Multiple sequence alignment - TraesCS2D01G126700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G126700 chr2D 100.000 6716 0 0 1 6716 73582386 73589101 0.000000e+00 12403.0
1 TraesCS2D01G126700 chr2D 78.049 123 23 4 435 556 474752266 474752385 2.600000e-09 75.0
2 TraesCS2D01G126700 chr2A 93.086 3963 175 48 582 4498 73170053 73173962 0.000000e+00 5709.0
3 TraesCS2D01G126700 chr2A 95.341 2232 59 17 4490 6716 73173985 73176176 0.000000e+00 3504.0
4 TraesCS2D01G126700 chr2B 86.172 998 106 25 418 1399 111657508 111658489 0.000000e+00 1050.0
5 TraesCS2D01G126700 chr2B 90.701 785 53 11 5096 5877 111662490 111663257 0.000000e+00 1027.0
6 TraesCS2D01G126700 chr2B 83.319 1139 134 23 2375 3484 111659555 111660666 0.000000e+00 1000.0
7 TraesCS2D01G126700 chr2B 87.558 860 73 16 3654 4493 111661083 111661928 0.000000e+00 965.0
8 TraesCS2D01G126700 chr2B 90.630 683 54 9 1675 2352 111658818 111659495 0.000000e+00 898.0
9 TraesCS2D01G126700 chr2B 93.750 576 34 2 6141 6716 111663262 111663835 0.000000e+00 863.0
10 TraesCS2D01G126700 chr2B 94.030 536 28 2 4493 5025 111661957 111662491 0.000000e+00 809.0
11 TraesCS2D01G126700 chr2B 85.535 159 21 2 418 575 657063185 657063342 1.500000e-36 165.0
12 TraesCS2D01G126700 chr2B 100.000 30 0 0 5897 5926 111663243 111663272 1.000000e-03 56.5
13 TraesCS2D01G126700 chr5B 89.474 114 11 1 216 329 506323408 506323296 7.020000e-30 143.0
14 TraesCS2D01G126700 chr5D 89.381 113 11 1 216 328 418942218 418942107 2.530000e-29 141.0
15 TraesCS2D01G126700 chr7D 86.325 117 16 0 213 329 113132727 113132843 1.970000e-25 128.0
16 TraesCS2D01G126700 chr7D 86.486 111 14 1 213 322 112948703 112948813 3.290000e-23 121.0
17 TraesCS2D01G126700 chr7D 81.203 133 22 3 418 549 370183834 370183964 3.310000e-18 104.0
18 TraesCS2D01G126700 chr3B 86.441 118 15 1 224 341 225997713 225997597 1.970000e-25 128.0
19 TraesCS2D01G126700 chr3B 93.750 64 4 0 269 332 586726029 586725966 5.540000e-16 97.1
20 TraesCS2D01G126700 chr1A 82.432 148 19 6 422 564 368816325 368816180 9.150000e-24 122.0
21 TraesCS2D01G126700 chr3D 87.379 103 12 1 224 326 155689863 155689964 4.260000e-22 117.0
22 TraesCS2D01G126700 chr1B 81.757 148 20 5 422 564 397438483 397438338 4.260000e-22 117.0
23 TraesCS2D01G126700 chr6A 83.206 131 17 5 211 340 475096713 475096839 1.530000e-21 115.0
24 TraesCS2D01G126700 chr3A 86.538 104 9 4 224 325 174931800 174931900 7.120000e-20 110.0
25 TraesCS2D01G126700 chr7A 81.481 135 19 6 418 549 409872948 409872817 9.210000e-19 106.0
26 TraesCS2D01G126700 chr7B 81.203 133 22 3 418 549 317234649 317234779 3.310000e-18 104.0
27 TraesCS2D01G126700 chrUn 81.890 127 17 6 435 558 22058732 22058855 1.190000e-17 102.0
28 TraesCS2D01G126700 chr1D 88.889 54 4 2 433 485 295971162 295971110 1.560000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G126700 chr2D 73582386 73589101 6715 False 12403.0000 12403 100.0000 1 6716 1 chr2D.!!$F1 6715
1 TraesCS2D01G126700 chr2A 73170053 73176176 6123 False 4606.5000 5709 94.2135 582 6716 2 chr2A.!!$F1 6134
2 TraesCS2D01G126700 chr2B 111657508 111663835 6327 False 833.5625 1050 90.7700 418 6716 8 chr2B.!!$F2 6298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.034337 AGCCAAGCAAACCAGCATTG 59.966 50.000 0.00 0.00 36.85 2.82 F
517 519 0.172352 TGTCATGCTCGCGACACATA 59.828 50.000 16.99 2.71 37.23 2.29 F
881 902 0.178992 TTTTCAGCCTGGACACCTGG 60.179 55.000 0.00 8.95 44.16 4.45 F
1690 1831 0.250295 TTGCTACGCACCTTGAAGCT 60.250 50.000 0.00 0.00 38.71 3.74 F
1697 1838 0.670162 GCACCTTGAAGCTTCAGCAA 59.330 50.000 27.02 13.55 45.16 3.91 F
1811 1956 0.759346 AGTTCGGAGTGAGCAAAGGT 59.241 50.000 0.00 0.00 0.00 3.50 F
2622 2815 1.110442 CTCTAGGGACAGCTGGAGTG 58.890 60.000 19.93 3.12 0.00 3.51 F
3426 3639 2.099098 CAGGGTTCACCGCAAAATATCC 59.901 50.000 0.00 0.00 46.96 2.59 F
5216 5727 3.203487 ACCTTGTAACTTTGTTCCCTCCA 59.797 43.478 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1461 0.104120 CCGGTGATACATCGAAGGCA 59.896 55.000 5.98 0.00 40.81 4.75 R
1445 1478 1.429463 CAAGAAGGAAGACGGAACCG 58.571 55.000 11.83 11.83 46.03 4.44 R
2580 2773 0.968405 GCTTGGCCATTGAAACCTGA 59.032 50.000 6.09 0.00 0.00 3.86 R
3432 3646 2.173569 GGTCAGGAGCTCCCATAACATT 59.826 50.000 29.54 4.94 37.41 2.71 R
3457 3671 3.511934 AGTAGTCTTGAAGCTACACTGGG 59.488 47.826 20.62 0.00 39.82 4.45 R
3494 3708 5.946377 AGAATGAAGTTAACCCTTGATGGTC 59.054 40.000 0.88 0.00 37.76 4.02 R
4161 4631 2.625790 GGTTACACCCATTTGTTCAGCA 59.374 45.455 0.00 0.00 30.04 4.41 R
5325 5836 0.397941 CAGTCTGCAAGGAGTCCCAA 59.602 55.000 5.25 0.00 33.88 4.12 R
6353 6867 2.874052 GCACAGTGGCAGTGGTATACAA 60.874 50.000 25.12 0.00 37.46 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.837532 GAATCCCAAAAGCCAAGCAA 57.162 45.000 0.00 0.00 0.00 3.91
20 21 3.124578 GAATCCCAAAAGCCAAGCAAA 57.875 42.857 0.00 0.00 0.00 3.68
21 22 2.549064 ATCCCAAAAGCCAAGCAAAC 57.451 45.000 0.00 0.00 0.00 2.93
22 23 0.467804 TCCCAAAAGCCAAGCAAACC 59.532 50.000 0.00 0.00 0.00 3.27
23 24 0.179936 CCCAAAAGCCAAGCAAACCA 59.820 50.000 0.00 0.00 0.00 3.67
24 25 1.585297 CCAAAAGCCAAGCAAACCAG 58.415 50.000 0.00 0.00 0.00 4.00
25 26 0.939419 CAAAAGCCAAGCAAACCAGC 59.061 50.000 0.00 0.00 0.00 4.85
26 27 0.540923 AAAAGCCAAGCAAACCAGCA 59.459 45.000 0.00 0.00 36.85 4.41
27 28 0.760572 AAAGCCAAGCAAACCAGCAT 59.239 45.000 0.00 0.00 36.85 3.79
28 29 0.760572 AAGCCAAGCAAACCAGCATT 59.239 45.000 0.00 0.00 36.85 3.56
29 30 0.034337 AGCCAAGCAAACCAGCATTG 59.966 50.000 0.00 0.00 36.85 2.82
42 43 3.093717 CAGCATTGGAGATGGATTTGC 57.906 47.619 0.00 0.00 0.00 3.68
43 44 2.693591 CAGCATTGGAGATGGATTTGCT 59.306 45.455 0.00 0.00 39.38 3.91
44 45 3.132289 CAGCATTGGAGATGGATTTGCTT 59.868 43.478 0.00 0.00 36.87 3.91
45 46 3.383825 AGCATTGGAGATGGATTTGCTTC 59.616 43.478 0.00 0.00 35.57 3.86
46 47 3.383825 GCATTGGAGATGGATTTGCTTCT 59.616 43.478 0.00 0.00 0.00 2.85
47 48 4.142004 GCATTGGAGATGGATTTGCTTCTT 60.142 41.667 0.00 0.00 0.00 2.52
48 49 5.589192 CATTGGAGATGGATTTGCTTCTTC 58.411 41.667 0.00 0.00 0.00 2.87
49 50 4.581309 TGGAGATGGATTTGCTTCTTCT 57.419 40.909 0.00 0.00 0.00 2.85
50 51 4.927049 TGGAGATGGATTTGCTTCTTCTT 58.073 39.130 0.00 0.00 0.00 2.52
51 52 4.703575 TGGAGATGGATTTGCTTCTTCTTG 59.296 41.667 0.00 0.00 0.00 3.02
52 53 4.704057 GGAGATGGATTTGCTTCTTCTTGT 59.296 41.667 0.00 0.00 0.00 3.16
53 54 5.184671 GGAGATGGATTTGCTTCTTCTTGTT 59.815 40.000 0.00 0.00 0.00 2.83
54 55 6.294955 GGAGATGGATTTGCTTCTTCTTGTTT 60.295 38.462 0.00 0.00 0.00 2.83
55 56 6.685657 AGATGGATTTGCTTCTTCTTGTTTC 58.314 36.000 0.00 0.00 0.00 2.78
56 57 4.858935 TGGATTTGCTTCTTCTTGTTTCG 58.141 39.130 0.00 0.00 0.00 3.46
57 58 4.578516 TGGATTTGCTTCTTCTTGTTTCGA 59.421 37.500 0.00 0.00 0.00 3.71
58 59 5.149977 GGATTTGCTTCTTCTTGTTTCGAG 58.850 41.667 0.00 0.00 0.00 4.04
59 60 5.049405 GGATTTGCTTCTTCTTGTTTCGAGA 60.049 40.000 0.00 0.00 0.00 4.04
60 61 5.811399 TTTGCTTCTTCTTGTTTCGAGAA 57.189 34.783 0.00 0.45 33.40 2.87
61 62 6.377327 TTTGCTTCTTCTTGTTTCGAGAAT 57.623 33.333 0.70 0.00 33.92 2.40
62 63 7.490962 TTTGCTTCTTCTTGTTTCGAGAATA 57.509 32.000 0.70 0.00 33.92 1.75
63 64 7.672983 TTGCTTCTTCTTGTTTCGAGAATAT 57.327 32.000 0.70 0.00 33.92 1.28
64 65 7.672983 TGCTTCTTCTTGTTTCGAGAATATT 57.327 32.000 0.00 0.00 33.92 1.28
65 66 7.521529 TGCTTCTTCTTGTTTCGAGAATATTG 58.478 34.615 0.00 0.00 33.92 1.90
66 67 6.963805 GCTTCTTCTTGTTTCGAGAATATTGG 59.036 38.462 0.00 0.00 33.92 3.16
67 68 7.148407 GCTTCTTCTTGTTTCGAGAATATTGGA 60.148 37.037 0.00 0.00 33.92 3.53
68 69 7.834068 TCTTCTTGTTTCGAGAATATTGGAG 57.166 36.000 0.00 0.00 33.92 3.86
69 70 6.818644 TCTTCTTGTTTCGAGAATATTGGAGG 59.181 38.462 0.00 0.00 33.92 4.30
70 71 6.049955 TCTTGTTTCGAGAATATTGGAGGT 57.950 37.500 0.00 0.00 0.00 3.85
71 72 5.874810 TCTTGTTTCGAGAATATTGGAGGTG 59.125 40.000 0.00 0.00 0.00 4.00
72 73 4.513442 TGTTTCGAGAATATTGGAGGTGG 58.487 43.478 0.00 0.00 0.00 4.61
73 74 2.910688 TCGAGAATATTGGAGGTGGC 57.089 50.000 0.00 0.00 0.00 5.01
74 75 2.398588 TCGAGAATATTGGAGGTGGCT 58.601 47.619 0.00 0.00 0.00 4.75
75 76 2.365617 TCGAGAATATTGGAGGTGGCTC 59.634 50.000 0.00 0.00 0.00 4.70
76 77 2.103094 CGAGAATATTGGAGGTGGCTCA 59.897 50.000 0.00 0.00 0.00 4.26
77 78 3.471680 GAGAATATTGGAGGTGGCTCAC 58.528 50.000 0.00 0.00 0.00 3.51
78 79 3.118531 AGAATATTGGAGGTGGCTCACT 58.881 45.455 0.00 0.00 34.40 3.41
79 80 4.298626 AGAATATTGGAGGTGGCTCACTA 58.701 43.478 0.00 0.00 34.40 2.74
80 81 4.721776 AGAATATTGGAGGTGGCTCACTAA 59.278 41.667 0.00 0.00 34.40 2.24
81 82 4.696479 ATATTGGAGGTGGCTCACTAAG 57.304 45.455 5.48 0.00 34.40 2.18
82 83 2.024176 TTGGAGGTGGCTCACTAAGA 57.976 50.000 5.48 0.00 34.40 2.10
83 84 2.254152 TGGAGGTGGCTCACTAAGAT 57.746 50.000 5.48 0.00 34.40 2.40
84 85 2.551270 TGGAGGTGGCTCACTAAGATT 58.449 47.619 5.48 0.00 34.40 2.40
85 86 2.912956 TGGAGGTGGCTCACTAAGATTT 59.087 45.455 5.48 0.00 34.40 2.17
86 87 3.055094 TGGAGGTGGCTCACTAAGATTTC 60.055 47.826 5.48 0.00 34.40 2.17
87 88 3.055094 GGAGGTGGCTCACTAAGATTTCA 60.055 47.826 5.48 0.00 34.40 2.69
88 89 4.187694 GAGGTGGCTCACTAAGATTTCAG 58.812 47.826 5.48 0.00 34.40 3.02
89 90 3.054802 AGGTGGCTCACTAAGATTTCAGG 60.055 47.826 5.48 0.00 34.40 3.86
90 91 3.055094 GGTGGCTCACTAAGATTTCAGGA 60.055 47.826 5.48 0.00 34.40 3.86
91 92 4.187694 GTGGCTCACTAAGATTTCAGGAG 58.812 47.826 0.00 0.00 0.00 3.69
92 93 4.081420 GTGGCTCACTAAGATTTCAGGAGA 60.081 45.833 0.00 0.00 0.00 3.71
93 94 4.081420 TGGCTCACTAAGATTTCAGGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
94 95 4.161377 GGCTCACTAAGATTTCAGGAGACT 59.839 45.833 0.00 0.00 46.44 3.24
95 96 5.337975 GGCTCACTAAGATTTCAGGAGACTT 60.338 44.000 0.00 0.00 40.21 3.01
96 97 5.810074 GCTCACTAAGATTTCAGGAGACTTC 59.190 44.000 0.00 0.00 40.21 3.01
97 98 6.350949 GCTCACTAAGATTTCAGGAGACTTCT 60.351 42.308 0.00 0.00 40.21 2.85
98 99 7.546250 TCACTAAGATTTCAGGAGACTTCTT 57.454 36.000 0.00 0.00 40.21 2.52
99 100 7.382110 TCACTAAGATTTCAGGAGACTTCTTG 58.618 38.462 0.00 0.00 40.21 3.02
100 101 7.015682 TCACTAAGATTTCAGGAGACTTCTTGT 59.984 37.037 0.00 0.00 40.21 3.16
101 102 7.117523 CACTAAGATTTCAGGAGACTTCTTGTG 59.882 40.741 0.00 0.00 40.21 3.33
102 103 5.559148 AGATTTCAGGAGACTTCTTGTGT 57.441 39.130 0.00 0.00 40.21 3.72
103 104 6.672266 AGATTTCAGGAGACTTCTTGTGTA 57.328 37.500 0.00 0.00 40.21 2.90
104 105 6.696411 AGATTTCAGGAGACTTCTTGTGTAG 58.304 40.000 0.00 0.00 40.21 2.74
105 106 5.871396 TTTCAGGAGACTTCTTGTGTAGT 57.129 39.130 0.00 0.00 40.21 2.73
106 107 6.971726 TTTCAGGAGACTTCTTGTGTAGTA 57.028 37.500 0.00 0.00 40.21 1.82
107 108 6.971726 TTCAGGAGACTTCTTGTGTAGTAA 57.028 37.500 0.00 0.00 40.21 2.24
108 109 6.328641 TCAGGAGACTTCTTGTGTAGTAAC 57.671 41.667 0.00 0.00 40.21 2.50
109 110 5.831525 TCAGGAGACTTCTTGTGTAGTAACA 59.168 40.000 0.00 0.00 40.21 2.41
110 111 6.493802 TCAGGAGACTTCTTGTGTAGTAACAT 59.506 38.462 0.00 0.00 40.21 2.71
111 112 6.587990 CAGGAGACTTCTTGTGTAGTAACATG 59.412 42.308 0.00 0.00 40.21 3.21
112 113 5.348997 GGAGACTTCTTGTGTAGTAACATGC 59.651 44.000 0.00 0.00 38.08 4.06
113 114 5.853936 AGACTTCTTGTGTAGTAACATGCA 58.146 37.500 0.00 0.00 38.08 3.96
114 115 6.467677 AGACTTCTTGTGTAGTAACATGCAT 58.532 36.000 0.00 0.00 38.08 3.96
115 116 6.936900 AGACTTCTTGTGTAGTAACATGCATT 59.063 34.615 0.00 0.00 38.08 3.56
116 117 7.445402 AGACTTCTTGTGTAGTAACATGCATTT 59.555 33.333 0.00 0.00 38.08 2.32
117 118 7.362662 ACTTCTTGTGTAGTAACATGCATTTG 58.637 34.615 0.00 0.00 38.08 2.32
118 119 5.698832 TCTTGTGTAGTAACATGCATTTGC 58.301 37.500 0.00 0.00 38.08 3.68
131 132 3.396260 GCATTTGCAGGCCATGATATT 57.604 42.857 5.01 0.00 41.59 1.28
132 133 3.735591 GCATTTGCAGGCCATGATATTT 58.264 40.909 5.01 0.00 41.59 1.40
133 134 4.131596 GCATTTGCAGGCCATGATATTTT 58.868 39.130 5.01 0.00 41.59 1.82
134 135 4.577283 GCATTTGCAGGCCATGATATTTTT 59.423 37.500 5.01 0.00 41.59 1.94
155 156 6.418057 TTTTTCATGCTTGAGGTAATTGGT 57.582 33.333 2.23 0.00 32.27 3.67
156 157 5.643379 TTTCATGCTTGAGGTAATTGGTC 57.357 39.130 2.23 0.00 32.27 4.02
157 158 3.270027 TCATGCTTGAGGTAATTGGTCG 58.730 45.455 0.00 0.00 0.00 4.79
158 159 2.851263 TGCTTGAGGTAATTGGTCGT 57.149 45.000 0.00 0.00 0.00 4.34
159 160 3.134574 TGCTTGAGGTAATTGGTCGTT 57.865 42.857 0.00 0.00 0.00 3.85
160 161 3.482436 TGCTTGAGGTAATTGGTCGTTT 58.518 40.909 0.00 0.00 0.00 3.60
161 162 3.500680 TGCTTGAGGTAATTGGTCGTTTC 59.499 43.478 0.00 0.00 0.00 2.78
162 163 3.751698 GCTTGAGGTAATTGGTCGTTTCT 59.248 43.478 0.00 0.00 0.00 2.52
163 164 4.142881 GCTTGAGGTAATTGGTCGTTTCTC 60.143 45.833 0.00 0.00 0.00 2.87
164 165 4.884668 TGAGGTAATTGGTCGTTTCTCT 57.115 40.909 0.00 0.00 0.00 3.10
165 166 5.223449 TGAGGTAATTGGTCGTTTCTCTT 57.777 39.130 0.00 0.00 0.00 2.85
166 167 5.617252 TGAGGTAATTGGTCGTTTCTCTTT 58.383 37.500 0.00 0.00 0.00 2.52
167 168 5.468746 TGAGGTAATTGGTCGTTTCTCTTTG 59.531 40.000 0.00 0.00 0.00 2.77
168 169 4.760204 AGGTAATTGGTCGTTTCTCTTTGG 59.240 41.667 0.00 0.00 0.00 3.28
169 170 3.643159 AATTGGTCGTTTCTCTTTGGC 57.357 42.857 0.00 0.00 0.00 4.52
170 171 2.045561 TTGGTCGTTTCTCTTTGGCA 57.954 45.000 0.00 0.00 0.00 4.92
171 172 2.270352 TGGTCGTTTCTCTTTGGCAT 57.730 45.000 0.00 0.00 0.00 4.40
172 173 2.582052 TGGTCGTTTCTCTTTGGCATT 58.418 42.857 0.00 0.00 0.00 3.56
173 174 2.955660 TGGTCGTTTCTCTTTGGCATTT 59.044 40.909 0.00 0.00 0.00 2.32
174 175 3.383185 TGGTCGTTTCTCTTTGGCATTTT 59.617 39.130 0.00 0.00 0.00 1.82
175 176 3.735746 GGTCGTTTCTCTTTGGCATTTTG 59.264 43.478 0.00 0.00 0.00 2.44
176 177 4.499019 GGTCGTTTCTCTTTGGCATTTTGA 60.499 41.667 0.00 0.00 0.00 2.69
177 178 4.441087 GTCGTTTCTCTTTGGCATTTTGAC 59.559 41.667 0.00 0.00 0.00 3.18
178 179 4.097135 TCGTTTCTCTTTGGCATTTTGACA 59.903 37.500 0.00 0.00 30.30 3.58
179 180 4.984161 CGTTTCTCTTTGGCATTTTGACAT 59.016 37.500 0.00 0.00 33.90 3.06
180 181 5.117592 CGTTTCTCTTTGGCATTTTGACATC 59.882 40.000 0.00 0.00 33.90 3.06
181 182 5.787953 TTCTCTTTGGCATTTTGACATCA 57.212 34.783 0.00 0.00 33.90 3.07
182 183 5.988310 TCTCTTTGGCATTTTGACATCAT 57.012 34.783 0.00 0.00 33.90 2.45
183 184 6.349243 TCTCTTTGGCATTTTGACATCATT 57.651 33.333 0.00 0.00 33.90 2.57
184 185 6.761312 TCTCTTTGGCATTTTGACATCATTT 58.239 32.000 0.00 0.00 33.90 2.32
185 186 7.218614 TCTCTTTGGCATTTTGACATCATTTT 58.781 30.769 0.00 0.00 33.90 1.82
186 187 7.716123 TCTCTTTGGCATTTTGACATCATTTTT 59.284 29.630 0.00 0.00 33.90 1.94
187 188 8.899427 TCTTTGGCATTTTGACATCATTTTTA 57.101 26.923 0.00 0.00 33.90 1.52
188 189 8.772705 TCTTTGGCATTTTGACATCATTTTTAC 58.227 29.630 0.00 0.00 33.90 2.01
189 190 8.674263 TTTGGCATTTTGACATCATTTTTACT 57.326 26.923 0.00 0.00 33.90 2.24
190 191 8.674263 TTGGCATTTTGACATCATTTTTACTT 57.326 26.923 0.00 0.00 33.90 2.24
191 192 8.674263 TGGCATTTTGACATCATTTTTACTTT 57.326 26.923 0.00 0.00 24.43 2.66
192 193 9.770097 TGGCATTTTGACATCATTTTTACTTTA 57.230 25.926 0.00 0.00 24.43 1.85
221 222 4.388577 AAAAATCCCCTAGAGTTGTGCT 57.611 40.909 0.00 0.00 31.94 4.40
222 223 4.388577 AAAATCCCCTAGAGTTGTGCTT 57.611 40.909 0.00 0.00 31.94 3.91
223 224 4.388577 AAATCCCCTAGAGTTGTGCTTT 57.611 40.909 0.00 0.00 29.94 3.51
224 225 4.388577 AATCCCCTAGAGTTGTGCTTTT 57.611 40.909 0.00 0.00 0.00 2.27
225 226 3.876309 TCCCCTAGAGTTGTGCTTTTT 57.124 42.857 0.00 0.00 0.00 1.94
226 227 3.486383 TCCCCTAGAGTTGTGCTTTTTG 58.514 45.455 0.00 0.00 0.00 2.44
227 228 3.117663 TCCCCTAGAGTTGTGCTTTTTGT 60.118 43.478 0.00 0.00 0.00 2.83
228 229 3.636764 CCCCTAGAGTTGTGCTTTTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
229 230 4.825085 CCCCTAGAGTTGTGCTTTTTGTTA 59.175 41.667 0.00 0.00 0.00 2.41
230 231 5.278315 CCCCTAGAGTTGTGCTTTTTGTTAC 60.278 44.000 0.00 0.00 0.00 2.50
231 232 5.278315 CCCTAGAGTTGTGCTTTTTGTTACC 60.278 44.000 0.00 0.00 0.00 2.85
232 233 5.298276 CCTAGAGTTGTGCTTTTTGTTACCA 59.702 40.000 0.00 0.00 0.00 3.25
233 234 5.652994 AGAGTTGTGCTTTTTGTTACCAA 57.347 34.783 0.00 0.00 0.00 3.67
234 235 6.220726 AGAGTTGTGCTTTTTGTTACCAAT 57.779 33.333 0.00 0.00 0.00 3.16
235 236 6.639563 AGAGTTGTGCTTTTTGTTACCAATT 58.360 32.000 0.00 0.00 0.00 2.32
236 237 7.777095 AGAGTTGTGCTTTTTGTTACCAATTA 58.223 30.769 0.00 0.00 0.00 1.40
237 238 7.920682 AGAGTTGTGCTTTTTGTTACCAATTAG 59.079 33.333 0.00 0.00 0.00 1.73
238 239 7.552459 AGTTGTGCTTTTTGTTACCAATTAGT 58.448 30.769 0.00 0.00 0.00 2.24
239 240 7.704899 AGTTGTGCTTTTTGTTACCAATTAGTC 59.295 33.333 0.00 0.00 0.00 2.59
240 241 6.508777 TGTGCTTTTTGTTACCAATTAGTCC 58.491 36.000 0.00 0.00 0.00 3.85
241 242 6.322712 TGTGCTTTTTGTTACCAATTAGTCCT 59.677 34.615 0.00 0.00 0.00 3.85
242 243 7.502895 TGTGCTTTTTGTTACCAATTAGTCCTA 59.497 33.333 0.00 0.00 0.00 2.94
243 244 8.021396 GTGCTTTTTGTTACCAATTAGTCCTAG 58.979 37.037 0.00 0.00 0.00 3.02
244 245 7.940137 TGCTTTTTGTTACCAATTAGTCCTAGA 59.060 33.333 0.00 0.00 0.00 2.43
245 246 8.451748 GCTTTTTGTTACCAATTAGTCCTAGAG 58.548 37.037 0.00 0.00 0.00 2.43
246 247 9.503399 CTTTTTGTTACCAATTAGTCCTAGAGT 57.497 33.333 0.00 0.00 0.00 3.24
247 248 9.498176 TTTTTGTTACCAATTAGTCCTAGAGTC 57.502 33.333 0.00 0.00 0.00 3.36
248 249 7.786046 TTGTTACCAATTAGTCCTAGAGTCA 57.214 36.000 0.00 0.00 0.00 3.41
249 250 7.973048 TGTTACCAATTAGTCCTAGAGTCAT 57.027 36.000 0.00 0.00 0.00 3.06
250 251 7.782049 TGTTACCAATTAGTCCTAGAGTCATG 58.218 38.462 0.00 0.00 0.00 3.07
251 252 5.878406 ACCAATTAGTCCTAGAGTCATGG 57.122 43.478 0.00 0.00 0.00 3.66
252 253 5.281314 ACCAATTAGTCCTAGAGTCATGGT 58.719 41.667 0.00 0.00 0.00 3.55
253 254 5.726793 ACCAATTAGTCCTAGAGTCATGGTT 59.273 40.000 0.00 0.00 0.00 3.67
254 255 6.215636 ACCAATTAGTCCTAGAGTCATGGTTT 59.784 38.462 0.00 0.00 0.00 3.27
255 256 7.112779 CCAATTAGTCCTAGAGTCATGGTTTT 58.887 38.462 0.00 0.00 0.00 2.43
256 257 7.281100 CCAATTAGTCCTAGAGTCATGGTTTTC 59.719 40.741 0.00 0.00 0.00 2.29
257 258 7.741554 ATTAGTCCTAGAGTCATGGTTTTCT 57.258 36.000 0.00 0.00 0.00 2.52
258 259 5.413309 AGTCCTAGAGTCATGGTTTTCTG 57.587 43.478 0.00 0.00 0.00 3.02
259 260 4.841246 AGTCCTAGAGTCATGGTTTTCTGT 59.159 41.667 0.00 0.00 0.00 3.41
260 261 5.308237 AGTCCTAGAGTCATGGTTTTCTGTT 59.692 40.000 0.00 0.00 0.00 3.16
261 262 6.497259 AGTCCTAGAGTCATGGTTTTCTGTTA 59.503 38.462 0.00 0.00 0.00 2.41
262 263 7.016268 AGTCCTAGAGTCATGGTTTTCTGTTAA 59.984 37.037 0.00 0.00 0.00 2.01
263 264 7.660208 GTCCTAGAGTCATGGTTTTCTGTTAAA 59.340 37.037 0.00 0.00 0.00 1.52
264 265 8.215050 TCCTAGAGTCATGGTTTTCTGTTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
265 266 9.014297 CCTAGAGTCATGGTTTTCTGTTAAAAT 57.986 33.333 0.00 0.00 0.00 1.82
267 268 7.886338 AGAGTCATGGTTTTCTGTTAAAATCC 58.114 34.615 0.00 0.00 0.00 3.01
268 269 6.993079 AGTCATGGTTTTCTGTTAAAATCCC 58.007 36.000 0.00 0.00 30.22 3.85
269 270 6.014584 AGTCATGGTTTTCTGTTAAAATCCCC 60.015 38.462 0.00 0.00 30.22 4.81
270 271 6.014584 GTCATGGTTTTCTGTTAAAATCCCCT 60.015 38.462 0.00 0.00 30.22 4.79
271 272 7.177744 GTCATGGTTTTCTGTTAAAATCCCCTA 59.822 37.037 0.00 0.00 30.22 3.53
272 273 7.396055 TCATGGTTTTCTGTTAAAATCCCCTAG 59.604 37.037 0.00 0.00 30.22 3.02
273 274 6.854578 TGGTTTTCTGTTAAAATCCCCTAGA 58.145 36.000 0.00 0.00 30.22 2.43
274 275 6.946009 TGGTTTTCTGTTAAAATCCCCTAGAG 59.054 38.462 0.00 0.00 30.22 2.43
275 276 6.946583 GGTTTTCTGTTAAAATCCCCTAGAGT 59.053 38.462 0.00 0.00 0.00 3.24
276 277 7.450634 GGTTTTCTGTTAAAATCCCCTAGAGTT 59.549 37.037 0.00 0.00 33.23 3.01
277 278 7.996098 TTTCTGTTAAAATCCCCTAGAGTTG 57.004 36.000 0.00 0.00 31.94 3.16
278 279 6.697641 TCTGTTAAAATCCCCTAGAGTTGT 57.302 37.500 0.00 0.00 31.94 3.32
279 280 6.472887 TCTGTTAAAATCCCCTAGAGTTGTG 58.527 40.000 0.00 0.00 31.94 3.33
280 281 5.566469 TGTTAAAATCCCCTAGAGTTGTGG 58.434 41.667 0.00 0.00 31.94 4.17
281 282 5.073965 TGTTAAAATCCCCTAGAGTTGTGGT 59.926 40.000 0.00 0.00 31.94 4.16
282 283 4.741928 AAAATCCCCTAGAGTTGTGGTT 57.258 40.909 0.00 0.00 31.94 3.67
283 284 4.741928 AAATCCCCTAGAGTTGTGGTTT 57.258 40.909 0.00 0.00 29.94 3.27
284 285 4.741928 AATCCCCTAGAGTTGTGGTTTT 57.258 40.909 0.00 0.00 0.00 2.43
285 286 3.502123 TCCCCTAGAGTTGTGGTTTTG 57.498 47.619 0.00 0.00 0.00 2.44
286 287 2.781174 TCCCCTAGAGTTGTGGTTTTGT 59.219 45.455 0.00 0.00 0.00 2.83
287 288 2.884639 CCCCTAGAGTTGTGGTTTTGTG 59.115 50.000 0.00 0.00 0.00 3.33
288 289 3.551846 CCCTAGAGTTGTGGTTTTGTGT 58.448 45.455 0.00 0.00 0.00 3.72
289 290 3.951680 CCCTAGAGTTGTGGTTTTGTGTT 59.048 43.478 0.00 0.00 0.00 3.32
290 291 5.127491 CCCTAGAGTTGTGGTTTTGTGTTA 58.873 41.667 0.00 0.00 0.00 2.41
291 292 5.591067 CCCTAGAGTTGTGGTTTTGTGTTAA 59.409 40.000 0.00 0.00 0.00 2.01
292 293 6.459161 CCCTAGAGTTGTGGTTTTGTGTTAAC 60.459 42.308 0.00 0.00 0.00 2.01
293 294 6.317893 CCTAGAGTTGTGGTTTTGTGTTAACT 59.682 38.462 7.22 0.00 0.00 2.24
294 295 6.190954 AGAGTTGTGGTTTTGTGTTAACTC 57.809 37.500 7.22 3.79 41.53 3.01
295 296 5.124936 AGAGTTGTGGTTTTGTGTTAACTCC 59.875 40.000 7.22 0.00 41.93 3.85
296 297 4.099824 GTTGTGGTTTTGTGTTAACTCCG 58.900 43.478 7.22 0.00 0.00 4.63
297 298 2.097791 TGTGGTTTTGTGTTAACTCCGC 59.902 45.455 7.22 7.03 0.00 5.54
298 299 1.677052 TGGTTTTGTGTTAACTCCGCC 59.323 47.619 7.22 4.08 0.00 6.13
299 300 1.001048 GGTTTTGTGTTAACTCCGCCC 60.001 52.381 7.22 0.00 0.00 6.13
300 301 1.001048 GTTTTGTGTTAACTCCGCCCC 60.001 52.381 7.22 0.00 0.00 5.80
301 302 0.183014 TTTGTGTTAACTCCGCCCCA 59.817 50.000 7.22 0.00 0.00 4.96
302 303 0.183014 TTGTGTTAACTCCGCCCCAA 59.817 50.000 7.22 0.00 0.00 4.12
303 304 0.183014 TGTGTTAACTCCGCCCCAAA 59.817 50.000 7.22 0.00 0.00 3.28
304 305 1.320507 GTGTTAACTCCGCCCCAAAA 58.679 50.000 7.22 0.00 0.00 2.44
305 306 1.268625 GTGTTAACTCCGCCCCAAAAG 59.731 52.381 7.22 0.00 0.00 2.27
306 307 1.133730 TGTTAACTCCGCCCCAAAAGT 60.134 47.619 7.22 0.00 0.00 2.66
307 308 1.958579 GTTAACTCCGCCCCAAAAGTT 59.041 47.619 0.00 0.00 36.09 2.66
308 309 1.611519 TAACTCCGCCCCAAAAGTTG 58.388 50.000 0.00 0.00 34.09 3.16
309 310 0.396556 AACTCCGCCCCAAAAGTTGT 60.397 50.000 0.00 0.00 31.05 3.32
310 311 1.106944 ACTCCGCCCCAAAAGTTGTG 61.107 55.000 0.00 0.00 0.00 3.33
311 312 1.076632 TCCGCCCCAAAAGTTGTGT 60.077 52.632 0.00 0.00 0.00 3.72
312 313 0.183014 TCCGCCCCAAAAGTTGTGTA 59.817 50.000 0.00 0.00 0.00 2.90
313 314 1.202952 TCCGCCCCAAAAGTTGTGTAT 60.203 47.619 0.00 0.00 0.00 2.29
314 315 1.616374 CCGCCCCAAAAGTTGTGTATT 59.384 47.619 0.00 0.00 0.00 1.89
315 316 2.036604 CCGCCCCAAAAGTTGTGTATTT 59.963 45.455 0.00 0.00 0.00 1.40
316 317 3.056304 CGCCCCAAAAGTTGTGTATTTG 58.944 45.455 0.00 0.00 34.60 2.32
317 318 3.491792 CGCCCCAAAAGTTGTGTATTTGT 60.492 43.478 0.00 0.00 33.31 2.83
318 319 3.807071 GCCCCAAAAGTTGTGTATTTGTG 59.193 43.478 0.00 0.00 33.31 3.33
319 320 3.807071 CCCCAAAAGTTGTGTATTTGTGC 59.193 43.478 0.00 0.00 33.31 4.57
320 321 4.437239 CCCAAAAGTTGTGTATTTGTGCA 58.563 39.130 0.00 0.00 33.31 4.57
321 322 4.872691 CCCAAAAGTTGTGTATTTGTGCAA 59.127 37.500 0.00 0.00 33.31 4.08
322 323 5.526846 CCCAAAAGTTGTGTATTTGTGCAAT 59.473 36.000 0.00 0.00 33.31 3.56
323 324 6.038050 CCCAAAAGTTGTGTATTTGTGCAATT 59.962 34.615 0.00 0.00 33.31 2.32
324 325 7.414984 CCCAAAAGTTGTGTATTTGTGCAATTT 60.415 33.333 0.00 0.00 33.31 1.82
325 326 7.639461 CCAAAAGTTGTGTATTTGTGCAATTTC 59.361 33.333 0.00 0.00 33.31 2.17
326 327 6.843069 AAGTTGTGTATTTGTGCAATTTCC 57.157 33.333 0.00 0.00 0.00 3.13
327 328 6.160576 AGTTGTGTATTTGTGCAATTTCCT 57.839 33.333 0.00 0.00 0.00 3.36
328 329 6.215845 AGTTGTGTATTTGTGCAATTTCCTC 58.784 36.000 0.00 0.00 0.00 3.71
329 330 5.132897 TGTGTATTTGTGCAATTTCCTCC 57.867 39.130 0.00 0.00 0.00 4.30
330 331 4.586421 TGTGTATTTGTGCAATTTCCTCCA 59.414 37.500 0.00 0.00 0.00 3.86
331 332 5.245751 TGTGTATTTGTGCAATTTCCTCCAT 59.754 36.000 0.00 0.00 0.00 3.41
332 333 6.165577 GTGTATTTGTGCAATTTCCTCCATT 58.834 36.000 0.00 0.00 0.00 3.16
333 334 7.039434 TGTGTATTTGTGCAATTTCCTCCATTA 60.039 33.333 0.00 0.00 0.00 1.90
334 335 7.816995 GTGTATTTGTGCAATTTCCTCCATTAA 59.183 33.333 0.00 0.00 0.00 1.40
335 336 8.370940 TGTATTTGTGCAATTTCCTCCATTAAA 58.629 29.630 0.00 0.00 0.00 1.52
336 337 9.213799 GTATTTGTGCAATTTCCTCCATTAAAA 57.786 29.630 0.00 0.00 0.00 1.52
337 338 8.688747 ATTTGTGCAATTTCCTCCATTAAAAA 57.311 26.923 0.00 0.00 0.00 1.94
392 393 6.460664 AAAAATTGACGCCGGATTTTTAAG 57.539 33.333 17.35 0.00 39.71 1.85
393 394 2.622546 TTGACGCCGGATTTTTAAGC 57.377 45.000 5.05 0.00 0.00 3.09
394 395 1.524848 TGACGCCGGATTTTTAAGCA 58.475 45.000 5.05 0.00 0.00 3.91
395 396 2.088423 TGACGCCGGATTTTTAAGCAT 58.912 42.857 5.05 0.00 0.00 3.79
396 397 2.159448 TGACGCCGGATTTTTAAGCATG 60.159 45.455 5.05 0.00 0.00 4.06
397 398 1.134175 ACGCCGGATTTTTAAGCATGG 59.866 47.619 5.05 0.00 0.00 3.66
398 399 1.134175 CGCCGGATTTTTAAGCATGGT 59.866 47.619 5.05 0.00 0.00 3.55
399 400 2.356382 CGCCGGATTTTTAAGCATGGTA 59.644 45.455 5.05 0.00 0.00 3.25
400 401 3.181495 CGCCGGATTTTTAAGCATGGTAA 60.181 43.478 5.05 0.00 0.00 2.85
401 402 4.675671 CGCCGGATTTTTAAGCATGGTAAA 60.676 41.667 5.05 0.00 0.00 2.01
402 403 4.565166 GCCGGATTTTTAAGCATGGTAAAC 59.435 41.667 5.05 0.00 0.00 2.01
403 404 5.106442 CCGGATTTTTAAGCATGGTAAACC 58.894 41.667 0.00 0.00 0.00 3.27
404 405 4.796312 CGGATTTTTAAGCATGGTAAACCG 59.204 41.667 10.97 10.97 39.43 4.44
405 406 5.106442 GGATTTTTAAGCATGGTAAACCGG 58.894 41.667 0.00 0.00 39.43 5.28
406 407 5.105675 GGATTTTTAAGCATGGTAAACCGGA 60.106 40.000 9.46 0.00 39.43 5.14
407 408 5.786264 TTTTTAAGCATGGTAAACCGGAA 57.214 34.783 9.46 0.00 39.43 4.30
408 409 5.379732 TTTTAAGCATGGTAAACCGGAAG 57.620 39.130 9.46 0.00 39.43 3.46
409 410 2.579410 AAGCATGGTAAACCGGAAGT 57.421 45.000 9.46 0.00 39.43 3.01
410 411 2.579410 AGCATGGTAAACCGGAAGTT 57.421 45.000 9.46 1.11 41.81 2.66
412 413 3.227614 AGCATGGTAAACCGGAAGTTTT 58.772 40.909 9.46 0.00 46.79 2.43
413 414 3.639561 AGCATGGTAAACCGGAAGTTTTT 59.360 39.130 9.46 0.00 46.79 1.94
433 434 2.715737 TTGGGCAAATTACGTTCAGC 57.284 45.000 0.00 0.00 0.00 4.26
439 440 2.405025 GCAAATTACGTTCAGCAAGCAC 59.595 45.455 0.00 0.00 0.00 4.40
442 443 1.837538 TTACGTTCAGCAAGCACGGC 61.838 55.000 0.00 0.00 38.26 5.68
485 487 2.804986 TGTCAGGATTTGCCATGCTA 57.195 45.000 0.00 0.00 40.02 3.49
486 488 2.646930 TGTCAGGATTTGCCATGCTAG 58.353 47.619 0.00 0.00 40.02 3.42
487 489 2.025981 TGTCAGGATTTGCCATGCTAGT 60.026 45.455 0.00 0.00 40.02 2.57
489 491 3.018856 TCAGGATTTGCCATGCTAGTTG 58.981 45.455 0.00 0.00 40.02 3.16
493 495 3.181483 GGATTTGCCATGCTAGTTGAAGG 60.181 47.826 0.00 0.00 36.34 3.46
494 496 1.838112 TTGCCATGCTAGTTGAAGGG 58.162 50.000 0.00 0.00 0.00 3.95
504 506 4.701651 TGCTAGTTGAAGGGAATTGTCATG 59.298 41.667 0.00 0.00 0.00 3.07
514 516 0.443869 AATTGTCATGCTCGCGACAC 59.556 50.000 3.71 0.00 41.67 3.67
515 517 0.670239 ATTGTCATGCTCGCGACACA 60.670 50.000 3.71 7.20 41.67 3.72
517 519 0.172352 TGTCATGCTCGCGACACATA 59.828 50.000 16.99 2.71 37.23 2.29
519 521 1.860950 GTCATGCTCGCGACACATAAT 59.139 47.619 16.99 0.00 32.24 1.28
520 522 2.285220 GTCATGCTCGCGACACATAATT 59.715 45.455 16.99 0.00 32.24 1.40
522 524 2.804421 TGCTCGCGACACATAATTTG 57.196 45.000 3.71 0.00 0.00 2.32
523 525 2.073056 TGCTCGCGACACATAATTTGT 58.927 42.857 3.71 0.00 39.91 2.83
525 527 2.093625 GCTCGCGACACATAATTTGTCA 59.906 45.455 3.71 0.00 43.09 3.58
526 528 3.659735 CTCGCGACACATAATTTGTCAC 58.340 45.455 3.71 0.00 43.09 3.67
527 529 3.060602 TCGCGACACATAATTTGTCACA 58.939 40.909 3.71 0.00 43.09 3.58
530 532 4.672862 CGCGACACATAATTTGTCACAAAA 59.327 37.500 7.14 0.00 43.09 2.44
553 555 7.778470 AAAAAGTTCGATTTGCCATGTTTAA 57.222 28.000 0.00 0.00 0.00 1.52
554 556 7.778470 AAAAGTTCGATTTGCCATGTTTAAA 57.222 28.000 0.00 0.00 0.00 1.52
555 557 7.778470 AAAGTTCGATTTGCCATGTTTAAAA 57.222 28.000 0.00 0.00 0.00 1.52
557 559 7.581011 AGTTCGATTTGCCATGTTTAAAATC 57.419 32.000 0.00 1.45 36.25 2.17
558 560 6.589907 AGTTCGATTTGCCATGTTTAAAATCC 59.410 34.615 11.13 2.70 36.23 3.01
559 561 5.098893 TCGATTTGCCATGTTTAAAATCCG 58.901 37.500 11.13 0.00 36.23 4.18
560 562 5.098893 CGATTTGCCATGTTTAAAATCCGA 58.901 37.500 11.13 0.00 36.23 4.55
561 563 5.004345 CGATTTGCCATGTTTAAAATCCGAC 59.996 40.000 11.13 0.00 36.23 4.79
562 564 3.479505 TGCCATGTTTAAAATCCGACG 57.520 42.857 0.00 0.00 0.00 5.12
563 565 2.814919 TGCCATGTTTAAAATCCGACGT 59.185 40.909 0.00 0.00 0.00 4.34
564 566 3.120130 TGCCATGTTTAAAATCCGACGTC 60.120 43.478 5.18 5.18 0.00 4.34
565 567 3.120130 GCCATGTTTAAAATCCGACGTCA 60.120 43.478 17.16 0.00 0.00 4.35
566 568 4.647964 CCATGTTTAAAATCCGACGTCAG 58.352 43.478 17.16 3.99 0.00 3.51
567 569 4.390603 CCATGTTTAAAATCCGACGTCAGA 59.609 41.667 17.16 10.57 0.00 3.27
568 570 5.064707 CCATGTTTAAAATCCGACGTCAGAT 59.935 40.000 17.16 12.71 0.00 2.90
569 571 6.403200 CCATGTTTAAAATCCGACGTCAGATT 60.403 38.462 19.06 19.06 34.18 2.40
570 572 6.548441 TGTTTAAAATCCGACGTCAGATTT 57.452 33.333 26.62 26.62 42.93 2.17
572 574 8.259049 TGTTTAAAATCCGACGTCAGATTTAT 57.741 30.769 30.27 23.23 40.84 1.40
574 576 9.845305 GTTTAAAATCCGACGTCAGATTTATAG 57.155 33.333 30.27 7.16 40.84 1.31
576 578 4.785511 ATCCGACGTCAGATTTATAGGG 57.214 45.455 17.16 4.41 0.00 3.53
577 579 3.559069 TCCGACGTCAGATTTATAGGGT 58.441 45.455 17.16 0.00 0.00 4.34
578 580 3.317149 TCCGACGTCAGATTTATAGGGTG 59.683 47.826 17.16 0.00 0.00 4.61
580 582 3.067742 CGACGTCAGATTTATAGGGTGGT 59.932 47.826 17.16 0.00 0.00 4.16
581 583 4.441079 CGACGTCAGATTTATAGGGTGGTT 60.441 45.833 17.16 0.00 0.00 3.67
582 584 5.019785 ACGTCAGATTTATAGGGTGGTTC 57.980 43.478 0.00 0.00 0.00 3.62
583 585 4.715297 ACGTCAGATTTATAGGGTGGTTCT 59.285 41.667 0.00 0.00 0.00 3.01
625 631 4.999950 AGCTAGTGTGCATCTATAATTGGC 59.000 41.667 0.00 0.00 34.99 4.52
696 713 2.285083 ACGTACAAGCAAAGCAACTGA 58.715 42.857 0.00 0.00 0.00 3.41
750 771 2.560504 TCCTTAAGCATACGCACATGG 58.439 47.619 0.00 0.00 42.27 3.66
752 773 2.545526 CCTTAAGCATACGCACATGGAG 59.454 50.000 0.00 0.00 42.27 3.86
788 809 1.942657 GCAAGTGACAGTTCTGCTTCA 59.057 47.619 0.00 0.00 0.00 3.02
832 853 2.679837 CACAAACACTCACACAGCTCTT 59.320 45.455 0.00 0.00 0.00 2.85
839 860 0.394192 TCACACAGCTCTTGGACTGG 59.606 55.000 0.00 0.00 38.25 4.00
881 902 0.178992 TTTTCAGCCTGGACACCTGG 60.179 55.000 0.00 8.95 44.16 4.45
892 913 0.827507 GACACCTGGGCCACACAAAT 60.828 55.000 0.00 0.00 0.00 2.32
913 934 1.459450 CCCACCAATAACAACCGGAG 58.541 55.000 9.46 1.96 0.00 4.63
1030 1056 2.268280 CTCTCCAGTGCTGCCCTG 59.732 66.667 5.06 5.06 0.00 4.45
1032 1058 1.229177 TCTCCAGTGCTGCCCTGTA 60.229 57.895 11.13 0.00 0.00 2.74
1036 1062 1.376424 CAGTGCTGCCCTGTACTGG 60.376 63.158 11.71 11.71 43.61 4.00
1043 1069 2.579201 CCCTGTACTGGGCTCACG 59.421 66.667 23.40 0.79 40.84 4.35
1061 1087 2.663188 GCCGGCATCGTCCATCTC 60.663 66.667 24.80 0.00 33.95 2.75
1062 1088 2.814604 CCGGCATCGTCCATCTCA 59.185 61.111 0.00 0.00 33.95 3.27
1064 1090 1.946156 CGGCATCGTCCATCTCACG 60.946 63.158 0.00 0.00 38.67 4.35
1074 1100 3.712187 GTCCATCTCACGATCTTTCTCC 58.288 50.000 0.00 0.00 0.00 3.71
1076 1102 2.123342 CATCTCACGATCTTTCTCCGC 58.877 52.381 0.00 0.00 0.00 5.54
1130 1156 3.397439 GAGGAGGAGGCTGCAGCA 61.397 66.667 37.63 0.00 44.36 4.41
1200 1229 3.011635 GCTGGAGCGCCTCTTCTCA 62.012 63.158 8.34 0.00 34.31 3.27
1237 1266 1.376424 ATGAAGCACGAGCCAGGTG 60.376 57.895 0.00 0.00 43.56 4.00
1242 1271 2.357517 CACGAGCCAGGTGACCAC 60.358 66.667 3.63 0.00 37.60 4.16
1256 1285 2.107750 CCACGCTCGGATCATGCT 59.892 61.111 0.00 0.00 0.00 3.79
1260 1289 1.953138 CGCTCGGATCATGCTGTCC 60.953 63.158 0.00 0.00 0.00 4.02
1271 1300 1.174712 ATGCTGTCCGTTGCTTTGCT 61.175 50.000 0.00 0.00 0.00 3.91
1282 1311 3.451526 GTTGCTTTGCTGAGCTTTCTTT 58.548 40.909 5.83 0.00 43.11 2.52
1286 1315 1.308047 TTGCTGAGCTTTCTTTCGCA 58.692 45.000 5.83 0.00 0.00 5.10
1288 1317 2.698803 TGCTGAGCTTTCTTTCGCATA 58.301 42.857 5.83 0.00 0.00 3.14
1290 1319 4.441792 TGCTGAGCTTTCTTTCGCATATA 58.558 39.130 5.83 0.00 0.00 0.86
1302 1335 7.094508 TCTTTCGCATATATTTTGCCTTTGA 57.905 32.000 5.13 0.00 36.75 2.69
1333 1366 4.129380 TGACAGGATTGTGTCTCTGTTTG 58.871 43.478 5.65 0.00 46.06 2.93
1344 1377 3.006430 TGTCTCTGTTTGTCGCTTGGATA 59.994 43.478 0.00 0.00 0.00 2.59
1348 1381 2.679837 CTGTTTGTCGCTTGGATATGCT 59.320 45.455 0.00 0.00 0.00 3.79
1428 1461 4.810191 AGATTGCGTCTTCCTTCTTACT 57.190 40.909 0.00 0.00 31.47 2.24
1445 1478 2.604046 ACTGCCTTCGATGTATCACC 57.396 50.000 0.00 0.00 0.00 4.02
1470 1503 1.003233 GTCTTCCTTCTTGCCGCCT 60.003 57.895 0.00 0.00 0.00 5.52
1484 1517 1.926510 GCCGCCTTTGATGTAAAATGC 59.073 47.619 0.00 0.00 0.00 3.56
1500 1533 8.729805 TGTAAAATGCAAGACCTGAAATTTTT 57.270 26.923 0.00 0.00 35.79 1.94
1522 1555 1.136305 TGTCAGATTGCGTACTAGGCC 59.864 52.381 0.00 0.00 0.00 5.19
1573 1607 3.067106 GCCTGTCGAGAATCACTGAAAA 58.933 45.455 0.00 0.00 33.17 2.29
1574 1608 3.498397 GCCTGTCGAGAATCACTGAAAAA 59.502 43.478 0.00 0.00 33.17 1.94
1609 1647 6.849811 CGACAGATGATCAGATAAAACATTGC 59.150 38.462 0.09 0.00 0.00 3.56
1632 1671 5.118990 CGATAACAACCCTGTCTCATGAAT 58.881 41.667 0.00 0.00 33.45 2.57
1638 1677 6.118170 ACAACCCTGTCTCATGAATCTAATG 58.882 40.000 0.00 0.00 0.00 1.90
1645 1684 7.362315 CCTGTCTCATGAATCTAATGTTGCAAA 60.362 37.037 0.00 0.00 0.00 3.68
1669 1708 9.880157 AAACCAGAAAATTCATGAGGAATAATG 57.120 29.630 0.00 0.00 45.46 1.90
1690 1831 0.250295 TTGCTACGCACCTTGAAGCT 60.250 50.000 0.00 0.00 38.71 3.74
1697 1838 0.670162 GCACCTTGAAGCTTCAGCAA 59.330 50.000 27.02 13.55 45.16 3.91
1723 1864 3.279434 GAGACAAAACTCAACCCACAGT 58.721 45.455 0.00 0.00 36.95 3.55
1738 1879 2.890311 CCACAGTGGCCTTATTTCACAA 59.110 45.455 6.67 0.00 34.17 3.33
1746 1887 6.071391 AGTGGCCTTATTTCACAAATGTTAGG 60.071 38.462 3.32 0.00 34.17 2.69
1766 1911 5.208294 AGGAACTACTTGAGACATCCCTA 57.792 43.478 0.00 0.00 36.02 3.53
1802 1947 9.144747 CATATATTTCAGGAATAGTTCGGAGTG 57.855 37.037 0.00 0.00 33.87 3.51
1811 1956 0.759346 AGTTCGGAGTGAGCAAAGGT 59.241 50.000 0.00 0.00 0.00 3.50
1818 1963 5.553123 TCGGAGTGAGCAAAGGTTTATTAA 58.447 37.500 0.00 0.00 0.00 1.40
1819 1964 5.998981 TCGGAGTGAGCAAAGGTTTATTAAA 59.001 36.000 0.00 0.00 0.00 1.52
1997 2143 3.941573 GGGTAAACTATCAAACCCGACA 58.058 45.455 0.00 0.00 42.11 4.35
2158 2308 9.072294 GTTTCACCCAATATTTTGTCTAATTCG 57.928 33.333 0.00 0.00 0.00 3.34
2194 2344 3.258123 ACTGACAGTTTTTGTTTGCCACT 59.742 39.130 1.07 0.00 41.05 4.00
2303 2453 2.802719 AGTTAACGTGCCATCCCATTT 58.197 42.857 0.00 0.00 0.00 2.32
2321 2471 6.612456 TCCCATTTGCTGATTTCCTGATAAAT 59.388 34.615 0.00 0.00 0.00 1.40
2437 2630 7.765695 ATTAAGACTGGCAAAAGAGAATCAA 57.234 32.000 0.00 0.00 37.82 2.57
2561 2754 1.362768 TGAAAGTAGCGAGCATGCTG 58.637 50.000 28.27 18.10 46.70 4.41
2573 2766 2.437359 ATGCTGTCTGAAGGCGCC 60.437 61.111 21.89 21.89 0.00 6.53
2622 2815 1.110442 CTCTAGGGACAGCTGGAGTG 58.890 60.000 19.93 3.12 0.00 3.51
2701 2894 9.869844 GAACTCCGAATCATAATAAACATTGAG 57.130 33.333 0.00 0.00 0.00 3.02
2702 2895 7.865707 ACTCCGAATCATAATAAACATTGAGC 58.134 34.615 0.00 0.00 0.00 4.26
2704 2897 9.208022 CTCCGAATCATAATAAACATTGAGCTA 57.792 33.333 0.00 0.00 0.00 3.32
2706 2899 9.817365 CCGAATCATAATAAACATTGAGCTAAG 57.183 33.333 0.00 0.00 0.00 2.18
2712 2905 9.390795 CATAATAAACATTGAGCTAAGCATCAC 57.609 33.333 0.00 0.00 0.00 3.06
2727 2920 6.989155 AAGCATCACAATGGGATTCATAAT 57.011 33.333 0.00 0.00 34.44 1.28
2890 3083 5.235850 TCTTAACAAACTCACTGGGCATA 57.764 39.130 0.00 0.00 0.00 3.14
3063 3264 9.807649 AACAAAATATCAGGAACTTGCATTATC 57.192 29.630 0.00 0.00 34.60 1.75
3252 3464 2.906389 TGTTTACAGATGGGAGAGTGCT 59.094 45.455 0.00 0.00 0.00 4.40
3276 3488 2.204237 CTGTTTTCACTGGCTTTTGGC 58.796 47.619 0.00 0.00 46.23 4.52
3425 3638 3.013921 TCAGGGTTCACCGCAAAATATC 58.986 45.455 0.00 0.00 46.96 1.63
3426 3639 2.099098 CAGGGTTCACCGCAAAATATCC 59.901 50.000 0.00 0.00 46.96 2.59
3432 3646 5.163499 GGTTCACCGCAAAATATCCCAAATA 60.163 40.000 0.00 0.00 0.00 1.40
3457 3671 4.459089 GGGAGCTCCTGACCACGC 62.459 72.222 31.36 9.17 35.95 5.34
3500 3855 9.708092 ACTACTACTTCTTACTTTTTGACCATC 57.292 33.333 0.00 0.00 0.00 3.51
3523 3878 7.177832 TCAAGGGTTAACTTCATTCTCGATA 57.822 36.000 5.42 0.00 0.00 2.92
3568 3924 9.189156 TCATTATTAAGGTTCTCAAAAGATGGG 57.811 33.333 0.00 0.00 0.00 4.00
4039 4502 9.125026 CCTGTTTGATAGGAAATATTGCTACTT 57.875 33.333 0.00 0.00 36.38 2.24
4161 4631 7.928706 GCAACATCCTACAAACAGAGTATAGAT 59.071 37.037 0.00 0.00 0.00 1.98
4498 4976 8.275015 TGTGACTTGTGACATTAAAAAGAGAA 57.725 30.769 0.00 0.00 0.00 2.87
4499 4977 8.181573 TGTGACTTGTGACATTAAAAAGAGAAC 58.818 33.333 0.00 0.00 0.00 3.01
4500 4978 8.181573 GTGACTTGTGACATTAAAAAGAGAACA 58.818 33.333 0.00 0.00 0.00 3.18
4502 4980 9.736023 GACTTGTGACATTAAAAAGAGAACAAT 57.264 29.630 0.00 0.00 0.00 2.71
4756 5267 3.440522 GGTTTGCAGAAAGTGGGACTATC 59.559 47.826 0.00 0.00 0.00 2.08
4817 5328 6.137559 ACAGTGGGGGTAAGTATTTTTCAAA 58.862 36.000 0.00 0.00 0.00 2.69
4864 5375 6.985653 TTGGGATTGATTTGAAACACCTTA 57.014 33.333 0.00 0.00 0.00 2.69
5033 5544 5.104235 AGGAAGAGGTCTAGAGTAGAACCTC 60.104 48.000 15.14 15.14 43.60 3.85
5046 5557 3.782889 AGAACCTCGCCAATTTTATGC 57.217 42.857 0.00 0.00 0.00 3.14
5077 5588 5.621193 ACATGAAGGTAGCAAAACAGTAGT 58.379 37.500 0.00 0.00 0.00 2.73
5078 5589 6.765403 ACATGAAGGTAGCAAAACAGTAGTA 58.235 36.000 0.00 0.00 0.00 1.82
5080 5591 7.717875 ACATGAAGGTAGCAAAACAGTAGTAAA 59.282 33.333 0.00 0.00 0.00 2.01
5216 5727 3.203487 ACCTTGTAACTTTGTTCCCTCCA 59.797 43.478 0.00 0.00 0.00 3.86
5314 5825 8.150945 GGATGCTTTTACAGTATCTCTAATCCA 58.849 37.037 0.00 0.00 42.73 3.41
5325 5836 9.844257 CAGTATCTCTAATCCAAAGGAGAAATT 57.156 33.333 0.00 0.00 38.16 1.82
5341 5852 2.978156 AATTTGGGACTCCTTGCAGA 57.022 45.000 0.00 0.00 0.00 4.26
5364 5875 6.017934 AGACTGCAGCCACAAAATAATATACG 60.018 38.462 15.27 0.00 0.00 3.06
5405 5917 9.175312 GAACATTCATATGGATTGCTATCATCT 57.825 33.333 10.33 0.00 36.01 2.90
5406 5918 8.734218 ACATTCATATGGATTGCTATCATCTC 57.266 34.615 10.33 0.00 36.01 2.75
5410 5922 8.599624 TCATATGGATTGCTATCATCTCTACA 57.400 34.615 10.33 0.00 32.09 2.74
5435 5947 8.398665 CAGCAGTAACCTTTTATGAATAGGAAC 58.601 37.037 3.12 1.89 33.21 3.62
5607 6121 3.251484 CTTGGAAGCTCCTATATCCCCA 58.749 50.000 0.00 0.00 37.46 4.96
5700 6214 5.863935 GGTTTTCAAGGACATAATGCAGTTC 59.136 40.000 0.00 0.00 0.00 3.01
5710 6224 5.815581 ACATAATGCAGTTCCAAGGACTAA 58.184 37.500 0.00 0.00 0.00 2.24
5740 6254 4.782019 TTATGATGTGCAAAGTTCCACC 57.218 40.909 0.00 0.00 0.00 4.61
5808 6322 9.838339 AGGTATTAACACATCCAAAGAGAATAG 57.162 33.333 0.00 0.00 0.00 1.73
5856 6370 2.160417 CCTTCGGCAGTTTCATCAAGAC 59.840 50.000 0.00 0.00 0.00 3.01
5862 6376 4.670992 CGGCAGTTTCATCAAGACATTCAG 60.671 45.833 0.00 0.00 0.00 3.02
5863 6377 4.217118 GGCAGTTTCATCAAGACATTCAGT 59.783 41.667 0.00 0.00 0.00 3.41
5969 6483 9.172060 AGTATATATTTATCAATAGGGCCCTCC 57.828 37.037 32.80 0.00 0.00 4.30
5995 6509 7.599245 CCCTACTGCTACTTTACATAATGCTAC 59.401 40.741 0.00 0.00 0.00 3.58
6104 6618 6.377146 ACCCGCAACAATAGTAAATTCAAGAT 59.623 34.615 0.00 0.00 0.00 2.40
6142 6656 8.738645 AAATAGTTCCTTGTCCTCATCAATAC 57.261 34.615 0.00 0.00 0.00 1.89
6170 6684 2.538861 CACATGCGTGCAAATGAACAAA 59.461 40.909 5.64 0.00 36.06 2.83
6177 6691 3.658852 CGTGCAAATGAACAAATGAACGC 60.659 43.478 9.52 0.00 37.94 4.84
6323 6837 9.871238 CTACTAAAGAGTAAACAGGAATTAGCA 57.129 33.333 0.00 0.00 37.72 3.49
6522 7036 4.487948 CAAACTTGTGGCAATCCATACAG 58.512 43.478 0.00 0.00 45.62 2.74
6530 7044 2.880890 GGCAATCCATACAGAAGCGAAT 59.119 45.455 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.487086 GGTTTGCTTGGCTTTTGGGATT 60.487 45.455 0.00 0.00 0.00 3.01
2 3 1.072173 GGTTTGCTTGGCTTTTGGGAT 59.928 47.619 0.00 0.00 0.00 3.85
4 5 0.179936 TGGTTTGCTTGGCTTTTGGG 59.820 50.000 0.00 0.00 0.00 4.12
5 6 1.585297 CTGGTTTGCTTGGCTTTTGG 58.415 50.000 0.00 0.00 0.00 3.28
6 7 0.939419 GCTGGTTTGCTTGGCTTTTG 59.061 50.000 0.00 0.00 0.00 2.44
7 8 0.540923 TGCTGGTTTGCTTGGCTTTT 59.459 45.000 0.00 0.00 0.00 2.27
8 9 0.760572 ATGCTGGTTTGCTTGGCTTT 59.239 45.000 0.00 0.00 0.00 3.51
9 10 0.760572 AATGCTGGTTTGCTTGGCTT 59.239 45.000 0.00 0.00 0.00 4.35
10 11 0.034337 CAATGCTGGTTTGCTTGGCT 59.966 50.000 0.00 0.00 0.00 4.75
11 12 0.952010 CCAATGCTGGTTTGCTTGGC 60.952 55.000 0.00 0.00 38.00 4.52
12 13 0.680618 TCCAATGCTGGTTTGCTTGG 59.319 50.000 0.00 0.00 43.97 3.61
13 14 1.614903 TCTCCAATGCTGGTTTGCTTG 59.385 47.619 0.00 0.00 43.97 4.01
14 15 1.999648 TCTCCAATGCTGGTTTGCTT 58.000 45.000 0.00 0.00 43.97 3.91
15 16 1.822990 CATCTCCAATGCTGGTTTGCT 59.177 47.619 0.00 0.00 43.97 3.91
16 17 1.134907 CCATCTCCAATGCTGGTTTGC 60.135 52.381 0.00 0.00 43.97 3.68
17 18 2.449464 TCCATCTCCAATGCTGGTTTG 58.551 47.619 0.00 0.00 43.97 2.93
18 19 2.905415 TCCATCTCCAATGCTGGTTT 57.095 45.000 0.00 0.00 43.97 3.27
19 20 3.393426 AATCCATCTCCAATGCTGGTT 57.607 42.857 0.00 0.00 43.97 3.67
20 21 3.028850 CAAATCCATCTCCAATGCTGGT 58.971 45.455 0.00 0.00 43.97 4.00
21 22 2.223971 GCAAATCCATCTCCAATGCTGG 60.224 50.000 0.00 0.00 45.08 4.85
22 23 2.693591 AGCAAATCCATCTCCAATGCTG 59.306 45.455 0.00 0.00 40.80 4.41
23 24 3.028094 AGCAAATCCATCTCCAATGCT 57.972 42.857 0.00 0.00 37.80 3.79
24 25 3.383825 AGAAGCAAATCCATCTCCAATGC 59.616 43.478 0.00 0.00 0.00 3.56
25 26 5.360144 AGAAGAAGCAAATCCATCTCCAATG 59.640 40.000 0.00 0.00 0.00 2.82
26 27 5.516984 AGAAGAAGCAAATCCATCTCCAAT 58.483 37.500 0.00 0.00 0.00 3.16
27 28 4.927049 AGAAGAAGCAAATCCATCTCCAA 58.073 39.130 0.00 0.00 0.00 3.53
28 29 4.581309 AGAAGAAGCAAATCCATCTCCA 57.419 40.909 0.00 0.00 0.00 3.86
29 30 4.704057 ACAAGAAGAAGCAAATCCATCTCC 59.296 41.667 0.00 0.00 0.00 3.71
30 31 5.893897 ACAAGAAGAAGCAAATCCATCTC 57.106 39.130 0.00 0.00 0.00 2.75
31 32 6.569226 CGAAACAAGAAGAAGCAAATCCATCT 60.569 38.462 0.00 0.00 0.00 2.90
32 33 5.570589 CGAAACAAGAAGAAGCAAATCCATC 59.429 40.000 0.00 0.00 0.00 3.51
33 34 5.241506 TCGAAACAAGAAGAAGCAAATCCAT 59.758 36.000 0.00 0.00 0.00 3.41
34 35 4.578516 TCGAAACAAGAAGAAGCAAATCCA 59.421 37.500 0.00 0.00 0.00 3.41
35 36 5.049405 TCTCGAAACAAGAAGAAGCAAATCC 60.049 40.000 0.00 0.00 0.00 3.01
36 37 5.990408 TCTCGAAACAAGAAGAAGCAAATC 58.010 37.500 0.00 0.00 0.00 2.17
37 38 6.377327 TTCTCGAAACAAGAAGAAGCAAAT 57.623 33.333 0.00 0.00 0.00 2.32
38 39 5.811399 TTCTCGAAACAAGAAGAAGCAAA 57.189 34.783 0.00 0.00 0.00 3.68
39 40 7.672983 ATATTCTCGAAACAAGAAGAAGCAA 57.327 32.000 0.00 0.00 36.27 3.91
40 41 7.361201 CCAATATTCTCGAAACAAGAAGAAGCA 60.361 37.037 0.00 0.00 36.27 3.91
41 42 6.963805 CCAATATTCTCGAAACAAGAAGAAGC 59.036 38.462 0.00 0.00 36.27 3.86
42 43 8.256611 TCCAATATTCTCGAAACAAGAAGAAG 57.743 34.615 0.00 0.00 36.27 2.85
43 44 7.334421 CCTCCAATATTCTCGAAACAAGAAGAA 59.666 37.037 0.00 0.00 36.27 2.52
44 45 6.818644 CCTCCAATATTCTCGAAACAAGAAGA 59.181 38.462 0.00 0.00 36.27 2.87
45 46 6.595716 ACCTCCAATATTCTCGAAACAAGAAG 59.404 38.462 0.00 0.00 36.27 2.85
46 47 6.371548 CACCTCCAATATTCTCGAAACAAGAA 59.628 38.462 0.00 0.00 37.18 2.52
47 48 5.874810 CACCTCCAATATTCTCGAAACAAGA 59.125 40.000 0.00 0.00 0.00 3.02
48 49 5.065218 CCACCTCCAATATTCTCGAAACAAG 59.935 44.000 0.00 0.00 0.00 3.16
49 50 4.941263 CCACCTCCAATATTCTCGAAACAA 59.059 41.667 0.00 0.00 0.00 2.83
50 51 4.513442 CCACCTCCAATATTCTCGAAACA 58.487 43.478 0.00 0.00 0.00 2.83
51 52 3.312697 GCCACCTCCAATATTCTCGAAAC 59.687 47.826 0.00 0.00 0.00 2.78
52 53 3.199946 AGCCACCTCCAATATTCTCGAAA 59.800 43.478 0.00 0.00 0.00 3.46
53 54 2.771943 AGCCACCTCCAATATTCTCGAA 59.228 45.455 0.00 0.00 0.00 3.71
54 55 2.365617 GAGCCACCTCCAATATTCTCGA 59.634 50.000 0.00 0.00 31.68 4.04
55 56 2.103094 TGAGCCACCTCCAATATTCTCG 59.897 50.000 0.00 0.00 37.29 4.04
56 57 3.135530 AGTGAGCCACCTCCAATATTCTC 59.864 47.826 2.18 0.00 37.29 2.87
57 58 3.118531 AGTGAGCCACCTCCAATATTCT 58.881 45.455 2.18 0.00 37.29 2.40
58 59 3.567478 AGTGAGCCACCTCCAATATTC 57.433 47.619 2.18 0.00 37.29 1.75
59 60 4.721776 TCTTAGTGAGCCACCTCCAATATT 59.278 41.667 2.18 0.00 37.29 1.28
60 61 4.298626 TCTTAGTGAGCCACCTCCAATAT 58.701 43.478 2.18 0.00 37.29 1.28
61 62 3.719871 TCTTAGTGAGCCACCTCCAATA 58.280 45.455 2.18 0.00 37.29 1.90
62 63 2.551270 TCTTAGTGAGCCACCTCCAAT 58.449 47.619 2.18 0.00 37.29 3.16
63 64 2.024176 TCTTAGTGAGCCACCTCCAA 57.976 50.000 2.18 0.00 37.29 3.53
64 65 2.254152 ATCTTAGTGAGCCACCTCCA 57.746 50.000 2.18 0.00 37.29 3.86
65 66 3.055094 TGAAATCTTAGTGAGCCACCTCC 60.055 47.826 2.18 0.00 37.29 4.30
66 67 4.187694 CTGAAATCTTAGTGAGCCACCTC 58.812 47.826 2.18 0.00 38.62 3.85
67 68 3.054802 CCTGAAATCTTAGTGAGCCACCT 60.055 47.826 2.18 0.00 34.49 4.00
68 69 3.055094 TCCTGAAATCTTAGTGAGCCACC 60.055 47.826 2.18 0.00 34.49 4.61
69 70 4.081420 TCTCCTGAAATCTTAGTGAGCCAC 60.081 45.833 0.00 0.00 34.10 5.01
70 71 4.081420 GTCTCCTGAAATCTTAGTGAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
71 72 4.161377 AGTCTCCTGAAATCTTAGTGAGCC 59.839 45.833 0.00 0.00 0.00 4.70
72 73 5.337578 AGTCTCCTGAAATCTTAGTGAGC 57.662 43.478 0.00 0.00 0.00 4.26
73 74 7.169158 AGAAGTCTCCTGAAATCTTAGTGAG 57.831 40.000 0.00 0.00 0.00 3.51
74 75 7.015682 ACAAGAAGTCTCCTGAAATCTTAGTGA 59.984 37.037 0.00 0.00 31.98 3.41
75 76 7.117523 CACAAGAAGTCTCCTGAAATCTTAGTG 59.882 40.741 0.00 0.00 31.98 2.74
76 77 7.158021 CACAAGAAGTCTCCTGAAATCTTAGT 58.842 38.462 0.00 0.00 31.98 2.24
77 78 7.158021 ACACAAGAAGTCTCCTGAAATCTTAG 58.842 38.462 0.00 0.00 31.98 2.18
78 79 7.067496 ACACAAGAAGTCTCCTGAAATCTTA 57.933 36.000 0.00 0.00 31.98 2.10
79 80 5.934781 ACACAAGAAGTCTCCTGAAATCTT 58.065 37.500 0.00 0.00 32.81 2.40
80 81 5.559148 ACACAAGAAGTCTCCTGAAATCT 57.441 39.130 0.00 0.00 0.00 2.40
81 82 6.459923 ACTACACAAGAAGTCTCCTGAAATC 58.540 40.000 0.00 0.00 0.00 2.17
82 83 6.426646 ACTACACAAGAAGTCTCCTGAAAT 57.573 37.500 0.00 0.00 0.00 2.17
83 84 5.871396 ACTACACAAGAAGTCTCCTGAAA 57.129 39.130 0.00 0.00 0.00 2.69
84 85 6.322969 TGTTACTACACAAGAAGTCTCCTGAA 59.677 38.462 0.00 0.00 0.00 3.02
85 86 5.831525 TGTTACTACACAAGAAGTCTCCTGA 59.168 40.000 0.00 0.00 0.00 3.86
86 87 6.085555 TGTTACTACACAAGAAGTCTCCTG 57.914 41.667 0.00 0.00 0.00 3.86
87 88 6.692486 CATGTTACTACACAAGAAGTCTCCT 58.308 40.000 0.00 0.00 37.03 3.69
88 89 5.348997 GCATGTTACTACACAAGAAGTCTCC 59.651 44.000 0.00 0.00 37.03 3.71
89 90 5.926542 TGCATGTTACTACACAAGAAGTCTC 59.073 40.000 0.00 0.00 37.03 3.36
90 91 5.853936 TGCATGTTACTACACAAGAAGTCT 58.146 37.500 0.00 0.00 37.03 3.24
91 92 6.727824 ATGCATGTTACTACACAAGAAGTC 57.272 37.500 0.00 0.00 37.03 3.01
92 93 7.362662 CAAATGCATGTTACTACACAAGAAGT 58.637 34.615 0.00 0.00 37.03 3.01
93 94 6.306356 GCAAATGCATGTTACTACACAAGAAG 59.694 38.462 0.00 0.00 41.59 2.85
94 95 6.148948 GCAAATGCATGTTACTACACAAGAA 58.851 36.000 0.00 0.00 41.59 2.52
95 96 5.698832 GCAAATGCATGTTACTACACAAGA 58.301 37.500 0.00 0.00 41.59 3.02
96 97 5.997732 GCAAATGCATGTTACTACACAAG 57.002 39.130 0.00 0.00 41.59 3.16
111 112 3.396260 AATATCATGGCCTGCAAATGC 57.604 42.857 3.32 0.00 42.50 3.56
132 133 6.418057 ACCAATTACCTCAAGCATGAAAAA 57.582 33.333 0.00 0.00 34.49 1.94
133 134 5.335583 CGACCAATTACCTCAAGCATGAAAA 60.336 40.000 0.00 0.00 34.49 2.29
134 135 4.155826 CGACCAATTACCTCAAGCATGAAA 59.844 41.667 0.00 0.00 34.49 2.69
135 136 3.689161 CGACCAATTACCTCAAGCATGAA 59.311 43.478 0.00 0.00 34.49 2.57
136 137 3.270027 CGACCAATTACCTCAAGCATGA 58.730 45.455 0.00 0.00 0.00 3.07
137 138 3.009723 ACGACCAATTACCTCAAGCATG 58.990 45.455 0.00 0.00 0.00 4.06
138 139 3.350219 ACGACCAATTACCTCAAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
139 140 2.851263 ACGACCAATTACCTCAAGCA 57.149 45.000 0.00 0.00 0.00 3.91
140 141 3.751698 AGAAACGACCAATTACCTCAAGC 59.248 43.478 0.00 0.00 0.00 4.01
141 142 5.238583 AGAGAAACGACCAATTACCTCAAG 58.761 41.667 0.00 0.00 0.00 3.02
142 143 5.223449 AGAGAAACGACCAATTACCTCAA 57.777 39.130 0.00 0.00 0.00 3.02
143 144 4.884668 AGAGAAACGACCAATTACCTCA 57.115 40.909 0.00 0.00 0.00 3.86
144 145 5.106673 CCAAAGAGAAACGACCAATTACCTC 60.107 44.000 0.00 0.00 0.00 3.85
145 146 4.760204 CCAAAGAGAAACGACCAATTACCT 59.240 41.667 0.00 0.00 0.00 3.08
146 147 4.615223 GCCAAAGAGAAACGACCAATTACC 60.615 45.833 0.00 0.00 0.00 2.85
147 148 4.023536 TGCCAAAGAGAAACGACCAATTAC 60.024 41.667 0.00 0.00 0.00 1.89
148 149 4.138290 TGCCAAAGAGAAACGACCAATTA 58.862 39.130 0.00 0.00 0.00 1.40
149 150 2.955660 TGCCAAAGAGAAACGACCAATT 59.044 40.909 0.00 0.00 0.00 2.32
150 151 2.582052 TGCCAAAGAGAAACGACCAAT 58.418 42.857 0.00 0.00 0.00 3.16
151 152 2.045561 TGCCAAAGAGAAACGACCAA 57.954 45.000 0.00 0.00 0.00 3.67
152 153 2.270352 ATGCCAAAGAGAAACGACCA 57.730 45.000 0.00 0.00 0.00 4.02
153 154 3.643159 AAATGCCAAAGAGAAACGACC 57.357 42.857 0.00 0.00 0.00 4.79
154 155 4.441087 GTCAAAATGCCAAAGAGAAACGAC 59.559 41.667 0.00 0.00 0.00 4.34
155 156 4.097135 TGTCAAAATGCCAAAGAGAAACGA 59.903 37.500 0.00 0.00 0.00 3.85
156 157 4.358851 TGTCAAAATGCCAAAGAGAAACG 58.641 39.130 0.00 0.00 0.00 3.60
157 158 5.984926 TGATGTCAAAATGCCAAAGAGAAAC 59.015 36.000 0.00 0.00 0.00 2.78
158 159 6.159299 TGATGTCAAAATGCCAAAGAGAAA 57.841 33.333 0.00 0.00 0.00 2.52
159 160 5.787953 TGATGTCAAAATGCCAAAGAGAA 57.212 34.783 0.00 0.00 0.00 2.87
160 161 5.988310 ATGATGTCAAAATGCCAAAGAGA 57.012 34.783 0.00 0.00 0.00 3.10
161 162 7.429636 AAAATGATGTCAAAATGCCAAAGAG 57.570 32.000 0.00 0.00 0.00 2.85
162 163 7.804843 AAAAATGATGTCAAAATGCCAAAGA 57.195 28.000 0.00 0.00 0.00 2.52
163 164 8.776470 AGTAAAAATGATGTCAAAATGCCAAAG 58.224 29.630 0.00 0.00 0.00 2.77
164 165 8.674263 AGTAAAAATGATGTCAAAATGCCAAA 57.326 26.923 0.00 0.00 0.00 3.28
165 166 8.674263 AAGTAAAAATGATGTCAAAATGCCAA 57.326 26.923 0.00 0.00 0.00 4.52
166 167 8.674263 AAAGTAAAAATGATGTCAAAATGCCA 57.326 26.923 0.00 0.00 0.00 4.92
200 201 4.388577 AGCACAACTCTAGGGGATTTTT 57.611 40.909 0.00 0.00 0.00 1.94
201 202 4.388577 AAGCACAACTCTAGGGGATTTT 57.611 40.909 0.00 0.00 0.00 1.82
202 203 4.388577 AAAGCACAACTCTAGGGGATTT 57.611 40.909 0.00 0.00 0.00 2.17
203 204 4.388577 AAAAGCACAACTCTAGGGGATT 57.611 40.909 0.00 0.00 0.00 3.01
204 205 4.082125 CAAAAAGCACAACTCTAGGGGAT 58.918 43.478 0.00 0.00 0.00 3.85
205 206 3.117663 ACAAAAAGCACAACTCTAGGGGA 60.118 43.478 0.00 0.00 0.00 4.81
206 207 3.222603 ACAAAAAGCACAACTCTAGGGG 58.777 45.455 0.00 0.00 0.00 4.79
207 208 4.918810 AACAAAAAGCACAACTCTAGGG 57.081 40.909 0.00 0.00 0.00 3.53
208 209 5.758924 GGTAACAAAAAGCACAACTCTAGG 58.241 41.667 0.00 0.00 0.00 3.02
226 227 7.147707 ACCATGACTCTAGGACTAATTGGTAAC 60.148 40.741 0.00 0.00 32.26 2.50
227 228 6.901300 ACCATGACTCTAGGACTAATTGGTAA 59.099 38.462 0.00 0.00 32.26 2.85
228 229 6.441222 ACCATGACTCTAGGACTAATTGGTA 58.559 40.000 0.00 0.00 32.26 3.25
229 230 5.281314 ACCATGACTCTAGGACTAATTGGT 58.719 41.667 0.00 0.00 0.00 3.67
230 231 5.878406 ACCATGACTCTAGGACTAATTGG 57.122 43.478 0.00 0.00 0.00 3.16
231 232 8.043710 AGAAAACCATGACTCTAGGACTAATTG 58.956 37.037 0.00 0.00 0.00 2.32
232 233 8.043710 CAGAAAACCATGACTCTAGGACTAATT 58.956 37.037 0.00 0.00 0.00 1.40
233 234 7.181125 ACAGAAAACCATGACTCTAGGACTAAT 59.819 37.037 0.00 0.00 0.00 1.73
234 235 6.497259 ACAGAAAACCATGACTCTAGGACTAA 59.503 38.462 0.00 0.00 0.00 2.24
235 236 6.017192 ACAGAAAACCATGACTCTAGGACTA 58.983 40.000 0.00 0.00 0.00 2.59
236 237 4.841246 ACAGAAAACCATGACTCTAGGACT 59.159 41.667 0.00 0.00 0.00 3.85
237 238 5.153950 ACAGAAAACCATGACTCTAGGAC 57.846 43.478 0.00 0.00 0.00 3.85
238 239 5.825593 AACAGAAAACCATGACTCTAGGA 57.174 39.130 0.00 0.00 0.00 2.94
239 240 7.979444 TTTAACAGAAAACCATGACTCTAGG 57.021 36.000 0.00 0.00 0.00 3.02
241 242 9.010029 GGATTTTAACAGAAAACCATGACTCTA 57.990 33.333 0.00 0.00 33.19 2.43
242 243 7.039714 GGGATTTTAACAGAAAACCATGACTCT 60.040 37.037 0.00 0.00 34.25 3.24
243 244 7.090808 GGGATTTTAACAGAAAACCATGACTC 58.909 38.462 0.00 0.00 34.25 3.36
244 245 6.014584 GGGGATTTTAACAGAAAACCATGACT 60.015 38.462 0.00 0.00 34.25 3.41
245 246 6.014584 AGGGGATTTTAACAGAAAACCATGAC 60.015 38.462 0.00 0.00 34.25 3.06
246 247 6.081356 AGGGGATTTTAACAGAAAACCATGA 58.919 36.000 0.00 0.00 34.25 3.07
247 248 6.358974 AGGGGATTTTAACAGAAAACCATG 57.641 37.500 0.00 0.00 34.25 3.66
248 249 7.475299 TCTAGGGGATTTTAACAGAAAACCAT 58.525 34.615 0.00 0.00 34.25 3.55
249 250 6.854578 TCTAGGGGATTTTAACAGAAAACCA 58.145 36.000 0.00 0.00 34.25 3.67
250 251 6.946583 ACTCTAGGGGATTTTAACAGAAAACC 59.053 38.462 0.00 0.00 32.44 3.27
251 252 7.997773 ACTCTAGGGGATTTTAACAGAAAAC 57.002 36.000 0.00 0.00 0.00 2.43
252 253 8.002459 ACAACTCTAGGGGATTTTAACAGAAAA 58.998 33.333 0.00 0.00 0.00 2.29
253 254 7.447238 CACAACTCTAGGGGATTTTAACAGAAA 59.553 37.037 0.00 0.00 0.00 2.52
254 255 6.940298 CACAACTCTAGGGGATTTTAACAGAA 59.060 38.462 0.00 0.00 0.00 3.02
255 256 6.472887 CACAACTCTAGGGGATTTTAACAGA 58.527 40.000 0.00 0.00 0.00 3.41
256 257 5.648092 CCACAACTCTAGGGGATTTTAACAG 59.352 44.000 0.00 0.00 0.00 3.16
257 258 5.073965 ACCACAACTCTAGGGGATTTTAACA 59.926 40.000 0.00 0.00 0.00 2.41
258 259 5.567430 ACCACAACTCTAGGGGATTTTAAC 58.433 41.667 0.00 0.00 0.00 2.01
259 260 5.853572 ACCACAACTCTAGGGGATTTTAA 57.146 39.130 0.00 0.00 0.00 1.52
260 261 5.853572 AACCACAACTCTAGGGGATTTTA 57.146 39.130 0.00 0.00 0.00 1.52
261 262 4.741928 AACCACAACTCTAGGGGATTTT 57.258 40.909 0.00 0.00 0.00 1.82
262 263 4.741928 AAACCACAACTCTAGGGGATTT 57.258 40.909 0.00 0.00 0.00 2.17
263 264 4.141018 ACAAAACCACAACTCTAGGGGATT 60.141 41.667 0.00 0.00 0.00 3.01
264 265 3.397955 ACAAAACCACAACTCTAGGGGAT 59.602 43.478 0.00 0.00 0.00 3.85
265 266 2.781174 ACAAAACCACAACTCTAGGGGA 59.219 45.455 0.00 0.00 0.00 4.81
266 267 2.884639 CACAAAACCACAACTCTAGGGG 59.115 50.000 0.00 0.00 0.00 4.79
267 268 3.551846 ACACAAAACCACAACTCTAGGG 58.448 45.455 0.00 0.00 0.00 3.53
268 269 6.317893 AGTTAACACAAAACCACAACTCTAGG 59.682 38.462 8.61 0.00 0.00 3.02
269 270 7.316544 AGTTAACACAAAACCACAACTCTAG 57.683 36.000 8.61 0.00 0.00 2.43
270 271 6.316890 GGAGTTAACACAAAACCACAACTCTA 59.683 38.462 8.61 0.00 40.01 2.43
271 272 5.124936 GGAGTTAACACAAAACCACAACTCT 59.875 40.000 8.61 0.00 40.01 3.24
272 273 5.337554 GGAGTTAACACAAAACCACAACTC 58.662 41.667 8.61 0.00 39.61 3.01
273 274 4.142556 CGGAGTTAACACAAAACCACAACT 60.143 41.667 8.61 0.00 0.00 3.16
274 275 4.099824 CGGAGTTAACACAAAACCACAAC 58.900 43.478 8.61 0.00 0.00 3.32
275 276 3.427773 GCGGAGTTAACACAAAACCACAA 60.428 43.478 8.61 0.00 0.00 3.33
276 277 2.097791 GCGGAGTTAACACAAAACCACA 59.902 45.455 8.61 0.00 0.00 4.17
277 278 2.542205 GGCGGAGTTAACACAAAACCAC 60.542 50.000 8.61 0.00 0.00 4.16
278 279 1.677052 GGCGGAGTTAACACAAAACCA 59.323 47.619 8.61 0.00 0.00 3.67
279 280 1.001048 GGGCGGAGTTAACACAAAACC 60.001 52.381 8.61 1.42 0.00 3.27
280 281 1.001048 GGGGCGGAGTTAACACAAAAC 60.001 52.381 8.61 0.00 0.00 2.43
281 282 1.320507 GGGGCGGAGTTAACACAAAA 58.679 50.000 8.61 0.00 0.00 2.44
282 283 0.183014 TGGGGCGGAGTTAACACAAA 59.817 50.000 8.61 0.00 0.00 2.83
283 284 0.183014 TTGGGGCGGAGTTAACACAA 59.817 50.000 8.61 0.00 0.00 3.33
284 285 0.183014 TTTGGGGCGGAGTTAACACA 59.817 50.000 8.61 0.00 0.00 3.72
285 286 1.268625 CTTTTGGGGCGGAGTTAACAC 59.731 52.381 8.61 0.73 0.00 3.32
286 287 1.133730 ACTTTTGGGGCGGAGTTAACA 60.134 47.619 8.61 0.00 0.00 2.41
287 288 1.612676 ACTTTTGGGGCGGAGTTAAC 58.387 50.000 0.00 0.00 0.00 2.01
288 289 1.957877 CAACTTTTGGGGCGGAGTTAA 59.042 47.619 0.00 0.00 31.58 2.01
289 290 1.133730 ACAACTTTTGGGGCGGAGTTA 60.134 47.619 0.00 0.00 31.58 2.24
290 291 0.396556 ACAACTTTTGGGGCGGAGTT 60.397 50.000 0.00 0.00 32.89 3.01
291 292 1.106944 CACAACTTTTGGGGCGGAGT 61.107 55.000 0.00 0.00 34.12 3.85
292 293 1.106944 ACACAACTTTTGGGGCGGAG 61.107 55.000 0.00 0.00 38.76 4.63
293 294 0.183014 TACACAACTTTTGGGGCGGA 59.817 50.000 0.00 0.00 38.76 5.54
294 295 1.253100 ATACACAACTTTTGGGGCGG 58.747 50.000 0.00 0.00 38.76 6.13
295 296 3.056304 CAAATACACAACTTTTGGGGCG 58.944 45.455 0.00 0.00 38.76 6.13
296 297 3.807071 CACAAATACACAACTTTTGGGGC 59.193 43.478 0.00 0.00 38.76 5.80
297 298 3.807071 GCACAAATACACAACTTTTGGGG 59.193 43.478 0.00 0.00 38.76 4.96
298 299 4.437239 TGCACAAATACACAACTTTTGGG 58.563 39.130 0.00 0.00 40.79 4.12
299 300 6.601741 ATTGCACAAATACACAACTTTTGG 57.398 33.333 0.00 0.00 35.23 3.28
300 301 7.639461 GGAAATTGCACAAATACACAACTTTTG 59.361 33.333 0.00 0.00 36.62 2.44
301 302 7.552330 AGGAAATTGCACAAATACACAACTTTT 59.448 29.630 0.00 0.00 0.00 2.27
302 303 7.047271 AGGAAATTGCACAAATACACAACTTT 58.953 30.769 0.00 0.00 0.00 2.66
303 304 6.581712 AGGAAATTGCACAAATACACAACTT 58.418 32.000 0.00 0.00 0.00 2.66
304 305 6.160576 AGGAAATTGCACAAATACACAACT 57.839 33.333 0.00 0.00 0.00 3.16
305 306 5.405269 GGAGGAAATTGCACAAATACACAAC 59.595 40.000 0.00 0.00 0.00 3.32
306 307 5.069648 TGGAGGAAATTGCACAAATACACAA 59.930 36.000 0.00 0.00 0.00 3.33
307 308 4.586421 TGGAGGAAATTGCACAAATACACA 59.414 37.500 0.00 0.00 0.00 3.72
308 309 5.132897 TGGAGGAAATTGCACAAATACAC 57.867 39.130 0.00 0.00 0.00 2.90
309 310 5.999205 ATGGAGGAAATTGCACAAATACA 57.001 34.783 0.00 0.00 0.00 2.29
310 311 8.770438 TTTAATGGAGGAAATTGCACAAATAC 57.230 30.769 0.00 0.00 0.00 1.89
311 312 9.784531 TTTTTAATGGAGGAAATTGCACAAATA 57.215 25.926 0.00 0.00 0.00 1.40
312 313 8.688747 TTTTTAATGGAGGAAATTGCACAAAT 57.311 26.923 0.00 0.00 0.00 2.32
369 370 5.107259 GCTTAAAAATCCGGCGTCAATTTTT 60.107 36.000 26.09 26.09 42.29 1.94
370 371 4.387559 GCTTAAAAATCCGGCGTCAATTTT 59.612 37.500 6.01 11.90 34.86 1.82
371 372 3.924073 GCTTAAAAATCCGGCGTCAATTT 59.076 39.130 6.01 6.25 0.00 1.82
372 373 3.057174 TGCTTAAAAATCCGGCGTCAATT 60.057 39.130 6.01 0.00 0.00 2.32
373 374 2.490115 TGCTTAAAAATCCGGCGTCAAT 59.510 40.909 6.01 0.00 0.00 2.57
374 375 1.880675 TGCTTAAAAATCCGGCGTCAA 59.119 42.857 6.01 0.00 0.00 3.18
375 376 1.524848 TGCTTAAAAATCCGGCGTCA 58.475 45.000 6.01 0.00 0.00 4.35
376 377 2.450160 CATGCTTAAAAATCCGGCGTC 58.550 47.619 6.01 0.00 0.00 5.19
377 378 1.134175 CCATGCTTAAAAATCCGGCGT 59.866 47.619 6.01 0.00 0.00 5.68
378 379 1.134175 ACCATGCTTAAAAATCCGGCG 59.866 47.619 0.00 0.00 0.00 6.46
379 380 2.959507 ACCATGCTTAAAAATCCGGC 57.040 45.000 0.00 0.00 0.00 6.13
380 381 5.106442 GGTTTACCATGCTTAAAAATCCGG 58.894 41.667 0.00 0.00 35.64 5.14
381 382 4.796312 CGGTTTACCATGCTTAAAAATCCG 59.204 41.667 0.00 9.32 35.14 4.18
382 383 5.105675 TCCGGTTTACCATGCTTAAAAATCC 60.106 40.000 0.00 0.00 35.14 3.01
383 384 5.956642 TCCGGTTTACCATGCTTAAAAATC 58.043 37.500 0.00 0.00 35.14 2.17
384 385 5.986501 TCCGGTTTACCATGCTTAAAAAT 57.013 34.783 0.00 0.00 35.14 1.82
385 386 5.302313 ACTTCCGGTTTACCATGCTTAAAAA 59.698 36.000 0.00 0.00 35.14 1.94
386 387 4.828387 ACTTCCGGTTTACCATGCTTAAAA 59.172 37.500 0.00 0.00 35.14 1.52
387 388 4.400120 ACTTCCGGTTTACCATGCTTAAA 58.600 39.130 0.00 0.00 35.14 1.52
388 389 4.023726 ACTTCCGGTTTACCATGCTTAA 57.976 40.909 0.00 0.00 35.14 1.85
389 390 3.706600 ACTTCCGGTTTACCATGCTTA 57.293 42.857 0.00 0.00 35.14 3.09
390 391 2.579410 ACTTCCGGTTTACCATGCTT 57.421 45.000 0.00 0.00 35.14 3.91
391 392 2.579410 AACTTCCGGTTTACCATGCT 57.421 45.000 0.00 0.00 33.90 3.79
392 393 3.653539 AAAACTTCCGGTTTACCATGC 57.346 42.857 0.00 0.00 46.18 4.06
411 412 3.804873 GCTGAACGTAATTTGCCCAAAAA 59.195 39.130 0.00 0.00 33.56 1.94
412 413 3.181475 TGCTGAACGTAATTTGCCCAAAA 60.181 39.130 0.00 0.00 33.56 2.44
413 414 2.362397 TGCTGAACGTAATTTGCCCAAA 59.638 40.909 0.00 0.00 34.46 3.28
414 415 1.957177 TGCTGAACGTAATTTGCCCAA 59.043 42.857 0.00 0.00 0.00 4.12
415 416 1.610363 TGCTGAACGTAATTTGCCCA 58.390 45.000 0.00 0.00 0.00 5.36
416 417 2.595386 CTTGCTGAACGTAATTTGCCC 58.405 47.619 0.00 0.00 0.00 5.36
417 418 1.985684 GCTTGCTGAACGTAATTTGCC 59.014 47.619 0.00 0.00 0.00 4.52
418 419 2.405025 GTGCTTGCTGAACGTAATTTGC 59.595 45.455 0.00 0.00 0.00 3.68
419 420 2.651703 CGTGCTTGCTGAACGTAATTTG 59.348 45.455 0.00 0.00 42.56 2.32
420 421 2.350388 CCGTGCTTGCTGAACGTAATTT 60.350 45.455 9.32 0.00 45.96 1.82
421 422 1.196808 CCGTGCTTGCTGAACGTAATT 59.803 47.619 9.32 0.00 45.96 1.40
422 423 0.796312 CCGTGCTTGCTGAACGTAAT 59.204 50.000 9.32 0.00 45.96 1.89
423 424 1.837538 GCCGTGCTTGCTGAACGTAA 61.838 55.000 9.32 0.00 45.96 3.18
424 425 2.314647 GCCGTGCTTGCTGAACGTA 61.315 57.895 9.32 0.00 45.96 3.57
425 426 3.649986 GCCGTGCTTGCTGAACGT 61.650 61.111 9.32 0.00 45.96 3.99
426 427 2.660553 TTTGCCGTGCTTGCTGAACG 62.661 55.000 4.21 4.21 46.91 3.95
427 428 0.318955 ATTTGCCGTGCTTGCTGAAC 60.319 50.000 0.00 0.00 0.00 3.18
430 431 1.444895 GGATTTGCCGTGCTTGCTG 60.445 57.895 0.00 0.00 0.00 4.41
433 434 1.213537 CCAGGATTTGCCGTGCTTG 59.786 57.895 0.00 0.00 43.43 4.01
439 440 3.603144 TTTTTGCCAGGATTTGCCG 57.397 47.368 0.00 0.00 43.43 5.69
468 469 3.018856 CAACTAGCATGGCAAATCCTGA 58.981 45.455 0.00 0.00 35.26 3.86
470 471 3.370840 TCAACTAGCATGGCAAATCCT 57.629 42.857 0.00 0.00 35.26 3.24
471 472 3.181483 CCTTCAACTAGCATGGCAAATCC 60.181 47.826 0.00 0.00 0.00 3.01
473 474 2.762327 CCCTTCAACTAGCATGGCAAAT 59.238 45.455 0.00 0.00 0.00 2.32
474 475 2.170166 CCCTTCAACTAGCATGGCAAA 58.830 47.619 0.00 0.00 0.00 3.68
478 480 4.019174 ACAATTCCCTTCAACTAGCATGG 58.981 43.478 0.00 0.00 0.00 3.66
485 487 3.760684 GAGCATGACAATTCCCTTCAACT 59.239 43.478 0.00 0.00 0.00 3.16
486 488 3.426695 CGAGCATGACAATTCCCTTCAAC 60.427 47.826 0.00 0.00 0.00 3.18
487 489 2.749076 CGAGCATGACAATTCCCTTCAA 59.251 45.455 0.00 0.00 0.00 2.69
489 491 1.064654 GCGAGCATGACAATTCCCTTC 59.935 52.381 0.00 0.00 0.00 3.46
493 495 0.026803 GTCGCGAGCATGACAATTCC 59.973 55.000 10.24 0.00 35.20 3.01
494 496 0.721154 TGTCGCGAGCATGACAATTC 59.279 50.000 10.24 0.00 41.82 2.17
504 506 2.093625 TGACAAATTATGTGTCGCGAGC 59.906 45.455 10.24 6.32 46.89 5.03
530 532 7.778470 TTTAAACATGGCAAATCGAACTTTT 57.222 28.000 0.00 0.00 0.00 2.27
534 536 6.453659 CGGATTTTAAACATGGCAAATCGAAC 60.454 38.462 0.00 0.00 36.77 3.95
536 538 5.098893 CGGATTTTAAACATGGCAAATCGA 58.901 37.500 0.00 0.00 36.77 3.59
537 539 5.004345 GTCGGATTTTAAACATGGCAAATCG 59.996 40.000 0.00 3.21 36.77 3.34
538 540 5.004345 CGTCGGATTTTAAACATGGCAAATC 59.996 40.000 0.00 5.31 35.67 2.17
539 541 4.862018 CGTCGGATTTTAAACATGGCAAAT 59.138 37.500 0.00 0.00 0.00 2.32
542 544 2.814919 ACGTCGGATTTTAAACATGGCA 59.185 40.909 0.00 0.00 0.00 4.92
543 545 3.120130 TGACGTCGGATTTTAAACATGGC 60.120 43.478 11.62 0.00 0.00 4.40
544 546 4.390603 TCTGACGTCGGATTTTAAACATGG 59.609 41.667 23.11 0.00 0.00 3.66
545 547 5.524511 TCTGACGTCGGATTTTAAACATG 57.475 39.130 23.11 0.00 0.00 3.21
546 548 6.737254 AATCTGACGTCGGATTTTAAACAT 57.263 33.333 36.06 19.13 46.67 2.71
555 557 4.022242 CACCCTATAAATCTGACGTCGGAT 60.022 45.833 30.05 30.05 43.43 4.18
557 559 3.552273 CCACCCTATAAATCTGACGTCGG 60.552 52.174 18.66 18.66 0.00 4.79
558 560 3.067742 ACCACCCTATAAATCTGACGTCG 59.932 47.826 11.62 6.07 0.00 5.12
559 561 4.667519 ACCACCCTATAAATCTGACGTC 57.332 45.455 9.11 9.11 0.00 4.34
560 562 4.715297 AGAACCACCCTATAAATCTGACGT 59.285 41.667 0.00 0.00 0.00 4.34
561 563 5.277857 AGAACCACCCTATAAATCTGACG 57.722 43.478 0.00 0.00 0.00 4.35
562 564 7.939784 AAAAGAACCACCCTATAAATCTGAC 57.060 36.000 0.00 0.00 0.00 3.51
602 608 4.999950 GCCAATTATAGATGCACACTAGCT 59.000 41.667 0.00 0.00 34.99 3.32
625 631 1.570813 TTAGCCAACATCGATCTGCG 58.429 50.000 0.00 0.00 42.69 5.18
672 689 2.483583 TGCTTTGCTTGTACGTTTGG 57.516 45.000 0.00 0.00 0.00 3.28
696 713 5.083533 TCTGTTGATGGTTTGCAAACTTT 57.916 34.783 34.39 24.28 38.89 2.66
762 783 2.624838 CAGAACTGTCACTTGCCCAAAT 59.375 45.455 0.00 0.00 0.00 2.32
788 809 1.980765 TCAGCTCTGTGTGGAAGGAAT 59.019 47.619 0.00 0.00 0.00 3.01
839 860 2.257286 CTGGTACTGTGGCGCAATGC 62.257 60.000 10.83 0.00 45.38 3.56
853 874 2.708861 TCCAGGCTGAAAAGTTCTGGTA 59.291 45.455 17.94 0.00 43.83 3.25
881 902 2.282783 GGTGGGGATTTGTGTGGCC 61.283 63.158 0.00 0.00 0.00 5.36
892 913 0.038455 CCGGTTGTTATTGGTGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
936 957 2.289072 GGCTTGGAGCTTTCCTTTTTCC 60.289 50.000 0.00 0.00 41.99 3.13
937 958 2.630098 AGGCTTGGAGCTTTCCTTTTTC 59.370 45.455 0.00 0.00 41.99 2.29
943 969 0.621082 AGGTAGGCTTGGAGCTTTCC 59.379 55.000 0.00 0.00 41.99 3.13
1061 1087 1.996292 TCTTGCGGAGAAAGATCGTG 58.004 50.000 0.00 0.00 0.00 4.35
1062 1088 2.288825 TGTTCTTGCGGAGAAAGATCGT 60.289 45.455 4.15 0.00 45.59 3.73
1064 1090 2.416893 GGTGTTCTTGCGGAGAAAGATC 59.583 50.000 4.15 0.00 45.59 2.75
1065 1091 2.427506 GGTGTTCTTGCGGAGAAAGAT 58.572 47.619 4.15 0.00 45.59 2.40
1066 1092 1.872237 CGGTGTTCTTGCGGAGAAAGA 60.872 52.381 4.15 0.00 45.59 2.52
1070 1096 2.342279 CCGGTGTTCTTGCGGAGA 59.658 61.111 0.00 0.00 0.00 3.71
1076 1102 1.908066 GCTAACCGCCGGTGTTCTTG 61.908 60.000 10.80 0.00 35.34 3.02
1130 1156 1.675641 GCAGACTGGGAACGGCATT 60.676 57.895 4.26 0.00 41.93 3.56
1200 1229 3.387374 TCATGGTTGCCTTGTTGACATTT 59.613 39.130 0.00 0.00 31.64 2.32
1237 1266 2.240500 GCATGATCCGAGCGTGGTC 61.241 63.158 7.91 0.00 0.00 4.02
1242 1271 1.953138 GGACAGCATGATCCGAGCG 60.953 63.158 0.00 0.00 39.69 5.03
1256 1285 1.785041 GCTCAGCAAAGCAACGGACA 61.785 55.000 5.55 0.00 42.05 4.02
1260 1289 1.002033 AGAAAGCTCAGCAAAGCAACG 60.002 47.619 12.23 0.00 45.00 4.10
1271 1300 6.692681 GCAAAATATATGCGAAAGAAAGCTCA 59.307 34.615 0.00 0.00 33.57 4.26
1282 1311 5.437289 CCTCAAAGGCAAAATATATGCGA 57.563 39.130 7.18 0.14 44.75 5.10
1302 1335 2.964310 AATCCTGTCAGCTGCGCCT 61.964 57.895 9.47 0.00 0.00 5.52
1309 1342 2.289320 ACAGAGACACAATCCTGTCAGC 60.289 50.000 0.00 0.00 42.74 4.26
1314 1347 3.185188 CGACAAACAGAGACACAATCCTG 59.815 47.826 0.00 0.00 33.90 3.86
1315 1348 3.393800 CGACAAACAGAGACACAATCCT 58.606 45.455 0.00 0.00 0.00 3.24
1333 1366 1.618837 TCCCTAGCATATCCAAGCGAC 59.381 52.381 0.00 0.00 35.48 5.19
1344 1377 1.133136 ACCGGTGATACTCCCTAGCAT 60.133 52.381 6.12 0.00 0.00 3.79
1348 1381 1.751733 CGGAACCGGTGATACTCCCTA 60.752 57.143 8.52 0.00 35.56 3.53
1428 1461 0.104120 CCGGTGATACATCGAAGGCA 59.896 55.000 5.98 0.00 40.81 4.75
1445 1478 1.429463 CAAGAAGGAAGACGGAACCG 58.571 55.000 11.83 11.83 46.03 4.44
1470 1503 6.647334 TCAGGTCTTGCATTTTACATCAAA 57.353 33.333 0.00 0.00 0.00 2.69
1484 1517 9.918630 AATCTGACATAAAAATTTCAGGTCTTG 57.081 29.630 14.71 9.82 36.84 3.02
1500 1533 3.005472 GGCCTAGTACGCAATCTGACATA 59.995 47.826 0.00 0.00 0.00 2.29
1522 1555 5.510671 CATTTTAACATAGCCTTACCTGCG 58.489 41.667 0.00 0.00 0.00 5.18
1576 1610 4.256110 TCTGATCATCTGTCGCATGTTTT 58.744 39.130 0.00 0.00 0.00 2.43
1582 1620 5.418676 TGTTTTATCTGATCATCTGTCGCA 58.581 37.500 0.00 0.00 0.00 5.10
1609 1647 4.123497 TCATGAGACAGGGTTGTTATCG 57.877 45.455 0.00 0.00 37.76 2.92
1632 1671 7.495901 TGAATTTTCTGGTTTGCAACATTAGA 58.504 30.769 0.00 0.00 0.00 2.10
1638 1677 5.178067 CCTCATGAATTTTCTGGTTTGCAAC 59.822 40.000 0.00 0.00 0.00 4.17
1645 1684 7.343833 AGCATTATTCCTCATGAATTTTCTGGT 59.656 33.333 0.00 0.00 40.92 4.00
1649 1688 7.709613 AGCAAGCATTATTCCTCATGAATTTTC 59.290 33.333 0.00 0.00 40.92 2.29
1690 1831 5.182950 TGAGTTTTGTCTCAAAGTTGCTGAA 59.817 36.000 0.00 0.00 40.82 3.02
1716 1857 1.818674 GTGAAATAAGGCCACTGTGGG 59.181 52.381 27.02 10.08 38.19 4.61
1720 1861 5.138125 ACATTTGTGAAATAAGGCCACTG 57.862 39.130 5.01 0.00 0.00 3.66
1723 1864 6.013379 TCCTAACATTTGTGAAATAAGGCCA 58.987 36.000 5.01 0.00 30.44 5.36
1738 1879 7.331791 GGATGTCTCAAGTAGTTCCTAACATT 58.668 38.462 0.00 0.00 0.00 2.71
1746 1887 5.598830 TCCATAGGGATGTCTCAAGTAGTTC 59.401 44.000 0.00 0.00 38.64 3.01
1975 2121 3.583966 TGTCGGGTTTGATAGTTTACCCT 59.416 43.478 0.00 0.00 46.56 4.34
2158 2308 4.872664 ACTGTCAGTGTAGACAAGTAAGC 58.127 43.478 4.21 0.00 46.90 3.09
2194 2344 4.041198 CCCTGTTACAACCTGGAGAAAGTA 59.959 45.833 0.00 0.00 0.00 2.24
2379 2566 7.362056 CCTTGTGTTCAGGTAAAATATGTCCAG 60.362 40.741 0.00 0.00 0.00 3.86
2437 2630 8.157476 AGTACTTTCTCATATTTGGAGTGTGTT 58.843 33.333 0.00 0.00 34.04 3.32
2580 2773 0.968405 GCTTGGCCATTGAAACCTGA 59.032 50.000 6.09 0.00 0.00 3.86
2693 2886 5.393787 CCATTGTGATGCTTAGCTCAATGTT 60.394 40.000 25.08 8.01 39.85 2.71
2701 2894 3.633525 TGAATCCCATTGTGATGCTTAGC 59.366 43.478 0.00 0.00 31.67 3.09
2702 2895 7.514784 TTATGAATCCCATTGTGATGCTTAG 57.485 36.000 0.00 0.00 36.71 2.18
2704 2897 6.989155 ATTATGAATCCCATTGTGATGCTT 57.011 33.333 0.00 0.00 36.71 3.91
2727 2920 7.712204 TGTAACTGAGTGTCATTACATAGGA 57.288 36.000 0.00 0.00 38.08 2.94
2765 2958 4.916041 ATGGTCAGAATTTCTCCAGTCA 57.084 40.909 11.30 1.68 0.00 3.41
2890 3083 6.542821 TCAAGAAAAGAGGTCATACAATGGT 58.457 36.000 0.00 0.00 0.00 3.55
3076 3277 6.295719 ACCAACTAGTGTAGTTTCCATAGG 57.704 41.667 0.00 0.00 46.27 2.57
3127 3339 3.261897 ACTGCTAAGTAGAACCTGCATGT 59.738 43.478 0.00 0.00 33.79 3.21
3252 3464 3.306472 AAAGCCAGTGAAAACAGGGTA 57.694 42.857 0.00 0.00 0.00 3.69
3276 3488 3.129988 ACCTTCCGAAGTAACATAGTCCG 59.870 47.826 7.37 0.00 0.00 4.79
3425 3638 4.524328 GGAGCTCCCATAACATTATTTGGG 59.476 45.833 23.19 0.21 37.91 4.12
3426 3639 5.242393 CAGGAGCTCCCATAACATTATTTGG 59.758 44.000 29.54 0.00 37.41 3.28
3432 3646 2.173569 GGTCAGGAGCTCCCATAACATT 59.826 50.000 29.54 4.94 37.41 2.71
3457 3671 3.511934 AGTAGTCTTGAAGCTACACTGGG 59.488 47.826 20.62 0.00 39.82 4.45
3494 3708 5.946377 AGAATGAAGTTAACCCTTGATGGTC 59.054 40.000 0.88 0.00 37.76 4.02
3500 3855 7.710907 TGATATCGAGAATGAAGTTAACCCTTG 59.289 37.037 0.88 0.00 0.00 3.61
3523 3878 8.780846 ATAATGACATGTGCATTTGTTTTGAT 57.219 26.923 20.89 9.73 37.22 2.57
3919 4382 7.766278 TGCAGAGTTGGACTATCTTAGAATTTC 59.234 37.037 0.00 0.00 0.00 2.17
4039 4502 9.715121 ACTCGAACCATTACTGAATACTAAAAA 57.285 29.630 0.00 0.00 0.00 1.94
4136 4606 9.254133 CATCTATACTCTGTTTGTAGGATGTTG 57.746 37.037 0.00 0.00 34.00 3.33
4161 4631 2.625790 GGTTACACCCATTTGTTCAGCA 59.374 45.455 0.00 0.00 30.04 4.41
4332 4802 6.041296 ACTCAGTCAAATGCCAAGAAGATTTT 59.959 34.615 0.00 0.00 0.00 1.82
4333 4803 5.537674 ACTCAGTCAAATGCCAAGAAGATTT 59.462 36.000 0.00 0.00 0.00 2.17
4498 4976 5.245531 TCTCGAAAGAAGGCACATTATTGT 58.754 37.500 0.00 0.00 41.32 2.71
4499 4977 5.801350 TCTCGAAAGAAGGCACATTATTG 57.199 39.130 0.00 0.00 41.32 1.90
4500 4978 6.817765 TTTCTCGAAAGAAGGCACATTATT 57.182 33.333 0.00 0.00 42.36 1.40
4502 4980 5.529430 TGTTTTCTCGAAAGAAGGCACATTA 59.471 36.000 0.00 0.00 42.36 1.90
4558 5066 7.354312 ACATAAATATGTCTGCCCCTTTTAGT 58.646 34.615 0.21 0.00 42.96 2.24
4559 5067 7.823745 ACATAAATATGTCTGCCCCTTTTAG 57.176 36.000 0.21 0.00 42.96 1.85
4560 5068 7.417342 GCAACATAAATATGTCTGCCCCTTTTA 60.417 37.037 19.10 0.00 45.55 1.52
4756 5267 5.120208 CCTAAGTTGTTGTAACGGATCAGTG 59.880 44.000 0.00 0.00 0.00 3.66
4864 5375 4.322198 CCTCAACAATAGGCTGCAAACAAT 60.322 41.667 0.50 0.00 0.00 2.71
5046 5557 4.837896 TGCTACCTTCATGTCTATCTCG 57.162 45.455 0.00 0.00 0.00 4.04
5077 5588 3.766545 AGCTGCAGTCCCAGAAATTTTA 58.233 40.909 16.64 0.00 34.77 1.52
5078 5589 2.601905 AGCTGCAGTCCCAGAAATTTT 58.398 42.857 16.64 0.00 34.77 1.82
5080 5591 2.299326 AAGCTGCAGTCCCAGAAATT 57.701 45.000 16.64 0.00 34.77 1.82
5216 5727 3.266510 TCAAGCAGTGACAGAACAAGT 57.733 42.857 0.00 0.00 0.00 3.16
5325 5836 0.397941 CAGTCTGCAAGGAGTCCCAA 59.602 55.000 5.25 0.00 33.88 4.12
5326 5837 2.061220 CAGTCTGCAAGGAGTCCCA 58.939 57.895 5.25 0.00 33.88 4.37
5327 5838 1.376553 GCAGTCTGCAAGGAGTCCC 60.377 63.158 20.16 0.00 44.26 4.46
5341 5852 5.008613 CCGTATATTATTTTGTGGCTGCAGT 59.991 40.000 16.64 0.00 0.00 4.40
5364 5875 6.441093 TGAATGTTCTGCATTTCTGTATCC 57.559 37.500 0.00 0.00 46.90 2.59
5405 5917 9.817809 CTATTCATAAAAGGTTACTGCTGTAGA 57.182 33.333 0.00 0.00 0.00 2.59
5406 5918 9.046296 CCTATTCATAAAAGGTTACTGCTGTAG 57.954 37.037 3.54 0.00 0.00 2.74
5410 5922 8.329502 AGTTCCTATTCATAAAAGGTTACTGCT 58.670 33.333 0.00 0.00 30.59 4.24
5607 6121 6.432581 GGTTAATTTTCCTCCTGGGACTATT 58.567 40.000 0.00 0.00 45.03 1.73
5700 6214 9.740239 CATCATAATTGTCAATTTAGTCCTTGG 57.260 33.333 15.77 0.00 32.38 3.61
5710 6224 8.836268 AACTTTGCACATCATAATTGTCAATT 57.164 26.923 14.98 14.98 34.90 2.32
5808 6322 7.280428 GGTTAAGAAAGGCTAGAAATACCAGAC 59.720 40.741 0.00 0.00 0.00 3.51
5964 6478 1.880941 AAAGTAGCAGTAGGGGAGGG 58.119 55.000 0.00 0.00 0.00 4.30
5969 6483 6.525629 AGCATTATGTAAAGTAGCAGTAGGG 58.474 40.000 0.00 0.00 0.00 3.53
5995 6509 4.418392 ACTTAGGTTATACAACTCACGCG 58.582 43.478 3.53 3.53 34.88 6.01
6155 6669 3.658852 GCGTTCATTTGTTCATTTGCACG 60.659 43.478 0.00 0.00 33.05 5.34
6177 6691 6.954944 TGAACTCCAAACGAACTAATGAAAG 58.045 36.000 0.00 0.00 0.00 2.62
6323 6837 4.142609 TCTCAGTGTGAGTTTCTGCTTT 57.857 40.909 3.92 0.00 44.58 3.51
6353 6867 2.874052 GCACAGTGGCAGTGGTATACAA 60.874 50.000 25.12 0.00 37.46 2.41
6522 7036 8.673626 TCAGAATTGTCAAAAATATTCGCTTC 57.326 30.769 0.00 0.00 33.38 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.