Multiple sequence alignment - TraesCS2D01G126200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G126200 | chr2D | 100.000 | 3728 | 0 | 0 | 1 | 3728 | 73418490 | 73414763 | 0.000000e+00 | 6885 |
1 | TraesCS2D01G126200 | chr2D | 83.388 | 1517 | 216 | 23 | 1078 | 2585 | 73454324 | 73452835 | 0.000000e+00 | 1373 |
2 | TraesCS2D01G126200 | chr2D | 83.556 | 225 | 32 | 5 | 3321 | 3542 | 475808721 | 475808499 | 4.880000e-49 | 206 |
3 | TraesCS2D01G126200 | chr2A | 90.204 | 2113 | 144 | 28 | 719 | 2776 | 72814506 | 72812402 | 0.000000e+00 | 2697 |
4 | TraesCS2D01G126200 | chr2A | 82.675 | 1518 | 225 | 25 | 1078 | 2585 | 72932865 | 72931376 | 0.000000e+00 | 1312 |
5 | TraesCS2D01G126200 | chr2A | 96.132 | 517 | 17 | 3 | 3026 | 3542 | 30315564 | 30315051 | 0.000000e+00 | 841 |
6 | TraesCS2D01G126200 | chr2A | 95.192 | 520 | 22 | 2 | 3026 | 3545 | 338548365 | 338547849 | 0.000000e+00 | 819 |
7 | TraesCS2D01G126200 | chr2A | 96.552 | 87 | 3 | 0 | 2939 | 3025 | 72811209 | 72811123 | 1.080000e-30 | 145 |
8 | TraesCS2D01G126200 | chr2B | 91.640 | 1878 | 132 | 12 | 974 | 2850 | 111081978 | 111080125 | 0.000000e+00 | 2575 |
9 | TraesCS2D01G126200 | chr2B | 83.487 | 1520 | 217 | 22 | 1078 | 2589 | 111359647 | 111361140 | 0.000000e+00 | 1386 |
10 | TraesCS2D01G126200 | chr2B | 90.909 | 253 | 17 | 4 | 728 | 974 | 111082259 | 111082007 | 5.970000e-88 | 335 |
11 | TraesCS2D01G126200 | chr2B | 84.300 | 293 | 18 | 13 | 111 | 376 | 111083900 | 111083609 | 1.030000e-65 | 261 |
12 | TraesCS2D01G126200 | chr2B | 90.698 | 172 | 16 | 0 | 370 | 541 | 44749592 | 44749763 | 2.900000e-56 | 230 |
13 | TraesCS2D01G126200 | chr2B | 80.000 | 190 | 20 | 7 | 3541 | 3726 | 111080051 | 111079876 | 1.410000e-24 | 124 |
14 | TraesCS2D01G126200 | chr2B | 89.216 | 102 | 6 | 1 | 538 | 639 | 111083608 | 111083512 | 5.060000e-24 | 122 |
15 | TraesCS2D01G126200 | chr7A | 82.286 | 1496 | 229 | 23 | 1082 | 2574 | 81548322 | 81549784 | 0.000000e+00 | 1262 |
16 | TraesCS2D01G126200 | chr7A | 80.703 | 1508 | 235 | 28 | 1076 | 2580 | 518658738 | 518657284 | 0.000000e+00 | 1122 |
17 | TraesCS2D01G126200 | chr7A | 91.908 | 173 | 14 | 0 | 370 | 542 | 643187059 | 643186887 | 3.720000e-60 | 243 |
18 | TraesCS2D01G126200 | chr7A | 91.813 | 171 | 14 | 0 | 375 | 545 | 717441321 | 717441151 | 4.810000e-59 | 239 |
19 | TraesCS2D01G126200 | chr7A | 91.566 | 166 | 14 | 0 | 374 | 539 | 16718367 | 16718202 | 2.900000e-56 | 230 |
20 | TraesCS2D01G126200 | chr7A | 89.385 | 179 | 17 | 2 | 365 | 542 | 14185923 | 14186100 | 1.350000e-54 | 224 |
21 | TraesCS2D01G126200 | chr7D | 81.283 | 1496 | 244 | 24 | 1082 | 2574 | 78115570 | 78117032 | 0.000000e+00 | 1179 |
22 | TraesCS2D01G126200 | chr7D | 81.060 | 1510 | 245 | 28 | 1076 | 2581 | 477641723 | 477643195 | 0.000000e+00 | 1166 |
23 | TraesCS2D01G126200 | chr7D | 96.346 | 520 | 16 | 2 | 3026 | 3545 | 379092888 | 379092372 | 0.000000e+00 | 852 |
24 | TraesCS2D01G126200 | chr7B | 81.079 | 1501 | 237 | 33 | 1081 | 2574 | 501965747 | 501967207 | 0.000000e+00 | 1155 |
25 | TraesCS2D01G126200 | chr7B | 91.923 | 520 | 17 | 6 | 3026 | 3545 | 496786631 | 496786137 | 0.000000e+00 | 704 |
26 | TraesCS2D01G126200 | chr7B | 81.274 | 769 | 130 | 12 | 1807 | 2574 | 25340416 | 25341171 | 8.850000e-171 | 610 |
27 | TraesCS2D01G126200 | chr7B | 82.247 | 721 | 108 | 11 | 1082 | 1801 | 25339246 | 25339947 | 4.120000e-169 | 604 |
28 | TraesCS2D01G126200 | chr3A | 81.579 | 1406 | 218 | 21 | 1173 | 2574 | 33137241 | 33138609 | 0.000000e+00 | 1123 |
29 | TraesCS2D01G126200 | chr3B | 81.013 | 790 | 132 | 12 | 1788 | 2574 | 41849022 | 41849796 | 2.460000e-171 | 612 |
30 | TraesCS2D01G126200 | chr5B | 83.834 | 433 | 51 | 12 | 3112 | 3542 | 507657663 | 507658078 | 9.700000e-106 | 394 |
31 | TraesCS2D01G126200 | chr5B | 91.176 | 170 | 14 | 1 | 371 | 540 | 23416623 | 23416791 | 2.900000e-56 | 230 |
32 | TraesCS2D01G126200 | chr6D | 91.279 | 172 | 13 | 2 | 369 | 539 | 94051909 | 94052079 | 2.240000e-57 | 233 |
33 | TraesCS2D01G126200 | chr4D | 90.643 | 171 | 16 | 0 | 375 | 545 | 243613272 | 243613442 | 1.040000e-55 | 228 |
34 | TraesCS2D01G126200 | chr3D | 91.071 | 168 | 15 | 0 | 372 | 539 | 550509429 | 550509596 | 1.040000e-55 | 228 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G126200 | chr2D | 73414763 | 73418490 | 3727 | True | 6885.0 | 6885 | 100.0000 | 1 | 3728 | 1 | chr2D.!!$R1 | 3727 |
1 | TraesCS2D01G126200 | chr2D | 73452835 | 73454324 | 1489 | True | 1373.0 | 1373 | 83.3880 | 1078 | 2585 | 1 | chr2D.!!$R2 | 1507 |
2 | TraesCS2D01G126200 | chr2A | 72811123 | 72814506 | 3383 | True | 1421.0 | 2697 | 93.3780 | 719 | 3025 | 2 | chr2A.!!$R4 | 2306 |
3 | TraesCS2D01G126200 | chr2A | 72931376 | 72932865 | 1489 | True | 1312.0 | 1312 | 82.6750 | 1078 | 2585 | 1 | chr2A.!!$R2 | 1507 |
4 | TraesCS2D01G126200 | chr2A | 30315051 | 30315564 | 513 | True | 841.0 | 841 | 96.1320 | 3026 | 3542 | 1 | chr2A.!!$R1 | 516 |
5 | TraesCS2D01G126200 | chr2A | 338547849 | 338548365 | 516 | True | 819.0 | 819 | 95.1920 | 3026 | 3545 | 1 | chr2A.!!$R3 | 519 |
6 | TraesCS2D01G126200 | chr2B | 111359647 | 111361140 | 1493 | False | 1386.0 | 1386 | 83.4870 | 1078 | 2589 | 1 | chr2B.!!$F2 | 1511 |
7 | TraesCS2D01G126200 | chr2B | 111079876 | 111083900 | 4024 | True | 683.4 | 2575 | 87.2130 | 111 | 3726 | 5 | chr2B.!!$R1 | 3615 |
8 | TraesCS2D01G126200 | chr7A | 81548322 | 81549784 | 1462 | False | 1262.0 | 1262 | 82.2860 | 1082 | 2574 | 1 | chr7A.!!$F2 | 1492 |
9 | TraesCS2D01G126200 | chr7A | 518657284 | 518658738 | 1454 | True | 1122.0 | 1122 | 80.7030 | 1076 | 2580 | 1 | chr7A.!!$R2 | 1504 |
10 | TraesCS2D01G126200 | chr7D | 78115570 | 78117032 | 1462 | False | 1179.0 | 1179 | 81.2830 | 1082 | 2574 | 1 | chr7D.!!$F1 | 1492 |
11 | TraesCS2D01G126200 | chr7D | 477641723 | 477643195 | 1472 | False | 1166.0 | 1166 | 81.0600 | 1076 | 2581 | 1 | chr7D.!!$F2 | 1505 |
12 | TraesCS2D01G126200 | chr7D | 379092372 | 379092888 | 516 | True | 852.0 | 852 | 96.3460 | 3026 | 3545 | 1 | chr7D.!!$R1 | 519 |
13 | TraesCS2D01G126200 | chr7B | 501965747 | 501967207 | 1460 | False | 1155.0 | 1155 | 81.0790 | 1081 | 2574 | 1 | chr7B.!!$F1 | 1493 |
14 | TraesCS2D01G126200 | chr7B | 25339246 | 25341171 | 1925 | False | 607.0 | 610 | 81.7605 | 1082 | 2574 | 2 | chr7B.!!$F2 | 1492 |
15 | TraesCS2D01G126200 | chr3A | 33137241 | 33138609 | 1368 | False | 1123.0 | 1123 | 81.5790 | 1173 | 2574 | 1 | chr3A.!!$F1 | 1401 |
16 | TraesCS2D01G126200 | chr3B | 41849022 | 41849796 | 774 | False | 612.0 | 612 | 81.0130 | 1788 | 2574 | 1 | chr3B.!!$F1 | 786 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
759 | 1951 | 0.108281 | GGAACCACGAGAGGGCTAAC | 60.108 | 60.0 | 0.0 | 0.0 | 0.00 | 2.34 | F |
2593 | 4320 | 0.040336 | GCCGCTTGATGCTGATGATG | 60.040 | 55.0 | 0.0 | 0.0 | 40.11 | 3.07 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2608 | 4335 | 0.321564 | TCTATATGCGCCACATGCCC | 60.322 | 55.0 | 4.18 | 0.0 | 40.06 | 5.36 | R |
3585 | 6433 | 0.249868 | CGTCCTCCAGCTTGTTCACA | 60.250 | 55.0 | 0.00 | 0.0 | 0.00 | 3.58 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 8.664211 | AAGAAAGTACAGAGGAAGTTAAAGTG | 57.336 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
26 | 27 | 8.019656 | AGAAAGTACAGAGGAAGTTAAAGTGA | 57.980 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
27 | 28 | 8.145122 | AGAAAGTACAGAGGAAGTTAAAGTGAG | 58.855 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
28 | 29 | 7.598759 | AAGTACAGAGGAAGTTAAAGTGAGA | 57.401 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
29 | 30 | 7.784470 | AGTACAGAGGAAGTTAAAGTGAGAT | 57.216 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
30 | 31 | 8.880991 | AGTACAGAGGAAGTTAAAGTGAGATA | 57.119 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
31 | 32 | 9.310449 | AGTACAGAGGAAGTTAAAGTGAGATAA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
32 | 33 | 9.575783 | GTACAGAGGAAGTTAAAGTGAGATAAG | 57.424 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
33 | 34 | 8.196378 | ACAGAGGAAGTTAAAGTGAGATAAGT | 57.804 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
34 | 35 | 9.310449 | ACAGAGGAAGTTAAAGTGAGATAAGTA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
46 | 47 | 9.587772 | AAAGTGAGATAAGTATATGTGTGTGTC | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
47 | 48 | 8.293699 | AGTGAGATAAGTATATGTGTGTGTCA | 57.706 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
48 | 49 | 8.918116 | AGTGAGATAAGTATATGTGTGTGTCAT | 58.082 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
49 | 50 | 9.186323 | GTGAGATAAGTATATGTGTGTGTCATC | 57.814 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
50 | 51 | 8.912988 | TGAGATAAGTATATGTGTGTGTCATCA | 58.087 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
51 | 52 | 9.920133 | GAGATAAGTATATGTGTGTGTCATCAT | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
52 | 53 | 9.920133 | AGATAAGTATATGTGTGTGTCATCATC | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
53 | 54 | 9.920133 | GATAAGTATATGTGTGTGTCATCATCT | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
56 | 57 | 7.374272 | AGTATATGTGTGTGTCATCATCTAGC | 58.626 | 38.462 | 0.00 | 0.00 | 0.00 | 3.42 |
57 | 58 | 4.750021 | ATGTGTGTGTCATCATCTAGCT | 57.250 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
58 | 59 | 3.853475 | TGTGTGTGTCATCATCTAGCTG | 58.147 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
59 | 60 | 3.193263 | GTGTGTGTCATCATCTAGCTGG | 58.807 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
60 | 61 | 2.208431 | GTGTGTCATCATCTAGCTGGC | 58.792 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
61 | 62 | 2.113807 | TGTGTCATCATCTAGCTGGCT | 58.886 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
62 | 63 | 3.068732 | GTGTGTCATCATCTAGCTGGCTA | 59.931 | 47.826 | 0.00 | 2.23 | 0.00 | 3.93 |
63 | 64 | 3.320256 | TGTGTCATCATCTAGCTGGCTAG | 59.680 | 47.826 | 19.99 | 19.99 | 45.38 | 3.42 |
71 | 72 | 2.601905 | TCTAGCTGGCTAGATGCATGA | 58.398 | 47.619 | 23.38 | 5.12 | 46.94 | 3.07 |
72 | 73 | 2.298446 | TCTAGCTGGCTAGATGCATGAC | 59.702 | 50.000 | 23.38 | 0.00 | 46.94 | 3.06 |
73 | 74 | 0.835276 | AGCTGGCTAGATGCATGACA | 59.165 | 50.000 | 2.46 | 0.00 | 45.15 | 3.58 |
74 | 75 | 1.420514 | AGCTGGCTAGATGCATGACAT | 59.579 | 47.619 | 2.46 | 0.00 | 45.15 | 3.06 |
75 | 76 | 2.158652 | AGCTGGCTAGATGCATGACATT | 60.159 | 45.455 | 2.46 | 0.00 | 45.15 | 2.71 |
76 | 77 | 2.031069 | GCTGGCTAGATGCATGACATTG | 60.031 | 50.000 | 2.46 | 0.00 | 45.15 | 2.82 |
77 | 78 | 1.951602 | TGGCTAGATGCATGACATTGC | 59.048 | 47.619 | 2.46 | 0.00 | 45.15 | 3.56 |
90 | 91 | 7.775397 | GCATGACATTGCAATTAAGGTTAAT | 57.225 | 32.000 | 9.83 | 0.77 | 42.31 | 1.40 |
91 | 92 | 7.623770 | GCATGACATTGCAATTAAGGTTAATG | 58.376 | 34.615 | 9.83 | 12.67 | 42.31 | 1.90 |
92 | 93 | 7.278424 | GCATGACATTGCAATTAAGGTTAATGT | 59.722 | 33.333 | 9.83 | 1.53 | 42.31 | 2.71 |
93 | 94 | 8.597227 | CATGACATTGCAATTAAGGTTAATGTG | 58.403 | 33.333 | 9.83 | 0.00 | 38.45 | 3.21 |
94 | 95 | 7.095910 | TGACATTGCAATTAAGGTTAATGTGG | 58.904 | 34.615 | 9.83 | 0.00 | 38.45 | 4.17 |
95 | 96 | 6.405538 | ACATTGCAATTAAGGTTAATGTGGG | 58.594 | 36.000 | 9.83 | 0.00 | 37.36 | 4.61 |
96 | 97 | 4.464069 | TGCAATTAAGGTTAATGTGGGC | 57.536 | 40.909 | 0.00 | 0.52 | 33.85 | 5.36 |
97 | 98 | 3.196685 | TGCAATTAAGGTTAATGTGGGCC | 59.803 | 43.478 | 0.00 | 0.00 | 33.85 | 5.80 |
98 | 99 | 3.736740 | GCAATTAAGGTTAATGTGGGCCG | 60.737 | 47.826 | 0.00 | 0.00 | 33.85 | 6.13 |
99 | 100 | 2.131776 | TTAAGGTTAATGTGGGCCGG | 57.868 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
100 | 101 | 0.256464 | TAAGGTTAATGTGGGCCGGG | 59.744 | 55.000 | 2.18 | 0.00 | 0.00 | 5.73 |
101 | 102 | 2.441348 | GGTTAATGTGGGCCGGGG | 60.441 | 66.667 | 2.18 | 0.00 | 0.00 | 5.73 |
102 | 103 | 2.678470 | GTTAATGTGGGCCGGGGA | 59.322 | 61.111 | 2.18 | 0.00 | 0.00 | 4.81 |
103 | 104 | 1.000646 | GTTAATGTGGGCCGGGGAA | 60.001 | 57.895 | 2.18 | 0.00 | 0.00 | 3.97 |
104 | 105 | 1.035385 | GTTAATGTGGGCCGGGGAAG | 61.035 | 60.000 | 2.18 | 0.00 | 0.00 | 3.46 |
105 | 106 | 2.218115 | TTAATGTGGGCCGGGGAAGG | 62.218 | 60.000 | 2.18 | 0.00 | 0.00 | 3.46 |
122 | 123 | 4.265893 | GGAAGGGAATTGAGAGGAGAAAC | 58.734 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
177 | 178 | 6.361433 | TCAGAACATCAAGTCCAAAAAGGTA | 58.639 | 36.000 | 0.00 | 0.00 | 39.02 | 3.08 |
191 | 192 | 7.494298 | GTCCAAAAAGGTAAAAGAAGCATTTGA | 59.506 | 33.333 | 0.00 | 0.00 | 39.02 | 2.69 |
199 | 200 | 6.524586 | GGTAAAAGAAGCATTTGAGATTGTCG | 59.475 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
213 | 214 | 7.290110 | TGAGATTGTCGACCTACATATCAAT | 57.710 | 36.000 | 14.12 | 2.32 | 0.00 | 2.57 |
221 | 222 | 7.501225 | TGTCGACCTACATATCAATAGTGAAGA | 59.499 | 37.037 | 14.12 | 0.00 | 37.30 | 2.87 |
232 | 233 | 7.706281 | ATCAATAGTGAAGAATGTAAGCGAG | 57.294 | 36.000 | 0.00 | 0.00 | 37.30 | 5.03 |
251 | 252 | 5.594725 | AGCGAGTCACAATTAGAGGAGAATA | 59.405 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
258 | 285 | 9.178758 | GTCACAATTAGAGGAGAATAAAACCAT | 57.821 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
301 | 328 | 2.257207 | TGTTAGCTAGGTGCAGTCCTT | 58.743 | 47.619 | 4.27 | 0.00 | 45.94 | 3.36 |
307 | 334 | 2.884639 | GCTAGGTGCAGTCCTTTTTCAA | 59.115 | 45.455 | 0.51 | 0.00 | 42.31 | 2.69 |
313 | 340 | 4.293415 | GTGCAGTCCTTTTTCAATCACAG | 58.707 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
319 | 346 | 7.651808 | CAGTCCTTTTTCAATCACAGTTATGT | 58.348 | 34.615 | 0.00 | 0.00 | 41.57 | 2.29 |
383 | 410 | 6.351327 | GTGCAACTGTGATATACTTTCTCC | 57.649 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
384 | 411 | 5.005779 | GTGCAACTGTGATATACTTTCTCCG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
385 | 412 | 5.109903 | GCAACTGTGATATACTTTCTCCGT | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
386 | 413 | 5.581085 | GCAACTGTGATATACTTTCTCCGTT | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
387 | 414 | 6.092259 | GCAACTGTGATATACTTTCTCCGTTT | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
388 | 415 | 7.674240 | GCAACTGTGATATACTTTCTCCGTTTC | 60.674 | 40.741 | 0.00 | 0.00 | 0.00 | 2.78 |
389 | 416 | 7.171630 | ACTGTGATATACTTTCTCCGTTTCT | 57.828 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
390 | 417 | 8.289939 | ACTGTGATATACTTTCTCCGTTTCTA | 57.710 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
391 | 418 | 8.746530 | ACTGTGATATACTTTCTCCGTTTCTAA | 58.253 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
392 | 419 | 9.582431 | CTGTGATATACTTTCTCCGTTTCTAAA | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
478 | 505 | 9.944376 | TTAGAGTGTAGATTCACTTATTTTGCT | 57.056 | 29.630 | 0.98 | 0.00 | 46.81 | 3.91 |
479 | 506 | 8.485976 | AGAGTGTAGATTCACTTATTTTGCTC | 57.514 | 34.615 | 0.98 | 0.00 | 46.81 | 4.26 |
480 | 507 | 7.550906 | AGAGTGTAGATTCACTTATTTTGCTCC | 59.449 | 37.037 | 0.98 | 0.00 | 46.81 | 4.70 |
481 | 508 | 6.313905 | AGTGTAGATTCACTTATTTTGCTCCG | 59.686 | 38.462 | 0.00 | 0.00 | 44.92 | 4.63 |
482 | 509 | 6.092259 | GTGTAGATTCACTTATTTTGCTCCGT | 59.908 | 38.462 | 0.00 | 0.00 | 35.68 | 4.69 |
483 | 510 | 7.277098 | GTGTAGATTCACTTATTTTGCTCCGTA | 59.723 | 37.037 | 0.00 | 0.00 | 35.68 | 4.02 |
484 | 511 | 7.985184 | TGTAGATTCACTTATTTTGCTCCGTAT | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
485 | 512 | 7.484035 | AGATTCACTTATTTTGCTCCGTATC | 57.516 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
486 | 513 | 7.275920 | AGATTCACTTATTTTGCTCCGTATCT | 58.724 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
487 | 514 | 8.421784 | AGATTCACTTATTTTGCTCCGTATCTA | 58.578 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
488 | 515 | 8.958119 | ATTCACTTATTTTGCTCCGTATCTAA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
489 | 516 | 8.958119 | TTCACTTATTTTGCTCCGTATCTAAT | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
490 | 517 | 8.958119 | TCACTTATTTTGCTCCGTATCTAATT | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
498 | 525 | 9.781834 | TTTTGCTCCGTATCTAATTATTTGTTG | 57.218 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
499 | 526 | 7.490962 | TGCTCCGTATCTAATTATTTGTTGG | 57.509 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
500 | 527 | 7.276658 | TGCTCCGTATCTAATTATTTGTTGGA | 58.723 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
501 | 528 | 7.771361 | TGCTCCGTATCTAATTATTTGTTGGAA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
502 | 529 | 8.784043 | GCTCCGTATCTAATTATTTGTTGGAAT | 58.216 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
534 | 561 | 9.868160 | AAAAGACTTATATTTAGGAATGGAGGG | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
535 | 562 | 8.814448 | AAGACTTATATTTAGGAATGGAGGGA | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
536 | 563 | 8.442660 | AGACTTATATTTAGGAATGGAGGGAG | 57.557 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
550 | 577 | 4.631234 | TGGAGGGAGTAGTTGGTGATATT | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
581 | 608 | 0.249322 | AAGAGGTCACACCGTTCACG | 60.249 | 55.000 | 0.00 | 0.00 | 44.90 | 4.35 |
588 | 615 | 1.300388 | ACACCGTTCACGTACCAGC | 60.300 | 57.895 | 0.00 | 0.00 | 37.74 | 4.85 |
589 | 616 | 1.300311 | CACCGTTCACGTACCAGCA | 60.300 | 57.895 | 0.00 | 0.00 | 37.74 | 4.41 |
592 | 619 | 0.719465 | CCGTTCACGTACCAGCAATC | 59.281 | 55.000 | 0.00 | 0.00 | 37.74 | 2.67 |
598 | 625 | 1.398041 | CACGTACCAGCAATCCATGTG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
639 | 666 | 9.620660 | AAACATTTACTCGGTCATTTATGTTTC | 57.379 | 29.630 | 0.00 | 0.00 | 39.43 | 2.78 |
648 | 1275 | 8.568732 | TCGGTCATTTATGTTTCAAAAGTTTC | 57.431 | 30.769 | 0.00 | 0.00 | 0.00 | 2.78 |
655 | 1282 | 9.701355 | ATTTATGTTTCAAAAGTTTCTTTTGCG | 57.299 | 25.926 | 22.30 | 7.62 | 38.79 | 4.85 |
656 | 1283 | 5.523013 | TGTTTCAAAAGTTTCTTTTGCGG | 57.477 | 34.783 | 22.30 | 7.08 | 38.79 | 5.69 |
667 | 1294 | 6.988522 | AGTTTCTTTTGCGGGTAATATGTTT | 58.011 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
675 | 1302 | 8.522178 | TTTGCGGGTAATATGTTTTAAAAGTG | 57.478 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
677 | 1304 | 6.208994 | TGCGGGTAATATGTTTTAAAAGTGGT | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
680 | 1307 | 7.751793 | CGGGTAATATGTTTTAAAAGTGGTGTC | 59.248 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
684 | 1311 | 4.886247 | TGTTTTAAAAGTGGTGTCCTCG | 57.114 | 40.909 | 0.00 | 0.00 | 0.00 | 4.63 |
706 | 1334 | 9.893305 | CCTCGTGTCAAAATTTAAAATTCTAGT | 57.107 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
759 | 1951 | 0.108281 | GGAACCACGAGAGGGCTAAC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 2.34 |
761 | 1953 | 2.097825 | GAACCACGAGAGGGCTAACTA | 58.902 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
763 | 1955 | 2.032620 | ACCACGAGAGGGCTAACTATG | 58.967 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
764 | 1956 | 1.341531 | CCACGAGAGGGCTAACTATGG | 59.658 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
765 | 1957 | 2.307768 | CACGAGAGGGCTAACTATGGA | 58.692 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
766 | 1958 | 2.894126 | CACGAGAGGGCTAACTATGGAT | 59.106 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
767 | 1959 | 3.322254 | CACGAGAGGGCTAACTATGGATT | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
768 | 1960 | 4.523173 | CACGAGAGGGCTAACTATGGATTA | 59.477 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
815 | 2013 | 2.028284 | CGCTTTAACTACGCGTTGCATA | 59.972 | 45.455 | 20.78 | 9.95 | 41.78 | 3.14 |
828 | 2027 | 1.017177 | TTGCATACACTTCGCCGGTC | 61.017 | 55.000 | 1.90 | 0.00 | 0.00 | 4.79 |
865 | 2064 | 1.216977 | CACGCGGACCACTATCCAA | 59.783 | 57.895 | 12.47 | 0.00 | 38.87 | 3.53 |
938 | 2157 | 2.307137 | GACAGAGTACTCGCCGTCGG | 62.307 | 65.000 | 17.07 | 6.99 | 36.13 | 4.79 |
979 | 2227 | 2.879002 | CAGTGAGTGCTACCGATCAT | 57.121 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
992 | 2240 | 1.268692 | CCGATCATTGGCCATTCGTTG | 60.269 | 52.381 | 6.09 | 0.00 | 0.00 | 4.10 |
1028 | 2276 | 4.851179 | GATGGCCCCGTCCCGAAC | 62.851 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
1171 | 2419 | 3.389211 | CGTCGTTCGCGTCGGTTT | 61.389 | 61.111 | 20.86 | 0.00 | 45.34 | 3.27 |
1506 | 2754 | 0.962489 | CTATCGGGAAGGCGAGTGAT | 59.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1809 | 3070 | 4.680537 | AGGTCCGTCGAGCAGGGT | 62.681 | 66.667 | 0.00 | 0.00 | 39.06 | 4.34 |
2289 | 4013 | 5.251601 | TGCTGTATAACGTGCAGTACATA | 57.748 | 39.130 | 0.00 | 0.00 | 41.97 | 2.29 |
2592 | 4319 | 1.504647 | CGCCGCTTGATGCTGATGAT | 61.505 | 55.000 | 0.00 | 0.00 | 40.11 | 2.45 |
2593 | 4320 | 0.040336 | GCCGCTTGATGCTGATGATG | 60.040 | 55.000 | 0.00 | 0.00 | 40.11 | 3.07 |
2597 | 4324 | 2.353579 | CGCTTGATGCTGATGATGAACA | 59.646 | 45.455 | 0.00 | 0.00 | 40.11 | 3.18 |
2603 | 4330 | 4.393990 | TGATGCTGATGATGAACAACTGAC | 59.606 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2608 | 4335 | 4.011698 | TGATGATGAACAACTGACCATGG | 58.988 | 43.478 | 11.19 | 11.19 | 0.00 | 3.66 |
2611 | 4338 | 0.539438 | TGAACAACTGACCATGGGGC | 60.539 | 55.000 | 18.09 | 8.37 | 37.90 | 5.80 |
2627 | 4354 | 3.231734 | GGCATGTGGCGCATATAGA | 57.768 | 52.632 | 14.03 | 0.00 | 46.16 | 1.98 |
2641 | 4368 | 5.174035 | GCGCATATAGATTACGCTAATCCTG | 59.826 | 44.000 | 0.30 | 7.71 | 44.35 | 3.86 |
2642 | 4369 | 6.495706 | CGCATATAGATTACGCTAATCCTGA | 58.504 | 40.000 | 11.62 | 2.69 | 44.35 | 3.86 |
2684 | 4411 | 6.252995 | ACATATTTGGTTGTGTGGGTATCTT | 58.747 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2689 | 4416 | 5.570205 | TGGTTGTGTGGGTATCTTTCTTA | 57.430 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2700 | 4427 | 9.367444 | GTGGGTATCTTTCTTATGTATATTCGG | 57.633 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2701 | 4428 | 8.038944 | TGGGTATCTTTCTTATGTATATTCGGC | 58.961 | 37.037 | 0.00 | 0.00 | 0.00 | 5.54 |
2702 | 4429 | 7.222224 | GGGTATCTTTCTTATGTATATTCGGCG | 59.778 | 40.741 | 0.00 | 0.00 | 0.00 | 6.46 |
2713 | 4440 | 1.937278 | TATTCGGCGGCGAAAATACA | 58.063 | 45.000 | 43.28 | 25.42 | 0.00 | 2.29 |
2716 | 4443 | 1.079875 | TCGGCGGCGAAAATACAGTC | 61.080 | 55.000 | 32.93 | 0.00 | 0.00 | 3.51 |
2743 | 4470 | 1.401552 | CGTGATTTGGCGGATGACAAT | 59.598 | 47.619 | 0.00 | 0.00 | 44.30 | 2.71 |
2745 | 4472 | 1.750206 | TGATTTGGCGGATGACAATGG | 59.250 | 47.619 | 0.00 | 0.00 | 44.30 | 3.16 |
2750 | 4477 | 4.379129 | TTTGGCGGATGACAATGGAACAT | 61.379 | 43.478 | 0.00 | 0.00 | 44.30 | 2.71 |
2751 | 4478 | 6.408083 | TTTGGCGGATGACAATGGAACATG | 62.408 | 45.833 | 0.00 | 0.00 | 44.30 | 3.21 |
2776 | 4503 | 9.117183 | TGATATATGCATCTGATTTTATGAGCC | 57.883 | 33.333 | 0.19 | 0.00 | 0.00 | 4.70 |
2777 | 4504 | 6.770746 | ATATGCATCTGATTTTATGAGCCC | 57.229 | 37.500 | 0.19 | 0.00 | 0.00 | 5.19 |
2779 | 4506 | 4.476297 | TGCATCTGATTTTATGAGCCCAT | 58.524 | 39.130 | 0.00 | 0.00 | 36.81 | 4.00 |
2780 | 4507 | 5.633117 | TGCATCTGATTTTATGAGCCCATA | 58.367 | 37.500 | 0.00 | 0.00 | 34.31 | 2.74 |
2781 | 4508 | 5.474532 | TGCATCTGATTTTATGAGCCCATAC | 59.525 | 40.000 | 0.00 | 0.00 | 35.16 | 2.39 |
2783 | 4510 | 6.128063 | GCATCTGATTTTATGAGCCCATACTC | 60.128 | 42.308 | 0.00 | 0.00 | 35.16 | 2.59 |
2784 | 4511 | 5.869579 | TCTGATTTTATGAGCCCATACTCC | 58.130 | 41.667 | 0.00 | 0.00 | 35.16 | 3.85 |
2785 | 4512 | 4.985538 | TGATTTTATGAGCCCATACTCCC | 58.014 | 43.478 | 0.00 | 0.00 | 35.16 | 4.30 |
2786 | 4513 | 4.665009 | TGATTTTATGAGCCCATACTCCCT | 59.335 | 41.667 | 0.00 | 0.00 | 35.16 | 4.20 |
2787 | 4514 | 4.706842 | TTTTATGAGCCCATACTCCCTC | 57.293 | 45.455 | 0.00 | 0.00 | 35.16 | 4.30 |
2788 | 4515 | 1.924731 | TATGAGCCCATACTCCCTCG | 58.075 | 55.000 | 0.00 | 0.00 | 35.72 | 4.63 |
2789 | 4516 | 0.833834 | ATGAGCCCATACTCCCTCGG | 60.834 | 60.000 | 0.00 | 0.00 | 35.72 | 4.63 |
2791 | 4518 | 1.457831 | AGCCCATACTCCCTCGGTC | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
2792 | 4519 | 2.508751 | GCCCATACTCCCTCGGTCC | 61.509 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
2793 | 4520 | 1.837499 | CCCATACTCCCTCGGTCCC | 60.837 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
2795 | 4522 | 0.828343 | CCATACTCCCTCGGTCCCTC | 60.828 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2796 | 4523 | 0.828343 | CATACTCCCTCGGTCCCTCC | 60.828 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2806 | 5646 | 3.948735 | GGTCCCTCCGTCATTTTGA | 57.051 | 52.632 | 0.00 | 0.00 | 0.00 | 2.69 |
2809 | 5649 | 1.401905 | GTCCCTCCGTCATTTTGATGC | 59.598 | 52.381 | 0.00 | 0.00 | 32.19 | 3.91 |
2827 | 5673 | 5.073428 | TGATGCCATGTAGTTTGTTGGTTA | 58.927 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2836 | 5682 | 8.751335 | CATGTAGTTTGTTGGTTATTTGTCAAC | 58.249 | 33.333 | 0.00 | 0.00 | 40.59 | 3.18 |
2850 | 5696 | 9.821662 | GTTATTTGTCAACCTTAACACATACTC | 57.178 | 33.333 | 7.10 | 0.00 | 0.00 | 2.59 |
2852 | 5698 | 4.901868 | TGTCAACCTTAACACATACTCCC | 58.098 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2855 | 5701 | 4.224370 | TCAACCTTAACACATACTCCCTCC | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2857 | 5703 | 2.764572 | CCTTAACACATACTCCCTCCGT | 59.235 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2858 | 5704 | 3.181478 | CCTTAACACATACTCCCTCCGTC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2859 | 5705 | 1.192428 | AACACATACTCCCTCCGTCC | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2860 | 5706 | 0.686769 | ACACATACTCCCTCCGTCCC | 60.687 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2861 | 5707 | 0.686441 | CACATACTCCCTCCGTCCCA | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2862 | 5708 | 0.042131 | ACATACTCCCTCCGTCCCAA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2863 | 5709 | 0.464452 | CATACTCCCTCCGTCCCAAC | 59.536 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2864 | 5710 | 0.042131 | ATACTCCCTCCGTCCCAACA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2865 | 5711 | 0.042131 | TACTCCCTCCGTCCCAACAT | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2866 | 5712 | 0.042131 | ACTCCCTCCGTCCCAACATA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2867 | 5713 | 1.200519 | CTCCCTCCGTCCCAACATAA | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2868 | 5714 | 1.768870 | CTCCCTCCGTCCCAACATAAT | 59.231 | 52.381 | 0.00 | 0.00 | 0.00 | 1.28 |
2869 | 5715 | 2.172717 | CTCCCTCCGTCCCAACATAATT | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2870 | 5716 | 2.092646 | TCCCTCCGTCCCAACATAATTG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2871 | 5717 | 2.092646 | CCCTCCGTCCCAACATAATTGA | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2872 | 5718 | 2.943033 | CCTCCGTCCCAACATAATTGAC | 59.057 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2873 | 5719 | 3.370527 | CCTCCGTCCCAACATAATTGACT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2874 | 5720 | 3.869065 | TCCGTCCCAACATAATTGACTC | 58.131 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2875 | 5721 | 3.262151 | TCCGTCCCAACATAATTGACTCA | 59.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2876 | 5722 | 4.006989 | CCGTCCCAACATAATTGACTCAA | 58.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2877 | 5723 | 4.142687 | CCGTCCCAACATAATTGACTCAAC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2878 | 5724 | 4.695455 | CGTCCCAACATAATTGACTCAACT | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2879 | 5725 | 5.181245 | CGTCCCAACATAATTGACTCAACTT | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2880 | 5726 | 6.293955 | CGTCCCAACATAATTGACTCAACTTT | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2881 | 5727 | 7.433680 | GTCCCAACATAATTGACTCAACTTTT | 58.566 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
2882 | 5728 | 7.595130 | GTCCCAACATAATTGACTCAACTTTTC | 59.405 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2883 | 5729 | 6.868339 | CCCAACATAATTGACTCAACTTTTCC | 59.132 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
2884 | 5730 | 7.255942 | CCCAACATAATTGACTCAACTTTTCCT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2885 | 5731 | 7.809806 | CCAACATAATTGACTCAACTTTTCCTC | 59.190 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
2886 | 5732 | 7.454260 | ACATAATTGACTCAACTTTTCCTCC | 57.546 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2887 | 5733 | 7.004086 | ACATAATTGACTCAACTTTTCCTCCA | 58.996 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2888 | 5734 | 7.671398 | ACATAATTGACTCAACTTTTCCTCCAT | 59.329 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2889 | 5735 | 5.972107 | ATTGACTCAACTTTTCCTCCATG | 57.028 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
2890 | 5736 | 3.754965 | TGACTCAACTTTTCCTCCATGG | 58.245 | 45.455 | 4.97 | 4.97 | 37.10 | 3.66 |
2891 | 5737 | 2.489722 | GACTCAACTTTTCCTCCATGGC | 59.510 | 50.000 | 6.96 | 0.00 | 35.26 | 4.40 |
2892 | 5738 | 2.108952 | ACTCAACTTTTCCTCCATGGCT | 59.891 | 45.455 | 6.96 | 0.00 | 35.26 | 4.75 |
2893 | 5739 | 2.751806 | CTCAACTTTTCCTCCATGGCTC | 59.248 | 50.000 | 6.96 | 0.00 | 35.26 | 4.70 |
2894 | 5740 | 1.821136 | CAACTTTTCCTCCATGGCTCC | 59.179 | 52.381 | 6.96 | 0.00 | 35.26 | 4.70 |
2895 | 5741 | 0.035056 | ACTTTTCCTCCATGGCTCCG | 60.035 | 55.000 | 6.96 | 0.00 | 35.26 | 4.63 |
2896 | 5742 | 0.035056 | CTTTTCCTCCATGGCTCCGT | 60.035 | 55.000 | 6.96 | 0.00 | 35.26 | 4.69 |
2897 | 5743 | 0.035439 | TTTTCCTCCATGGCTCCGTC | 60.035 | 55.000 | 6.96 | 0.00 | 35.26 | 4.79 |
2898 | 5744 | 2.238847 | TTTCCTCCATGGCTCCGTCG | 62.239 | 60.000 | 6.96 | 0.00 | 35.26 | 5.12 |
2899 | 5745 | 4.899239 | CCTCCATGGCTCCGTCGC | 62.899 | 72.222 | 6.96 | 0.00 | 0.00 | 5.19 |
2900 | 5746 | 4.147449 | CTCCATGGCTCCGTCGCA | 62.147 | 66.667 | 6.96 | 0.00 | 0.00 | 5.10 |
2901 | 5747 | 3.664025 | CTCCATGGCTCCGTCGCAA | 62.664 | 63.158 | 6.96 | 0.00 | 0.00 | 4.85 |
2902 | 5748 | 2.514592 | CCATGGCTCCGTCGCAAT | 60.515 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
2903 | 5749 | 1.227527 | CCATGGCTCCGTCGCAATA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 1.90 |
2904 | 5750 | 1.498865 | CCATGGCTCCGTCGCAATAC | 61.499 | 60.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2905 | 5751 | 0.809636 | CATGGCTCCGTCGCAATACA | 60.810 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2906 | 5752 | 0.107897 | ATGGCTCCGTCGCAATACAA | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2907 | 5753 | 0.107897 | TGGCTCCGTCGCAATACAAT | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2908 | 5754 | 0.304705 | GGCTCCGTCGCAATACAATG | 59.695 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2909 | 5755 | 1.006832 | GCTCCGTCGCAATACAATGT | 58.993 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2910 | 5756 | 1.396996 | GCTCCGTCGCAATACAATGTT | 59.603 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
2911 | 5757 | 2.787723 | GCTCCGTCGCAATACAATGTTG | 60.788 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2912 | 5758 | 2.670905 | CTCCGTCGCAATACAATGTTGA | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2913 | 5759 | 2.670905 | TCCGTCGCAATACAATGTTGAG | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2914 | 5760 | 2.415168 | CCGTCGCAATACAATGTTGAGT | 59.585 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2915 | 5761 | 3.483574 | CCGTCGCAATACAATGTTGAGTC | 60.484 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
2916 | 5762 | 3.122780 | CGTCGCAATACAATGTTGAGTCA | 59.877 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2917 | 5763 | 4.201714 | CGTCGCAATACAATGTTGAGTCAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2918 | 5764 | 5.631026 | GTCGCAATACAATGTTGAGTCATT | 58.369 | 37.500 | 0.00 | 0.00 | 38.38 | 2.57 |
2919 | 5765 | 6.086222 | GTCGCAATACAATGTTGAGTCATTT | 58.914 | 36.000 | 0.00 | 0.00 | 36.10 | 2.32 |
2920 | 5766 | 7.240674 | GTCGCAATACAATGTTGAGTCATTTA | 58.759 | 34.615 | 0.00 | 0.00 | 36.10 | 1.40 |
2921 | 5767 | 7.910162 | GTCGCAATACAATGTTGAGTCATTTAT | 59.090 | 33.333 | 0.00 | 0.00 | 36.10 | 1.40 |
2922 | 5768 | 8.458052 | TCGCAATACAATGTTGAGTCATTTATT | 58.542 | 29.630 | 0.00 | 0.00 | 36.10 | 1.40 |
2923 | 5769 | 9.075519 | CGCAATACAATGTTGAGTCATTTATTT | 57.924 | 29.630 | 0.00 | 0.00 | 36.10 | 1.40 |
2927 | 5773 | 9.874205 | ATACAATGTTGAGTCATTTATTTTGGG | 57.126 | 29.630 | 0.00 | 0.00 | 36.10 | 4.12 |
2928 | 5774 | 7.961351 | ACAATGTTGAGTCATTTATTTTGGGA | 58.039 | 30.769 | 0.00 | 0.00 | 36.10 | 4.37 |
2929 | 5775 | 7.872483 | ACAATGTTGAGTCATTTATTTTGGGAC | 59.128 | 33.333 | 0.00 | 0.00 | 36.10 | 4.46 |
2930 | 5776 | 6.007936 | TGTTGAGTCATTTATTTTGGGACG | 57.992 | 37.500 | 0.00 | 0.00 | 33.84 | 4.79 |
2931 | 5777 | 5.765677 | TGTTGAGTCATTTATTTTGGGACGA | 59.234 | 36.000 | 0.00 | 0.00 | 33.84 | 4.20 |
2932 | 5778 | 6.263392 | TGTTGAGTCATTTATTTTGGGACGAA | 59.737 | 34.615 | 0.00 | 0.00 | 33.84 | 3.85 |
2933 | 5779 | 6.494893 | TGAGTCATTTATTTTGGGACGAAG | 57.505 | 37.500 | 0.00 | 0.00 | 33.84 | 3.79 |
2934 | 5780 | 5.414454 | TGAGTCATTTATTTTGGGACGAAGG | 59.586 | 40.000 | 0.00 | 0.00 | 33.84 | 3.46 |
2935 | 5781 | 5.566469 | AGTCATTTATTTTGGGACGAAGGA | 58.434 | 37.500 | 0.00 | 0.00 | 33.84 | 3.36 |
2936 | 5782 | 6.007703 | AGTCATTTATTTTGGGACGAAGGAA | 58.992 | 36.000 | 0.00 | 0.00 | 33.84 | 3.36 |
2937 | 5783 | 6.151144 | AGTCATTTATTTTGGGACGAAGGAAG | 59.849 | 38.462 | 0.00 | 0.00 | 33.84 | 3.46 |
2938 | 5784 | 6.007703 | TCATTTATTTTGGGACGAAGGAAGT | 58.992 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2939 | 5785 | 7.120138 | GTCATTTATTTTGGGACGAAGGAAGTA | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2940 | 5786 | 7.832187 | TCATTTATTTTGGGACGAAGGAAGTAT | 59.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2941 | 5787 | 9.116067 | CATTTATTTTGGGACGAAGGAAGTATA | 57.884 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2942 | 5788 | 9.862149 | ATTTATTTTGGGACGAAGGAAGTATAT | 57.138 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
2943 | 5789 | 8.897872 | TTATTTTGGGACGAAGGAAGTATATC | 57.102 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
2944 | 5790 | 5.943349 | TTTGGGACGAAGGAAGTATATCA | 57.057 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
2945 | 5791 | 5.943349 | TTGGGACGAAGGAAGTATATCAA | 57.057 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2968 | 5814 | 8.920665 | TCAATTTAAAATCCGTGTTTGCTAATG | 58.079 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2997 | 5843 | 7.756722 | CAGTTGCCTGAAATTATTCTAGGTTTG | 59.243 | 37.037 | 8.53 | 1.60 | 41.50 | 2.93 |
3055 | 5901 | 0.772124 | AGTCCTCCCCAGCCTCAAAA | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3056 | 5902 | 0.332972 | GTCCTCCCCAGCCTCAAAAT | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3083 | 5929 | 1.229082 | TCCTCAGCCCGTAACCAGT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
3131 | 5977 | 1.747709 | TTGAAAACCGTTCGGGACAA | 58.252 | 45.000 | 15.66 | 11.74 | 39.97 | 3.18 |
3204 | 6050 | 1.305465 | TAGCCAGGCTTGGTACGGA | 60.305 | 57.895 | 22.26 | 0.00 | 46.80 | 4.69 |
3205 | 6051 | 1.327690 | TAGCCAGGCTTGGTACGGAG | 61.328 | 60.000 | 22.26 | 0.00 | 46.80 | 4.63 |
3596 | 6444 | 1.458639 | GGGCAAGCTGTGAACAAGCT | 61.459 | 55.000 | 0.00 | 0.00 | 41.08 | 3.74 |
3608 | 6456 | 0.035458 | AACAAGCTGGAGGACGAAGG | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3609 | 6457 | 1.743252 | CAAGCTGGAGGACGAAGGC | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
3610 | 6458 | 2.960688 | AAGCTGGAGGACGAAGGCC | 61.961 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
3611 | 6459 | 3.706373 | GCTGGAGGACGAAGGCCA | 61.706 | 66.667 | 5.01 | 0.00 | 0.00 | 5.36 |
3612 | 6460 | 3.068881 | CTGGAGGACGAAGGCCAA | 58.931 | 61.111 | 5.01 | 0.00 | 0.00 | 4.52 |
3613 | 6461 | 1.078848 | CTGGAGGACGAAGGCCAAG | 60.079 | 63.158 | 5.01 | 0.00 | 0.00 | 3.61 |
3614 | 6462 | 2.269241 | GGAGGACGAAGGCCAAGG | 59.731 | 66.667 | 5.01 | 0.00 | 0.00 | 3.61 |
3615 | 6463 | 2.436824 | GAGGACGAAGGCCAAGGC | 60.437 | 66.667 | 5.01 | 1.52 | 41.06 | 4.35 |
3627 | 6475 | 2.672996 | CAAGGCCCAAGGGTGACG | 60.673 | 66.667 | 7.05 | 0.00 | 37.65 | 4.35 |
3628 | 6476 | 2.852075 | AAGGCCCAAGGGTGACGA | 60.852 | 61.111 | 7.05 | 0.00 | 37.65 | 4.20 |
3634 | 6482 | 1.336795 | GCCCAAGGGTGACGAAAAATG | 60.337 | 52.381 | 7.05 | 0.00 | 37.65 | 2.32 |
3642 | 6490 | 6.405278 | AGGGTGACGAAAAATGATCTTTTT | 57.595 | 33.333 | 12.28 | 12.28 | 34.64 | 1.94 |
3685 | 6535 | 2.535836 | TAGGCGGGCCCTTTAAAATT | 57.464 | 45.000 | 22.43 | 0.00 | 43.06 | 1.82 |
3686 | 6536 | 2.535836 | AGGCGGGCCCTTTAAAATTA | 57.464 | 45.000 | 22.43 | 0.00 | 43.06 | 1.40 |
3687 | 6537 | 2.384828 | AGGCGGGCCCTTTAAAATTAG | 58.615 | 47.619 | 22.43 | 0.04 | 43.06 | 1.73 |
3688 | 6538 | 2.024751 | AGGCGGGCCCTTTAAAATTAGA | 60.025 | 45.455 | 22.43 | 0.00 | 43.06 | 2.10 |
3689 | 6539 | 2.761767 | GGCGGGCCCTTTAAAATTAGAA | 59.238 | 45.455 | 22.43 | 0.00 | 0.00 | 2.10 |
3690 | 6540 | 3.386726 | GGCGGGCCCTTTAAAATTAGAAT | 59.613 | 43.478 | 22.43 | 0.00 | 0.00 | 2.40 |
3696 | 6546 | 5.453339 | GGCCCTTTAAAATTAGAATCCTGCC | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3714 | 6564 | 4.506271 | CCTGCCTTGCCTGATAGACATATT | 60.506 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
3723 | 6573 | 7.056006 | TGCCTGATAGACATATTTGTTGTCAT | 58.944 | 34.615 | 6.59 | 0.00 | 44.73 | 3.06 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 8.483758 | TCACTTTAACTTCCTCTGTACTTTCTT | 58.516 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1 | 2 | 8.019656 | TCACTTTAACTTCCTCTGTACTTTCT | 57.980 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2 | 3 | 8.142551 | TCTCACTTTAACTTCCTCTGTACTTTC | 58.857 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
3 | 4 | 8.019656 | TCTCACTTTAACTTCCTCTGTACTTT | 57.980 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
4 | 5 | 7.598759 | TCTCACTTTAACTTCCTCTGTACTT | 57.401 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5 | 6 | 7.784470 | ATCTCACTTTAACTTCCTCTGTACT | 57.216 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
6 | 7 | 9.575783 | CTTATCTCACTTTAACTTCCTCTGTAC | 57.424 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
7 | 8 | 9.310449 | ACTTATCTCACTTTAACTTCCTCTGTA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
8 | 9 | 8.196378 | ACTTATCTCACTTTAACTTCCTCTGT | 57.804 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
20 | 21 | 9.587772 | GACACACACATATACTTATCTCACTTT | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
21 | 22 | 8.749354 | TGACACACACATATACTTATCTCACTT | 58.251 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
22 | 23 | 8.293699 | TGACACACACATATACTTATCTCACT | 57.706 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
23 | 24 | 9.186323 | GATGACACACACATATACTTATCTCAC | 57.814 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
24 | 25 | 8.912988 | TGATGACACACACATATACTTATCTCA | 58.087 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
25 | 26 | 9.920133 | ATGATGACACACACATATACTTATCTC | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
26 | 27 | 9.920133 | GATGATGACACACACATATACTTATCT | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
27 | 28 | 9.920133 | AGATGATGACACACACATATACTTATC | 57.080 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
30 | 31 | 7.869937 | GCTAGATGATGACACACACATATACTT | 59.130 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
31 | 32 | 7.232330 | AGCTAGATGATGACACACACATATACT | 59.768 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
32 | 33 | 7.328005 | CAGCTAGATGATGACACACACATATAC | 59.672 | 40.741 | 0.40 | 0.00 | 33.12 | 1.47 |
33 | 34 | 7.373493 | CAGCTAGATGATGACACACACATATA | 58.627 | 38.462 | 0.40 | 0.00 | 33.12 | 0.86 |
34 | 35 | 6.221659 | CAGCTAGATGATGACACACACATAT | 58.778 | 40.000 | 0.40 | 0.00 | 33.12 | 1.78 |
35 | 36 | 5.452356 | CCAGCTAGATGATGACACACACATA | 60.452 | 44.000 | 10.19 | 0.00 | 33.12 | 2.29 |
36 | 37 | 4.439968 | CAGCTAGATGATGACACACACAT | 58.560 | 43.478 | 0.40 | 0.00 | 33.12 | 3.21 |
37 | 38 | 3.368739 | CCAGCTAGATGATGACACACACA | 60.369 | 47.826 | 10.19 | 0.00 | 33.12 | 3.72 |
38 | 39 | 3.193263 | CCAGCTAGATGATGACACACAC | 58.807 | 50.000 | 10.19 | 0.00 | 33.12 | 3.82 |
39 | 40 | 2.419159 | GCCAGCTAGATGATGACACACA | 60.419 | 50.000 | 10.19 | 0.00 | 33.12 | 3.72 |
40 | 41 | 2.158986 | AGCCAGCTAGATGATGACACAC | 60.159 | 50.000 | 10.19 | 0.00 | 33.12 | 3.82 |
41 | 42 | 2.113807 | AGCCAGCTAGATGATGACACA | 58.886 | 47.619 | 10.19 | 0.00 | 33.12 | 3.72 |
42 | 43 | 2.906691 | AGCCAGCTAGATGATGACAC | 57.093 | 50.000 | 10.19 | 0.00 | 33.12 | 3.67 |
43 | 44 | 3.837355 | TCTAGCCAGCTAGATGATGACA | 58.163 | 45.455 | 22.42 | 1.39 | 46.94 | 3.58 |
52 | 53 | 2.036862 | TGTCATGCATCTAGCCAGCTAG | 59.963 | 50.000 | 18.68 | 18.68 | 45.38 | 3.42 |
53 | 54 | 2.041701 | TGTCATGCATCTAGCCAGCTA | 58.958 | 47.619 | 0.00 | 0.00 | 44.83 | 3.32 |
54 | 55 | 0.835276 | TGTCATGCATCTAGCCAGCT | 59.165 | 50.000 | 0.00 | 0.00 | 44.83 | 4.24 |
55 | 56 | 1.893544 | ATGTCATGCATCTAGCCAGC | 58.106 | 50.000 | 0.00 | 0.00 | 44.83 | 4.85 |
56 | 57 | 2.031069 | GCAATGTCATGCATCTAGCCAG | 60.031 | 50.000 | 0.00 | 0.00 | 45.70 | 4.85 |
57 | 58 | 1.951602 | GCAATGTCATGCATCTAGCCA | 59.048 | 47.619 | 0.00 | 0.00 | 45.70 | 4.75 |
58 | 59 | 2.701073 | GCAATGTCATGCATCTAGCC | 57.299 | 50.000 | 0.00 | 0.00 | 45.70 | 3.93 |
66 | 67 | 7.278424 | ACATTAACCTTAATTGCAATGTCATGC | 59.722 | 33.333 | 13.82 | 0.00 | 37.75 | 4.06 |
67 | 68 | 8.597227 | CACATTAACCTTAATTGCAATGTCATG | 58.403 | 33.333 | 13.82 | 13.36 | 35.12 | 3.07 |
68 | 69 | 7.765360 | CCACATTAACCTTAATTGCAATGTCAT | 59.235 | 33.333 | 13.82 | 0.00 | 35.12 | 3.06 |
69 | 70 | 7.095910 | CCACATTAACCTTAATTGCAATGTCA | 58.904 | 34.615 | 13.82 | 0.00 | 35.12 | 3.58 |
70 | 71 | 6.534793 | CCCACATTAACCTTAATTGCAATGTC | 59.465 | 38.462 | 13.82 | 0.00 | 35.12 | 3.06 |
71 | 72 | 6.405538 | CCCACATTAACCTTAATTGCAATGT | 58.594 | 36.000 | 13.82 | 3.29 | 37.14 | 2.71 |
72 | 73 | 5.294060 | GCCCACATTAACCTTAATTGCAATG | 59.706 | 40.000 | 13.82 | 2.58 | 31.28 | 2.82 |
73 | 74 | 5.427378 | GCCCACATTAACCTTAATTGCAAT | 58.573 | 37.500 | 5.99 | 5.99 | 31.28 | 3.56 |
74 | 75 | 4.323104 | GGCCCACATTAACCTTAATTGCAA | 60.323 | 41.667 | 0.00 | 0.00 | 31.28 | 4.08 |
75 | 76 | 3.196685 | GGCCCACATTAACCTTAATTGCA | 59.803 | 43.478 | 0.00 | 0.00 | 31.28 | 4.08 |
76 | 77 | 3.736740 | CGGCCCACATTAACCTTAATTGC | 60.737 | 47.826 | 0.00 | 0.00 | 31.28 | 3.56 |
77 | 78 | 3.181480 | CCGGCCCACATTAACCTTAATTG | 60.181 | 47.826 | 0.00 | 0.00 | 31.28 | 2.32 |
78 | 79 | 3.028130 | CCGGCCCACATTAACCTTAATT | 58.972 | 45.455 | 0.00 | 0.00 | 31.28 | 1.40 |
79 | 80 | 2.661718 | CCGGCCCACATTAACCTTAAT | 58.338 | 47.619 | 0.00 | 0.00 | 33.82 | 1.40 |
80 | 81 | 1.341187 | CCCGGCCCACATTAACCTTAA | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
81 | 82 | 0.256464 | CCCGGCCCACATTAACCTTA | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
82 | 83 | 1.000145 | CCCGGCCCACATTAACCTT | 60.000 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
83 | 84 | 2.680965 | CCCGGCCCACATTAACCT | 59.319 | 61.111 | 0.00 | 0.00 | 0.00 | 3.50 |
84 | 85 | 2.441348 | CCCCGGCCCACATTAACC | 60.441 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
85 | 86 | 1.000646 | TTCCCCGGCCCACATTAAC | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 2.01 |
86 | 87 | 1.304952 | CTTCCCCGGCCCACATTAA | 59.695 | 57.895 | 0.00 | 0.00 | 0.00 | 1.40 |
87 | 88 | 2.685534 | CCTTCCCCGGCCCACATTA | 61.686 | 63.158 | 0.00 | 0.00 | 0.00 | 1.90 |
88 | 89 | 4.060667 | CCTTCCCCGGCCCACATT | 62.061 | 66.667 | 0.00 | 0.00 | 0.00 | 2.71 |
93 | 94 | 3.751018 | AATTCCCTTCCCCGGCCC | 61.751 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
94 | 95 | 2.442087 | CAATTCCCTTCCCCGGCC | 60.442 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
95 | 96 | 1.453928 | CTCAATTCCCTTCCCCGGC | 60.454 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
96 | 97 | 0.181350 | CTCTCAATTCCCTTCCCCGG | 59.819 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
97 | 98 | 0.181350 | CCTCTCAATTCCCTTCCCCG | 59.819 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
98 | 99 | 1.492599 | CTCCTCTCAATTCCCTTCCCC | 59.507 | 57.143 | 0.00 | 0.00 | 0.00 | 4.81 |
99 | 100 | 2.482494 | TCTCCTCTCAATTCCCTTCCC | 58.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
100 | 101 | 4.265893 | GTTTCTCCTCTCAATTCCCTTCC | 58.734 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
101 | 102 | 4.263506 | TGGTTTCTCCTCTCAATTCCCTTC | 60.264 | 45.833 | 0.00 | 0.00 | 37.07 | 3.46 |
102 | 103 | 3.657727 | TGGTTTCTCCTCTCAATTCCCTT | 59.342 | 43.478 | 0.00 | 0.00 | 37.07 | 3.95 |
103 | 104 | 3.260205 | TGGTTTCTCCTCTCAATTCCCT | 58.740 | 45.455 | 0.00 | 0.00 | 37.07 | 4.20 |
104 | 105 | 3.721087 | TGGTTTCTCCTCTCAATTCCC | 57.279 | 47.619 | 0.00 | 0.00 | 37.07 | 3.97 |
105 | 106 | 6.830838 | ACAATATGGTTTCTCCTCTCAATTCC | 59.169 | 38.462 | 0.00 | 0.00 | 37.07 | 3.01 |
106 | 107 | 7.872113 | ACAATATGGTTTCTCCTCTCAATTC | 57.128 | 36.000 | 0.00 | 0.00 | 37.07 | 2.17 |
107 | 108 | 8.655935 | AAACAATATGGTTTCTCCTCTCAATT | 57.344 | 30.769 | 2.11 | 0.00 | 36.26 | 2.32 |
108 | 109 | 9.927081 | ATAAACAATATGGTTTCTCCTCTCAAT | 57.073 | 29.630 | 11.59 | 0.00 | 41.07 | 2.57 |
155 | 156 | 7.654022 | TTTACCTTTTTGGACTTGATGTTCT | 57.346 | 32.000 | 0.00 | 0.00 | 39.71 | 3.01 |
177 | 178 | 6.145535 | GTCGACAATCTCAAATGCTTCTTTT | 58.854 | 36.000 | 11.55 | 0.00 | 0.00 | 2.27 |
191 | 192 | 8.300286 | CACTATTGATATGTAGGTCGACAATCT | 58.700 | 37.037 | 18.91 | 7.98 | 31.83 | 2.40 |
199 | 200 | 9.988815 | ACATTCTTCACTATTGATATGTAGGTC | 57.011 | 33.333 | 0.00 | 0.00 | 31.76 | 3.85 |
213 | 214 | 5.048294 | TGTGACTCGCTTACATTCTTCACTA | 60.048 | 40.000 | 0.00 | 0.00 | 34.51 | 2.74 |
221 | 222 | 5.812642 | CCTCTAATTGTGACTCGCTTACATT | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
229 | 230 | 8.596380 | GTTTTATTCTCCTCTAATTGTGACTCG | 58.404 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
232 | 233 | 8.561738 | TGGTTTTATTCTCCTCTAATTGTGAC | 57.438 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
266 | 293 | 9.174166 | ACCTAGCTAACATATCGTTTCAATTTT | 57.826 | 29.630 | 0.00 | 0.00 | 39.14 | 1.82 |
274 | 301 | 4.099573 | ACTGCACCTAGCTAACATATCGTT | 59.900 | 41.667 | 0.00 | 0.00 | 45.94 | 3.85 |
301 | 328 | 7.860373 | GCACTTGTACATAACTGTGATTGAAAA | 59.140 | 33.333 | 0.00 | 0.00 | 36.23 | 2.29 |
307 | 334 | 6.172630 | TCATGCACTTGTACATAACTGTGAT | 58.827 | 36.000 | 0.00 | 0.00 | 36.23 | 3.06 |
313 | 340 | 6.968904 | CCAAAGATCATGCACTTGTACATAAC | 59.031 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
319 | 346 | 4.032960 | ACCCAAAGATCATGCACTTGTA | 57.967 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
457 | 484 | 6.092259 | ACGGAGCAAAATAAGTGAATCTACAC | 59.908 | 38.462 | 0.00 | 0.00 | 40.60 | 2.90 |
458 | 485 | 6.170506 | ACGGAGCAAAATAAGTGAATCTACA | 58.829 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
459 | 486 | 6.663944 | ACGGAGCAAAATAAGTGAATCTAC | 57.336 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
460 | 487 | 8.421784 | AGATACGGAGCAAAATAAGTGAATCTA | 58.578 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
461 | 488 | 7.275920 | AGATACGGAGCAAAATAAGTGAATCT | 58.724 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
462 | 489 | 7.484035 | AGATACGGAGCAAAATAAGTGAATC | 57.516 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
463 | 490 | 8.958119 | TTAGATACGGAGCAAAATAAGTGAAT | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
464 | 491 | 8.958119 | ATTAGATACGGAGCAAAATAAGTGAA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
465 | 492 | 8.958119 | AATTAGATACGGAGCAAAATAAGTGA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
472 | 499 | 9.781834 | CAACAAATAATTAGATACGGAGCAAAA | 57.218 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
473 | 500 | 8.402472 | CCAACAAATAATTAGATACGGAGCAAA | 58.598 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
474 | 501 | 7.771361 | TCCAACAAATAATTAGATACGGAGCAA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
475 | 502 | 7.276658 | TCCAACAAATAATTAGATACGGAGCA | 58.723 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
476 | 503 | 7.724305 | TCCAACAAATAATTAGATACGGAGC | 57.276 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
508 | 535 | 9.868160 | CCCTCCATTCCTAAATATAAGTCTTTT | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
509 | 536 | 9.237706 | TCCCTCCATTCCTAAATATAAGTCTTT | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
510 | 537 | 8.814448 | TCCCTCCATTCCTAAATATAAGTCTT | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
511 | 538 | 8.019652 | ACTCCCTCCATTCCTAAATATAAGTCT | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
512 | 539 | 8.208575 | ACTCCCTCCATTCCTAAATATAAGTC | 57.791 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
513 | 540 | 9.327731 | CTACTCCCTCCATTCCTAAATATAAGT | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
514 | 541 | 9.327731 | ACTACTCCCTCCATTCCTAAATATAAG | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
515 | 542 | 9.684702 | AACTACTCCCTCCATTCCTAAATATAA | 57.315 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
516 | 543 | 9.101325 | CAACTACTCCCTCCATTCCTAAATATA | 57.899 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
517 | 544 | 7.017651 | CCAACTACTCCCTCCATTCCTAAATAT | 59.982 | 40.741 | 0.00 | 0.00 | 0.00 | 1.28 |
518 | 545 | 6.329197 | CCAACTACTCCCTCCATTCCTAAATA | 59.671 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
519 | 546 | 5.132816 | CCAACTACTCCCTCCATTCCTAAAT | 59.867 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
520 | 547 | 4.473559 | CCAACTACTCCCTCCATTCCTAAA | 59.526 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
521 | 548 | 4.037927 | CCAACTACTCCCTCCATTCCTAA | 58.962 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
522 | 549 | 3.013648 | ACCAACTACTCCCTCCATTCCTA | 59.986 | 47.826 | 0.00 | 0.00 | 0.00 | 2.94 |
523 | 550 | 2.225908 | ACCAACTACTCCCTCCATTCCT | 60.226 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
524 | 551 | 2.092914 | CACCAACTACTCCCTCCATTCC | 60.093 | 54.545 | 0.00 | 0.00 | 0.00 | 3.01 |
525 | 552 | 2.838202 | TCACCAACTACTCCCTCCATTC | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
526 | 553 | 2.915869 | TCACCAACTACTCCCTCCATT | 58.084 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
527 | 554 | 2.642171 | TCACCAACTACTCCCTCCAT | 57.358 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
528 | 555 | 2.642171 | ATCACCAACTACTCCCTCCA | 57.358 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
529 | 556 | 4.409247 | ACAATATCACCAACTACTCCCTCC | 59.591 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
530 | 557 | 5.128827 | TGACAATATCACCAACTACTCCCTC | 59.871 | 44.000 | 0.00 | 0.00 | 29.99 | 4.30 |
531 | 558 | 5.030147 | TGACAATATCACCAACTACTCCCT | 58.970 | 41.667 | 0.00 | 0.00 | 29.99 | 4.20 |
532 | 559 | 5.353394 | TGACAATATCACCAACTACTCCC | 57.647 | 43.478 | 0.00 | 0.00 | 29.99 | 4.30 |
533 | 560 | 5.360591 | CCTGACAATATCACCAACTACTCC | 58.639 | 45.833 | 0.00 | 0.00 | 32.37 | 3.85 |
534 | 561 | 5.360591 | CCCTGACAATATCACCAACTACTC | 58.639 | 45.833 | 0.00 | 0.00 | 32.37 | 2.59 |
535 | 562 | 4.164221 | CCCCTGACAATATCACCAACTACT | 59.836 | 45.833 | 0.00 | 0.00 | 32.37 | 2.57 |
536 | 563 | 4.163458 | TCCCCTGACAATATCACCAACTAC | 59.837 | 45.833 | 0.00 | 0.00 | 32.37 | 2.73 |
550 | 577 | 2.838202 | GTGACCTCTTTATCCCCTGACA | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
581 | 608 | 2.436417 | ACACACATGGATTGCTGGTAC | 58.564 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
588 | 615 | 7.943413 | TTTGAACATAAACACACATGGATTG | 57.057 | 32.000 | 0.00 | 0.00 | 0.00 | 2.67 |
589 | 616 | 8.954950 | TTTTTGAACATAAACACACATGGATT | 57.045 | 26.923 | 0.00 | 0.00 | 0.00 | 3.01 |
615 | 642 | 8.330466 | TGAAACATAAATGACCGAGTAAATGT | 57.670 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
616 | 643 | 9.619316 | TTTGAAACATAAATGACCGAGTAAATG | 57.381 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
618 | 645 | 9.672086 | CTTTTGAAACATAAATGACCGAGTAAA | 57.328 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
619 | 646 | 8.842280 | ACTTTTGAAACATAAATGACCGAGTAA | 58.158 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
639 | 666 | 7.383843 | ACATATTACCCGCAAAAGAAACTTTTG | 59.616 | 33.333 | 23.80 | 23.80 | 41.09 | 2.44 |
648 | 1275 | 9.198837 | ACTTTTAAAACATATTACCCGCAAAAG | 57.801 | 29.630 | 0.00 | 0.00 | 36.08 | 2.27 |
652 | 1279 | 6.208994 | ACCACTTTTAAAACATATTACCCGCA | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 5.69 |
654 | 1281 | 7.595604 | ACACCACTTTTAAAACATATTACCCG | 58.404 | 34.615 | 0.00 | 0.00 | 0.00 | 5.28 |
655 | 1282 | 8.030692 | GGACACCACTTTTAAAACATATTACCC | 58.969 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
656 | 1283 | 8.799367 | AGGACACCACTTTTAAAACATATTACC | 58.201 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
667 | 1294 | 3.118702 | TGACACGAGGACACCACTTTTAA | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
675 | 1302 | 3.982576 | AAATTTTGACACGAGGACACC | 57.017 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
677 | 1304 | 8.410141 | AGAATTTTAAATTTTGACACGAGGACA | 58.590 | 29.630 | 4.32 | 0.00 | 0.00 | 4.02 |
680 | 1307 | 9.893305 | ACTAGAATTTTAAATTTTGACACGAGG | 57.107 | 29.630 | 4.32 | 0.00 | 0.00 | 4.63 |
684 | 1311 | 9.176181 | TGCGACTAGAATTTTAAATTTTGACAC | 57.824 | 29.630 | 4.32 | 0.00 | 0.00 | 3.67 |
706 | 1334 | 2.847959 | TGATACCGTCGTTTATGCGA | 57.152 | 45.000 | 0.00 | 0.00 | 38.68 | 5.10 |
715 | 1343 | 2.909244 | GCGAACAGATATGATACCGTCG | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
752 | 1944 | 8.404107 | TGCTAAATTTAATCCATAGTTAGCCC | 57.596 | 34.615 | 11.62 | 0.00 | 40.64 | 5.19 |
767 | 1959 | 8.927721 | GGAGCCGTTTTAAAATTGCTAAATTTA | 58.072 | 29.630 | 20.48 | 0.00 | 43.63 | 1.40 |
768 | 1960 | 7.094975 | GGGAGCCGTTTTAAAATTGCTAAATTT | 60.095 | 33.333 | 20.48 | 0.00 | 45.81 | 1.82 |
844 | 2043 | 3.075005 | ATAGTGGTCCGCGTGGCT | 61.075 | 61.111 | 11.05 | 3.93 | 34.14 | 4.75 |
865 | 2064 | 4.307032 | AGGTCTTGCATGGTCAACTATT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
896 | 2095 | 4.703897 | TGAACTCGAAAATCCTGTTCAGT | 58.296 | 39.130 | 9.34 | 0.00 | 41.02 | 3.41 |
938 | 2157 | 0.666274 | TGCGTGTATATAGCCTGCGC | 60.666 | 55.000 | 0.00 | 0.00 | 43.07 | 6.09 |
979 | 2227 | 4.781570 | TCGTCAACGAATGGCCAA | 57.218 | 50.000 | 10.96 | 0.00 | 46.30 | 4.52 |
992 | 2240 | 1.750572 | CGAGCTCTGCATGCTTCGTC | 61.751 | 60.000 | 20.33 | 8.24 | 41.30 | 4.20 |
1028 | 2276 | 2.191513 | ATTGCTAGCAGCGCCATGG | 61.192 | 57.895 | 18.45 | 7.63 | 46.26 | 3.66 |
1087 | 2335 | 4.514577 | CGCGAGGAAGCCATCGGT | 62.515 | 66.667 | 0.00 | 0.00 | 39.31 | 4.69 |
1809 | 3070 | 1.195442 | TGGTTAGGATGTCCACGGCA | 61.195 | 55.000 | 1.30 | 0.00 | 38.89 | 5.69 |
2052 | 3776 | 0.530744 | TCCGGTTCAAGATGTCCTCG | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2445 | 4172 | 2.646175 | GGCCTCGTAGCTGGTGACA | 61.646 | 63.158 | 0.00 | 0.00 | 39.59 | 3.58 |
2592 | 4319 | 0.539438 | GCCCCATGGTCAGTTGTTCA | 60.539 | 55.000 | 11.73 | 0.00 | 0.00 | 3.18 |
2593 | 4320 | 0.539438 | TGCCCCATGGTCAGTTGTTC | 60.539 | 55.000 | 11.73 | 0.00 | 0.00 | 3.18 |
2597 | 4324 | 0.612732 | CACATGCCCCATGGTCAGTT | 60.613 | 55.000 | 11.73 | 0.00 | 45.16 | 3.16 |
2608 | 4335 | 0.321564 | TCTATATGCGCCACATGCCC | 60.322 | 55.000 | 4.18 | 0.00 | 40.06 | 5.36 |
2611 | 4338 | 3.242091 | GCGTAATCTATATGCGCCACATG | 60.242 | 47.826 | 4.18 | 0.00 | 41.93 | 3.21 |
2621 | 4348 | 8.904834 | ACGAATCAGGATTAGCGTAATCTATAT | 58.095 | 33.333 | 13.67 | 0.00 | 43.15 | 0.86 |
2624 | 4351 | 6.570672 | ACGAATCAGGATTAGCGTAATCTA | 57.429 | 37.500 | 13.67 | 5.06 | 43.15 | 1.98 |
2625 | 4352 | 5.455056 | ACGAATCAGGATTAGCGTAATCT | 57.545 | 39.130 | 13.67 | 0.00 | 43.15 | 2.40 |
2627 | 4354 | 4.023450 | TCGACGAATCAGGATTAGCGTAAT | 60.023 | 41.667 | 8.23 | 0.00 | 33.37 | 1.89 |
2684 | 4411 | 3.057386 | TCGCCGCCGAATATACATAAGAA | 60.057 | 43.478 | 0.00 | 0.00 | 41.17 | 2.52 |
2700 | 4427 | 4.330740 | TTTTAGACTGTATTTTCGCCGC | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 6.53 |
2701 | 4428 | 5.188194 | CGATTTTAGACTGTATTTTCGCCG | 58.812 | 41.667 | 0.00 | 0.00 | 0.00 | 6.46 |
2702 | 4429 | 5.957796 | CACGATTTTAGACTGTATTTTCGCC | 59.042 | 40.000 | 0.00 | 0.00 | 0.00 | 5.54 |
2713 | 4440 | 3.374058 | CCGCCAAATCACGATTTTAGACT | 59.626 | 43.478 | 2.24 | 0.00 | 38.84 | 3.24 |
2716 | 4443 | 4.035091 | TCATCCGCCAAATCACGATTTTAG | 59.965 | 41.667 | 2.24 | 0.00 | 38.84 | 1.85 |
2743 | 4470 | 8.873186 | AAATCAGATGCATATATCATGTTCCA | 57.127 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
2750 | 4477 | 9.117183 | GGCTCATAAAATCAGATGCATATATCA | 57.883 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2751 | 4478 | 8.566260 | GGGCTCATAAAATCAGATGCATATATC | 58.434 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
2763 | 4490 | 4.665009 | AGGGAGTATGGGCTCATAAAATCA | 59.335 | 41.667 | 8.15 | 0.00 | 37.58 | 2.57 |
2773 | 4500 | 1.457831 | GACCGAGGGAGTATGGGCT | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
2776 | 4503 | 0.828343 | GAGGGACCGAGGGAGTATGG | 60.828 | 65.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2777 | 4504 | 0.828343 | GGAGGGACCGAGGGAGTATG | 60.828 | 65.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2779 | 4506 | 3.013631 | GGAGGGACCGAGGGAGTA | 58.986 | 66.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2788 | 4515 | 2.017049 | CATCAAAATGACGGAGGGACC | 58.983 | 52.381 | 0.00 | 0.00 | 34.61 | 4.46 |
2789 | 4516 | 1.401905 | GCATCAAAATGACGGAGGGAC | 59.598 | 52.381 | 0.00 | 0.00 | 34.61 | 4.46 |
2791 | 4518 | 0.740737 | GGCATCAAAATGACGGAGGG | 59.259 | 55.000 | 0.00 | 0.00 | 34.61 | 4.30 |
2792 | 4519 | 1.462616 | TGGCATCAAAATGACGGAGG | 58.537 | 50.000 | 0.00 | 0.00 | 44.62 | 4.30 |
2793 | 4520 | 2.424601 | ACATGGCATCAAAATGACGGAG | 59.575 | 45.455 | 0.00 | 0.00 | 44.62 | 4.63 |
2795 | 4522 | 2.945447 | ACATGGCATCAAAATGACGG | 57.055 | 45.000 | 0.00 | 0.00 | 44.62 | 4.79 |
2796 | 4523 | 4.621068 | ACTACATGGCATCAAAATGACG | 57.379 | 40.909 | 0.00 | 0.00 | 44.62 | 4.35 |
2797 | 4524 | 6.158598 | ACAAACTACATGGCATCAAAATGAC | 58.841 | 36.000 | 0.00 | 0.00 | 41.74 | 3.06 |
2806 | 5646 | 6.603940 | AATAACCAACAAACTACATGGCAT | 57.396 | 33.333 | 0.00 | 0.00 | 36.37 | 4.40 |
2809 | 5649 | 7.429633 | TGACAAATAACCAACAAACTACATGG | 58.570 | 34.615 | 0.00 | 0.00 | 38.91 | 3.66 |
2827 | 5673 | 6.433093 | GGGAGTATGTGTTAAGGTTGACAAAT | 59.567 | 38.462 | 0.00 | 0.00 | 30.72 | 2.32 |
2836 | 5682 | 2.764572 | ACGGAGGGAGTATGTGTTAAGG | 59.235 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2850 | 5696 | 2.092646 | TCAATTATGTTGGGACGGAGGG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2852 | 5698 | 3.871594 | GAGTCAATTATGTTGGGACGGAG | 59.128 | 47.826 | 0.00 | 0.00 | 33.84 | 4.63 |
2855 | 5701 | 4.695455 | AGTTGAGTCAATTATGTTGGGACG | 59.305 | 41.667 | 9.18 | 0.00 | 33.84 | 4.79 |
2857 | 5703 | 7.255801 | GGAAAAGTTGAGTCAATTATGTTGGGA | 60.256 | 37.037 | 9.18 | 0.00 | 0.00 | 4.37 |
2858 | 5704 | 6.868339 | GGAAAAGTTGAGTCAATTATGTTGGG | 59.132 | 38.462 | 9.18 | 0.00 | 0.00 | 4.12 |
2859 | 5705 | 7.661040 | AGGAAAAGTTGAGTCAATTATGTTGG | 58.339 | 34.615 | 9.18 | 0.00 | 0.00 | 3.77 |
2860 | 5706 | 7.809806 | GGAGGAAAAGTTGAGTCAATTATGTTG | 59.190 | 37.037 | 9.18 | 0.00 | 0.00 | 3.33 |
2861 | 5707 | 7.505585 | TGGAGGAAAAGTTGAGTCAATTATGTT | 59.494 | 33.333 | 9.18 | 0.07 | 0.00 | 2.71 |
2862 | 5708 | 7.004086 | TGGAGGAAAAGTTGAGTCAATTATGT | 58.996 | 34.615 | 9.18 | 0.00 | 0.00 | 2.29 |
2863 | 5709 | 7.452880 | TGGAGGAAAAGTTGAGTCAATTATG | 57.547 | 36.000 | 9.18 | 0.00 | 0.00 | 1.90 |
2864 | 5710 | 7.123247 | CCATGGAGGAAAAGTTGAGTCAATTAT | 59.877 | 37.037 | 5.56 | 0.00 | 41.22 | 1.28 |
2865 | 5711 | 6.434028 | CCATGGAGGAAAAGTTGAGTCAATTA | 59.566 | 38.462 | 5.56 | 0.00 | 41.22 | 1.40 |
2866 | 5712 | 5.244626 | CCATGGAGGAAAAGTTGAGTCAATT | 59.755 | 40.000 | 5.56 | 1.20 | 41.22 | 2.32 |
2867 | 5713 | 4.768968 | CCATGGAGGAAAAGTTGAGTCAAT | 59.231 | 41.667 | 5.56 | 0.00 | 41.22 | 2.57 |
2868 | 5714 | 4.144297 | CCATGGAGGAAAAGTTGAGTCAA | 58.856 | 43.478 | 5.56 | 0.08 | 41.22 | 3.18 |
2869 | 5715 | 3.754965 | CCATGGAGGAAAAGTTGAGTCA | 58.245 | 45.455 | 5.56 | 0.00 | 41.22 | 3.41 |
2870 | 5716 | 2.489722 | GCCATGGAGGAAAAGTTGAGTC | 59.510 | 50.000 | 18.40 | 0.00 | 41.22 | 3.36 |
2871 | 5717 | 2.108952 | AGCCATGGAGGAAAAGTTGAGT | 59.891 | 45.455 | 18.40 | 0.00 | 41.22 | 3.41 |
2872 | 5718 | 2.751806 | GAGCCATGGAGGAAAAGTTGAG | 59.248 | 50.000 | 18.40 | 0.00 | 41.22 | 3.02 |
2873 | 5719 | 2.555227 | GGAGCCATGGAGGAAAAGTTGA | 60.555 | 50.000 | 18.40 | 0.00 | 41.22 | 3.18 |
2874 | 5720 | 1.821136 | GGAGCCATGGAGGAAAAGTTG | 59.179 | 52.381 | 18.40 | 0.00 | 41.22 | 3.16 |
2875 | 5721 | 1.614317 | CGGAGCCATGGAGGAAAAGTT | 60.614 | 52.381 | 18.40 | 0.00 | 41.22 | 2.66 |
2876 | 5722 | 0.035056 | CGGAGCCATGGAGGAAAAGT | 60.035 | 55.000 | 18.40 | 0.00 | 41.22 | 2.66 |
2877 | 5723 | 0.035056 | ACGGAGCCATGGAGGAAAAG | 60.035 | 55.000 | 18.40 | 1.59 | 41.22 | 2.27 |
2878 | 5724 | 0.035439 | GACGGAGCCATGGAGGAAAA | 60.035 | 55.000 | 18.40 | 0.00 | 41.22 | 2.29 |
2879 | 5725 | 1.602237 | GACGGAGCCATGGAGGAAA | 59.398 | 57.895 | 18.40 | 0.00 | 41.22 | 3.13 |
2880 | 5726 | 2.721167 | CGACGGAGCCATGGAGGAA | 61.721 | 63.158 | 18.40 | 0.00 | 41.22 | 3.36 |
2881 | 5727 | 3.147595 | CGACGGAGCCATGGAGGA | 61.148 | 66.667 | 18.40 | 0.00 | 41.22 | 3.71 |
2882 | 5728 | 4.899239 | GCGACGGAGCCATGGAGG | 62.899 | 72.222 | 18.40 | 2.87 | 41.84 | 4.30 |
2883 | 5729 | 2.930385 | ATTGCGACGGAGCCATGGAG | 62.930 | 60.000 | 18.40 | 5.64 | 36.02 | 3.86 |
2884 | 5730 | 1.681486 | TATTGCGACGGAGCCATGGA | 61.681 | 55.000 | 18.40 | 0.00 | 36.02 | 3.41 |
2885 | 5731 | 1.227527 | TATTGCGACGGAGCCATGG | 60.228 | 57.895 | 7.63 | 7.63 | 36.02 | 3.66 |
2886 | 5732 | 0.809636 | TGTATTGCGACGGAGCCATG | 60.810 | 55.000 | 0.00 | 0.00 | 36.02 | 3.66 |
2887 | 5733 | 0.107897 | TTGTATTGCGACGGAGCCAT | 60.108 | 50.000 | 0.00 | 0.00 | 36.02 | 4.40 |
2888 | 5734 | 0.107897 | ATTGTATTGCGACGGAGCCA | 60.108 | 50.000 | 0.00 | 0.00 | 36.02 | 4.75 |
2889 | 5735 | 0.304705 | CATTGTATTGCGACGGAGCC | 59.695 | 55.000 | 0.00 | 0.00 | 36.02 | 4.70 |
2890 | 5736 | 1.006832 | ACATTGTATTGCGACGGAGC | 58.993 | 50.000 | 0.00 | 0.00 | 37.71 | 4.70 |
2891 | 5737 | 2.670905 | TCAACATTGTATTGCGACGGAG | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2892 | 5738 | 2.670905 | CTCAACATTGTATTGCGACGGA | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2893 | 5739 | 2.415168 | ACTCAACATTGTATTGCGACGG | 59.585 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
2894 | 5740 | 3.122780 | TGACTCAACATTGTATTGCGACG | 59.877 | 43.478 | 0.00 | 0.00 | 0.00 | 5.12 |
2895 | 5741 | 4.661993 | TGACTCAACATTGTATTGCGAC | 57.338 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
2896 | 5742 | 5.878332 | AATGACTCAACATTGTATTGCGA | 57.122 | 34.783 | 0.00 | 0.00 | 38.76 | 5.10 |
2897 | 5743 | 8.619146 | AATAAATGACTCAACATTGTATTGCG | 57.381 | 30.769 | 0.00 | 0.00 | 39.88 | 4.85 |
2901 | 5747 | 9.874205 | CCCAAAATAAATGACTCAACATTGTAT | 57.126 | 29.630 | 0.00 | 0.00 | 39.88 | 2.29 |
2902 | 5748 | 9.083422 | TCCCAAAATAAATGACTCAACATTGTA | 57.917 | 29.630 | 0.00 | 0.00 | 39.88 | 2.41 |
2903 | 5749 | 7.872483 | GTCCCAAAATAAATGACTCAACATTGT | 59.128 | 33.333 | 0.00 | 0.00 | 39.88 | 2.71 |
2904 | 5750 | 7.062138 | CGTCCCAAAATAAATGACTCAACATTG | 59.938 | 37.037 | 0.00 | 0.00 | 39.88 | 2.82 |
2905 | 5751 | 7.040062 | TCGTCCCAAAATAAATGACTCAACATT | 60.040 | 33.333 | 0.00 | 0.00 | 41.43 | 2.71 |
2906 | 5752 | 6.432783 | TCGTCCCAAAATAAATGACTCAACAT | 59.567 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2907 | 5753 | 5.765677 | TCGTCCCAAAATAAATGACTCAACA | 59.234 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2908 | 5754 | 6.249035 | TCGTCCCAAAATAAATGACTCAAC | 57.751 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2909 | 5755 | 6.072175 | CCTTCGTCCCAAAATAAATGACTCAA | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2910 | 5756 | 5.414454 | CCTTCGTCCCAAAATAAATGACTCA | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2911 | 5757 | 5.646360 | TCCTTCGTCCCAAAATAAATGACTC | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2912 | 5758 | 5.566469 | TCCTTCGTCCCAAAATAAATGACT | 58.434 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2913 | 5759 | 5.890424 | TCCTTCGTCCCAAAATAAATGAC | 57.110 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2914 | 5760 | 6.007703 | ACTTCCTTCGTCCCAAAATAAATGA | 58.992 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2915 | 5761 | 6.267496 | ACTTCCTTCGTCCCAAAATAAATG | 57.733 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2916 | 5762 | 9.862149 | ATATACTTCCTTCGTCCCAAAATAAAT | 57.138 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2917 | 5763 | 9.333724 | GATATACTTCCTTCGTCCCAAAATAAA | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2918 | 5764 | 8.487848 | TGATATACTTCCTTCGTCCCAAAATAA | 58.512 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2919 | 5765 | 8.025270 | TGATATACTTCCTTCGTCCCAAAATA | 57.975 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2920 | 5766 | 6.895782 | TGATATACTTCCTTCGTCCCAAAAT | 58.104 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2921 | 5767 | 6.302535 | TGATATACTTCCTTCGTCCCAAAA | 57.697 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
2922 | 5768 | 5.943349 | TGATATACTTCCTTCGTCCCAAA | 57.057 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
2923 | 5769 | 5.943349 | TTGATATACTTCCTTCGTCCCAA | 57.057 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
2924 | 5770 | 6.494666 | AATTGATATACTTCCTTCGTCCCA | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
2925 | 5771 | 8.897872 | TTAAATTGATATACTTCCTTCGTCCC | 57.102 | 34.615 | 0.00 | 0.00 | 0.00 | 4.46 |
2941 | 5787 | 9.651913 | ATTAGCAAACACGGATTTTAAATTGAT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
2942 | 5788 | 8.920665 | CATTAGCAAACACGGATTTTAAATTGA | 58.079 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2943 | 5789 | 8.920665 | TCATTAGCAAACACGGATTTTAAATTG | 58.079 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2944 | 5790 | 9.651913 | ATCATTAGCAAACACGGATTTTAAATT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
2945 | 5791 | 9.301153 | GATCATTAGCAAACACGGATTTTAAAT | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2997 | 5843 | 2.097142 | GTGCTCTGCAATGAATGGACTC | 59.903 | 50.000 | 0.00 | 0.00 | 41.47 | 3.36 |
3055 | 5901 | 1.045911 | GGGCTGAGGAGTCGAGGAAT | 61.046 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3056 | 5902 | 1.682684 | GGGCTGAGGAGTCGAGGAA | 60.683 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
3083 | 5929 | 5.351465 | CAGGATTTTTACGAGAAGCTAGCAA | 59.649 | 40.000 | 18.83 | 0.00 | 0.00 | 3.91 |
3131 | 5977 | 4.892433 | AGCGCTAATGATTGAGAAGCTAT | 58.108 | 39.130 | 8.99 | 0.00 | 0.00 | 2.97 |
3204 | 6050 | 1.481772 | GCTGCAAGACCATCTCTCTCT | 59.518 | 52.381 | 0.00 | 0.00 | 34.07 | 3.10 |
3205 | 6051 | 1.473080 | GGCTGCAAGACCATCTCTCTC | 60.473 | 57.143 | 0.50 | 0.00 | 33.95 | 3.20 |
3403 | 6249 | 1.210967 | AGTCGTGGAGTTGGGAAAACA | 59.789 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3581 | 6429 | 1.602311 | CTCCAGCTTGTTCACAGCTT | 58.398 | 50.000 | 0.00 | 0.00 | 36.69 | 3.74 |
3583 | 6431 | 0.250467 | TCCTCCAGCTTGTTCACAGC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3585 | 6433 | 0.249868 | CGTCCTCCAGCTTGTTCACA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3587 | 6435 | 0.756294 | TTCGTCCTCCAGCTTGTTCA | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3596 | 6444 | 2.592993 | CCTTGGCCTTCGTCCTCCA | 61.593 | 63.158 | 3.32 | 0.00 | 0.00 | 3.86 |
3608 | 6456 | 4.299796 | TCACCCTTGGGCCTTGGC | 62.300 | 66.667 | 4.53 | 2.49 | 0.00 | 4.52 |
3609 | 6457 | 2.283173 | GTCACCCTTGGGCCTTGG | 60.283 | 66.667 | 4.53 | 6.75 | 0.00 | 3.61 |
3610 | 6458 | 2.672996 | CGTCACCCTTGGGCCTTG | 60.673 | 66.667 | 4.53 | 0.00 | 0.00 | 3.61 |
3611 | 6459 | 2.002018 | TTTCGTCACCCTTGGGCCTT | 62.002 | 55.000 | 4.53 | 0.00 | 0.00 | 4.35 |
3612 | 6460 | 2.002018 | TTTTCGTCACCCTTGGGCCT | 62.002 | 55.000 | 4.53 | 0.00 | 0.00 | 5.19 |
3613 | 6461 | 1.110518 | TTTTTCGTCACCCTTGGGCC | 61.111 | 55.000 | 5.46 | 0.00 | 0.00 | 5.80 |
3614 | 6462 | 0.966179 | ATTTTTCGTCACCCTTGGGC | 59.034 | 50.000 | 5.46 | 0.00 | 0.00 | 5.36 |
3615 | 6463 | 2.235016 | TCATTTTTCGTCACCCTTGGG | 58.765 | 47.619 | 3.77 | 3.77 | 0.00 | 4.12 |
3618 | 6466 | 6.405278 | AAAAGATCATTTTTCGTCACCCTT | 57.595 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
3651 | 6499 | 5.061179 | GCCCGCCTAATCTTCAGTTATTAA | 58.939 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
3652 | 6500 | 4.504340 | GGCCCGCCTAATCTTCAGTTATTA | 60.504 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
3653 | 6501 | 3.477530 | GCCCGCCTAATCTTCAGTTATT | 58.522 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
3654 | 6502 | 2.224548 | GGCCCGCCTAATCTTCAGTTAT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3685 | 6535 | 1.583556 | TCAGGCAAGGCAGGATTCTA | 58.416 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3686 | 6536 | 0.924823 | ATCAGGCAAGGCAGGATTCT | 59.075 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3687 | 6537 | 2.105477 | TCTATCAGGCAAGGCAGGATTC | 59.895 | 50.000 | 6.22 | 0.00 | 0.00 | 2.52 |
3688 | 6538 | 2.130193 | TCTATCAGGCAAGGCAGGATT | 58.870 | 47.619 | 6.22 | 0.00 | 0.00 | 3.01 |
3689 | 6539 | 1.419387 | GTCTATCAGGCAAGGCAGGAT | 59.581 | 52.381 | 0.00 | 1.64 | 0.00 | 3.24 |
3690 | 6540 | 0.833287 | GTCTATCAGGCAAGGCAGGA | 59.167 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3696 | 6546 | 7.066163 | TGACAACAAATATGTCTATCAGGCAAG | 59.934 | 37.037 | 8.01 | 0.00 | 45.81 | 4.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.