Multiple sequence alignment - TraesCS2D01G127500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G127500 chr2D 100.000 4618 0 0 1 4618 74127976 74132593 0.000000e+00 8528.0
1 TraesCS2D01G127500 chr2D 90.355 197 12 5 691 880 20189492 20189296 7.670000e-63 252.0
2 TraesCS2D01G127500 chr2D 89.552 201 13 6 691 884 3217324 3217523 9.920000e-62 248.0
3 TraesCS2D01G127500 chr2D 89.604 202 12 8 677 871 516411011 516410812 9.920000e-62 248.0
4 TraesCS2D01G127500 chr2B 92.981 2949 106 49 869 3768 113262689 113265585 0.000000e+00 4205.0
5 TraesCS2D01G127500 chr2B 92.202 436 25 2 83 509 113175081 113175516 3.950000e-170 608.0
6 TraesCS2D01G127500 chr2B 80.615 325 40 17 4300 4607 313530398 313530716 3.590000e-56 230.0
7 TraesCS2D01G127500 chr2B 96.703 91 3 0 1 91 113174959 113175049 8.000000e-33 152.0
8 TraesCS2D01G127500 chr2B 82.500 120 18 2 1323 1442 770647512 770647628 8.170000e-18 102.0
9 TraesCS2D01G127500 chr2B 93.182 44 3 0 652 695 113262572 113262615 1.070000e-06 65.8
10 TraesCS2D01G127500 chr2A 95.040 2480 88 12 1717 4189 73521644 73524095 0.000000e+00 3866.0
11 TraesCS2D01G127500 chr2A 94.015 518 22 2 1 509 73520085 73520602 0.000000e+00 776.0
12 TraesCS2D01G127500 chr2A 87.874 602 28 17 869 1440 73521037 73521623 0.000000e+00 665.0
13 TraesCS2D01G127500 chr2A 85.714 196 11 8 508 694 73520853 73521040 1.700000e-44 191.0
14 TraesCS2D01G127500 chr6A 77.152 604 85 39 993 1558 9317018 9317606 7.510000e-78 302.0
15 TraesCS2D01G127500 chr6A 75.648 386 66 16 2833 3196 9318982 9319361 2.860000e-37 167.0
16 TraesCS2D01G127500 chr6A 100.000 31 0 0 1589 1619 158907242 158907212 1.790000e-04 58.4
17 TraesCS2D01G127500 chr6D 76.519 609 94 36 993 1558 8673890 8673288 2.100000e-73 287.0
18 TraesCS2D01G127500 chr6D 91.146 192 9 7 689 873 284659554 284659744 2.130000e-63 254.0
19 TraesCS2D01G127500 chr6D 83.871 217 29 3 2155 2366 8672792 8672577 7.830000e-48 202.0
20 TraesCS2D01G127500 chr6D 77.165 254 38 10 3380 3629 8671442 8671205 3.750000e-26 130.0
21 TraesCS2D01G127500 chr6D 100.000 31 0 0 1589 1619 120648435 120648405 1.790000e-04 58.4
22 TraesCS2D01G127500 chr6B 78.407 477 66 22 993 1442 15793346 15792880 4.550000e-70 276.0
23 TraesCS2D01G127500 chr6B 83.871 217 29 4 2155 2366 15792253 15792038 7.830000e-48 202.0
24 TraesCS2D01G127500 chr6B 91.111 135 12 0 4476 4610 52088866 52089000 2.840000e-42 183.0
25 TraesCS2D01G127500 chr6B 93.243 74 5 0 3380 3453 15790656 15790583 4.880000e-20 110.0
26 TraesCS2D01G127500 chr6B 100.000 31 0 0 1589 1619 212629323 212629353 1.790000e-04 58.4
27 TraesCS2D01G127500 chr4A 91.667 192 10 6 691 876 41397803 41397994 1.270000e-65 261.0
28 TraesCS2D01G127500 chr4A 83.636 110 16 1 1333 1442 208829349 208829242 8.170000e-18 102.0
29 TraesCS2D01G127500 chr5D 92.857 182 7 5 693 868 356191994 356192175 4.580000e-65 259.0
30 TraesCS2D01G127500 chr3D 91.979 187 10 4 688 869 23551316 23551502 1.650000e-64 257.0
31 TraesCS2D01G127500 chr3D 88.514 148 17 0 4471 4618 253833361 253833508 3.670000e-41 180.0
32 TraesCS2D01G127500 chr3D 85.119 168 21 3 4453 4618 398464521 398464356 7.950000e-38 169.0
33 TraesCS2D01G127500 chr3D 90.698 43 0 2 453 495 352979611 352979649 2.000000e-03 54.7
34 TraesCS2D01G127500 chr1D 91.579 190 9 6 689 871 93501171 93500982 5.930000e-64 255.0
35 TraesCS2D01G127500 chr1D 94.444 54 2 1 1589 1641 316619668 316619721 1.060000e-11 82.4
36 TraesCS2D01G127500 chr7B 90.722 194 10 7 691 876 727390804 727390997 7.670000e-63 252.0
37 TraesCS2D01G127500 chr7B 83.193 119 17 2 1324 1442 746100275 746100160 6.320000e-19 106.0
38 TraesCS2D01G127500 chr1A 94.040 151 9 0 4467 4617 533217296 533217446 3.590000e-56 230.0
39 TraesCS2D01G127500 chr1A 86.905 84 6 2 1589 1671 397738725 397738804 6.360000e-14 89.8
40 TraesCS2D01G127500 chr5A 93.243 148 10 0 4471 4618 248527162 248527015 7.780000e-53 219.0
41 TraesCS2D01G127500 chr5A 100.000 30 0 0 1589 1618 403290734 403290705 6.450000e-04 56.5
42 TraesCS2D01G127500 chrUn 91.608 143 11 1 4476 4618 318027301 318027160 3.650000e-46 196.0
43 TraesCS2D01G127500 chrUn 91.608 143 11 1 4476 4618 463550685 463550826 3.650000e-46 196.0
44 TraesCS2D01G127500 chr5B 90.000 140 14 0 4471 4610 193368267 193368406 1.020000e-41 182.0
45 TraesCS2D01G127500 chr3B 83.478 115 16 2 1328 1442 458331539 458331428 2.270000e-18 104.0
46 TraesCS2D01G127500 chr1B 84.337 83 8 5 1589 1671 4516671 4516594 4.950000e-10 76.8
47 TraesCS2D01G127500 chr1B 97.727 44 1 0 1589 1632 428723268 428723311 4.950000e-10 76.8
48 TraesCS2D01G127500 chr7D 100.000 29 0 0 4061 4089 50741775 50741803 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G127500 chr2D 74127976 74132593 4617 False 8528.000000 8528 100.00000 1 4618 1 chr2D.!!$F2 4617
1 TraesCS2D01G127500 chr2B 113262572 113265585 3013 False 2135.400000 4205 93.08150 652 3768 2 chr2B.!!$F4 3116
2 TraesCS2D01G127500 chr2B 113174959 113175516 557 False 380.000000 608 94.45250 1 509 2 chr2B.!!$F3 508
3 TraesCS2D01G127500 chr2A 73520085 73524095 4010 False 1374.500000 3866 90.66075 1 4189 4 chr2A.!!$F1 4188
4 TraesCS2D01G127500 chr6A 9317018 9319361 2343 False 234.500000 302 76.40000 993 3196 2 chr6A.!!$F1 2203
5 TraesCS2D01G127500 chr6D 8671205 8673890 2685 True 206.333333 287 79.18500 993 3629 3 chr6D.!!$R2 2636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 1012 0.604511 CGCGAAGTAAGGGGGTGTTT 60.605 55.000 0.0 0.0 0.00 2.83 F
864 1174 0.668535 AAAAGTCGCTGAACCAAGCC 59.331 50.000 0.0 0.0 40.23 4.35 F
876 1264 0.774491 ACCAAGCCCCCTAAGTTCCA 60.774 55.000 0.0 0.0 0.00 3.53 F
2443 3001 1.734465 GGAAGCAGATCAGAACGGTTG 59.266 52.381 0.0 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2393 0.379669 ACGCATGCTAGCATCAAAGC 59.620 50.000 27.34 24.09 39.25 3.51 R
2443 3001 1.476891 TGCCACGGAGAATACTGAGTC 59.523 52.381 0.00 0.00 0.00 3.36 R
2459 3017 1.500474 CCACTAGAAGATCCCTGCCA 58.500 55.000 0.00 0.00 0.00 4.92 R
4221 5067 0.108138 CCTAGGACAAAGGCAGACGG 60.108 60.000 1.05 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 237 7.957002 TGTTTCCATTATGTTTTGCTTCCTTA 58.043 30.769 0.00 0.00 0.00 2.69
226 267 1.671979 CAAGGTGGCGATGATGATGT 58.328 50.000 0.00 0.00 0.00 3.06
246 287 3.039011 GTGCTAGAATAAGGTCCCTCCA 58.961 50.000 0.00 0.00 39.02 3.86
248 289 2.635427 GCTAGAATAAGGTCCCTCCAGG 59.365 54.545 0.00 0.00 39.02 4.45
284 325 1.524008 TATGTCGATCCGGCGCTGAT 61.524 55.000 20.25 15.31 32.50 2.90
337 378 1.603172 GCTTCACTGACGATATCGGGG 60.603 57.143 27.58 18.33 44.95 5.73
346 387 1.371558 GATATCGGGGAGGTGGTGC 59.628 63.158 0.00 0.00 0.00 5.01
382 423 2.844348 TGGAATAAGGTCTCTCCAACCC 59.156 50.000 0.00 0.00 37.52 4.11
440 481 0.766674 TGGCTTGTGAGTGTAGGGGT 60.767 55.000 0.00 0.00 0.00 4.95
491 541 8.037758 AGTTGGTGTATCAATCAAGAGAAGTAG 58.962 37.037 0.00 0.00 0.00 2.57
492 542 7.482169 TGGTGTATCAATCAAGAGAAGTAGT 57.518 36.000 0.00 0.00 0.00 2.73
497 547 8.035394 TGTATCAATCAAGAGAAGTAGTTGTCC 58.965 37.037 3.90 0.00 0.00 4.02
513 815 4.326766 CCGGCGTTTGGTGCACAG 62.327 66.667 20.43 5.21 0.00 3.66
522 824 2.355837 GGTGCACAGTCGAGCGAA 60.356 61.111 20.43 0.00 0.00 4.70
577 882 9.775854 TTTTATTTGTTGGTGATCATTTGATGT 57.224 25.926 0.00 0.00 34.37 3.06
578 883 8.984891 TTATTTGTTGGTGATCATTTGATGTC 57.015 30.769 0.00 0.00 34.37 3.06
589 894 7.536622 GTGATCATTTGATGTCTTGTTGTCTTC 59.463 37.037 0.00 0.00 34.37 2.87
601 906 7.916977 TGTCTTGTTGTCTTCTCATTTTCATTG 59.083 33.333 0.00 0.00 0.00 2.82
603 908 9.119418 TCTTGTTGTCTTCTCATTTTCATTGTA 57.881 29.630 0.00 0.00 0.00 2.41
609 919 8.677300 TGTCTTCTCATTTTCATTGTATTAGCC 58.323 33.333 0.00 0.00 0.00 3.93
626 936 9.699703 TGTATTAGCCTTTTGTTTTCAATAACC 57.300 29.630 0.00 0.00 39.70 2.85
648 958 8.671987 AACCATATACTCCAGTTATAGATGCT 57.328 34.615 0.00 0.00 0.00 3.79
649 959 8.671987 ACCATATACTCCAGTTATAGATGCTT 57.328 34.615 0.00 0.00 0.00 3.91
650 960 8.754080 ACCATATACTCCAGTTATAGATGCTTC 58.246 37.037 0.00 0.00 0.00 3.86
684 994 3.430862 CCCATGTGCACCCGAACG 61.431 66.667 15.69 0.00 0.00 3.95
686 996 4.444024 CATGTGCACCCGAACGCG 62.444 66.667 15.69 3.53 37.24 6.01
689 999 4.072088 GTGCACCCGAACGCGAAG 62.072 66.667 15.93 2.74 40.82 3.79
690 1000 4.595538 TGCACCCGAACGCGAAGT 62.596 61.111 15.93 0.00 40.82 3.01
691 1001 2.431260 GCACCCGAACGCGAAGTA 60.431 61.111 15.93 0.00 40.82 2.24
692 1002 2.023223 GCACCCGAACGCGAAGTAA 61.023 57.895 15.93 0.00 40.82 2.24
693 1003 1.952266 GCACCCGAACGCGAAGTAAG 61.952 60.000 15.93 0.00 40.82 2.34
694 1004 1.080298 ACCCGAACGCGAAGTAAGG 60.080 57.895 15.93 8.16 40.82 2.69
695 1005 1.808390 CCCGAACGCGAAGTAAGGG 60.808 63.158 15.93 12.63 41.23 3.95
696 1006 1.808390 CCGAACGCGAAGTAAGGGG 60.808 63.158 15.93 0.00 40.82 4.79
697 1007 1.808390 CGAACGCGAAGTAAGGGGG 60.808 63.158 15.93 0.00 40.82 5.40
698 1008 1.294459 GAACGCGAAGTAAGGGGGT 59.706 57.895 15.93 0.00 0.00 4.95
699 1009 1.004200 AACGCGAAGTAAGGGGGTG 60.004 57.895 15.93 0.00 0.00 4.61
700 1010 1.761500 AACGCGAAGTAAGGGGGTGT 61.761 55.000 15.93 0.00 0.00 4.16
701 1011 1.004200 CGCGAAGTAAGGGGGTGTT 60.004 57.895 0.00 0.00 0.00 3.32
702 1012 0.604511 CGCGAAGTAAGGGGGTGTTT 60.605 55.000 0.00 0.00 0.00 2.83
703 1013 0.879090 GCGAAGTAAGGGGGTGTTTG 59.121 55.000 0.00 0.00 0.00 2.93
704 1014 1.530323 CGAAGTAAGGGGGTGTTTGG 58.470 55.000 0.00 0.00 0.00 3.28
705 1015 1.202842 CGAAGTAAGGGGGTGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
706 1016 2.750471 CGAAGTAAGGGGGTGTTTGGTT 60.750 50.000 0.00 0.00 0.00 3.67
707 1017 2.670019 AGTAAGGGGGTGTTTGGTTC 57.330 50.000 0.00 0.00 0.00 3.62
708 1018 1.854280 AGTAAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
709 1019 2.158519 AGTAAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
710 1020 0.930726 AAGGGGGTGTTTGGTTCAGA 59.069 50.000 0.00 0.00 0.00 3.27
711 1021 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
712 1022 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
713 1023 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
714 1024 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
715 1025 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
716 1026 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
717 1027 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
718 1028 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
719 1029 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
720 1030 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
721 1031 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
796 1106 7.613551 TTCTAGTCCTGTAGAAAAAGTTCCT 57.386 36.000 0.00 0.00 36.33 3.36
797 1107 7.613551 TCTAGTCCTGTAGAAAAAGTTCCTT 57.386 36.000 0.00 0.00 33.92 3.36
798 1108 7.668492 TCTAGTCCTGTAGAAAAAGTTCCTTC 58.332 38.462 0.00 0.00 33.92 3.46
799 1109 5.622180 AGTCCTGTAGAAAAAGTTCCTTCC 58.378 41.667 0.00 0.00 33.92 3.46
800 1110 4.451435 GTCCTGTAGAAAAAGTTCCTTCCG 59.549 45.833 0.00 0.00 33.92 4.30
801 1111 4.102054 TCCTGTAGAAAAAGTTCCTTCCGT 59.898 41.667 0.00 0.00 33.92 4.69
802 1112 4.820173 CCTGTAGAAAAAGTTCCTTCCGTT 59.180 41.667 0.00 0.00 33.92 4.44
803 1113 5.298527 CCTGTAGAAAAAGTTCCTTCCGTTT 59.701 40.000 0.00 0.00 33.92 3.60
804 1114 6.126568 TGTAGAAAAAGTTCCTTCCGTTTG 57.873 37.500 0.00 0.00 33.92 2.93
805 1115 4.649088 AGAAAAAGTTCCTTCCGTTTGG 57.351 40.909 0.00 0.00 33.92 3.28
806 1116 4.021229 AGAAAAAGTTCCTTCCGTTTGGT 58.979 39.130 0.00 0.00 33.92 3.67
807 1117 4.464951 AGAAAAAGTTCCTTCCGTTTGGTT 59.535 37.500 0.00 0.00 33.92 3.67
808 1118 4.380841 AAAAGTTCCTTCCGTTTGGTTC 57.619 40.909 0.00 0.00 36.30 3.62
809 1119 1.977056 AGTTCCTTCCGTTTGGTTCC 58.023 50.000 0.00 0.00 36.30 3.62
810 1120 1.493446 AGTTCCTTCCGTTTGGTTCCT 59.507 47.619 0.00 0.00 36.30 3.36
811 1121 2.707257 AGTTCCTTCCGTTTGGTTCCTA 59.293 45.455 0.00 0.00 36.30 2.94
812 1122 3.072211 GTTCCTTCCGTTTGGTTCCTAG 58.928 50.000 0.00 0.00 36.30 3.02
813 1123 1.626825 TCCTTCCGTTTGGTTCCTAGG 59.373 52.381 0.82 0.82 36.30 3.02
814 1124 1.339727 CCTTCCGTTTGGTTCCTAGGG 60.340 57.143 9.46 0.00 36.30 3.53
815 1125 1.626825 CTTCCGTTTGGTTCCTAGGGA 59.373 52.381 9.46 0.00 36.30 4.20
816 1126 0.978907 TCCGTTTGGTTCCTAGGGAC 59.021 55.000 12.35 12.35 36.30 4.46
817 1127 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
818 1128 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
819 1129 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
820 1130 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
821 1131 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
822 1132 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
823 1133 5.180680 CGTTTGGTTCCTAGGGACTTTTTAG 59.819 44.000 20.08 4.22 41.75 1.85
824 1134 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
825 1135 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
826 1136 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
827 1137 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
828 1138 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
829 1139 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
830 1140 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
831 1141 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
832 1142 6.793988 TCCTAGGGACTTTTTAGGGACTTTTA 59.206 38.462 9.46 0.00 39.49 1.52
833 1143 7.463295 TCCTAGGGACTTTTTAGGGACTTTTAT 59.537 37.037 9.46 0.00 39.49 1.40
834 1144 8.114102 CCTAGGGACTTTTTAGGGACTTTTATT 58.886 37.037 0.00 0.00 39.49 1.40
835 1145 9.529823 CTAGGGACTTTTTAGGGACTTTTATTT 57.470 33.333 0.00 0.00 39.49 1.40
836 1146 8.792830 AGGGACTTTTTAGGGACTTTTATTTT 57.207 30.769 0.00 0.00 34.75 1.82
837 1147 8.867097 AGGGACTTTTTAGGGACTTTTATTTTC 58.133 33.333 0.00 0.00 34.75 2.29
838 1148 7.811236 GGGACTTTTTAGGGACTTTTATTTTCG 59.189 37.037 0.00 0.00 41.75 3.46
839 1149 7.811236 GGACTTTTTAGGGACTTTTATTTTCGG 59.189 37.037 0.00 0.00 41.75 4.30
840 1150 7.663827 ACTTTTTAGGGACTTTTATTTTCGGG 58.336 34.615 0.00 0.00 41.75 5.14
841 1151 7.506599 ACTTTTTAGGGACTTTTATTTTCGGGA 59.493 33.333 0.00 0.00 41.75 5.14
842 1152 6.822667 TTTAGGGACTTTTATTTTCGGGAC 57.177 37.500 0.00 0.00 41.75 4.46
843 1153 4.652679 AGGGACTTTTATTTTCGGGACT 57.347 40.909 0.00 0.00 27.25 3.85
844 1154 5.767277 AGGGACTTTTATTTTCGGGACTA 57.233 39.130 0.00 0.00 27.25 2.59
845 1155 6.130692 AGGGACTTTTATTTTCGGGACTAA 57.869 37.500 0.00 0.00 27.25 2.24
846 1156 6.545567 AGGGACTTTTATTTTCGGGACTAAA 58.454 36.000 0.00 0.00 27.25 1.85
847 1157 7.005902 AGGGACTTTTATTTTCGGGACTAAAA 58.994 34.615 0.00 0.00 33.83 1.52
848 1158 7.506599 AGGGACTTTTATTTTCGGGACTAAAAA 59.493 33.333 0.00 0.00 33.19 1.94
849 1159 7.811236 GGGACTTTTATTTTCGGGACTAAAAAG 59.189 37.037 0.00 0.00 36.61 2.27
850 1160 8.355169 GGACTTTTATTTTCGGGACTAAAAAGT 58.645 33.333 9.35 9.35 44.15 2.66
851 1161 9.390795 GACTTTTATTTTCGGGACTAAAAAGTC 57.609 33.333 17.07 17.07 46.44 3.01
852 1162 8.071967 ACTTTTATTTTCGGGACTAAAAAGTCG 58.928 33.333 0.00 0.00 39.98 4.18
853 1163 3.883631 TTTTCGGGACTAAAAAGTCGC 57.116 42.857 11.37 11.37 44.86 5.19
854 1164 2.825861 TTCGGGACTAAAAAGTCGCT 57.174 45.000 17.14 0.00 45.73 4.93
855 1165 2.074547 TCGGGACTAAAAAGTCGCTG 57.925 50.000 17.14 12.01 45.73 5.18
856 1166 1.614903 TCGGGACTAAAAAGTCGCTGA 59.385 47.619 17.14 13.58 45.73 4.26
857 1167 2.036217 TCGGGACTAAAAAGTCGCTGAA 59.964 45.455 17.14 4.00 45.73 3.02
858 1168 2.157085 CGGGACTAAAAAGTCGCTGAAC 59.843 50.000 17.14 0.00 45.73 3.18
859 1169 2.483106 GGGACTAAAAAGTCGCTGAACC 59.517 50.000 13.50 0.00 44.88 3.62
860 1170 3.135994 GGACTAAAAAGTCGCTGAACCA 58.864 45.455 0.00 0.00 39.57 3.67
861 1171 3.562557 GGACTAAAAAGTCGCTGAACCAA 59.437 43.478 0.00 0.00 39.57 3.67
862 1172 4.319549 GGACTAAAAAGTCGCTGAACCAAG 60.320 45.833 0.00 0.00 39.57 3.61
863 1173 2.492019 AAAAAGTCGCTGAACCAAGC 57.508 45.000 0.00 0.00 39.94 4.01
864 1174 0.668535 AAAAGTCGCTGAACCAAGCC 59.331 50.000 0.00 0.00 40.23 4.35
865 1175 1.172812 AAAGTCGCTGAACCAAGCCC 61.173 55.000 0.00 0.00 40.23 5.19
866 1176 3.056328 GTCGCTGAACCAAGCCCC 61.056 66.667 0.00 0.00 40.23 5.80
867 1177 4.344865 TCGCTGAACCAAGCCCCC 62.345 66.667 0.00 0.00 40.23 5.40
876 1264 0.774491 ACCAAGCCCCCTAAGTTCCA 60.774 55.000 0.00 0.00 0.00 3.53
1043 1431 2.506217 CACCGTGCGCGTCTACAT 60.506 61.111 19.61 0.00 36.15 2.29
1235 1646 2.432628 GCACCCTGTTCTCGTCGG 60.433 66.667 0.00 0.00 0.00 4.79
1283 1700 5.245531 TCAGCGACCTGAATTCACTTATTT 58.754 37.500 3.38 0.00 44.79 1.40
1489 1978 4.365514 TTTGCTCCTCTGTGGTGAATAA 57.634 40.909 2.28 0.00 37.07 1.40
1559 2049 2.110578 GGGCATGGTTTATTTGCTCCT 58.889 47.619 0.00 0.00 36.62 3.69
1560 2050 3.295973 GGGCATGGTTTATTTGCTCCTA 58.704 45.455 0.00 0.00 36.62 2.94
1561 2051 3.704061 GGGCATGGTTTATTTGCTCCTAA 59.296 43.478 0.00 0.00 36.62 2.69
1562 2052 4.161377 GGGCATGGTTTATTTGCTCCTAAA 59.839 41.667 0.00 0.00 36.62 1.85
1647 2138 6.561945 TCAAATTGAACTGCAAAAACGTAC 57.438 33.333 0.00 0.00 40.48 3.67
1648 2139 5.228220 TCAAATTGAACTGCAAAAACGTACG 59.772 36.000 15.01 15.01 40.48 3.67
1649 2140 3.743567 TTGAACTGCAAAAACGTACGT 57.256 38.095 16.72 16.72 32.46 3.57
1667 2158 6.479001 ACGTACGTCTTATATTAGTGTACGGT 59.521 38.462 29.65 21.02 45.05 4.83
1685 2176 5.751243 ACGGTGGTTGCATTATTTATCTC 57.249 39.130 0.00 0.00 0.00 2.75
1719 2218 8.552034 GGCAGTAATGTTTCTGAATATGTACTC 58.448 37.037 3.90 0.00 34.02 2.59
1730 2229 9.817809 TTCTGAATATGTACTCAAGGATGTAAC 57.182 33.333 0.00 0.00 0.00 2.50
1907 2406 7.319646 AGATACTAGTATGCTTTGATGCTAGC 58.680 38.462 20.13 8.10 40.47 3.42
2038 2543 2.185004 TCAGTCTTTGGCACTTAGGC 57.815 50.000 0.00 0.00 44.50 3.93
2148 2657 2.418368 TTGAGGAATTGGCGCTGTAT 57.582 45.000 7.64 0.00 0.00 2.29
2169 2678 7.946207 TGTATTTTACTCATTTTGCAGGTTCA 58.054 30.769 0.00 0.00 0.00 3.18
2211 2720 2.159382 CTGTATTTCTTGGCAACCGGT 58.841 47.619 0.00 0.00 0.00 5.28
2291 2800 2.966516 AGTCAGGAGAAACGAAGTCCTT 59.033 45.455 0.00 0.00 45.00 3.36
2443 3001 1.734465 GGAAGCAGATCAGAACGGTTG 59.266 52.381 0.00 0.00 0.00 3.77
2459 3017 2.163815 CGGTTGACTCAGTATTCTCCGT 59.836 50.000 0.00 0.00 0.00 4.69
2552 3110 6.422776 TGTCATTTCTTTCCGCTCTTTATC 57.577 37.500 0.00 0.00 0.00 1.75
2566 3124 4.728021 GCTCTTTATCTAGTTTTGCGGTGC 60.728 45.833 0.00 0.00 0.00 5.01
2797 3608 8.561738 TCTTATTTTGTCTGAGGATTTGTACC 57.438 34.615 0.00 0.00 0.00 3.34
3200 4029 1.027792 GGCGAGGGCAAAATCCGTAA 61.028 55.000 0.00 0.00 42.47 3.18
3201 4030 0.098200 GCGAGGGCAAAATCCGTAAC 59.902 55.000 0.00 0.00 39.62 2.50
3202 4031 1.734163 CGAGGGCAAAATCCGTAACT 58.266 50.000 0.00 0.00 0.00 2.24
3676 4521 2.637872 TGGCTTACTCCACTTTGTAGCT 59.362 45.455 0.00 0.00 0.00 3.32
3681 4526 3.470645 ACTCCACTTTGTAGCTTTCGT 57.529 42.857 0.00 0.00 0.00 3.85
3849 4694 5.268118 AGAAAGAAAAGGCCACTGAAAAG 57.732 39.130 5.01 0.00 0.00 2.27
3900 4746 5.278463 GGAAATACTCACAAAGCAGAAGCAA 60.278 40.000 0.00 0.00 45.49 3.91
3923 4769 2.356135 TCTTTTTATCGCTGGAGGCAC 58.644 47.619 0.00 0.00 41.91 5.01
3939 4785 4.163552 GAGGCACGCTAAACCAAATTAAC 58.836 43.478 0.00 0.00 0.00 2.01
3940 4786 3.824443 AGGCACGCTAAACCAAATTAACT 59.176 39.130 0.00 0.00 0.00 2.24
3946 4792 7.464844 GCACGCTAAACCAAATTAACTTTTGTT 60.465 33.333 1.90 0.00 45.76 2.83
3965 4811 7.452880 TTTGTTATTCAGTTTCATCCTGGAG 57.547 36.000 1.52 0.00 0.00 3.86
3975 4821 6.656693 CAGTTTCATCCTGGAGTAGAAACAAT 59.343 38.462 31.48 20.34 46.28 2.71
3976 4822 6.656693 AGTTTCATCCTGGAGTAGAAACAATG 59.343 38.462 31.48 14.14 46.28 2.82
4019 4865 8.704849 TTCCAAAATGGTTTTCTCTAGAATGA 57.295 30.769 0.00 0.00 39.03 2.57
4043 4889 1.537397 AACAGAGAGGGGCTCAGCA 60.537 57.895 0.00 0.00 46.45 4.41
4046 4892 1.229464 AGAGAGGGGCTCAGCACTT 60.229 57.895 0.00 0.00 46.45 3.16
4047 4893 1.078567 GAGAGGGGCTCAGCACTTG 60.079 63.158 0.00 0.00 43.38 3.16
4104 4950 1.614824 CTGCCCCTTCACCTCCTCT 60.615 63.158 0.00 0.00 0.00 3.69
4144 4990 2.359975 GGAGGAAGGTGTTGGGCG 60.360 66.667 0.00 0.00 0.00 6.13
4162 5008 0.469917 CGAAGCCCTACATGGTGGAT 59.530 55.000 7.69 0.00 0.00 3.41
4189 5035 4.954118 TGGGTCCTCACCACGGCT 62.954 66.667 0.00 0.00 45.94 5.52
4190 5036 4.394712 GGGTCCTCACCACGGCTG 62.395 72.222 0.00 0.00 45.94 4.85
4191 5037 3.626924 GGTCCTCACCACGGCTGT 61.627 66.667 0.00 0.00 43.17 4.40
4192 5038 2.426023 GTCCTCACCACGGCTGTT 59.574 61.111 0.00 0.00 0.00 3.16
4193 5039 1.961277 GTCCTCACCACGGCTGTTG 60.961 63.158 0.00 0.00 0.00 3.33
4194 5040 2.669569 CCTCACCACGGCTGTTGG 60.670 66.667 11.30 11.30 0.00 3.77
4195 5041 2.669569 CTCACCACGGCTGTTGGG 60.670 66.667 15.71 9.30 0.00 4.12
4196 5042 4.947147 TCACCACGGCTGTTGGGC 62.947 66.667 15.71 0.00 37.12 5.36
4205 5051 3.047877 CTGTTGGGCCCGTCGAAC 61.048 66.667 19.37 16.48 0.00 3.95
4206 5052 4.629523 TGTTGGGCCCGTCGAACC 62.630 66.667 19.37 1.55 0.00 3.62
4213 5059 2.681064 CCCGTCGAACCCAGGGTA 60.681 66.667 13.17 0.00 39.05 3.69
4214 5060 2.062177 CCCGTCGAACCCAGGGTAT 61.062 63.158 13.17 1.74 39.05 2.73
4215 5061 1.440476 CCGTCGAACCCAGGGTATC 59.560 63.158 13.17 10.91 33.12 2.24
4216 5062 1.440476 CGTCGAACCCAGGGTATCC 59.560 63.158 13.17 3.39 33.12 2.59
4217 5063 1.324740 CGTCGAACCCAGGGTATCCA 61.325 60.000 13.17 0.00 33.12 3.41
4218 5064 0.464452 GTCGAACCCAGGGTATCCAG 59.536 60.000 13.17 1.85 33.12 3.86
4219 5065 0.689745 TCGAACCCAGGGTATCCAGG 60.690 60.000 13.17 0.00 39.24 4.45
4220 5066 0.981277 CGAACCCAGGGTATCCAGGT 60.981 60.000 13.17 1.54 41.86 4.00
4221 5067 0.837940 GAACCCAGGGTATCCAGGTC 59.162 60.000 13.17 0.00 39.97 3.85
4222 5068 0.623617 AACCCAGGGTATCCAGGTCC 60.624 60.000 13.17 0.00 39.97 4.46
4223 5069 2.140792 CCCAGGGTATCCAGGTCCG 61.141 68.421 2.29 0.00 37.97 4.79
4224 5070 1.382695 CCAGGGTATCCAGGTCCGT 60.383 63.158 0.00 0.00 35.22 4.69
4225 5071 1.400530 CCAGGGTATCCAGGTCCGTC 61.401 65.000 0.00 0.00 35.22 4.79
4226 5072 0.397254 CAGGGTATCCAGGTCCGTCT 60.397 60.000 0.00 0.00 34.83 4.18
4227 5073 0.397254 AGGGTATCCAGGTCCGTCTG 60.397 60.000 0.00 0.00 34.83 3.51
4228 5074 1.442148 GGTATCCAGGTCCGTCTGC 59.558 63.158 0.00 0.00 33.64 4.26
4229 5075 1.442148 GTATCCAGGTCCGTCTGCC 59.558 63.158 0.00 0.00 33.64 4.85
4230 5076 1.043673 GTATCCAGGTCCGTCTGCCT 61.044 60.000 0.00 0.00 33.64 4.75
4231 5077 0.325296 TATCCAGGTCCGTCTGCCTT 60.325 55.000 0.00 0.00 33.64 4.35
4232 5078 1.201429 ATCCAGGTCCGTCTGCCTTT 61.201 55.000 0.00 0.00 33.64 3.11
4233 5079 1.672356 CCAGGTCCGTCTGCCTTTG 60.672 63.158 0.00 0.00 33.64 2.77
4234 5080 1.071471 CAGGTCCGTCTGCCTTTGT 59.929 57.895 0.00 0.00 31.73 2.83
4235 5081 0.951040 CAGGTCCGTCTGCCTTTGTC 60.951 60.000 0.00 0.00 31.73 3.18
4236 5082 1.671379 GGTCCGTCTGCCTTTGTCC 60.671 63.158 0.00 0.00 0.00 4.02
4237 5083 1.371558 GTCCGTCTGCCTTTGTCCT 59.628 57.895 0.00 0.00 0.00 3.85
4238 5084 0.606604 GTCCGTCTGCCTTTGTCCTA 59.393 55.000 0.00 0.00 0.00 2.94
4239 5085 0.895530 TCCGTCTGCCTTTGTCCTAG 59.104 55.000 0.00 0.00 0.00 3.02
4240 5086 0.108138 CCGTCTGCCTTTGTCCTAGG 60.108 60.000 0.82 0.82 35.80 3.02
4241 5087 0.108138 CGTCTGCCTTTGTCCTAGGG 60.108 60.000 9.46 0.00 33.19 3.53
4242 5088 0.393132 GTCTGCCTTTGTCCTAGGGC 60.393 60.000 6.37 6.37 44.31 5.19
4244 5090 4.320910 GCCTTTGTCCTAGGGCAC 57.679 61.111 17.75 4.36 43.59 5.01
4245 5091 1.745489 GCCTTTGTCCTAGGGCACG 60.745 63.158 17.75 10.29 43.59 5.34
4246 5092 1.980052 CCTTTGTCCTAGGGCACGA 59.020 57.895 17.75 7.03 0.00 4.35
4247 5093 0.391263 CCTTTGTCCTAGGGCACGAC 60.391 60.000 17.75 2.66 0.00 4.34
4248 5094 0.736325 CTTTGTCCTAGGGCACGACG 60.736 60.000 17.75 0.47 0.00 5.12
4249 5095 2.775032 TTTGTCCTAGGGCACGACGC 62.775 60.000 17.75 0.00 41.28 5.19
4250 5096 3.755628 GTCCTAGGGCACGACGCA 61.756 66.667 9.01 0.00 45.17 5.24
4251 5097 2.758327 TCCTAGGGCACGACGCAT 60.758 61.111 9.46 0.00 45.17 4.73
4252 5098 2.586079 CCTAGGGCACGACGCATG 60.586 66.667 0.00 0.00 45.17 4.06
4253 5099 2.494445 CTAGGGCACGACGCATGA 59.506 61.111 0.00 0.00 45.17 3.07
4254 5100 1.878522 CTAGGGCACGACGCATGAC 60.879 63.158 0.00 0.00 45.17 3.06
4265 5111 2.800736 GCATGACGATGGCCCAAC 59.199 61.111 0.00 0.00 0.00 3.77
4266 5112 3.101209 CATGACGATGGCCCAACG 58.899 61.111 12.24 12.24 35.82 4.10
4267 5113 1.449423 CATGACGATGGCCCAACGA 60.449 57.895 20.90 0.00 33.96 3.85
4268 5114 1.153369 ATGACGATGGCCCAACGAG 60.153 57.895 20.90 0.00 33.96 4.18
4269 5115 1.899437 ATGACGATGGCCCAACGAGT 61.899 55.000 20.90 0.00 33.96 4.18
4270 5116 2.047274 ACGATGGCCCAACGAGTG 60.047 61.111 20.90 0.00 33.96 3.51
4278 5124 2.819595 CCAACGAGTGGCCCATCG 60.820 66.667 21.39 21.39 41.72 3.84
4279 5125 2.264480 CAACGAGTGGCCCATCGA 59.736 61.111 27.65 0.00 41.40 3.59
4280 5126 2.100631 CAACGAGTGGCCCATCGAC 61.101 63.158 27.65 7.84 41.40 4.20
4281 5127 2.579657 AACGAGTGGCCCATCGACA 61.580 57.895 27.65 0.00 41.40 4.35
4282 5128 2.107041 AACGAGTGGCCCATCGACAA 62.107 55.000 27.65 0.00 41.40 3.18
4283 5129 1.811266 CGAGTGGCCCATCGACAAG 60.811 63.158 19.08 0.00 41.40 3.16
4284 5130 2.045926 AGTGGCCCATCGACAAGC 60.046 61.111 0.00 0.00 0.00 4.01
4285 5131 2.359850 GTGGCCCATCGACAAGCA 60.360 61.111 0.00 0.00 0.00 3.91
4286 5132 1.750399 GTGGCCCATCGACAAGCAT 60.750 57.895 0.00 0.00 0.00 3.79
4287 5133 1.451927 TGGCCCATCGACAAGCATC 60.452 57.895 0.00 0.00 0.00 3.91
4288 5134 1.451927 GGCCCATCGACAAGCATCA 60.452 57.895 0.00 0.00 0.00 3.07
4289 5135 1.718757 GGCCCATCGACAAGCATCAC 61.719 60.000 0.00 0.00 0.00 3.06
4290 5136 1.026182 GCCCATCGACAAGCATCACA 61.026 55.000 0.00 0.00 0.00 3.58
4291 5137 1.452110 CCCATCGACAAGCATCACAA 58.548 50.000 0.00 0.00 0.00 3.33
4292 5138 1.131126 CCCATCGACAAGCATCACAAC 59.869 52.381 0.00 0.00 0.00 3.32
4293 5139 1.805943 CCATCGACAAGCATCACAACA 59.194 47.619 0.00 0.00 0.00 3.33
4294 5140 2.226200 CCATCGACAAGCATCACAACAA 59.774 45.455 0.00 0.00 0.00 2.83
4295 5141 3.485633 CATCGACAAGCATCACAACAAG 58.514 45.455 0.00 0.00 0.00 3.16
4296 5142 2.832563 TCGACAAGCATCACAACAAGA 58.167 42.857 0.00 0.00 0.00 3.02
4297 5143 2.543848 TCGACAAGCATCACAACAAGAC 59.456 45.455 0.00 0.00 0.00 3.01
4298 5144 2.545526 CGACAAGCATCACAACAAGACT 59.454 45.455 0.00 0.00 0.00 3.24
4299 5145 3.363378 CGACAAGCATCACAACAAGACTC 60.363 47.826 0.00 0.00 0.00 3.36
4300 5146 2.880890 ACAAGCATCACAACAAGACTCC 59.119 45.455 0.00 0.00 0.00 3.85
4301 5147 3.144506 CAAGCATCACAACAAGACTCCT 58.855 45.455 0.00 0.00 0.00 3.69
4302 5148 3.051081 AGCATCACAACAAGACTCCTC 57.949 47.619 0.00 0.00 0.00 3.71
4303 5149 2.369860 AGCATCACAACAAGACTCCTCA 59.630 45.455 0.00 0.00 0.00 3.86
4304 5150 2.481952 GCATCACAACAAGACTCCTCAC 59.518 50.000 0.00 0.00 0.00 3.51
4305 5151 2.509052 TCACAACAAGACTCCTCACG 57.491 50.000 0.00 0.00 0.00 4.35
4306 5152 2.028876 TCACAACAAGACTCCTCACGA 58.971 47.619 0.00 0.00 0.00 4.35
4307 5153 2.034685 TCACAACAAGACTCCTCACGAG 59.965 50.000 0.00 0.00 44.95 4.18
4325 5171 4.891037 GCCCCCTCAGCAGGCATC 62.891 72.222 0.00 0.00 46.34 3.91
4326 5172 4.201122 CCCCCTCAGCAGGCATCC 62.201 72.222 0.00 0.00 38.72 3.51
4327 5173 4.201122 CCCCTCAGCAGGCATCCC 62.201 72.222 0.00 0.00 38.72 3.85
4328 5174 4.559063 CCCTCAGCAGGCATCCCG 62.559 72.222 0.00 0.00 38.72 5.14
4329 5175 3.473647 CCTCAGCAGGCATCCCGA 61.474 66.667 0.00 0.00 35.76 5.14
4330 5176 2.108566 CTCAGCAGGCATCCCGAG 59.891 66.667 0.00 0.00 35.76 4.63
4331 5177 4.166888 TCAGCAGGCATCCCGAGC 62.167 66.667 0.00 0.00 37.32 5.03
4332 5178 4.478371 CAGCAGGCATCCCGAGCA 62.478 66.667 0.00 0.00 38.83 4.26
4333 5179 4.172512 AGCAGGCATCCCGAGCAG 62.173 66.667 0.00 0.00 38.83 4.24
4334 5180 4.166888 GCAGGCATCCCGAGCAGA 62.167 66.667 0.00 0.00 37.11 4.26
4335 5181 2.202987 CAGGCATCCCGAGCAGAC 60.203 66.667 0.00 0.00 35.76 3.51
4336 5182 2.364842 AGGCATCCCGAGCAGACT 60.365 61.111 0.00 0.00 35.76 3.24
4337 5183 1.992277 AGGCATCCCGAGCAGACTT 60.992 57.895 0.00 0.00 35.76 3.01
4338 5184 0.687757 AGGCATCCCGAGCAGACTTA 60.688 55.000 0.00 0.00 35.76 2.24
4339 5185 0.249657 GGCATCCCGAGCAGACTTAG 60.250 60.000 0.00 0.00 0.00 2.18
4340 5186 0.878086 GCATCCCGAGCAGACTTAGC 60.878 60.000 0.00 0.00 0.00 3.09
4341 5187 0.596083 CATCCCGAGCAGACTTAGCG 60.596 60.000 0.00 0.00 37.01 4.26
4342 5188 1.739338 ATCCCGAGCAGACTTAGCGG 61.739 60.000 0.00 0.00 41.53 5.52
4343 5189 2.415608 CCCGAGCAGACTTAGCGGA 61.416 63.158 0.00 0.00 44.43 5.54
4344 5190 1.736586 CCGAGCAGACTTAGCGGAT 59.263 57.895 0.00 0.00 44.43 4.18
4345 5191 0.318275 CCGAGCAGACTTAGCGGATC 60.318 60.000 0.00 0.00 44.43 3.36
4346 5192 0.318275 CGAGCAGACTTAGCGGATCC 60.318 60.000 0.00 0.00 37.01 3.36
4347 5193 0.318275 GAGCAGACTTAGCGGATCCG 60.318 60.000 30.03 30.03 43.09 4.18
4357 5203 3.854669 CGGATCCGCCAAGAGCCT 61.855 66.667 23.37 0.00 40.30 4.58
4358 5204 2.110006 GGATCCGCCAAGAGCCTC 59.890 66.667 0.00 0.00 39.32 4.70
4359 5205 2.279784 GATCCGCCAAGAGCCTCG 60.280 66.667 0.00 0.00 38.78 4.63
4360 5206 4.537433 ATCCGCCAAGAGCCTCGC 62.537 66.667 0.00 0.00 38.78 5.03
4364 5210 4.135153 GCCAAGAGCCTCGCGAGA 62.135 66.667 36.59 1.60 39.12 4.04
4365 5211 2.202676 CCAAGAGCCTCGCGAGAC 60.203 66.667 36.59 26.65 35.39 3.36
4366 5212 2.705821 CCAAGAGCCTCGCGAGACT 61.706 63.158 36.59 31.30 35.39 3.24
4367 5213 1.226547 CAAGAGCCTCGCGAGACTC 60.227 63.158 36.16 36.16 34.46 3.36
4368 5214 2.411504 AAGAGCCTCGCGAGACTCC 61.412 63.158 38.13 24.73 34.71 3.85
4369 5215 3.894947 GAGCCTCGCGAGACTCCC 61.895 72.222 34.16 16.85 35.39 4.30
4370 5216 4.434354 AGCCTCGCGAGACTCCCT 62.434 66.667 36.59 19.75 35.39 4.20
4371 5217 3.894947 GCCTCGCGAGACTCCCTC 61.895 72.222 36.59 12.30 38.55 4.30
4372 5218 2.438614 CCTCGCGAGACTCCCTCA 60.439 66.667 36.59 0.00 42.06 3.86
4373 5219 2.766400 CCTCGCGAGACTCCCTCAC 61.766 68.421 36.59 0.00 42.06 3.51
4374 5220 3.102107 CTCGCGAGACTCCCTCACG 62.102 68.421 32.06 0.00 45.85 4.35
4376 5222 2.795297 GCGAGACTCCCTCACGAG 59.205 66.667 0.00 0.00 42.06 4.18
4385 5231 3.827898 CCTCACGAGGCGGTCTCC 61.828 72.222 3.65 0.00 42.44 3.71
4386 5232 3.827898 CTCACGAGGCGGTCTCCC 61.828 72.222 3.65 0.00 39.30 4.30
4396 5242 3.003763 GGTCTCCCGAGGCAACCT 61.004 66.667 0.00 0.00 33.98 3.50
4397 5243 2.579738 GTCTCCCGAGGCAACCTC 59.420 66.667 3.42 3.42 46.44 3.85
4415 5261 4.323477 CCGGAGGCAACGGGTCAA 62.323 66.667 11.45 0.00 46.14 3.18
4416 5262 2.742372 CGGAGGCAACGGGTCAAG 60.742 66.667 0.00 0.00 46.39 3.02
4417 5263 2.747686 GGAGGCAACGGGTCAAGA 59.252 61.111 0.00 0.00 46.39 3.02
4418 5264 1.376037 GGAGGCAACGGGTCAAGAG 60.376 63.158 0.00 0.00 46.39 2.85
4419 5265 2.032681 AGGCAACGGGTCAAGAGC 59.967 61.111 0.00 0.00 46.39 4.09
4420 5266 3.056328 GGCAACGGGTCAAGAGCC 61.056 66.667 8.22 8.22 45.13 4.70
4426 5272 3.668386 GGGTCAAGAGCCGTTTGG 58.332 61.111 2.14 0.00 39.39 3.28
4427 5273 1.228154 GGGTCAAGAGCCGTTTGGT 60.228 57.895 2.14 0.00 39.39 3.67
4428 5274 0.822121 GGGTCAAGAGCCGTTTGGTT 60.822 55.000 2.14 0.00 39.39 3.67
4429 5275 0.591659 GGTCAAGAGCCGTTTGGTTC 59.408 55.000 0.00 0.00 45.26 3.62
4436 5282 2.968156 CCGTTTGGTTCGGTCGCA 60.968 61.111 0.00 0.00 42.62 5.10
4437 5283 2.247267 CGTTTGGTTCGGTCGCAC 59.753 61.111 0.00 0.00 0.00 5.34
4438 5284 2.247267 GTTTGGTTCGGTCGCACG 59.753 61.111 0.00 0.00 0.00 5.34
4439 5285 2.968156 TTTGGTTCGGTCGCACGG 60.968 61.111 0.00 0.00 0.00 4.94
4440 5286 4.973055 TTGGTTCGGTCGCACGGG 62.973 66.667 0.00 0.00 0.00 5.28
4442 5288 4.446413 GGTTCGGTCGCACGGGAT 62.446 66.667 0.00 0.00 0.00 3.85
4443 5289 2.884207 GTTCGGTCGCACGGGATC 60.884 66.667 0.00 0.00 0.00 3.36
4444 5290 4.485834 TTCGGTCGCACGGGATCG 62.486 66.667 10.22 10.22 41.79 3.69
4481 5327 4.057428 GCGAGTGGCGACAGAGGT 62.057 66.667 0.00 0.00 44.46 3.85
4482 5328 2.179517 CGAGTGGCGACAGAGGTC 59.820 66.667 0.00 0.00 44.46 3.85
4490 5336 3.952811 GACAGAGGTCGTGCCAAC 58.047 61.111 2.06 0.00 40.61 3.77
4491 5337 1.069090 GACAGAGGTCGTGCCAACA 59.931 57.895 2.06 0.00 40.61 3.33
4492 5338 0.946221 GACAGAGGTCGTGCCAACAG 60.946 60.000 2.06 0.00 40.61 3.16
4493 5339 1.669115 CAGAGGTCGTGCCAACAGG 60.669 63.158 2.06 0.00 40.61 4.00
4503 5349 3.197790 CCAACAGGCGCGGATGAG 61.198 66.667 8.83 4.98 0.00 2.90
4504 5350 3.197790 CAACAGGCGCGGATGAGG 61.198 66.667 8.83 1.27 0.00 3.86
4505 5351 3.390521 AACAGGCGCGGATGAGGA 61.391 61.111 8.83 0.00 0.00 3.71
4506 5352 3.376935 AACAGGCGCGGATGAGGAG 62.377 63.158 8.83 0.00 0.00 3.69
4507 5353 4.598894 CAGGCGCGGATGAGGAGG 62.599 72.222 8.83 0.00 0.00 4.30
4508 5354 4.841617 AGGCGCGGATGAGGAGGA 62.842 66.667 8.83 0.00 0.00 3.71
4509 5355 3.620785 GGCGCGGATGAGGAGGAT 61.621 66.667 8.83 0.00 0.00 3.24
4510 5356 2.423446 GCGCGGATGAGGAGGATT 59.577 61.111 8.83 0.00 0.00 3.01
4511 5357 1.227674 GCGCGGATGAGGAGGATTT 60.228 57.895 8.83 0.00 0.00 2.17
4512 5358 1.224722 GCGCGGATGAGGAGGATTTC 61.225 60.000 8.83 0.00 0.00 2.17
4523 5369 3.467776 AGGATTTCCTCTTCTGCGC 57.532 52.632 0.00 0.00 44.77 6.09
4524 5370 0.908198 AGGATTTCCTCTTCTGCGCT 59.092 50.000 9.73 0.00 44.77 5.92
4525 5371 2.111384 AGGATTTCCTCTTCTGCGCTA 58.889 47.619 9.73 0.00 44.77 4.26
4526 5372 2.501723 AGGATTTCCTCTTCTGCGCTAA 59.498 45.455 9.73 1.80 44.77 3.09
4527 5373 2.869192 GGATTTCCTCTTCTGCGCTAAG 59.131 50.000 9.73 12.76 0.00 2.18
4528 5374 2.386661 TTTCCTCTTCTGCGCTAAGG 57.613 50.000 18.74 13.23 0.00 2.69
4529 5375 0.537188 TTCCTCTTCTGCGCTAAGGG 59.463 55.000 18.74 16.43 0.00 3.95
4530 5376 0.324368 TCCTCTTCTGCGCTAAGGGA 60.324 55.000 20.30 19.74 0.00 4.20
4531 5377 0.103937 CCTCTTCTGCGCTAAGGGAG 59.896 60.000 20.30 14.72 0.00 4.30
4540 5386 4.972875 CTAAGGGAGCAAGGCCAG 57.027 61.111 5.01 0.00 0.00 4.85
4541 5387 1.452833 CTAAGGGAGCAAGGCCAGC 60.453 63.158 5.01 9.16 0.00 4.85
4542 5388 2.202236 CTAAGGGAGCAAGGCCAGCA 62.202 60.000 20.51 0.00 0.00 4.41
4543 5389 1.788518 TAAGGGAGCAAGGCCAGCAA 61.789 55.000 20.51 0.00 0.00 3.91
4544 5390 3.066814 GGGAGCAAGGCCAGCAAG 61.067 66.667 20.51 0.00 0.00 4.01
4545 5391 3.756727 GGAGCAAGGCCAGCAAGC 61.757 66.667 20.51 9.49 0.00 4.01
4554 5400 4.659172 CCAGCAAGCCGGTTCCCA 62.659 66.667 1.90 0.00 0.00 4.37
4555 5401 2.597217 CAGCAAGCCGGTTCCCAA 60.597 61.111 1.90 0.00 0.00 4.12
4556 5402 2.197324 AGCAAGCCGGTTCCCAAA 59.803 55.556 1.90 0.00 0.00 3.28
4557 5403 1.903404 AGCAAGCCGGTTCCCAAAG 60.903 57.895 1.90 0.00 0.00 2.77
4558 5404 2.650778 CAAGCCGGTTCCCAAAGC 59.349 61.111 1.90 0.00 0.00 3.51
4559 5405 2.197324 AAGCCGGTTCCCAAAGCA 59.803 55.556 1.90 0.00 33.03 3.91
4560 5406 1.456705 AAGCCGGTTCCCAAAGCAA 60.457 52.632 1.90 0.00 33.03 3.91
4561 5407 1.744320 AAGCCGGTTCCCAAAGCAAC 61.744 55.000 1.90 0.00 33.03 4.17
4562 5408 3.047735 CCGGTTCCCAAAGCAACC 58.952 61.111 0.00 0.00 39.04 3.77
4563 5409 2.570284 CCGGTTCCCAAAGCAACCC 61.570 63.158 0.00 0.00 39.22 4.11
4564 5410 2.570284 CGGTTCCCAAAGCAACCCC 61.570 63.158 0.00 0.00 39.22 4.95
4565 5411 2.214216 GGTTCCCAAAGCAACCCCC 61.214 63.158 0.00 0.00 36.76 5.40
4566 5412 1.458588 GTTCCCAAAGCAACCCCCA 60.459 57.895 0.00 0.00 0.00 4.96
4567 5413 1.051556 GTTCCCAAAGCAACCCCCAA 61.052 55.000 0.00 0.00 0.00 4.12
4568 5414 0.326618 TTCCCAAAGCAACCCCCAAA 60.327 50.000 0.00 0.00 0.00 3.28
4569 5415 0.762461 TCCCAAAGCAACCCCCAAAG 60.762 55.000 0.00 0.00 0.00 2.77
4570 5416 1.754107 CCAAAGCAACCCCCAAAGG 59.246 57.895 0.00 0.00 0.00 3.11
4571 5417 1.053835 CCAAAGCAACCCCCAAAGGT 61.054 55.000 0.00 0.00 44.00 3.50
4577 5423 4.614036 ACCCCCAAAGGTTGCCCG 62.614 66.667 0.00 0.00 36.44 6.13
4578 5424 4.293671 CCCCCAAAGGTTGCCCGA 62.294 66.667 0.00 0.00 35.12 5.14
4579 5425 2.037208 CCCCAAAGGTTGCCCGAT 59.963 61.111 0.00 0.00 35.12 4.18
4580 5426 2.052104 CCCCAAAGGTTGCCCGATC 61.052 63.158 0.00 0.00 35.12 3.69
4581 5427 2.406616 CCCAAAGGTTGCCCGATCG 61.407 63.158 8.51 8.51 35.12 3.69
4582 5428 2.406616 CCAAAGGTTGCCCGATCGG 61.407 63.158 27.65 27.65 35.12 4.18
4583 5429 1.674322 CAAAGGTTGCCCGATCGGT 60.674 57.895 31.22 10.24 35.12 4.69
4584 5430 1.674322 AAAGGTTGCCCGATCGGTG 60.674 57.895 31.22 22.89 35.12 4.94
4585 5431 4.778143 AGGTTGCCCGATCGGTGC 62.778 66.667 31.22 30.27 35.12 5.01
4587 5433 3.053291 GTTGCCCGATCGGTGCAA 61.053 61.111 37.40 37.40 43.71 4.08
4588 5434 2.745884 TTGCCCGATCGGTGCAAG 60.746 61.111 37.40 24.10 42.29 4.01
4589 5435 3.247056 TTGCCCGATCGGTGCAAGA 62.247 57.895 37.40 26.65 42.29 3.02
4590 5436 2.435938 GCCCGATCGGTGCAAGAA 60.436 61.111 30.59 0.00 33.59 2.52
4591 5437 2.464459 GCCCGATCGGTGCAAGAAG 61.464 63.158 30.59 17.32 33.59 2.85
4592 5438 1.218047 CCCGATCGGTGCAAGAAGA 59.782 57.895 31.22 0.00 0.00 2.87
4593 5439 1.084370 CCCGATCGGTGCAAGAAGAC 61.084 60.000 31.22 0.00 0.00 3.01
4594 5440 1.084370 CCGATCGGTGCAAGAAGACC 61.084 60.000 26.35 0.00 0.00 3.85
4595 5441 0.389817 CGATCGGTGCAAGAAGACCA 60.390 55.000 7.38 0.00 31.97 4.02
4596 5442 1.808411 GATCGGTGCAAGAAGACCAA 58.192 50.000 0.00 0.00 31.97 3.67
4597 5443 1.734465 GATCGGTGCAAGAAGACCAAG 59.266 52.381 0.00 0.00 31.97 3.61
4598 5444 0.756294 TCGGTGCAAGAAGACCAAGA 59.244 50.000 0.00 0.00 31.97 3.02
4599 5445 0.868406 CGGTGCAAGAAGACCAAGAC 59.132 55.000 0.00 0.00 31.97 3.01
4600 5446 0.868406 GGTGCAAGAAGACCAAGACG 59.132 55.000 0.00 0.00 31.97 4.18
4601 5447 1.540363 GGTGCAAGAAGACCAAGACGA 60.540 52.381 0.00 0.00 31.97 4.20
4602 5448 1.527311 GTGCAAGAAGACCAAGACGAC 59.473 52.381 0.00 0.00 0.00 4.34
4603 5449 0.784778 GCAAGAAGACCAAGACGACG 59.215 55.000 0.00 0.00 0.00 5.12
4604 5450 1.419374 CAAGAAGACCAAGACGACGG 58.581 55.000 0.00 0.00 0.00 4.79
4605 5451 0.317479 AAGAAGACCAAGACGACGGG 59.683 55.000 0.00 0.00 0.00 5.28
4606 5452 1.737008 GAAGACCAAGACGACGGGC 60.737 63.158 0.00 0.00 0.00 6.13
4611 5457 4.764336 CAAGACGACGGGCGCGTA 62.764 66.667 29.59 0.00 46.04 4.42
4612 5458 4.471726 AAGACGACGGGCGCGTAG 62.472 66.667 29.59 29.48 46.04 3.51
4614 5460 4.883300 GACGACGGGCGCGTAGAG 62.883 72.222 35.51 26.86 46.04 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.145738 ACAACACCTTGCCTGGATCTT 59.854 47.619 0.00 0.00 0.00 2.40
196 237 1.237285 GCCACCTTGCTGATGTCGTT 61.237 55.000 0.00 0.00 0.00 3.85
226 267 3.309296 CTGGAGGGACCTTATTCTAGCA 58.691 50.000 0.00 0.00 39.86 3.49
246 287 2.016905 AGTTGAGGTAGTGACAGCCT 57.983 50.000 0.00 0.00 34.93 4.58
248 289 4.425520 GACATAGTTGAGGTAGTGACAGC 58.574 47.826 0.00 0.00 0.00 4.40
284 325 4.016444 GGAAACAATGACCTAGCCATTCA 58.984 43.478 5.84 0.00 32.40 2.57
337 378 0.176680 ATCATCGTCAGCACCACCTC 59.823 55.000 0.00 0.00 0.00 3.85
346 387 6.931281 ACCTTATTCCAACATATCATCGTCAG 59.069 38.462 0.00 0.00 0.00 3.51
382 423 2.002505 ACATCATCGAGGTAGGGAGG 57.997 55.000 0.00 0.00 0.00 4.30
440 481 4.283212 CCAAGATCCAAAAAGGGCTAACAA 59.717 41.667 0.00 0.00 38.24 2.83
491 541 2.330041 CACCAAACGCCGGACAAC 59.670 61.111 5.05 0.00 0.00 3.32
492 542 3.587933 GCACCAAACGCCGGACAA 61.588 61.111 5.05 0.00 0.00 3.18
497 547 3.521308 GACTGTGCACCAAACGCCG 62.521 63.158 15.69 0.00 0.00 6.46
535 837 9.853177 AACAAATAAAATTACAATGGAAACCCA 57.147 25.926 0.00 0.00 38.24 4.51
577 882 7.999679 ACAATGAAAATGAGAAGACAACAAGA 58.000 30.769 0.00 0.00 0.00 3.02
578 883 9.903682 ATACAATGAAAATGAGAAGACAACAAG 57.096 29.630 0.00 0.00 0.00 3.16
589 894 9.643693 ACAAAAGGCTAATACAATGAAAATGAG 57.356 29.630 0.00 0.00 0.00 2.90
601 906 9.699703 TGGTTATTGAAAACAAAAGGCTAATAC 57.300 29.630 0.00 0.00 0.00 1.89
646 956 2.414138 GCAAAATGGTCAAGCATGAAGC 59.586 45.455 0.00 0.00 46.19 3.86
647 957 2.997986 GGCAAAATGGTCAAGCATGAAG 59.002 45.455 0.00 0.00 37.30 3.02
648 958 2.289569 GGGCAAAATGGTCAAGCATGAA 60.290 45.455 0.00 0.00 37.30 2.57
649 959 1.275856 GGGCAAAATGGTCAAGCATGA 59.724 47.619 0.00 0.00 0.00 3.07
650 960 1.002201 TGGGCAAAATGGTCAAGCATG 59.998 47.619 0.00 0.00 0.00 4.06
684 994 0.879090 CAAACACCCCCTTACTTCGC 59.121 55.000 0.00 0.00 0.00 4.70
686 996 2.670019 ACCAAACACCCCCTTACTTC 57.330 50.000 0.00 0.00 0.00 3.01
689 999 2.158579 TCTGAACCAAACACCCCCTTAC 60.159 50.000 0.00 0.00 0.00 2.34
690 1000 2.136863 TCTGAACCAAACACCCCCTTA 58.863 47.619 0.00 0.00 0.00 2.69
691 1001 0.930726 TCTGAACCAAACACCCCCTT 59.069 50.000 0.00 0.00 0.00 3.95
692 1002 0.930726 TTCTGAACCAAACACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
693 1003 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
694 1004 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
695 1005 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
696 1006 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
697 1007 4.065789 CCTAGGACTTCTGAACCAAACAC 58.934 47.826 1.05 0.00 0.00 3.32
698 1008 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
699 1009 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
700 1010 4.618920 GTCCTAGGACTTCTGAACCAAA 57.381 45.455 31.12 0.00 41.57 3.28
763 1073 9.901172 TTTTCTACAGGACTAGAAAAAGACTTT 57.099 29.630 10.35 0.00 44.33 2.66
770 1080 8.491958 AGGAACTTTTTCTACAGGACTAGAAAA 58.508 33.333 9.16 9.16 45.05 2.29
771 1081 8.030913 AGGAACTTTTTCTACAGGACTAGAAA 57.969 34.615 0.00 0.00 39.79 2.52
772 1082 7.613551 AGGAACTTTTTCTACAGGACTAGAA 57.386 36.000 0.00 0.00 27.25 2.10
791 1101 1.977056 AGGAACCAAACGGAAGGAAC 58.023 50.000 0.00 0.00 0.00 3.62
792 1102 2.039348 CCTAGGAACCAAACGGAAGGAA 59.961 50.000 1.05 0.00 0.00 3.36
793 1103 1.626825 CCTAGGAACCAAACGGAAGGA 59.373 52.381 1.05 0.00 0.00 3.36
794 1104 1.339727 CCCTAGGAACCAAACGGAAGG 60.340 57.143 11.48 0.00 0.00 3.46
795 1105 1.626825 TCCCTAGGAACCAAACGGAAG 59.373 52.381 11.48 0.00 0.00 3.46
796 1106 1.348696 GTCCCTAGGAACCAAACGGAA 59.651 52.381 11.48 0.00 31.38 4.30
797 1107 0.978907 GTCCCTAGGAACCAAACGGA 59.021 55.000 11.48 0.00 31.38 4.69
798 1108 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
799 1109 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
800 1110 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
801 1111 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
802 1112 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
803 1113 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
804 1114 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
805 1115 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
806 1116 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
807 1117 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
808 1118 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
809 1119 9.529823 AAATAAAAGTCCCTAAAAAGTCCCTAG 57.470 33.333 0.00 0.00 0.00 3.02
810 1120 9.886337 AAAATAAAAGTCCCTAAAAAGTCCCTA 57.114 29.630 0.00 0.00 0.00 3.53
811 1121 8.792830 AAAATAAAAGTCCCTAAAAAGTCCCT 57.207 30.769 0.00 0.00 0.00 4.20
812 1122 7.811236 CGAAAATAAAAGTCCCTAAAAAGTCCC 59.189 37.037 0.00 0.00 0.00 4.46
813 1123 7.811236 CCGAAAATAAAAGTCCCTAAAAAGTCC 59.189 37.037 0.00 0.00 0.00 3.85
814 1124 7.811236 CCCGAAAATAAAAGTCCCTAAAAAGTC 59.189 37.037 0.00 0.00 0.00 3.01
815 1125 7.506599 TCCCGAAAATAAAAGTCCCTAAAAAGT 59.493 33.333 0.00 0.00 0.00 2.66
816 1126 7.811236 GTCCCGAAAATAAAAGTCCCTAAAAAG 59.189 37.037 0.00 0.00 0.00 2.27
817 1127 7.506599 AGTCCCGAAAATAAAAGTCCCTAAAAA 59.493 33.333 0.00 0.00 0.00 1.94
818 1128 7.005902 AGTCCCGAAAATAAAAGTCCCTAAAA 58.994 34.615 0.00 0.00 0.00 1.52
819 1129 6.545567 AGTCCCGAAAATAAAAGTCCCTAAA 58.454 36.000 0.00 0.00 0.00 1.85
820 1130 6.130692 AGTCCCGAAAATAAAAGTCCCTAA 57.869 37.500 0.00 0.00 0.00 2.69
821 1131 5.767277 AGTCCCGAAAATAAAAGTCCCTA 57.233 39.130 0.00 0.00 0.00 3.53
822 1132 4.652679 AGTCCCGAAAATAAAAGTCCCT 57.347 40.909 0.00 0.00 0.00 4.20
823 1133 6.822667 TTTAGTCCCGAAAATAAAAGTCCC 57.177 37.500 0.00 0.00 0.00 4.46
824 1134 8.355169 ACTTTTTAGTCCCGAAAATAAAAGTCC 58.645 33.333 0.00 0.00 39.01 3.85
825 1135 9.390795 GACTTTTTAGTCCCGAAAATAAAAGTC 57.609 33.333 16.76 16.76 45.63 3.01
826 1136 8.071967 CGACTTTTTAGTCCCGAAAATAAAAGT 58.928 33.333 0.00 0.00 43.20 2.66
827 1137 7.060289 GCGACTTTTTAGTCCCGAAAATAAAAG 59.940 37.037 0.00 0.00 37.23 2.27
828 1138 6.857451 GCGACTTTTTAGTCCCGAAAATAAAA 59.143 34.615 0.00 0.00 35.52 1.52
829 1139 6.205270 AGCGACTTTTTAGTCCCGAAAATAAA 59.795 34.615 0.00 0.00 35.52 1.40
830 1140 5.702209 AGCGACTTTTTAGTCCCGAAAATAA 59.298 36.000 0.00 0.00 35.52 1.40
831 1141 5.121142 CAGCGACTTTTTAGTCCCGAAAATA 59.879 40.000 0.00 0.00 35.52 1.40
832 1142 4.070009 AGCGACTTTTTAGTCCCGAAAAT 58.930 39.130 0.00 0.00 35.52 1.82
833 1143 3.249080 CAGCGACTTTTTAGTCCCGAAAA 59.751 43.478 0.00 0.00 35.52 2.29
834 1144 2.803956 CAGCGACTTTTTAGTCCCGAAA 59.196 45.455 0.00 0.00 35.52 3.46
835 1145 2.036217 TCAGCGACTTTTTAGTCCCGAA 59.964 45.455 0.00 0.00 35.52 4.30
836 1146 1.614903 TCAGCGACTTTTTAGTCCCGA 59.385 47.619 0.00 0.00 35.52 5.14
837 1147 2.074547 TCAGCGACTTTTTAGTCCCG 57.925 50.000 0.00 0.00 35.52 5.14
838 1148 2.483106 GGTTCAGCGACTTTTTAGTCCC 59.517 50.000 0.00 0.00 35.52 4.46
839 1149 3.135994 TGGTTCAGCGACTTTTTAGTCC 58.864 45.455 0.00 0.00 35.52 3.85
840 1150 4.773510 CTTGGTTCAGCGACTTTTTAGTC 58.226 43.478 0.00 0.00 35.59 2.59
841 1151 3.003378 GCTTGGTTCAGCGACTTTTTAGT 59.997 43.478 0.00 0.00 0.00 2.24
842 1152 3.555518 GCTTGGTTCAGCGACTTTTTAG 58.444 45.455 0.00 0.00 0.00 1.85
843 1153 2.292292 GGCTTGGTTCAGCGACTTTTTA 59.708 45.455 0.00 0.00 41.12 1.52
844 1154 1.067060 GGCTTGGTTCAGCGACTTTTT 59.933 47.619 0.00 0.00 41.12 1.94
845 1155 0.668535 GGCTTGGTTCAGCGACTTTT 59.331 50.000 0.00 0.00 41.12 2.27
846 1156 1.172812 GGGCTTGGTTCAGCGACTTT 61.173 55.000 0.00 0.00 41.12 2.66
847 1157 1.600916 GGGCTTGGTTCAGCGACTT 60.601 57.895 0.00 0.00 41.12 3.01
848 1158 2.032681 GGGCTTGGTTCAGCGACT 59.967 61.111 0.00 0.00 41.12 4.18
849 1159 3.056328 GGGGCTTGGTTCAGCGAC 61.056 66.667 0.00 0.00 41.12 5.19
850 1160 4.344865 GGGGGCTTGGTTCAGCGA 62.345 66.667 0.00 0.00 41.12 4.93
851 1161 2.478335 TTAGGGGGCTTGGTTCAGCG 62.478 60.000 0.00 0.00 41.12 5.18
852 1162 0.681243 CTTAGGGGGCTTGGTTCAGC 60.681 60.000 0.00 0.00 39.28 4.26
853 1163 0.698818 ACTTAGGGGGCTTGGTTCAG 59.301 55.000 0.00 0.00 0.00 3.02
854 1164 1.074889 GAACTTAGGGGGCTTGGTTCA 59.925 52.381 0.00 0.00 34.88 3.18
855 1165 1.616187 GGAACTTAGGGGGCTTGGTTC 60.616 57.143 0.00 0.00 34.27 3.62
856 1166 0.408309 GGAACTTAGGGGGCTTGGTT 59.592 55.000 0.00 0.00 0.00 3.67
857 1167 0.774491 TGGAACTTAGGGGGCTTGGT 60.774 55.000 0.00 0.00 0.00 3.67
858 1168 0.034089 CTGGAACTTAGGGGGCTTGG 60.034 60.000 0.00 0.00 0.00 3.61
859 1169 0.681243 GCTGGAACTTAGGGGGCTTG 60.681 60.000 0.00 0.00 0.00 4.01
860 1170 1.691823 GCTGGAACTTAGGGGGCTT 59.308 57.895 0.00 0.00 0.00 4.35
861 1171 2.309504 GGCTGGAACTTAGGGGGCT 61.310 63.158 0.00 0.00 0.00 5.19
862 1172 2.275748 GGCTGGAACTTAGGGGGC 59.724 66.667 0.00 0.00 0.00 5.80
863 1173 2.590092 CGGCTGGAACTTAGGGGG 59.410 66.667 0.00 0.00 0.00 5.40
864 1174 2.124695 GCGGCTGGAACTTAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
865 1175 1.745489 GTGCGGCTGGAACTTAGGG 60.745 63.158 0.00 0.00 0.00 3.53
866 1176 1.745489 GGTGCGGCTGGAACTTAGG 60.745 63.158 0.00 0.00 0.00 2.69
867 1177 0.605319 TTGGTGCGGCTGGAACTTAG 60.605 55.000 2.93 0.00 0.00 2.18
876 1264 2.044946 GAAGGGATTGGTGCGGCT 60.045 61.111 0.00 0.00 0.00 5.52
975 1363 4.587189 GAAGGATCCCGGGCGTCG 62.587 72.222 18.49 0.00 38.88 5.12
976 1364 4.237207 GGAAGGATCCCGGGCGTC 62.237 72.222 18.49 16.47 40.10 5.19
1043 1431 2.362736 ACTTGGACTCGTCGCATACTA 58.637 47.619 0.00 0.00 0.00 1.82
1114 1524 2.713708 AGGGAGAAGGATTGGATTAGCC 59.286 50.000 0.00 0.00 37.10 3.93
1235 1646 4.821589 CTCTTCCAGCGGCCCGTC 62.822 72.222 4.45 0.00 0.00 4.79
1283 1700 5.641709 TGAACACAAAACGTTAGCATGAAA 58.358 33.333 0.00 0.00 0.00 2.69
1382 1857 2.181954 AGAAGACGTCGGTGTACTCT 57.818 50.000 10.46 2.26 0.00 3.24
1489 1978 2.726821 AGACGCCAATTGATGACCAAT 58.273 42.857 7.12 0.00 46.86 3.16
1561 2051 8.665685 CGGTAGCAGAGAATACAGTTAAAAATT 58.334 33.333 0.00 0.00 0.00 1.82
1562 2052 7.201617 GCGGTAGCAGAGAATACAGTTAAAAAT 60.202 37.037 0.00 0.00 44.35 1.82
1569 2059 2.873133 GCGGTAGCAGAGAATACAGT 57.127 50.000 0.00 0.00 44.35 3.55
1646 2137 5.590259 ACCACCGTACACTAATATAAGACGT 59.410 40.000 0.00 0.00 0.00 4.34
1647 2138 6.064846 ACCACCGTACACTAATATAAGACG 57.935 41.667 0.00 0.00 0.00 4.18
1648 2139 6.199719 GCAACCACCGTACACTAATATAAGAC 59.800 42.308 0.00 0.00 0.00 3.01
1649 2140 6.127394 TGCAACCACCGTACACTAATATAAGA 60.127 38.462 0.00 0.00 0.00 2.10
1667 2158 7.658525 AACCATGAGATAAATAATGCAACCA 57.341 32.000 0.00 0.00 0.00 3.67
1685 2176 5.647658 TCAGAAACATTACTGCCTAACCATG 59.352 40.000 0.00 0.00 34.57 3.66
1719 2218 6.741992 TTCAACATGCTAGTTACATCCTTG 57.258 37.500 0.00 0.00 0.00 3.61
1730 2229 5.860182 CAGTCCAACAAATTCAACATGCTAG 59.140 40.000 0.00 0.00 0.00 3.42
1894 2393 0.379669 ACGCATGCTAGCATCAAAGC 59.620 50.000 27.34 24.09 39.25 3.51
1907 2406 1.535028 TCACAAGTAAAGGCACGCATG 59.465 47.619 0.00 0.00 0.00 4.06
1911 2410 3.564511 CCAATTCACAAGTAAAGGCACG 58.435 45.455 0.00 0.00 0.00 5.34
1943 2443 6.648879 TCAAACCCTTCCTTTGATTAACAG 57.351 37.500 0.00 0.00 33.60 3.16
2038 2543 2.706339 ACTGGCTCCAGATTTGCTAG 57.294 50.000 21.75 0.00 46.30 3.42
2148 2657 6.214191 TGTGAACCTGCAAAATGAGTAAAA 57.786 33.333 0.00 0.00 0.00 1.52
2169 2678 7.283329 ACAGACTCATCTAACTTCCTTTTTGT 58.717 34.615 0.00 0.00 32.25 2.83
2242 2751 7.561356 CCAGTTTCTCCTTGGTATCCAAAATAT 59.439 37.037 2.85 0.00 43.44 1.28
2291 2800 2.105649 TGGCATACATCTTATTCGGCCA 59.894 45.455 2.24 0.00 46.95 5.36
2443 3001 1.476891 TGCCACGGAGAATACTGAGTC 59.523 52.381 0.00 0.00 0.00 3.36
2459 3017 1.500474 CCACTAGAAGATCCCTGCCA 58.500 55.000 0.00 0.00 0.00 4.92
2537 3095 6.251549 GCAAAACTAGATAAAGAGCGGAAAG 58.748 40.000 0.00 0.00 0.00 2.62
2552 3110 2.483583 TTTGTGCACCGCAAAACTAG 57.516 45.000 15.69 0.00 41.47 2.57
2797 3608 8.603242 ACCTTTTATTAGGTATAAGCGATGTG 57.397 34.615 0.00 0.00 46.65 3.21
2822 3633 6.017192 ACACTGTATTCTTCTGGACCTCTAA 58.983 40.000 0.00 0.00 0.00 2.10
3200 4029 8.949421 AGGATATCCACAATTCCAAATAGTAGT 58.051 33.333 23.81 0.00 38.89 2.73
3201 4030 9.224267 CAGGATATCCACAATTCCAAATAGTAG 57.776 37.037 23.81 0.00 38.89 2.57
3202 4031 7.665559 GCAGGATATCCACAATTCCAAATAGTA 59.334 37.037 23.81 0.00 38.89 1.82
3470 4300 3.469008 TGTTCCATGTTAGGCGATAGG 57.531 47.619 0.00 0.00 0.00 2.57
3529 4370 4.873827 TGCCGGACTGTATCTGTTATTTTC 59.126 41.667 5.05 0.00 30.80 2.29
3676 4521 1.944024 AGGACGATGCACAAAACGAAA 59.056 42.857 0.00 0.00 0.00 3.46
3681 4526 3.734463 TCAAGTAGGACGATGCACAAAA 58.266 40.909 0.00 0.00 0.00 2.44
3795 4640 3.071479 GACCAAGTATCAGGTGCGAAAA 58.929 45.455 0.00 0.00 38.50 2.29
3849 4694 2.182825 ACATCATCGTCGCTTCGTTAC 58.817 47.619 0.00 0.00 0.00 2.50
3900 4746 3.010420 GCCTCCAGCGATAAAAAGAACT 58.990 45.455 0.00 0.00 0.00 3.01
3939 4785 7.885297 TCCAGGATGAAACTGAATAACAAAAG 58.115 34.615 0.00 0.00 39.69 2.27
3940 4786 7.505585 ACTCCAGGATGAAACTGAATAACAAAA 59.494 33.333 0.00 0.00 39.69 2.44
3946 4792 7.733773 TTCTACTCCAGGATGAAACTGAATA 57.266 36.000 0.00 0.00 39.69 1.75
3990 4836 7.722363 TCTAGAGAAAACCATTTTGGAAAACC 58.278 34.615 0.00 0.00 40.96 3.27
3991 4837 9.764363 ATTCTAGAGAAAACCATTTTGGAAAAC 57.236 29.630 0.00 0.00 37.36 2.43
3992 4838 9.762933 CATTCTAGAGAAAACCATTTTGGAAAA 57.237 29.630 0.00 0.00 37.36 2.29
3993 4839 9.142014 TCATTCTAGAGAAAACCATTTTGGAAA 57.858 29.630 0.00 0.00 37.36 3.13
3994 4840 8.704849 TCATTCTAGAGAAAACCATTTTGGAA 57.295 30.769 0.00 0.00 37.36 3.53
3995 4841 8.704849 TTCATTCTAGAGAAAACCATTTTGGA 57.295 30.769 0.00 0.00 37.36 3.53
3996 4842 9.762933 TTTTCATTCTAGAGAAAACCATTTTGG 57.237 29.630 13.22 0.00 38.43 3.28
4002 4848 9.184523 TGTTCTTTTTCATTCTAGAGAAAACCA 57.815 29.630 15.71 9.76 41.77 3.67
4019 4865 2.443255 TGAGCCCCTCTCTGTTCTTTTT 59.557 45.455 0.00 0.00 42.38 1.94
4094 4940 1.008327 TGGCTGGATAAGAGGAGGTGA 59.992 52.381 0.00 0.00 0.00 4.02
4104 4950 4.169696 CGGCGGGTGGCTGGATAA 62.170 66.667 0.00 0.00 44.68 1.75
4122 4968 4.016706 AACACCTTCCTCCGGCGG 62.017 66.667 22.51 22.51 0.00 6.13
4123 4969 2.742372 CAACACCTTCCTCCGGCG 60.742 66.667 0.00 0.00 0.00 6.46
4125 4971 2.351276 CCCAACACCTTCCTCCGG 59.649 66.667 0.00 0.00 0.00 5.14
4144 4990 1.477558 CCATCCACCATGTAGGGCTTC 60.478 57.143 1.29 0.00 43.89 3.86
4189 5035 4.629523 GGTTCGACGGGCCCAACA 62.630 66.667 24.92 0.00 0.00 3.33
4196 5042 2.024590 GATACCCTGGGTTCGACGGG 62.025 65.000 26.00 0.00 42.53 5.28
4197 5043 1.440476 GATACCCTGGGTTCGACGG 59.560 63.158 26.00 0.00 37.09 4.79
4198 5044 1.324740 TGGATACCCTGGGTTCGACG 61.325 60.000 26.00 0.00 37.09 5.12
4199 5045 0.464452 CTGGATACCCTGGGTTCGAC 59.536 60.000 26.00 12.64 37.09 4.20
4200 5046 0.689745 CCTGGATACCCTGGGTTCGA 60.690 60.000 26.00 16.25 45.06 3.71
4201 5047 1.830145 CCTGGATACCCTGGGTTCG 59.170 63.158 26.00 8.02 45.06 3.95
4207 5053 0.397254 AGACGGACCTGGATACCCTG 60.397 60.000 0.00 0.00 0.00 4.45
4208 5054 0.397254 CAGACGGACCTGGATACCCT 60.397 60.000 0.00 0.00 0.00 4.34
4209 5055 2.029307 GCAGACGGACCTGGATACCC 62.029 65.000 0.00 0.00 34.82 3.69
4210 5056 1.442148 GCAGACGGACCTGGATACC 59.558 63.158 0.00 0.00 34.82 2.73
4211 5057 1.043673 AGGCAGACGGACCTGGATAC 61.044 60.000 0.00 0.00 34.07 2.24
4212 5058 0.325296 AAGGCAGACGGACCTGGATA 60.325 55.000 0.00 0.00 36.07 2.59
4213 5059 1.201429 AAAGGCAGACGGACCTGGAT 61.201 55.000 0.00 0.00 36.07 3.41
4214 5060 1.841556 AAAGGCAGACGGACCTGGA 60.842 57.895 0.00 0.00 36.07 3.86
4215 5061 1.672356 CAAAGGCAGACGGACCTGG 60.672 63.158 0.00 0.00 36.07 4.45
4216 5062 0.951040 GACAAAGGCAGACGGACCTG 60.951 60.000 0.00 0.00 36.07 4.00
4217 5063 1.371558 GACAAAGGCAGACGGACCT 59.628 57.895 0.00 0.00 38.14 3.85
4218 5064 1.671379 GGACAAAGGCAGACGGACC 60.671 63.158 0.00 0.00 0.00 4.46
4219 5065 0.606604 TAGGACAAAGGCAGACGGAC 59.393 55.000 0.00 0.00 0.00 4.79
4220 5066 0.895530 CTAGGACAAAGGCAGACGGA 59.104 55.000 0.00 0.00 0.00 4.69
4221 5067 0.108138 CCTAGGACAAAGGCAGACGG 60.108 60.000 1.05 0.00 0.00 4.79
4222 5068 0.108138 CCCTAGGACAAAGGCAGACG 60.108 60.000 11.48 0.00 32.34 4.18
4223 5069 0.393132 GCCCTAGGACAAAGGCAGAC 60.393 60.000 11.48 0.00 45.07 3.51
4224 5070 1.991230 GCCCTAGGACAAAGGCAGA 59.009 57.895 11.48 0.00 45.07 4.26
4225 5071 4.645809 GCCCTAGGACAAAGGCAG 57.354 61.111 11.48 0.00 45.07 4.85
4227 5073 1.745489 CGTGCCCTAGGACAAAGGC 60.745 63.158 11.48 4.21 45.96 4.35
4228 5074 0.391263 GTCGTGCCCTAGGACAAAGG 60.391 60.000 11.48 0.00 42.34 3.11
4229 5075 0.736325 CGTCGTGCCCTAGGACAAAG 60.736 60.000 11.48 2.66 42.79 2.77
4230 5076 1.290955 CGTCGTGCCCTAGGACAAA 59.709 57.895 11.48 0.00 42.79 2.83
4231 5077 2.967397 CGTCGTGCCCTAGGACAA 59.033 61.111 11.48 0.00 42.79 3.18
4232 5078 3.755628 GCGTCGTGCCCTAGGACA 61.756 66.667 11.48 0.28 42.79 4.02
4233 5079 3.077519 ATGCGTCGTGCCCTAGGAC 62.078 63.158 11.48 0.00 45.60 3.85
4234 5080 2.758327 ATGCGTCGTGCCCTAGGA 60.758 61.111 11.48 0.00 45.60 2.94
4235 5081 2.586079 CATGCGTCGTGCCCTAGG 60.586 66.667 0.06 0.06 45.60 3.02
4236 5082 1.878522 GTCATGCGTCGTGCCCTAG 60.879 63.158 0.00 0.00 45.60 3.02
4237 5083 2.183300 GTCATGCGTCGTGCCCTA 59.817 61.111 0.00 0.00 45.60 3.53
4240 5086 2.885644 ATCGTCATGCGTCGTGCC 60.886 61.111 8.91 0.00 45.60 5.01
4241 5087 2.317689 CATCGTCATGCGTCGTGC 59.682 61.111 8.91 0.00 46.70 5.34
4242 5088 2.997869 CCATCGTCATGCGTCGTG 59.002 61.111 8.91 7.14 42.13 4.35
4243 5089 2.885644 GCCATCGTCATGCGTCGT 60.886 61.111 8.91 0.00 42.13 4.34
4244 5090 3.630148 GGCCATCGTCATGCGTCG 61.630 66.667 0.00 4.41 42.13 5.12
4245 5091 3.272334 GGGCCATCGTCATGCGTC 61.272 66.667 4.39 0.00 42.13 5.19
4246 5092 3.620419 TTGGGCCATCGTCATGCGT 62.620 57.895 7.26 0.00 42.13 5.24
4247 5093 2.823593 TTGGGCCATCGTCATGCG 60.824 61.111 7.26 3.55 43.01 4.73
4248 5094 2.800736 GTTGGGCCATCGTCATGC 59.199 61.111 7.26 0.00 0.00 4.06
4249 5095 1.431488 CTCGTTGGGCCATCGTCATG 61.431 60.000 30.01 17.61 0.00 3.07
4250 5096 1.153369 CTCGTTGGGCCATCGTCAT 60.153 57.895 30.01 0.00 0.00 3.06
4251 5097 2.264480 CTCGTTGGGCCATCGTCA 59.736 61.111 30.01 15.49 0.00 4.35
4252 5098 2.100631 CACTCGTTGGGCCATCGTC 61.101 63.158 30.01 11.55 0.00 4.20
4253 5099 2.047274 CACTCGTTGGGCCATCGT 60.047 61.111 30.01 14.24 0.00 3.73
4254 5100 2.819595 CCACTCGTTGGGCCATCG 60.820 66.667 26.94 26.94 42.54 3.84
4262 5108 2.100631 GTCGATGGGCCACTCGTTG 61.101 63.158 26.30 10.91 36.33 4.10
4263 5109 2.107041 TTGTCGATGGGCCACTCGTT 62.107 55.000 26.30 7.20 36.33 3.85
4264 5110 2.507110 CTTGTCGATGGGCCACTCGT 62.507 60.000 26.30 7.56 36.33 4.18
4265 5111 1.811266 CTTGTCGATGGGCCACTCG 60.811 63.158 23.60 23.60 36.25 4.18
4266 5112 2.109126 GCTTGTCGATGGGCCACTC 61.109 63.158 9.28 7.15 0.00 3.51
4267 5113 2.045926 GCTTGTCGATGGGCCACT 60.046 61.111 9.28 0.00 0.00 4.00
4268 5114 1.718757 GATGCTTGTCGATGGGCCAC 61.719 60.000 9.28 1.58 0.00 5.01
4269 5115 1.451927 GATGCTTGTCGATGGGCCA 60.452 57.895 9.61 9.61 0.00 5.36
4270 5116 1.451927 TGATGCTTGTCGATGGGCC 60.452 57.895 0.00 0.00 0.00 5.80
4271 5117 1.026182 TGTGATGCTTGTCGATGGGC 61.026 55.000 0.00 0.00 0.00 5.36
4272 5118 1.131126 GTTGTGATGCTTGTCGATGGG 59.869 52.381 0.00 0.00 0.00 4.00
4273 5119 1.805943 TGTTGTGATGCTTGTCGATGG 59.194 47.619 0.00 0.00 0.00 3.51
4274 5120 3.187022 TCTTGTTGTGATGCTTGTCGATG 59.813 43.478 0.00 0.00 0.00 3.84
4275 5121 3.187227 GTCTTGTTGTGATGCTTGTCGAT 59.813 43.478 0.00 0.00 0.00 3.59
4276 5122 2.543848 GTCTTGTTGTGATGCTTGTCGA 59.456 45.455 0.00 0.00 0.00 4.20
4277 5123 2.545526 AGTCTTGTTGTGATGCTTGTCG 59.454 45.455 0.00 0.00 0.00 4.35
4278 5124 3.058639 GGAGTCTTGTTGTGATGCTTGTC 60.059 47.826 0.00 0.00 0.00 3.18
4279 5125 2.880890 GGAGTCTTGTTGTGATGCTTGT 59.119 45.455 0.00 0.00 0.00 3.16
4280 5126 3.144506 AGGAGTCTTGTTGTGATGCTTG 58.855 45.455 0.00 0.00 0.00 4.01
4281 5127 3.181451 TGAGGAGTCTTGTTGTGATGCTT 60.181 43.478 0.00 0.00 0.00 3.91
4282 5128 2.369860 TGAGGAGTCTTGTTGTGATGCT 59.630 45.455 0.00 0.00 0.00 3.79
4283 5129 2.481952 GTGAGGAGTCTTGTTGTGATGC 59.518 50.000 0.00 0.00 0.00 3.91
4284 5130 2.733552 CGTGAGGAGTCTTGTTGTGATG 59.266 50.000 0.00 0.00 0.00 3.07
4285 5131 2.628178 TCGTGAGGAGTCTTGTTGTGAT 59.372 45.455 0.00 0.00 0.00 3.06
4286 5132 2.028876 TCGTGAGGAGTCTTGTTGTGA 58.971 47.619 0.00 0.00 0.00 3.58
4287 5133 2.398498 CTCGTGAGGAGTCTTGTTGTG 58.602 52.381 0.00 0.00 38.02 3.33
4288 5134 2.802787 CTCGTGAGGAGTCTTGTTGT 57.197 50.000 0.00 0.00 38.02 3.32
4308 5154 4.891037 GATGCCTGCTGAGGGGGC 62.891 72.222 0.00 0.00 45.45 5.80
4309 5155 4.201122 GGATGCCTGCTGAGGGGG 62.201 72.222 0.00 0.00 40.19 5.40
4310 5156 4.201122 GGGATGCCTGCTGAGGGG 62.201 72.222 0.00 0.00 40.19 4.79
4311 5157 4.559063 CGGGATGCCTGCTGAGGG 62.559 72.222 0.28 0.00 40.19 4.30
4312 5158 3.457625 CTCGGGATGCCTGCTGAGG 62.458 68.421 10.87 0.00 41.28 3.86
4313 5159 2.108566 CTCGGGATGCCTGCTGAG 59.891 66.667 5.01 5.01 39.49 3.35
4314 5160 4.166888 GCTCGGGATGCCTGCTGA 62.167 66.667 0.28 0.00 0.00 4.26
4315 5161 4.478371 TGCTCGGGATGCCTGCTG 62.478 66.667 16.35 0.00 0.00 4.41
4316 5162 4.172512 CTGCTCGGGATGCCTGCT 62.173 66.667 16.35 0.00 0.00 4.24
4317 5163 4.166888 TCTGCTCGGGATGCCTGC 62.167 66.667 0.28 6.43 0.00 4.85
4318 5164 2.202987 GTCTGCTCGGGATGCCTG 60.203 66.667 0.28 0.00 0.00 4.85
4319 5165 0.687757 TAAGTCTGCTCGGGATGCCT 60.688 55.000 0.28 0.00 0.00 4.75
4320 5166 0.249657 CTAAGTCTGCTCGGGATGCC 60.250 60.000 0.00 0.00 0.00 4.40
4321 5167 0.878086 GCTAAGTCTGCTCGGGATGC 60.878 60.000 0.00 0.00 0.00 3.91
4322 5168 0.596083 CGCTAAGTCTGCTCGGGATG 60.596 60.000 0.00 0.00 0.00 3.51
4323 5169 1.736586 CGCTAAGTCTGCTCGGGAT 59.263 57.895 0.00 0.00 0.00 3.85
4324 5170 2.415608 CCGCTAAGTCTGCTCGGGA 61.416 63.158 0.00 0.00 36.73 5.14
4325 5171 1.739338 ATCCGCTAAGTCTGCTCGGG 61.739 60.000 0.00 0.00 40.42 5.14
4326 5172 0.318275 GATCCGCTAAGTCTGCTCGG 60.318 60.000 0.00 0.00 41.30 4.63
4327 5173 0.318275 GGATCCGCTAAGTCTGCTCG 60.318 60.000 0.00 0.00 0.00 5.03
4328 5174 0.318275 CGGATCCGCTAAGTCTGCTC 60.318 60.000 23.37 0.00 0.00 4.26
4329 5175 1.736586 CGGATCCGCTAAGTCTGCT 59.263 57.895 23.37 0.00 0.00 4.24
4330 5176 4.327885 CGGATCCGCTAAGTCTGC 57.672 61.111 23.37 0.00 0.00 4.26
4340 5186 3.798954 GAGGCTCTTGGCGGATCCG 62.799 68.421 30.03 30.03 44.18 4.18
4341 5187 2.110006 GAGGCTCTTGGCGGATCC 59.890 66.667 7.40 0.00 44.18 3.36
4342 5188 2.279784 CGAGGCTCTTGGCGGATC 60.280 66.667 13.50 0.00 44.18 3.36
4343 5189 4.537433 GCGAGGCTCTTGGCGGAT 62.537 66.667 13.50 0.00 44.18 4.18
4347 5193 4.135153 TCTCGCGAGGCTCTTGGC 62.135 66.667 33.98 7.86 40.90 4.52
4348 5194 2.202676 GTCTCGCGAGGCTCTTGG 60.203 66.667 32.29 7.47 0.00 3.61
4349 5195 2.881389 AGTCTCGCGAGGCTCTTG 59.119 61.111 36.12 10.37 39.61 3.02
4354 5200 3.894947 GAGGGAGTCTCGCGAGGC 61.895 72.222 32.52 32.52 34.19 4.70
4355 5201 2.438614 TGAGGGAGTCTCGCGAGG 60.439 66.667 33.98 16.82 45.32 4.63
4356 5202 2.795297 GTGAGGGAGTCTCGCGAG 59.205 66.667 30.03 30.03 45.32 5.03
4359 5205 2.766400 CCTCGTGAGGGAGTCTCGC 61.766 68.421 8.09 8.84 45.32 5.03
4360 5206 3.503749 CCTCGTGAGGGAGTCTCG 58.496 66.667 8.09 0.00 45.32 4.04
4369 5215 3.827898 GGGAGACCGCCTCGTGAG 61.828 72.222 0.00 0.00 43.64 3.51
4379 5225 3.020237 GAGGTTGCCTCGGGAGACC 62.020 68.421 0.00 0.00 41.08 3.85
4380 5226 2.579738 GAGGTTGCCTCGGGAGAC 59.420 66.667 0.00 0.00 41.08 3.36
4398 5244 4.323477 TTGACCCGTTGCCTCCGG 62.323 66.667 0.00 0.00 45.07 5.14
4399 5245 2.742372 CTTGACCCGTTGCCTCCG 60.742 66.667 0.00 0.00 0.00 4.63
4400 5246 1.376037 CTCTTGACCCGTTGCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
4401 5247 2.035442 GCTCTTGACCCGTTGCCTC 61.035 63.158 0.00 0.00 0.00 4.70
4402 5248 2.032681 GCTCTTGACCCGTTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
4403 5249 3.056328 GGCTCTTGACCCGTTGCC 61.056 66.667 0.00 0.00 0.00 4.52
4404 5250 3.423154 CGGCTCTTGACCCGTTGC 61.423 66.667 0.00 0.00 39.67 4.17
4409 5255 0.822121 AACCAAACGGCTCTTGACCC 60.822 55.000 0.00 0.00 0.00 4.46
4410 5256 0.591659 GAACCAAACGGCTCTTGACC 59.408 55.000 0.00 0.00 0.00 4.02
4411 5257 0.234884 CGAACCAAACGGCTCTTGAC 59.765 55.000 0.00 0.00 0.00 3.18
4412 5258 0.882927 CCGAACCAAACGGCTCTTGA 60.883 55.000 0.00 0.00 43.74 3.02
4413 5259 1.574428 CCGAACCAAACGGCTCTTG 59.426 57.895 0.00 0.00 43.74 3.02
4414 5260 4.058797 CCGAACCAAACGGCTCTT 57.941 55.556 0.00 0.00 43.74 2.85
4420 5266 2.247267 GTGCGACCGAACCAAACG 59.753 61.111 0.00 0.00 0.00 3.60
4421 5267 2.247267 CGTGCGACCGAACCAAAC 59.753 61.111 0.00 0.00 0.00 2.93
4422 5268 2.968156 CCGTGCGACCGAACCAAA 60.968 61.111 0.00 0.00 0.00 3.28
4423 5269 4.973055 CCCGTGCGACCGAACCAA 62.973 66.667 0.00 0.00 0.00 3.67
4425 5271 4.446413 ATCCCGTGCGACCGAACC 62.446 66.667 0.00 0.00 0.00 3.62
4426 5272 2.884207 GATCCCGTGCGACCGAAC 60.884 66.667 0.00 0.00 0.00 3.95
4427 5273 4.485834 CGATCCCGTGCGACCGAA 62.486 66.667 0.00 0.00 0.00 4.30
4464 5310 3.973267 GACCTCTGTCGCCACTCGC 62.973 68.421 0.00 0.00 38.27 5.03
4465 5311 2.179517 GACCTCTGTCGCCACTCG 59.820 66.667 0.00 0.00 40.15 4.18
4473 5319 0.946221 CTGTTGGCACGACCTCTGTC 60.946 60.000 0.00 0.00 40.22 3.51
4474 5320 1.069765 CTGTTGGCACGACCTCTGT 59.930 57.895 0.00 0.00 40.22 3.41
4475 5321 1.669115 CCTGTTGGCACGACCTCTG 60.669 63.158 0.00 0.00 40.22 3.35
4476 5322 2.743718 CCTGTTGGCACGACCTCT 59.256 61.111 0.00 0.00 40.22 3.69
4486 5332 3.197790 CTCATCCGCGCCTGTTGG 61.198 66.667 0.00 0.00 0.00 3.77
4487 5333 3.197790 CCTCATCCGCGCCTGTTG 61.198 66.667 0.00 0.00 0.00 3.33
4488 5334 3.376935 CTCCTCATCCGCGCCTGTT 62.377 63.158 0.00 0.00 0.00 3.16
4489 5335 3.842923 CTCCTCATCCGCGCCTGT 61.843 66.667 0.00 0.00 0.00 4.00
4490 5336 4.598894 CCTCCTCATCCGCGCCTG 62.599 72.222 0.00 0.00 0.00 4.85
4491 5337 4.841617 TCCTCCTCATCCGCGCCT 62.842 66.667 0.00 0.00 0.00 5.52
4492 5338 2.666596 AAATCCTCCTCATCCGCGCC 62.667 60.000 0.00 0.00 0.00 6.53
4493 5339 1.224722 GAAATCCTCCTCATCCGCGC 61.225 60.000 0.00 0.00 0.00 6.86
4494 5340 0.601311 GGAAATCCTCCTCATCCGCG 60.601 60.000 0.00 0.00 41.61 6.46
4495 5341 3.314083 GGAAATCCTCCTCATCCGC 57.686 57.895 0.00 0.00 41.61 5.54
4506 5352 2.604046 TAGCGCAGAAGAGGAAATCC 57.396 50.000 11.47 0.00 0.00 3.01
4507 5353 2.869192 CCTTAGCGCAGAAGAGGAAATC 59.131 50.000 20.17 0.00 0.00 2.17
4508 5354 2.420687 CCCTTAGCGCAGAAGAGGAAAT 60.421 50.000 20.17 0.00 0.00 2.17
4509 5355 1.066143 CCCTTAGCGCAGAAGAGGAAA 60.066 52.381 20.17 0.00 0.00 3.13
4510 5356 0.537188 CCCTTAGCGCAGAAGAGGAA 59.463 55.000 20.17 0.00 0.00 3.36
4511 5357 0.324368 TCCCTTAGCGCAGAAGAGGA 60.324 55.000 20.17 19.63 0.00 3.71
4512 5358 0.103937 CTCCCTTAGCGCAGAAGAGG 59.896 60.000 20.17 18.13 0.00 3.69
4513 5359 0.529555 GCTCCCTTAGCGCAGAAGAG 60.530 60.000 20.17 14.67 42.53 2.85
4514 5360 1.517832 GCTCCCTTAGCGCAGAAGA 59.482 57.895 20.17 5.49 42.53 2.87
4515 5361 4.116878 GCTCCCTTAGCGCAGAAG 57.883 61.111 11.47 12.77 42.53 2.85
4523 5369 1.452833 GCTGGCCTTGCTCCCTTAG 60.453 63.158 3.32 0.00 0.00 2.18
4524 5370 1.788518 TTGCTGGCCTTGCTCCCTTA 61.789 55.000 19.10 0.00 0.00 2.69
4525 5371 3.150903 TTGCTGGCCTTGCTCCCTT 62.151 57.895 19.10 0.00 0.00 3.95
4526 5372 3.580604 CTTGCTGGCCTTGCTCCCT 62.581 63.158 19.10 0.00 0.00 4.20
4527 5373 3.066814 CTTGCTGGCCTTGCTCCC 61.067 66.667 19.10 0.00 0.00 4.30
4528 5374 3.756727 GCTTGCTGGCCTTGCTCC 61.757 66.667 19.10 6.73 0.00 4.70
4548 5394 1.051556 TTGGGGGTTGCTTTGGGAAC 61.052 55.000 0.00 0.00 41.97 3.62
4549 5395 0.326618 TTTGGGGGTTGCTTTGGGAA 60.327 50.000 0.00 0.00 0.00 3.97
4550 5396 0.762461 CTTTGGGGGTTGCTTTGGGA 60.762 55.000 0.00 0.00 0.00 4.37
4551 5397 1.754107 CTTTGGGGGTTGCTTTGGG 59.246 57.895 0.00 0.00 0.00 4.12
4552 5398 1.053835 ACCTTTGGGGGTTGCTTTGG 61.054 55.000 0.00 0.00 40.03 3.28
4553 5399 0.836606 AACCTTTGGGGGTTGCTTTG 59.163 50.000 0.00 0.00 46.51 2.77
4554 5400 3.333009 AACCTTTGGGGGTTGCTTT 57.667 47.368 0.00 0.00 46.51 3.51
4570 5416 3.039202 CTTGCACCGATCGGGCAAC 62.039 63.158 37.40 25.61 42.29 4.17
4571 5417 2.739849 TTCTTGCACCGATCGGGCAA 62.740 55.000 37.69 37.69 43.71 4.52
4572 5418 3.247056 TTCTTGCACCGATCGGGCA 62.247 57.895 32.90 32.90 40.62 5.36
4573 5419 2.435938 TTCTTGCACCGATCGGGC 60.436 61.111 35.87 32.26 40.62 6.13
4574 5420 1.084370 GTCTTCTTGCACCGATCGGG 61.084 60.000 35.87 25.13 43.62 5.14
4575 5421 1.084370 GGTCTTCTTGCACCGATCGG 61.084 60.000 32.20 32.20 42.03 4.18
4576 5422 0.389817 TGGTCTTCTTGCACCGATCG 60.390 55.000 8.51 8.51 35.15 3.69
4577 5423 1.734465 CTTGGTCTTCTTGCACCGATC 59.266 52.381 0.00 0.00 35.15 3.69
4578 5424 1.347707 TCTTGGTCTTCTTGCACCGAT 59.652 47.619 0.00 0.00 35.15 4.18
4579 5425 0.756294 TCTTGGTCTTCTTGCACCGA 59.244 50.000 0.00 0.00 35.15 4.69
4580 5426 0.868406 GTCTTGGTCTTCTTGCACCG 59.132 55.000 0.00 0.00 35.15 4.94
4581 5427 0.868406 CGTCTTGGTCTTCTTGCACC 59.132 55.000 0.00 0.00 0.00 5.01
4582 5428 1.527311 GTCGTCTTGGTCTTCTTGCAC 59.473 52.381 0.00 0.00 0.00 4.57
4583 5429 1.865865 GTCGTCTTGGTCTTCTTGCA 58.134 50.000 0.00 0.00 0.00 4.08
4584 5430 0.784778 CGTCGTCTTGGTCTTCTTGC 59.215 55.000 0.00 0.00 0.00 4.01
4585 5431 1.419374 CCGTCGTCTTGGTCTTCTTG 58.581 55.000 0.00 0.00 0.00 3.02
4586 5432 0.317479 CCCGTCGTCTTGGTCTTCTT 59.683 55.000 0.00 0.00 0.00 2.52
4587 5433 1.965219 CCCGTCGTCTTGGTCTTCT 59.035 57.895 0.00 0.00 0.00 2.85
4588 5434 1.737008 GCCCGTCGTCTTGGTCTTC 60.737 63.158 0.00 0.00 0.00 2.87
4589 5435 2.342648 GCCCGTCGTCTTGGTCTT 59.657 61.111 0.00 0.00 0.00 3.01
4590 5436 4.052229 CGCCCGTCGTCTTGGTCT 62.052 66.667 0.00 0.00 0.00 3.85
4594 5440 4.764336 TACGCGCCCGTCGTCTTG 62.764 66.667 5.73 0.00 46.39 3.02
4595 5441 4.471726 CTACGCGCCCGTCGTCTT 62.472 66.667 5.73 0.00 46.39 3.01
4597 5443 4.883300 CTCTACGCGCCCGTCGTC 62.883 72.222 5.73 0.00 46.39 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.