0.00 0.00 2.57
926 1024 3.119459 GCAAGCTGAGCACTACTAGTACA 60.119 47.826 7.39 0.00 0.00 2.90
1119 1301 2.361610 CACAGGGCGCAAGGGATT 60.362 61.111 10.83 0.00 38.28 3.01
1285 2156 6.261381 ACAGTATGGTACGAGATTCTTCTCTC 59.739 42.308 0.00 0.00 43.25 3.20
1327 2217 1.512926 TTTTGCTCAACGCTCCTCTC 58.487 50.000 0.00 0.00 40.11 3.20
1329 2219 0.037882 TTGCTCAACGCTCCTCTCTG 60.038 55.000 0.00 0.00 40.11 3.35
1383 2273 4.908601 TGCTATATATGGTCACCCAAGG 57.091 45.455 0.00 0.00 46.04 3.61
1384 2274 3.587061 TGCTATATATGGTCACCCAAGGG 59.413 47.826 2.91 2.91 46.04 3.95
1385 2275 3.622455 GCTATATATGGTCACCCAAGGGC 60.622 52.174 4.70 0.00 46.04 5.19
1386 2276 1.900254 TATATGGTCACCCAAGGGCA 58.100 50.000 4.70 0.00 46.04 5.36
1468 2361 8.362860 TCTACTGTATTCTAGTAGTAGCAACG 57.637 38.462 10.82 0.00 44.96 4.10
1570 2490 1.169661 TGTTCTGGTTTGGCGCGAAT 61.170 50.000 12.10 0.00 0.00 3.34
1759 2679 4.556942 TGCTTTCGCAATGGATAAGATG 57.443 40.909 0.00 0.00 44.62 2.90
1815 2735 1.636988 AAATGTACGTAGTCCGCAGC 58.363 50.000 0.00 0.00 43.93 5.25
1816 2736 0.528924 AATGTACGTAGTCCGCAGCA 59.471 50.000 0.00 0.00 43.93 4.41
1860 2780 9.566530 CTGAATTCTAGTATGAATATCTGTCCG 57.433 37.037 7.05 0.00 35.82 4.79
1916 2836 8.180920 CACTAGACATAGACATAGGAATGATCG 58.819 40.741 0.00 0.00 33.43 3.69
2120 3052 1.342174 AGGCAGCCAAGAACACAAATG 59.658 47.619 15.80 0.00 0.00 2.32
2161 3093 1.338020 GACAAAGCAGTCCAAGGGTTG 59.662 52.381 0.00 0.00 32.36 3.77
2301 3233 2.344592 ACCAGGATTCAGGTAACACCA 58.655 47.619 0.00 0.00 41.95 4.17
2306 3238 1.353022 GATTCAGGTAACACCACCCCA 59.647 52.381 0.00 0.00 41.95 4.96
2307 3239 0.475044 TTCAGGTAACACCACCCCAC 59.525 55.000 0.00 0.00 41.95 4.61
2308 3240 0.694783 TCAGGTAACACCACCCCACA 60.695 55.000 0.00 0.00 41.95 4.17
2309 3241 0.404040 CAGGTAACACCACCCCACAT 59.596 55.000 0.00 0.00 41.95 3.21
2310 3242 1.631388 CAGGTAACACCACCCCACATA 59.369 52.381 0.00 0.00 41.95 2.29
2311 3243 2.241176 CAGGTAACACCACCCCACATAT 59.759 50.000 0.00 0.00 41.95 1.78
2312 3244 3.456644 CAGGTAACACCACCCCACATATA 59.543 47.826 0.00 0.00 41.95 0.86
2313 3245 4.104102 CAGGTAACACCACCCCACATATAT 59.896 45.833 0.00 0.00 41.95 0.86
2314 3246 5.308497 CAGGTAACACCACCCCACATATATA 59.692 44.000 0.00 0.00 41.95 0.86
2315 3247 6.012858 CAGGTAACACCACCCCACATATATAT 60.013 42.308 0.00 0.00 41.95 0.86
2316 3248 7.181305 CAGGTAACACCACCCCACATATATATA 59.819 40.741 0.00 0.00 41.95 0.86
2317 3249 7.910010 AGGTAACACCACCCCACATATATATAT 59.090 37.037 0.00 0.00 41.95 0.86
2318 3250 9.216148 GGTAACACCACCCCACATATATATATA 57.784 37.037 4.90 4.92 38.42 0.86
2477 3424 2.924421 CCCACAAGAAGGAATAGGCTC 58.076 52.381 0.00 0.00 0.00 4.70
2741 3688 0.317160 TCTTGCTCAGTGTGTACCCG 59.683 55.000 0.00 0.00 0.00 5.28
2772 3719 2.838693 GGCTACGGGAGGAGGTCC 60.839 72.222 0.00 0.00 42.67 4.46
2788 3735 1.271434 GGTCCTGAGGGAAGTTGGAAC 60.271 57.143 0.00 0.00 44.15 3.62
2841 3788 6.469782 AACTGAAAGAGGCAAGATCAAAAA 57.530 33.333 0.00 0.00 37.43 1.94
2870 3817 9.956720 CAACCCTTATCTTGATTTAATGATCAC 57.043 33.333 0.00 0.00 35.86 3.06
3155 4106 0.545548 AGAAGGTCTGGGGTGAGGAC 60.546 60.000 0.00 0.00 0.00 3.85
3175 4126 1.359459 GCGGATCAGTTCAACCCGAC 61.359 60.000 7.10 0.00 42.49 4.79
3287 4238 1.638388 TTGCGATGCTCGAAGCCAAG 61.638 55.000 9.32 0.00 43.74 3.61
3290 4241 1.746727 CGATGCTCGAAGCCAAGTCG 61.747 60.000 4.73 5.86 43.74 4.18
3293 4244 1.214589 GCTCGAAGCCAAGTCGGTA 59.785 57.895 0.00 0.00 39.01 4.02
3320 4271 1.270358 ACGGTTCTGCAGAAGTTCTCC 60.270 52.381 29.13 23.08 34.27 3.71
3337 4288 0.323542 TCCTTCACTCTCTCCCCGAC 60.324 60.000 0.00 0.00 0.00 4.79
3341 4292 0.255318 TCACTCTCTCCCCGACCTAC 59.745 60.000 0.00 0.00 0.00 3.18
3350 4301 4.824166 CCGACCTACGTCCACGCG 62.824 72.222 3.53 3.53 44.43 6.01
3422 4373 3.691118 TGAAGCTGCTGGATGTATGAAAC 59.309 43.478 1.35 0.00 0.00 2.78
3460 4411 5.237127 TCTGAATGTTGCAGTACAGAACTTG 59.763 40.000 0.00 0.00 35.76 3.16
3478 4429 3.005155 ACTTGTGAATTTTCTGCCTGAGC 59.995 43.478 0.00 0.00 40.48 4.26
3491 4442 3.837570 CTGAGCTGGCTGTGGTGCA 62.838 63.158 0.00 0.00 34.04 4.57
3708 4660 0.387565 GCACCGTTGTGGATGGTTTT 59.612 50.000 0.00 0.00 45.67 2.43
3789 4741 2.639347 TGCTCTGGAACTTGAAGATGGA 59.361 45.455 0.00 0.00 0.00 3.41
3790 4742 3.006247 GCTCTGGAACTTGAAGATGGAC 58.994 50.000 0.00 0.00 0.00 4.02
3791 4743 3.257393 CTCTGGAACTTGAAGATGGACG 58.743 50.000 0.00 0.00 0.00 4.79
3792 4744 2.632996 TCTGGAACTTGAAGATGGACGT 59.367 45.455 0.00 0.00 0.00 4.34
3793 4745 2.996621 CTGGAACTTGAAGATGGACGTC 59.003 50.000 7.13 7.13 0.00 4.34
3794 4746 2.632996 TGGAACTTGAAGATGGACGTCT 59.367 45.455 16.46 0.00 0.00 4.18
3795 4747 2.996621 GGAACTTGAAGATGGACGTCTG 59.003 50.000 16.46 0.00 0.00 3.51
3796 4748 2.751166 ACTTGAAGATGGACGTCTGG 57.249 50.000 16.46 0.00 0.00 3.86
3797 4749 2.248248 ACTTGAAGATGGACGTCTGGA 58.752 47.619 16.46 0.00 0.00 3.86
3798 4750 2.232452 ACTTGAAGATGGACGTCTGGAG 59.768 50.000 16.46 5.31 0.00 3.86
3799 4751 2.215942 TGAAGATGGACGTCTGGAGA 57.784 50.000 16.46 0.00 0.00 3.71
3800 4752 2.525368 TGAAGATGGACGTCTGGAGAA 58.475 47.619 16.46 0.00 0.00 2.87
3801 4753 2.493675 TGAAGATGGACGTCTGGAGAAG 59.506 50.000 16.46 0.00 0.00 2.85
3802 4754 1.479709 AGATGGACGTCTGGAGAAGG 58.520 55.000 16.46 0.00 0.00 3.46
3806 4758 1.258676 GGACGTCTGGAGAAGGAAGT 58.741 55.000 16.46 0.00 0.00 3.01
3828 4780 3.223661 GGCAGAACCTGACAGTCAG 57.776 57.895 22.14 22.14 43.91 3.51
3841 4793 6.927294 CTGACAGTCAGGAGTTAAAACTTT 57.073 37.500 21.46 0.00 40.71 2.66
3842 4794 7.321745 CTGACAGTCAGGAGTTAAAACTTTT 57.678 36.000 21.46 0.00 40.71 2.27
3843 4795 7.316544 TGACAGTCAGGAGTTAAAACTTTTC 57.683 36.000 0.00 0.00 39.88 2.29
3844 4796 6.036735 TGACAGTCAGGAGTTAAAACTTTTCG 59.963 38.462 0.00 0.00 39.88 3.46
3845 4797 5.205565 CAGTCAGGAGTTAAAACTTTTCGC 58.794 41.667 0.00 0.00 39.88 4.70
3846 4798 4.879545 AGTCAGGAGTTAAAACTTTTCGCA 59.120 37.500 0.00 0.00 39.88 5.10
3847 4799 5.007724 AGTCAGGAGTTAAAACTTTTCGCAG 59.992 40.000 0.00 0.00 39.88 5.18
3848 4800 4.879545 TCAGGAGTTAAAACTTTTCGCAGT 59.120 37.500 0.00 0.00 39.88 4.40
3849 4801 6.018507 GTCAGGAGTTAAAACTTTTCGCAGTA 60.019 38.462 0.00 0.00 39.88 2.74
3850 4802 6.202188 TCAGGAGTTAAAACTTTTCGCAGTAG 59.798 38.462 0.00 0.00 39.88 2.57
3851 4803 6.202188 CAGGAGTTAAAACTTTTCGCAGTAGA 59.798 38.462 0.00 0.00 39.88 2.59
3852 4804 6.424207 AGGAGTTAAAACTTTTCGCAGTAGAG 59.576 38.462 0.00 0.00 39.88 2.43
3854 4806 7.042254 GGAGTTAAAACTTTTCGCAGTAGAGAA 60.042 37.037 0.00 0.00 39.88 2.87
3855 4807 8.205131 AGTTAAAACTTTTCGCAGTAGAGAAA 57.795 30.769 0.00 0.00 40.95 2.52
3856 4808 8.121086 AGTTAAAACTTTTCGCAGTAGAGAAAC 58.879 33.333 0.00 0.00 42.09 2.78
3867 5174 5.848036 CGCAGTAGAGAAACATGAAAAACAG 59.152 40.000 0.00 0.00 0.00 3.16
3874 5181 3.457610 AACATGAAAAACAGGGTGCAG 57.542 42.857 0.00 0.00 34.35 4.41
3875 5182 2.665165 ACATGAAAAACAGGGTGCAGA 58.335 42.857 0.00 0.00 34.35 4.26
3876 5183 3.030291 ACATGAAAAACAGGGTGCAGAA 58.970 40.909 0.00 0.00 34.35 3.02
3877 5184 3.181476 ACATGAAAAACAGGGTGCAGAAC 60.181 43.478 0.00 0.00 34.35 3.01
3878 5185 2.733956 TGAAAAACAGGGTGCAGAACT 58.266 42.857 0.00 0.00 0.00 3.01
3879 5186 3.096092 TGAAAAACAGGGTGCAGAACTT 58.904 40.909 0.00 0.00 0.00 2.66
3880 5187 3.119173 TGAAAAACAGGGTGCAGAACTTG 60.119 43.478 0.00 0.00 0.00 3.16
3881 5188 2.435372 AAACAGGGTGCAGAACTTGA 57.565 45.000 0.00 0.00 0.00 3.02
3882 5189 2.435372 AACAGGGTGCAGAACTTGAA 57.565 45.000 0.00 0.00 0.00 2.69
3883 5190 2.435372 ACAGGGTGCAGAACTTGAAA 57.565 45.000 0.00 0.00 0.00 2.69
3884 5191 2.301346 ACAGGGTGCAGAACTTGAAAG 58.699 47.619 0.00 0.00 0.00 2.62
3885 5192 1.000938 CAGGGTGCAGAACTTGAAAGC 60.001 52.381 0.00 0.00 0.00 3.51
3888 5195 1.408702 GGTGCAGAACTTGAAAGCCAA 59.591 47.619 0.00 0.00 0.00 4.52
3889 5196 2.036346 GGTGCAGAACTTGAAAGCCAAT 59.964 45.455 0.00 0.00 33.68 3.16
3890 5197 3.493176 GGTGCAGAACTTGAAAGCCAATT 60.493 43.478 0.00 0.00 33.68 2.32
3891 5198 4.122046 GTGCAGAACTTGAAAGCCAATTT 58.878 39.130 0.00 0.00 33.68 1.82
3894 5201 5.927689 TGCAGAACTTGAAAGCCAATTTATG 59.072 36.000 0.00 0.00 38.70 1.90
3918 5225 3.843893 GGCCCATTCATAAGCCATTTT 57.156 42.857 0.00 0.00 45.07 1.82
3990 6806 1.977009 GGTTGGCCCTAGGTGCAAC 60.977 63.158 19.85 18.96 0.00 4.17
4046 6862 0.675633 CTGGTCCCCAACAGCAAAAG 59.324 55.000 0.00 0.00 30.80 2.27
4134 7000 2.847327 ACAGACTCCAACACCATCTG 57.153 50.000 0.00 0.00 42.07 2.90
4136 7002 2.037772 ACAGACTCCAACACCATCTGAC 59.962 50.000 6.56 0.00 39.33 3.51
4137 7003 2.037641 CAGACTCCAACACCATCTGACA 59.962 50.000 0.00 0.00 39.33 3.58
4167 7033 2.598589 CCACGGTTGCAAATCTTCATG 58.401 47.619 0.00 0.00 0.00 3.07
4172 7038 2.523015 GTTGCAAATCTTCATGGCGAG 58.477 47.619 0.00 0.00 0.00 5.03
4213 7245 0.109086 ACGTTCTGTCTCGCCATCAG 60.109 55.000 0.00 0.00 0.00 2.90
4216 7248 1.203523 GTTCTGTCTCGCCATCAGACT 59.796 52.381 3.26 0.00 40.93 3.24
4217 7249 0.813821 TCTGTCTCGCCATCAGACTG 59.186 55.000 0.00 0.00 40.93 3.51
4218 7250 0.805322 CTGTCTCGCCATCAGACTGC 60.805 60.000 0.00 0.00 40.93 4.40
4302 7334 9.191995 CAAAAACCACTAGTAAAAATGTGATCC 57.808 33.333 0.00 0.00 32.72 3.36
4389 7421 2.422276 CCTTTTTGAGCCGTGAAAGG 57.578 50.000 5.28 5.28 41.34 3.11
4412 7444 4.526650 GGTGATGTAAGGGAACAAAATGGT 59.473 41.667 0.00 0.00 32.02 3.55
4419 7451 5.385509 AAGGGAACAAAATGGTCGTATTG 57.614 39.130 0.00 0.00 34.15 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 0.035725 TAGAGAAGACGACGCCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
245 253 0.541998 TCCTTCTCCTCCTTCACGCA 60.542 55.000 0.00 0.00 0.00 5.24
281 331 0.605589 AGGAAGACCTCGCTGAACTG 59.394 55.000 0.00 0.00 44.13 3.16
293 343 0.039346 GGCCGCGACTATAGGAAGAC 60.039 60.000 8.23 0.00 0.00 3.01
348 410 9.113876 CATAAATTTCGGTGACTTAAACAGTTC 57.886 33.333 0.00 0.00 35.01 3.01
403 481 4.242475 CCCCAGAAGGCGTTTTTAATTTC 58.758 43.478 0.00 0.00 0.00 2.17
490 573 0.611200 TCGAAAAATCGCCTCCAGGA 59.389 50.000 0.00 0.00 37.39 3.86
493 576 1.024579 GGCTCGAAAAATCGCCTCCA 61.025 55.000 3.98 0.00 39.42 3.86
545 631 0.735978 CCGGAAGCCAAATTTTCGCC 60.736 55.000 0.00 0.00 0.00 5.54
546 632 0.242555 TCCGGAAGCCAAATTTTCGC 59.757 50.000 0.00 0.00 0.00 4.70
547 633 1.810151 TCTCCGGAAGCCAAATTTTCG 59.190 47.619 5.23 0.00 0.00 3.46
548 634 2.556622 TGTCTCCGGAAGCCAAATTTTC 59.443 45.455 5.23 0.00 0.00 2.29
549 635 2.593026 TGTCTCCGGAAGCCAAATTTT 58.407 42.857 5.23 0.00 0.00 1.82
550 636 2.286365 TGTCTCCGGAAGCCAAATTT 57.714 45.000 5.23 0.00 0.00 1.82
551 637 2.514458 ATGTCTCCGGAAGCCAAATT 57.486 45.000 5.23 0.00 0.00 1.82
552 638 3.054361 AGTTATGTCTCCGGAAGCCAAAT 60.054 43.478 5.23 0.00 0.00 2.32
553 639 2.304761 AGTTATGTCTCCGGAAGCCAAA 59.695 45.455 5.23 0.00 0.00 3.28
554 640 1.906574 AGTTATGTCTCCGGAAGCCAA 59.093 47.619 5.23 0.00 0.00 4.52
555 641 1.207089 CAGTTATGTCTCCGGAAGCCA 59.793 52.381 5.23 2.32 0.00 4.75
556 642 1.473434 CCAGTTATGTCTCCGGAAGCC 60.473 57.143 5.23 0.00 0.00 4.35
557 643 1.473434 CCCAGTTATGTCTCCGGAAGC 60.473 57.143 5.23 1.19 0.00 3.86
558 644 1.473434 GCCCAGTTATGTCTCCGGAAG 60.473 57.143 5.23 0.00 0.00 3.46
559 645 0.539986 GCCCAGTTATGTCTCCGGAA 59.460 55.000 5.23 0.00 0.00 4.30
560 646 1.335132 GGCCCAGTTATGTCTCCGGA 61.335 60.000 2.93 2.93 0.00 5.14
561 647 1.146263 GGCCCAGTTATGTCTCCGG 59.854 63.158 0.00 0.00 0.00 5.14
562 648 1.227263 CGGCCCAGTTATGTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
563 649 0.252197 AACGGCCCAGTTATGTCTCC 59.748 55.000 0.00 0.00 31.74 3.71
564 650 2.109425 AAACGGCCCAGTTATGTCTC 57.891 50.000 0.00 0.00 33.41 3.36
565 651 2.579410 AAAACGGCCCAGTTATGTCT 57.421 45.000 0.00 0.00 33.41 3.41
584 670 4.859798 CCATTTTTATCGCAGGCGTTAAAA 59.140 37.500 26.14 26.14 44.51 1.52
585 671 4.082679 ACCATTTTTATCGCAGGCGTTAAA 60.083 37.500 19.93 19.93 39.93 1.52
586 672 3.440872 ACCATTTTTATCGCAGGCGTTAA 59.559 39.130 13.83 12.69 40.74 2.01
587 673 3.011119 ACCATTTTTATCGCAGGCGTTA 58.989 40.909 13.83 6.96 40.74 3.18
588 674 1.816224 ACCATTTTTATCGCAGGCGTT 59.184 42.857 13.83 8.02 40.74 4.84
589 675 1.400494 GACCATTTTTATCGCAGGCGT 59.600 47.619 13.83 3.96 40.74 5.68
590 676 1.670811 AGACCATTTTTATCGCAGGCG 59.329 47.619 7.46 7.46 41.35 5.52
591 677 3.438360 CAAGACCATTTTTATCGCAGGC 58.562 45.455 0.00 0.00 0.00 4.85
592 678 3.181487 CCCAAGACCATTTTTATCGCAGG 60.181 47.826 0.00 0.00 0.00 4.85
593 679 3.694072 TCCCAAGACCATTTTTATCGCAG 59.306 43.478 0.00 0.00 0.00 5.18
594 680 3.691575 TCCCAAGACCATTTTTATCGCA 58.308 40.909 0.00 0.00 0.00 5.10
595 681 4.421058 GTTCCCAAGACCATTTTTATCGC 58.579 43.478 0.00 0.00 0.00 4.58
596 682 4.705023 AGGTTCCCAAGACCATTTTTATCG 59.295 41.667 0.00 0.00 39.71 2.92
597 683 5.714806 TCAGGTTCCCAAGACCATTTTTATC 59.285 40.000 0.00 0.00 39.71 1.75
598 684 5.650283 TCAGGTTCCCAAGACCATTTTTAT 58.350 37.500 0.00 0.00 39.71 1.40
599 685 5.068215 TCAGGTTCCCAAGACCATTTTTA 57.932 39.130 0.00 0.00 39.71 1.52
600 686 3.922375 TCAGGTTCCCAAGACCATTTTT 58.078 40.909 0.00 0.00 39.71 1.94
601 687 3.611025 TCAGGTTCCCAAGACCATTTT 57.389 42.857 0.00 0.00 39.71 1.82
602 688 3.434309 CATCAGGTTCCCAAGACCATTT 58.566 45.455 0.00 0.00 39.71 2.32
603 689 2.291800 CCATCAGGTTCCCAAGACCATT 60.292 50.000 0.00 0.00 39.71 3.16
604 690 1.285962 CCATCAGGTTCCCAAGACCAT 59.714 52.381 0.00 0.00 39.71 3.55
605 691 0.698238 CCATCAGGTTCCCAAGACCA 59.302 55.000 0.00 0.00 39.71 4.02
606 692 0.034089 CCCATCAGGTTCCCAAGACC 60.034 60.000 0.00 0.00 37.44 3.85
607 693 0.034089 CCCCATCAGGTTCCCAAGAC 60.034 60.000 0.00 0.00 0.00 3.01
608 694 1.214305 CCCCCATCAGGTTCCCAAGA 61.214 60.000 0.00 0.00 0.00 3.02
609 695 1.214305 TCCCCCATCAGGTTCCCAAG 61.214 60.000 0.00 0.00 0.00 3.61
610 696 1.151474 TCCCCCATCAGGTTCCCAA 60.151 57.895 0.00 0.00 0.00 4.12
611 697 1.619363 CTCCCCCATCAGGTTCCCA 60.619 63.158 0.00 0.00 0.00 4.37
612 698 3.061905 GCTCCCCCATCAGGTTCCC 62.062 68.421 0.00 0.00 0.00 3.97
613 699 2.597903 GCTCCCCCATCAGGTTCC 59.402 66.667 0.00 0.00 0.00 3.62
614 700 2.190578 CGCTCCCCCATCAGGTTC 59.809 66.667 0.00 0.00 0.00 3.62
615 701 3.411517 CCGCTCCCCCATCAGGTT 61.412 66.667 0.00 0.00 0.00 3.50
618 704 4.181010 CACCCGCTCCCCCATCAG 62.181 72.222 0.00 0.00 0.00 2.90
619 705 3.627332 TACACCCGCTCCCCCATCA 62.627 63.158 0.00 0.00 0.00 3.07
620 706 2.766651 TACACCCGCTCCCCCATC 60.767 66.667 0.00 0.00 0.00 3.51
621 707 2.621672 ATCTACACCCGCTCCCCCAT 62.622 60.000 0.00 0.00 0.00 4.00
622 708 3.326385 ATCTACACCCGCTCCCCCA 62.326 63.158 0.00 0.00 0.00 4.96
623 709 2.446036 ATCTACACCCGCTCCCCC 60.446 66.667 0.00 0.00 0.00 5.40
624 710 2.822399 CATCTACACCCGCTCCCC 59.178 66.667 0.00 0.00 0.00 4.81
625 711 2.109181 GCATCTACACCCGCTCCC 59.891 66.667 0.00 0.00 0.00 4.30
626 712 1.068250 GAGCATCTACACCCGCTCC 59.932 63.158 0.00 0.00 44.06 4.70
627 713 4.740235 GAGCATCTACACCCGCTC 57.260 61.111 0.00 0.00 43.60 5.03
638 724 5.175856 CCTTGTGCTTACGTATAAGAGCATC 59.824 44.000 19.50 14.22 45.69 3.91
639 725 5.050490 CCTTGTGCTTACGTATAAGAGCAT 58.950 41.667 19.50 0.00 45.69 3.79
640 726 4.081862 ACCTTGTGCTTACGTATAAGAGCA 60.082 41.667 14.16 14.16 40.38 4.26
641 727 4.267928 CACCTTGTGCTTACGTATAAGAGC 59.732 45.833 9.55 9.55 40.38 4.09
642 728 5.647589 TCACCTTGTGCTTACGTATAAGAG 58.352 41.667 2.21 0.00 39.76 2.85
643 729 5.648178 TCACCTTGTGCTTACGTATAAGA 57.352 39.130 2.21 0.00 39.76 2.10
644 730 6.273825 AGATCACCTTGTGCTTACGTATAAG 58.726 40.000 0.00 0.00 40.83 1.73
645 731 6.216801 AGATCACCTTGTGCTTACGTATAA 57.783 37.500 0.00 0.00 32.98 0.98
646 732 5.847111 AGATCACCTTGTGCTTACGTATA 57.153 39.130 0.00 0.00 32.98 1.47
647 733 4.737855 AGATCACCTTGTGCTTACGTAT 57.262 40.909 0.00 0.00 32.98 3.06
648 734 4.439700 GCTAGATCACCTTGTGCTTACGTA 60.440 45.833 0.00 0.00 32.98 3.57
649 735 3.676324 GCTAGATCACCTTGTGCTTACGT 60.676 47.826 0.00 0.00 32.98 3.57
650 736 2.860735 GCTAGATCACCTTGTGCTTACG 59.139 50.000 0.00 0.00 32.98 3.18
651 737 3.198872 GGCTAGATCACCTTGTGCTTAC 58.801 50.000 0.00 0.00 32.98 2.34
652 738 2.837591 TGGCTAGATCACCTTGTGCTTA 59.162 45.455 0.00 0.00 32.98 3.09
653 739 1.630369 TGGCTAGATCACCTTGTGCTT 59.370 47.619 0.00 0.00 32.98 3.91
654 740 1.279496 TGGCTAGATCACCTTGTGCT 58.721 50.000 0.00 0.00 32.98 4.40
655 741 2.158842 AGATGGCTAGATCACCTTGTGC 60.159 50.000 0.00 0.00 32.98 4.57
656 742 3.834489 AGATGGCTAGATCACCTTGTG 57.166 47.619 0.00 0.00 34.45 3.33
657 743 3.900601 CCTAGATGGCTAGATCACCTTGT 59.099 47.826 0.00 0.00 45.71 3.16
658 744 3.900601 ACCTAGATGGCTAGATCACCTTG 59.099 47.826 0.00 0.00 45.71 3.61
659 745 3.900601 CACCTAGATGGCTAGATCACCTT 59.099 47.826 0.00 0.00 45.71 3.50
660 746 3.141083 TCACCTAGATGGCTAGATCACCT 59.859 47.826 0.00 0.00 45.71 4.00
661 747 3.501349 TCACCTAGATGGCTAGATCACC 58.499 50.000 0.00 0.00 45.71 4.02
662 748 3.509575 CCTCACCTAGATGGCTAGATCAC 59.490 52.174 0.00 0.00 45.71 3.06
663 749 3.772387 CCTCACCTAGATGGCTAGATCA 58.228 50.000 0.00 0.00 45.71 2.92
664 750 2.495669 GCCTCACCTAGATGGCTAGATC 59.504 54.545 0.00 0.00 45.71 2.75
683 769 1.135431 TGATTTGCATTGCAGTACGCC 60.135 47.619 11.76 0.84 40.61 5.68
686 772 4.618489 GTCACTTGATTTGCATTGCAGTAC 59.382 41.667 11.76 7.60 40.61 2.73
690 776 3.181478 TGTGTCACTTGATTTGCATTGCA 60.181 39.130 7.38 7.38 36.47 4.08
745 831 0.466124 GGGGTCCTCTGTAGTCATGC 59.534 60.000 0.00 0.00 0.00 4.06
748 834 0.629596 ATCGGGGTCCTCTGTAGTCA 59.370 55.000 0.00 0.00 0.00 3.41
765 851 8.088981 AGTGTTTGACATATAAGTATCCGGATC 58.911 37.037 23.08 12.83 0.00 3.36
767 853 7.207383 CAGTGTTTGACATATAAGTATCCGGA 58.793 38.462 6.61 6.61 0.00 5.14
769 855 6.478673 TGCAGTGTTTGACATATAAGTATCCG 59.521 38.462 0.00 0.00 0.00 4.18
773 859 8.882736 CAGATTGCAGTGTTTGACATATAAGTA 58.117 33.333 0.00 0.00 0.00 2.24
774 860 7.607607 TCAGATTGCAGTGTTTGACATATAAGT 59.392 33.333 0.00 0.00 0.00 2.24
775 861 7.977904 TCAGATTGCAGTGTTTGACATATAAG 58.022 34.615 0.00 0.00 0.00 1.73
776 862 7.823799 TCTCAGATTGCAGTGTTTGACATATAA 59.176 33.333 0.00 0.00 0.00 0.98
789 875 4.965814 TCAGAAAAGTCTCAGATTGCAGT 58.034 39.130 0.00 0.00 28.78 4.40
825 913 3.010420 CTCCTTTTCTTAGAAAGGGGCG 58.990 50.000 27.85 18.47 46.98 6.13
842 930 3.768922 GCCTGCTCGCTCACTCCT 61.769 66.667 0.00 0.00 0.00 3.69
844 932 3.052620 TACGCCTGCTCGCTCACTC 62.053 63.158 0.00 0.00 0.00 3.51
845 933 3.062466 TACGCCTGCTCGCTCACT 61.062 61.111 0.00 0.00 0.00 3.41
846 934 1.989966 TAGTACGCCTGCTCGCTCAC 61.990 60.000 0.00 0.00 0.00 3.51
847 935 1.715862 CTAGTACGCCTGCTCGCTCA 61.716 60.000 0.00 0.00 0.00 4.26
848 936 1.009449 CTAGTACGCCTGCTCGCTC 60.009 63.158 0.00 0.00 0.00 5.03
849 937 0.820074 ATCTAGTACGCCTGCTCGCT 60.820 55.000 0.00 0.00 0.00 4.93
850 938 0.873054 TATCTAGTACGCCTGCTCGC 59.127 55.000 0.00 0.00 0.00 5.03
851 939 3.620929 TTTATCTAGTACGCCTGCTCG 57.379 47.619 0.00 0.00 0.00 5.03
852 940 3.675698 GCATTTATCTAGTACGCCTGCTC 59.324 47.826 0.00 0.00 0.00 4.26
853 941 3.555168 GGCATTTATCTAGTACGCCTGCT 60.555 47.826 0.00 0.00 35.17 4.24
854 942 2.737252 GGCATTTATCTAGTACGCCTGC 59.263 50.000 0.00 0.00 35.17 4.85
855 943 3.990092 TGGCATTTATCTAGTACGCCTG 58.010 45.455 0.00 0.00 38.87 4.85
856 944 3.555168 GCTGGCATTTATCTAGTACGCCT 60.555 47.826 0.00 0.00 38.87 5.52
857 945 2.737252 GCTGGCATTTATCTAGTACGCC 59.263 50.000 0.00 0.00 38.56 5.68
858 946 2.737252 GGCTGGCATTTATCTAGTACGC 59.263 50.000 0.00 0.00 0.00 4.42
859 947 3.326747 GGGCTGGCATTTATCTAGTACG 58.673 50.000 2.88 0.00 0.00 3.67
860 948 3.072476 TGGGGCTGGCATTTATCTAGTAC 59.928 47.826 2.88 0.00 0.00 2.73
861 949 3.322862 TGGGGCTGGCATTTATCTAGTA 58.677 45.455 2.88 0.00 0.00 1.82
862 950 2.107204 CTGGGGCTGGCATTTATCTAGT 59.893 50.000 2.88 0.00 0.00 2.57
863 951 2.787994 CTGGGGCTGGCATTTATCTAG 58.212 52.381 2.88 0.00 0.00 2.43
864 952 1.202927 GCTGGGGCTGGCATTTATCTA 60.203 52.381 2.88 0.00 35.22 1.98
865 953 0.468771 GCTGGGGCTGGCATTTATCT 60.469 55.000 2.88 0.00 35.22 1.98
866 954 1.799258 CGCTGGGGCTGGCATTTATC 61.799 60.000 2.88 0.00 36.09 1.75
867 955 1.829533 CGCTGGGGCTGGCATTTAT 60.830 57.895 2.88 0.00 36.09 1.40
868 956 2.440065 CGCTGGGGCTGGCATTTA 60.440 61.111 2.88 0.00 36.09 1.40
910 998 4.079958 TGGGAGATGTACTAGTAGTGCTCA 60.080 45.833 17.78 11.91 31.77 4.26
923 1021 0.613260 GTGTGGCTGTGGGAGATGTA 59.387 55.000 0.00 0.00 0.00 2.29
926 1024 1.557269 GGAGTGTGGCTGTGGGAGAT 61.557 60.000 0.00 0.00 0.00 2.75
1017 1187 3.731653 GAGAGCGGCCAGAGGAAGC 62.732 68.421 2.24 0.00 0.00 3.86
1097 1279 4.711949 CTTGCGCCCTGTGCCTCT 62.712 66.667 4.18 0.00 38.39 3.69
1206 2077 1.582968 GAGGTAGTTGTGGTCGCGA 59.417 57.895 3.71 3.71 0.00 5.87
1291 2162 5.113383 AGCAAAATCACGTACCATATTCGA 58.887 37.500 0.00 0.00 0.00 3.71
1327 2217 4.183101 ACAAATTGACCAAAACAGCACAG 58.817 39.130 0.00 0.00 0.00 3.66
1329 2219 5.810074 AGTAACAAATTGACCAAAACAGCAC 59.190 36.000 0.00 0.00 0.00 4.40
1380 2270 0.839946 ATCTATGTCGCCTTGCCCTT 59.160 50.000 0.00 0.00 0.00 3.95
1381 2271 0.839946 AATCTATGTCGCCTTGCCCT 59.160 50.000 0.00 0.00 0.00 5.19
1382 2272 1.680338 AAATCTATGTCGCCTTGCCC 58.320 50.000 0.00 0.00 0.00 5.36
1383 2273 3.877508 ACTAAAATCTATGTCGCCTTGCC 59.122 43.478 0.00 0.00 0.00 4.52
1384 2274 4.570772 TCACTAAAATCTATGTCGCCTTGC 59.429 41.667 0.00 0.00 0.00 4.01
1385 2275 5.006746 GGTCACTAAAATCTATGTCGCCTTG 59.993 44.000 0.00 0.00 0.00 3.61
1386 2276 5.104900 AGGTCACTAAAATCTATGTCGCCTT 60.105 40.000 0.00 0.00 0.00 4.35
1570 2490 2.363795 AAGACGCAGATCCGGGGA 60.364 61.111 0.00 0.00 0.00 4.81
1598 2518 1.281867 TGAAAGGATCTGCCGAACCAT 59.718 47.619 7.18 0.00 43.43 3.55
1604 2524 1.167851 TTGCTTGAAAGGATCTGCCG 58.832 50.000 0.00 0.00 43.43 5.69
1803 2723 1.959899 CTTGCTTGCTGCGGACTACG 61.960 60.000 0.00 0.00 46.63 3.51
1804 2724 1.790387 CTTGCTTGCTGCGGACTAC 59.210 57.895 0.00 0.00 46.63 2.73
1806 2726 3.360340 GCTTGCTTGCTGCGGACT 61.360 61.111 0.00 0.00 46.63 3.85
1811 2731 1.800315 CATCACGCTTGCTTGCTGC 60.800 57.895 0.00 0.00 43.25 5.25
1812 2732 1.800315 GCATCACGCTTGCTTGCTG 60.800 57.895 9.65 0.00 37.14 4.41
1813 2733 1.798234 TTGCATCACGCTTGCTTGCT 61.798 50.000 15.43 0.00 43.06 3.91
1814 2734 1.342082 CTTGCATCACGCTTGCTTGC 61.342 55.000 9.90 9.90 43.06 4.01
1815 2735 1.342082 GCTTGCATCACGCTTGCTTG 61.342 55.000 6.41 0.00 43.06 4.01
1816 2736 1.080974 GCTTGCATCACGCTTGCTT 60.081 52.632 6.41 0.00 43.06 3.91
1860 2780 4.461781 TCCTACTTGACACTAGTACAAGGC 59.538 45.833 28.93 10.68 43.28 4.35
1916 2836 4.689345 GGTCACTGGTTTGACACTGTATAC 59.311 45.833 5.67 0.00 46.68 1.47
1960 2884 7.605691 TGCCCATTTTGTATTTTTATTCACTGG 59.394 33.333 0.00 0.00 0.00 4.00
2022 2946 4.215399 TCGCCTAACATTGAAGGTGAAAAG 59.785 41.667 17.74 4.01 46.67 2.27
2120 3052 5.051153 GTCGAATTCCACTAGGATTTCTCC 58.949 45.833 13.88 0.00 45.58 3.71
2161 3093 5.174395 GTGTGGGATATGATATCTGCTGTC 58.826 45.833 11.85 0.00 0.00 3.51
2477 3424 3.985925 GCTTCTTTTCAAGCATCCACTTG 59.014 43.478 0.26 0.00 46.93 3.16
2517 3464 2.882927 AGCCGCGAGTTTATGATACA 57.117 45.000 8.23 0.00 0.00 2.29
2696 3643 0.532573 TCCAGGTGAGCAGAATCGAC 59.467 55.000 0.00 0.00 0.00 4.20
2741 3688 1.381872 TAGCCTCTCCTGCCACTCC 60.382 63.158 0.00 0.00 0.00 3.85
2772 3719 0.321653 CCCGTTCCAACTTCCCTCAG 60.322 60.000 0.00 0.00 0.00 3.35
2841 3788 8.893563 TCATTAAATCAAGATAAGGGTTGGTT 57.106 30.769 0.00 0.00 0.00 3.67
2870 3817 3.423206 GCACAAAGCAATTTCTCAAGACG 59.577 43.478 0.00 0.00 44.79 4.18
2904 3854 5.001874 AGCGTCGAATGATCCTACTGTATA 58.998 41.667 0.00 0.00 0.00 1.47
2905 3855 3.821600 AGCGTCGAATGATCCTACTGTAT 59.178 43.478 0.00 0.00 0.00 2.29
2906 3856 3.211865 AGCGTCGAATGATCCTACTGTA 58.788 45.455 0.00 0.00 0.00 2.74
2907 3857 2.025155 AGCGTCGAATGATCCTACTGT 58.975 47.619 0.00 0.00 0.00 3.55
2908 3858 2.033424 TGAGCGTCGAATGATCCTACTG 59.967 50.000 0.00 0.00 0.00 2.74
2909 3859 2.298610 TGAGCGTCGAATGATCCTACT 58.701 47.619 0.00 0.00 0.00 2.57
2910 3860 2.776312 TGAGCGTCGAATGATCCTAC 57.224 50.000 0.00 0.00 0.00 3.18
2911 3861 2.608016 GCATGAGCGTCGAATGATCCTA 60.608 50.000 0.00 0.00 0.00 2.94
2912 3862 1.871408 GCATGAGCGTCGAATGATCCT 60.871 52.381 0.00 0.00 0.00 3.24
3155 4106 2.452813 CGGGTTGAACTGATCCGCG 61.453 63.158 0.00 0.00 34.17 6.46
3175 4126 2.954868 CCCCGTTCGCGAATCTCG 60.955 66.667 26.23 22.43 44.71 4.04
3200 4151 4.966787 TGTGGAACCTTGGCCGCC 62.967 66.667 1.04 1.04 34.36 6.13
3206 4157 2.113139 AGGGCGTGTGGAACCTTG 59.887 61.111 0.00 0.00 34.36 3.61
3287 4238 1.363885 GAACCGTGGCCATTACCGAC 61.364 60.000 9.72 0.00 0.00 4.79
3290 4241 1.654023 GCAGAACCGTGGCCATTACC 61.654 60.000 9.72 0.00 0.00 2.85
3293 4244 1.973281 CTGCAGAACCGTGGCCATT 60.973 57.895 9.72 0.00 0.00 3.16
3299 4250 1.795286 GAGAACTTCTGCAGAACCGTG 59.205 52.381 25.16 17.26 0.00 4.94
3320 4271 0.323908 AGGTCGGGGAGAGAGTGAAG 60.324 60.000 0.00 0.00 0.00 3.02
3324 4275 1.224039 CGTAGGTCGGGGAGAGAGT 59.776 63.158 0.00 0.00 35.71 3.24
3460 4411 2.094854 CCAGCTCAGGCAGAAAATTCAC 60.095 50.000 0.00 0.00 41.70 3.18
3478 4429 2.216046 CACTATATGCACCACAGCCAG 58.784 52.381 0.00 0.00 0.00 4.85
3491 4442 7.872993 AGAATATTTACACTGCGTGCACTATAT 59.127 33.333 16.19 2.89 36.98 0.86
3632 4583 0.037447 AGAGAAAGGCAAGGCAGGAC 59.963 55.000 0.00 0.00 0.00 3.85
3708 4660 4.039124 GGGAATTCAAGAGTCTTTGGCAAA 59.961 41.667 12.79 12.79 0.00 3.68
3780 4732 2.215942 TCTCCAGACGTCCATCTTCA 57.784 50.000 13.01 0.00 0.00 3.02
3789 4741 2.297597 CTCAACTTCCTTCTCCAGACGT 59.702 50.000 0.00 0.00 0.00 4.34
3790 4742 2.353208 CCTCAACTTCCTTCTCCAGACG 60.353 54.545 0.00 0.00 0.00 4.18
3791 4743 2.614229 GCCTCAACTTCCTTCTCCAGAC 60.614 54.545 0.00 0.00 0.00 3.51
3792 4744 1.625818 GCCTCAACTTCCTTCTCCAGA 59.374 52.381 0.00 0.00 0.00 3.86
3793 4745 1.349026 TGCCTCAACTTCCTTCTCCAG 59.651 52.381 0.00 0.00 0.00 3.86
3794 4746 1.349026 CTGCCTCAACTTCCTTCTCCA 59.651 52.381 0.00 0.00 0.00 3.86
3795 4747 1.625818 TCTGCCTCAACTTCCTTCTCC 59.374 52.381 0.00 0.00 0.00 3.71
3796 4748 3.070748 GTTCTGCCTCAACTTCCTTCTC 58.929 50.000 0.00 0.00 0.00 2.87
3797 4749 2.224646 GGTTCTGCCTCAACTTCCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
3798 4750 2.155279 GGTTCTGCCTCAACTTCCTTC 58.845 52.381 0.00 0.00 0.00 3.46
3799 4751 1.777272 AGGTTCTGCCTCAACTTCCTT 59.223 47.619 0.00 0.00 46.96 3.36
3800 4752 1.072965 CAGGTTCTGCCTCAACTTCCT 59.927 52.381 0.00 0.00 46.96 3.36
3801 4753 1.072331 TCAGGTTCTGCCTCAACTTCC 59.928 52.381 0.00 0.00 46.96 3.46
3802 4754 2.147150 GTCAGGTTCTGCCTCAACTTC 58.853 52.381 0.00 0.00 46.96 3.01
3806 4758 1.070758 GACTGTCAGGTTCTGCCTCAA 59.929 52.381 4.53 0.00 46.96 3.02
3822 4774 5.205565 GCGAAAAGTTTTAACTCCTGACTG 58.794 41.667 0.00 0.00 38.57 3.51
3828 4780 6.423001 TCTCTACTGCGAAAAGTTTTAACTCC 59.577 38.462 0.00 0.00 38.57 3.85
3829 4781 7.404139 TCTCTACTGCGAAAAGTTTTAACTC 57.596 36.000 0.00 0.00 38.57 3.01
3831 4783 7.906527 TGTTTCTCTACTGCGAAAAGTTTTAAC 59.093 33.333 0.00 0.00 30.06 2.01
3832 4784 7.976826 TGTTTCTCTACTGCGAAAAGTTTTAA 58.023 30.769 0.00 0.00 30.06 1.52
3833 4785 7.542534 TGTTTCTCTACTGCGAAAAGTTTTA 57.457 32.000 0.00 0.00 30.06 1.52
3834 4786 6.431198 TGTTTCTCTACTGCGAAAAGTTTT 57.569 33.333 0.00 0.00 30.06 2.43
3836 4788 5.758296 TCATGTTTCTCTACTGCGAAAAGTT 59.242 36.000 0.00 0.00 30.06 2.66
3837 4789 5.297547 TCATGTTTCTCTACTGCGAAAAGT 58.702 37.500 0.00 0.00 30.06 2.66
3839 4791 6.612247 TTTCATGTTTCTCTACTGCGAAAA 57.388 33.333 0.00 0.00 30.06 2.29
3840 4792 6.612247 TTTTCATGTTTCTCTACTGCGAAA 57.388 33.333 0.00 0.00 0.00 3.46
3841 4793 6.037720 TGTTTTTCATGTTTCTCTACTGCGAA 59.962 34.615 0.00 0.00 0.00 4.70
3842 4794 5.525745 TGTTTTTCATGTTTCTCTACTGCGA 59.474 36.000 0.00 0.00 0.00 5.10
3843 4795 5.747565 TGTTTTTCATGTTTCTCTACTGCG 58.252 37.500 0.00 0.00 0.00 5.18
3844 4796 6.145535 CCTGTTTTTCATGTTTCTCTACTGC 58.854 40.000 0.00 0.00 0.00 4.40
3845 4797 6.263168 ACCCTGTTTTTCATGTTTCTCTACTG 59.737 38.462 0.00 0.00 0.00 2.74
3846 4798 6.263168 CACCCTGTTTTTCATGTTTCTCTACT 59.737 38.462 0.00 0.00 0.00 2.57
3847 4799 6.438763 CACCCTGTTTTTCATGTTTCTCTAC 58.561 40.000 0.00 0.00 0.00 2.59
3848 4800 5.009610 GCACCCTGTTTTTCATGTTTCTCTA 59.990 40.000 0.00 0.00 0.00 2.43
3849 4801 4.202151 GCACCCTGTTTTTCATGTTTCTCT 60.202 41.667 0.00 0.00 0.00 3.10
3850 4802 4.051237 GCACCCTGTTTTTCATGTTTCTC 58.949 43.478 0.00 0.00 0.00 2.87
3851 4803 3.450457 TGCACCCTGTTTTTCATGTTTCT 59.550 39.130 0.00 0.00 0.00 2.52
3852 4804 3.791245 TGCACCCTGTTTTTCATGTTTC 58.209 40.909 0.00 0.00 0.00 2.78
3854 4806 3.030291 TCTGCACCCTGTTTTTCATGTT 58.970 40.909 0.00 0.00 0.00 2.71
3855 4807 2.665165 TCTGCACCCTGTTTTTCATGT 58.335 42.857 0.00 0.00 0.00 3.21
3856 4808 3.068590 AGTTCTGCACCCTGTTTTTCATG 59.931 43.478 0.00 0.00 0.00 3.07
3867 5174 0.315251 GGCTTTCAAGTTCTGCACCC 59.685 55.000 0.00 0.00 0.00 4.61
3894 5201 0.752658 GGCTTATGAATGGGCCAACC 59.247 55.000 11.89 5.87 43.59 3.77
3898 5205 3.494924 GGAAAATGGCTTATGAATGGGCC 60.495 47.826 0.00 0.00 44.31 5.80
3899 5206 3.494924 GGGAAAATGGCTTATGAATGGGC 60.495 47.826 0.00 0.00 0.00 5.36
3902 5209 4.696455 GTGGGGAAAATGGCTTATGAATG 58.304 43.478 0.00 0.00 0.00 2.67
3906 5213 1.202405 GCGTGGGGAAAATGGCTTATG 60.202 52.381 0.00 0.00 0.00 1.90
3982 6798 0.181114 TGCAGTCTTCTGTTGCACCT 59.819 50.000 0.00 0.00 42.41 4.00
3990 6806 0.737715 GCCGTACCTGCAGTCTTCTG 60.738 60.000 13.81 0.00 43.87 3.02
4134 7000 2.022129 CCGTGGCTCGACAACTGTC 61.022 63.158 10.96 0.00 42.86 3.51
4136 7002 1.594293 AACCGTGGCTCGACAACTG 60.594 57.895 10.96 0.00 42.86 3.16
4137 7003 1.594293 CAACCGTGGCTCGACAACT 60.594 57.895 10.96 0.00 42.86 3.16
4172 7038 0.940126 CAATCACCTGATGGCGCTAC 59.060 55.000 7.64 0.00 34.49 3.58
4213 7245 4.521062 AGCTCGCCATCCGCAGTC 62.521 66.667 0.00 0.00 37.30 3.51
4216 7248 4.081185 TTCAGCTCGCCATCCGCA 62.081 61.111 0.00 0.00 37.30 5.69
4217 7249 3.567797 GTTCAGCTCGCCATCCGC 61.568 66.667 0.00 0.00 36.73 5.54
4218 7250 1.880340 GAGTTCAGCTCGCCATCCG 60.880 63.158 0.00 0.00 34.13 4.18
4282 7314 5.424757 TCGGGATCACATTTTTACTAGTGG 58.575 41.667 5.39 0.00 33.01 4.00
4302 7334 4.498850 CCACTCTCTATTGTGTCTGATCGG 60.499 50.000 0.00 0.00 32.76 4.18
4389 7421 4.526650 ACCATTTTGTTCCCTTACATCACC 59.473 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.