Multiple sequence alignment - TraesCS2D01G126200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G126200 chr2D 100.000 3728 0 0 1 3728 73418490 73414763 0.000000e+00 6885
1 TraesCS2D01G126200 chr2D 83.388 1517 216 23 1078 2585 73454324 73452835 0.000000e+00 1373
2 TraesCS2D01G126200 chr2D 83.556 225 32 5 3321 3542 475808721 475808499 4.880000e-49 206
3 TraesCS2D01G126200 chr2A 90.204 2113 144 28 719 2776 72814506 72812402 0.000000e+00 2697
4 TraesCS2D01G126200 chr2A 82.675 1518 225 25 1078 2585 72932865 72931376 0.000000e+00 1312
5 TraesCS2D01G126200 chr2A 96.132 517 17 3 3026 3542 30315564 30315051 0.000000e+00 841
6 TraesCS2D01G126200 chr2A 95.192 520 22 2 3026 3545 338548365 338547849 0.000000e+00 819
7 TraesCS2D01G126200 chr2A 96.552 87 3 0 2939 3025 72811209 72811123 1.080000e-30 145
8 TraesCS2D01G126200 chr2B 91.640 1878 132 12 974 2850 111081978 111080125 0.000000e+00 2575
9 TraesCS2D01G126200 chr2B 83.487 1520 217 22 1078 2589 111359647 111361140 0.000000e+00 1386
10 TraesCS2D01G126200 chr2B 90.909 253 17 4 728 974 111082259 111082007 5.970000e-88 335
11 TraesCS2D01G126200 chr2B 84.300 293 18 13 111 376 111083900 111083609 1.030000e-65 261
12 TraesCS2D01G126200 chr2B 90.698 172 16 0 370 541 44749592 44749763 2.900000e-56 230
13 TraesCS2D01G126200 chr2B 80.000 190 20 7 3541 3726 111080051 111079876 1.410000e-24 124
14 TraesCS2D01G126200 chr2B 89.216 102 6 1 538 639 111083608 111083512 5.060000e-24 122
15 TraesCS2D01G126200 chr7A 82.286 1496 229 23 1082 2574 81548322 81549784 0.000000e+00 1262
16 TraesCS2D01G126200 chr7A 80.703 1508 235 28 1076 2580 518658738 518657284 0.000000e+00 1122
17 TraesCS2D01G126200 chr7A 91.908 173 14 0 370 542 643187059 643186887 3.720000e-60 243
18 TraesCS2D01G126200 chr7A 91.813 171 14 0 375 545 717441321 717441151 4.810000e-59 239
19 TraesCS2D01G126200 chr7A 91.566 166 14 0 374 539 16718367 16718202 2.900000e-56 230
20 TraesCS2D01G126200 chr7A 89.385 179 17 2 365 542 14185923 14186100 1.350000e-54 224
21 TraesCS2D01G126200 chr7D 81.283 1496 244 24 1082 2574 78115570 78117032 0.000000e+00 1179
22 TraesCS2D01G126200 chr7D 81.060 1510 245 28 1076 2581 477641723 477643195 0.000000e+00 1166
23 TraesCS2D01G126200 chr7D 96.346 520 16 2 3026 3545 379092888 379092372 0.000000e+00 852
24 TraesCS2D01G126200 chr7B 81.079 1501 237 33 1081 2574 501965747 501967207 0.000000e+00 1155
25 TraesCS2D01G126200 chr7B 91.923 520 17 6 3026 3545 496786631 496786137 0.000000e+00 704
26 TraesCS2D01G126200 chr7B 81.274 769 130 12 1807 2574 25340416 25341171 8.850000e-171 610
27 TraesCS2D01G126200 chr7B 82.247 721 108 11 1082 1801 25339246 25339947 4.120000e-169 604
28 TraesCS2D01G126200 chr3A 81.579 1406 218 21 1173 2574 33137241 33138609 0.000000e+00 1123
29 TraesCS2D01G126200 chr3B 81.013 790 132 12 1788 2574 41849022 41849796 2.460000e-171 612
30 TraesCS2D01G126200 chr5B 83.834 433 51 12 3112 3542 507657663 507658078 9.700000e-106 394
31 TraesCS2D01G126200 chr5B 91.176 170 14 1 371 540 23416623 23416791 2.900000e-56 230
32 TraesCS2D01G126200 chr6D 91.279 172 13 2 369 539 94051909 94052079 2.240000e-57 233
33 TraesCS2D01G126200 chr4D 90.643 171 16 0 375 545 243613272 243613442 1.040000e-55 228
34 TraesCS2D01G126200 chr3D 91.071 168 15 0 372 539 550509429 550509596 1.040000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G126200 chr2D 73414763 73418490 3727 True 6885.0 6885 100.0000 1 3728 1 chr2D.!!$R1 3727
1 TraesCS2D01G126200 chr2D 73452835 73454324 1489 True 1373.0 1373 83.3880 1078 2585 1 chr2D.!!$R2 1507
2 TraesCS2D01G126200 chr2A 72811123 72814506 3383 True 1421.0 2697 93.3780 719 3025 2 chr2A.!!$R4 2306
3 TraesCS2D01G126200 chr2A 72931376 72932865 1489 True 1312.0 1312 82.6750 1078 2585 1 chr2A.!!$R2 1507
4 TraesCS2D01G126200 chr2A 30315051 30315564 513 True 841.0 841 96.1320 3026 3542 1 chr2A.!!$R1 516
5 TraesCS2D01G126200 chr2A 338547849 338548365 516 True 819.0 819 95.1920 3026 3545 1 chr2A.!!$R3 519
6 TraesCS2D01G126200 chr2B 111359647 111361140 1493 False 1386.0 1386 83.4870 1078 2589 1 chr2B.!!$F2 1511
7 TraesCS2D01G126200 chr2B 111079876 111083900 4024 True 683.4 2575 87.2130 111 3726 5 chr2B.!!$R1 3615
8 TraesCS2D01G126200 chr7A 81548322 81549784 1462 False 1262.0 1262 82.2860 1082 2574 1 chr7A.!!$F2 1492
9 TraesCS2D01G126200 chr7A 518657284 518658738 1454 True 1122.0 1122 80.7030 1076 2580 1 chr7A.!!$R2 1504
10 TraesCS2D01G126200 chr7D 78115570 78117032 1462 False 1179.0 1179 81.2830 1082 2574 1 chr7D.!!$F1 1492
11 TraesCS2D01G126200 chr7D 477641723 477643195 1472 False 1166.0 1166 81.0600 1076 2581 1 chr7D.!!$F2 1505
12 TraesCS2D01G126200 chr7D 379092372 379092888 516 True 852.0 852 96.3460 3026 3545 1 chr7D.!!$R1 519
13 TraesCS2D01G126200 chr7B 501965747 501967207 1460 False 1155.0 1155 81.0790 1081 2574 1 chr7B.!!$F1 1493
14 TraesCS2D01G126200 chr7B 25339246 25341171 1925 False 607.0 610 81.7605 1082 2574 2 chr7B.!!$F2 1492
15 TraesCS2D01G126200 chr3A 33137241 33138609 1368 False 1123.0 1123 81.5790 1173 2574 1 chr3A.!!$F1 1401
16 TraesCS2D01G126200 chr3B 41849022 41849796 774 False 612.0 612 81.0130 1788 2574 1 chr3B.!!$F1 786


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 1951 0.108281 GGAACCACGAGAGGGCTAAC 60.108 60.0 0.0 0.0 0.00 2.34 F
2593 4320 0.040336 GCCGCTTGATGCTGATGATG 60.040 55.0 0.0 0.0 40.11 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2608 4335 0.321564 TCTATATGCGCCACATGCCC 60.322 55.0 4.18 0.0 40.06 5.36 R
3585 6433 0.249868 CGTCCTCCAGCTTGTTCACA 60.250 55.0 0.00 0.0 0.00 3.58 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.664211 AAGAAAGTACAGAGGAAGTTAAAGTG 57.336 34.615 0.00 0.00 0.00 3.16
26 27 8.019656 AGAAAGTACAGAGGAAGTTAAAGTGA 57.980 34.615 0.00 0.00 0.00 3.41
27 28 8.145122 AGAAAGTACAGAGGAAGTTAAAGTGAG 58.855 37.037 0.00 0.00 0.00 3.51
28 29 7.598759 AAGTACAGAGGAAGTTAAAGTGAGA 57.401 36.000 0.00 0.00 0.00 3.27
29 30 7.784470 AGTACAGAGGAAGTTAAAGTGAGAT 57.216 36.000 0.00 0.00 0.00 2.75
30 31 8.880991 AGTACAGAGGAAGTTAAAGTGAGATA 57.119 34.615 0.00 0.00 0.00 1.98
31 32 9.310449 AGTACAGAGGAAGTTAAAGTGAGATAA 57.690 33.333 0.00 0.00 0.00 1.75
32 33 9.575783 GTACAGAGGAAGTTAAAGTGAGATAAG 57.424 37.037 0.00 0.00 0.00 1.73
33 34 8.196378 ACAGAGGAAGTTAAAGTGAGATAAGT 57.804 34.615 0.00 0.00 0.00 2.24
34 35 9.310449 ACAGAGGAAGTTAAAGTGAGATAAGTA 57.690 33.333 0.00 0.00 0.00 2.24
46 47 9.587772 AAAGTGAGATAAGTATATGTGTGTGTC 57.412 33.333 0.00 0.00 0.00 3.67
47 48 8.293699 AGTGAGATAAGTATATGTGTGTGTCA 57.706 34.615 0.00 0.00 0.00 3.58
48 49 8.918116 AGTGAGATAAGTATATGTGTGTGTCAT 58.082 33.333 0.00 0.00 0.00 3.06
49 50 9.186323 GTGAGATAAGTATATGTGTGTGTCATC 57.814 37.037 0.00 0.00 0.00 2.92
50 51 8.912988 TGAGATAAGTATATGTGTGTGTCATCA 58.087 33.333 0.00 0.00 0.00 3.07
51 52 9.920133 GAGATAAGTATATGTGTGTGTCATCAT 57.080 33.333 0.00 0.00 0.00 2.45
52 53 9.920133 AGATAAGTATATGTGTGTGTCATCATC 57.080 33.333 0.00 0.00 0.00 2.92
53 54 9.920133 GATAAGTATATGTGTGTGTCATCATCT 57.080 33.333 0.00 0.00 0.00 2.90
56 57 7.374272 AGTATATGTGTGTGTCATCATCTAGC 58.626 38.462 0.00 0.00 0.00 3.42
57 58 4.750021 ATGTGTGTGTCATCATCTAGCT 57.250 40.909 0.00 0.00 0.00 3.32
58 59 3.853475 TGTGTGTGTCATCATCTAGCTG 58.147 45.455 0.00 0.00 0.00 4.24
59 60 3.193263 GTGTGTGTCATCATCTAGCTGG 58.807 50.000 0.00 0.00 0.00 4.85
60 61 2.208431 GTGTGTCATCATCTAGCTGGC 58.792 52.381 0.00 0.00 0.00 4.85
61 62 2.113807 TGTGTCATCATCTAGCTGGCT 58.886 47.619 0.00 0.00 0.00 4.75
62 63 3.068732 GTGTGTCATCATCTAGCTGGCTA 59.931 47.826 0.00 2.23 0.00 3.93
63 64 3.320256 TGTGTCATCATCTAGCTGGCTAG 59.680 47.826 19.99 19.99 45.38 3.42
71 72 2.601905 TCTAGCTGGCTAGATGCATGA 58.398 47.619 23.38 5.12 46.94 3.07
72 73 2.298446 TCTAGCTGGCTAGATGCATGAC 59.702 50.000 23.38 0.00 46.94 3.06
73 74 0.835276 AGCTGGCTAGATGCATGACA 59.165 50.000 2.46 0.00 45.15 3.58
74 75 1.420514 AGCTGGCTAGATGCATGACAT 59.579 47.619 2.46 0.00 45.15 3.06
75 76 2.158652 AGCTGGCTAGATGCATGACATT 60.159 45.455 2.46 0.00 45.15 2.71
76 77 2.031069 GCTGGCTAGATGCATGACATTG 60.031 50.000 2.46 0.00 45.15 2.82
77 78 1.951602 TGGCTAGATGCATGACATTGC 59.048 47.619 2.46 0.00 45.15 3.56
90 91 7.775397 GCATGACATTGCAATTAAGGTTAAT 57.225 32.000 9.83 0.77 42.31 1.40
91 92 7.623770 GCATGACATTGCAATTAAGGTTAATG 58.376 34.615 9.83 12.67 42.31 1.90
92 93 7.278424 GCATGACATTGCAATTAAGGTTAATGT 59.722 33.333 9.83 1.53 42.31 2.71
93 94 8.597227 CATGACATTGCAATTAAGGTTAATGTG 58.403 33.333 9.83 0.00 38.45 3.21
94 95 7.095910 TGACATTGCAATTAAGGTTAATGTGG 58.904 34.615 9.83 0.00 38.45 4.17
95 96 6.405538 ACATTGCAATTAAGGTTAATGTGGG 58.594 36.000 9.83 0.00 37.36 4.61
96 97 4.464069 TGCAATTAAGGTTAATGTGGGC 57.536 40.909 0.00 0.52 33.85 5.36
97 98 3.196685 TGCAATTAAGGTTAATGTGGGCC 59.803 43.478 0.00 0.00 33.85 5.80
98 99 3.736740 GCAATTAAGGTTAATGTGGGCCG 60.737 47.826 0.00 0.00 33.85 6.13
99 100 2.131776 TTAAGGTTAATGTGGGCCGG 57.868 50.000 0.00 0.00 0.00 6.13
100 101 0.256464 TAAGGTTAATGTGGGCCGGG 59.744 55.000 2.18 0.00 0.00 5.73
101 102 2.441348 GGTTAATGTGGGCCGGGG 60.441 66.667 2.18 0.00 0.00 5.73
102 103 2.678470 GTTAATGTGGGCCGGGGA 59.322 61.111 2.18 0.00 0.00 4.81
103 104 1.000646 GTTAATGTGGGCCGGGGAA 60.001 57.895 2.18 0.00 0.00 3.97
104 105 1.035385 GTTAATGTGGGCCGGGGAAG 61.035 60.000 2.18 0.00 0.00 3.46
105 106 2.218115 TTAATGTGGGCCGGGGAAGG 62.218 60.000 2.18 0.00 0.00 3.46
122 123 4.265893 GGAAGGGAATTGAGAGGAGAAAC 58.734 47.826 0.00 0.00 0.00 2.78
177 178 6.361433 TCAGAACATCAAGTCCAAAAAGGTA 58.639 36.000 0.00 0.00 39.02 3.08
191 192 7.494298 GTCCAAAAAGGTAAAAGAAGCATTTGA 59.506 33.333 0.00 0.00 39.02 2.69
199 200 6.524586 GGTAAAAGAAGCATTTGAGATTGTCG 59.475 38.462 0.00 0.00 0.00 4.35
213 214 7.290110 TGAGATTGTCGACCTACATATCAAT 57.710 36.000 14.12 2.32 0.00 2.57
221 222 7.501225 TGTCGACCTACATATCAATAGTGAAGA 59.499 37.037 14.12 0.00 37.30 2.87
232 233 7.706281 ATCAATAGTGAAGAATGTAAGCGAG 57.294 36.000 0.00 0.00 37.30 5.03
251 252 5.594725 AGCGAGTCACAATTAGAGGAGAATA 59.405 40.000 0.00 0.00 0.00 1.75
258 285 9.178758 GTCACAATTAGAGGAGAATAAAACCAT 57.821 33.333 0.00 0.00 0.00 3.55
301 328 2.257207 TGTTAGCTAGGTGCAGTCCTT 58.743 47.619 4.27 0.00 45.94 3.36
307 334 2.884639 GCTAGGTGCAGTCCTTTTTCAA 59.115 45.455 0.51 0.00 42.31 2.69
313 340 4.293415 GTGCAGTCCTTTTTCAATCACAG 58.707 43.478 0.00 0.00 0.00 3.66
319 346 7.651808 CAGTCCTTTTTCAATCACAGTTATGT 58.348 34.615 0.00 0.00 41.57 2.29
383 410 6.351327 GTGCAACTGTGATATACTTTCTCC 57.649 41.667 0.00 0.00 0.00 3.71
384 411 5.005779 GTGCAACTGTGATATACTTTCTCCG 59.994 44.000 0.00 0.00 0.00 4.63
385 412 5.109903 GCAACTGTGATATACTTTCTCCGT 58.890 41.667 0.00 0.00 0.00 4.69
386 413 5.581085 GCAACTGTGATATACTTTCTCCGTT 59.419 40.000 0.00 0.00 0.00 4.44
387 414 6.092259 GCAACTGTGATATACTTTCTCCGTTT 59.908 38.462 0.00 0.00 0.00 3.60
388 415 7.674240 GCAACTGTGATATACTTTCTCCGTTTC 60.674 40.741 0.00 0.00 0.00 2.78
389 416 7.171630 ACTGTGATATACTTTCTCCGTTTCT 57.828 36.000 0.00 0.00 0.00 2.52
390 417 8.289939 ACTGTGATATACTTTCTCCGTTTCTA 57.710 34.615 0.00 0.00 0.00 2.10
391 418 8.746530 ACTGTGATATACTTTCTCCGTTTCTAA 58.253 33.333 0.00 0.00 0.00 2.10
392 419 9.582431 CTGTGATATACTTTCTCCGTTTCTAAA 57.418 33.333 0.00 0.00 0.00 1.85
478 505 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
479 506 8.485976 AGAGTGTAGATTCACTTATTTTGCTC 57.514 34.615 0.98 0.00 46.81 4.26
480 507 7.550906 AGAGTGTAGATTCACTTATTTTGCTCC 59.449 37.037 0.98 0.00 46.81 4.70
481 508 6.313905 AGTGTAGATTCACTTATTTTGCTCCG 59.686 38.462 0.00 0.00 44.92 4.63
482 509 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
483 510 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
484 511 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
485 512 7.484035 AGATTCACTTATTTTGCTCCGTATC 57.516 36.000 0.00 0.00 0.00 2.24
486 513 7.275920 AGATTCACTTATTTTGCTCCGTATCT 58.724 34.615 0.00 0.00 0.00 1.98
487 514 8.421784 AGATTCACTTATTTTGCTCCGTATCTA 58.578 33.333 0.00 0.00 0.00 1.98
488 515 8.958119 ATTCACTTATTTTGCTCCGTATCTAA 57.042 30.769 0.00 0.00 0.00 2.10
489 516 8.958119 TTCACTTATTTTGCTCCGTATCTAAT 57.042 30.769 0.00 0.00 0.00 1.73
490 517 8.958119 TCACTTATTTTGCTCCGTATCTAATT 57.042 30.769 0.00 0.00 0.00 1.40
498 525 9.781834 TTTTGCTCCGTATCTAATTATTTGTTG 57.218 29.630 0.00 0.00 0.00 3.33
499 526 7.490962 TGCTCCGTATCTAATTATTTGTTGG 57.509 36.000 0.00 0.00 0.00 3.77
500 527 7.276658 TGCTCCGTATCTAATTATTTGTTGGA 58.723 34.615 0.00 0.00 0.00 3.53
501 528 7.771361 TGCTCCGTATCTAATTATTTGTTGGAA 59.229 33.333 0.00 0.00 0.00 3.53
502 529 8.784043 GCTCCGTATCTAATTATTTGTTGGAAT 58.216 33.333 0.00 0.00 0.00 3.01
534 561 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
535 562 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
536 563 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
550 577 4.631234 TGGAGGGAGTAGTTGGTGATATT 58.369 43.478 0.00 0.00 0.00 1.28
581 608 0.249322 AAGAGGTCACACCGTTCACG 60.249 55.000 0.00 0.00 44.90 4.35
588 615 1.300388 ACACCGTTCACGTACCAGC 60.300 57.895 0.00 0.00 37.74 4.85
589 616 1.300311 CACCGTTCACGTACCAGCA 60.300 57.895 0.00 0.00 37.74 4.41
592 619 0.719465 CCGTTCACGTACCAGCAATC 59.281 55.000 0.00 0.00 37.74 2.67
598 625 1.398041 CACGTACCAGCAATCCATGTG 59.602 52.381 0.00 0.00 0.00 3.21
639 666 9.620660 AAACATTTACTCGGTCATTTATGTTTC 57.379 29.630 0.00 0.00 39.43 2.78
648 1275 8.568732 TCGGTCATTTATGTTTCAAAAGTTTC 57.431 30.769 0.00 0.00 0.00 2.78
655 1282 9.701355 ATTTATGTTTCAAAAGTTTCTTTTGCG 57.299 25.926 22.30 7.62 38.79 4.85
656 1283 5.523013 TGTTTCAAAAGTTTCTTTTGCGG 57.477 34.783 22.30 7.08 38.79 5.69
667 1294 6.988522 AGTTTCTTTTGCGGGTAATATGTTT 58.011 32.000 0.00 0.00 0.00 2.83
675 1302 8.522178 TTTGCGGGTAATATGTTTTAAAAGTG 57.478 30.769 0.00 0.00 0.00 3.16
677 1304 6.208994 TGCGGGTAATATGTTTTAAAAGTGGT 59.791 34.615 0.00 0.00 0.00 4.16
680 1307 7.751793 CGGGTAATATGTTTTAAAAGTGGTGTC 59.248 37.037 0.00 0.00 0.00 3.67
684 1311 4.886247 TGTTTTAAAAGTGGTGTCCTCG 57.114 40.909 0.00 0.00 0.00 4.63
706 1334 9.893305 CCTCGTGTCAAAATTTAAAATTCTAGT 57.107 29.630 0.00 0.00 0.00 2.57
759 1951 0.108281 GGAACCACGAGAGGGCTAAC 60.108 60.000 0.00 0.00 0.00 2.34
761 1953 2.097825 GAACCACGAGAGGGCTAACTA 58.902 52.381 0.00 0.00 0.00 2.24
763 1955 2.032620 ACCACGAGAGGGCTAACTATG 58.967 52.381 0.00 0.00 0.00 2.23
764 1956 1.341531 CCACGAGAGGGCTAACTATGG 59.658 57.143 0.00 0.00 0.00 2.74
765 1957 2.307768 CACGAGAGGGCTAACTATGGA 58.692 52.381 0.00 0.00 0.00 3.41
766 1958 2.894126 CACGAGAGGGCTAACTATGGAT 59.106 50.000 0.00 0.00 0.00 3.41
767 1959 3.322254 CACGAGAGGGCTAACTATGGATT 59.678 47.826 0.00 0.00 0.00 3.01
768 1960 4.523173 CACGAGAGGGCTAACTATGGATTA 59.477 45.833 0.00 0.00 0.00 1.75
815 2013 2.028284 CGCTTTAACTACGCGTTGCATA 59.972 45.455 20.78 9.95 41.78 3.14
828 2027 1.017177 TTGCATACACTTCGCCGGTC 61.017 55.000 1.90 0.00 0.00 4.79
865 2064 1.216977 CACGCGGACCACTATCCAA 59.783 57.895 12.47 0.00 38.87 3.53
938 2157 2.307137 GACAGAGTACTCGCCGTCGG 62.307 65.000 17.07 6.99 36.13 4.79
979 2227 2.879002 CAGTGAGTGCTACCGATCAT 57.121 50.000 0.00 0.00 0.00 2.45
992 2240 1.268692 CCGATCATTGGCCATTCGTTG 60.269 52.381 6.09 0.00 0.00 4.10
1028 2276 4.851179 GATGGCCCCGTCCCGAAC 62.851 72.222 0.00 0.00 0.00 3.95
1171 2419 3.389211 CGTCGTTCGCGTCGGTTT 61.389 61.111 20.86 0.00 45.34 3.27
1506 2754 0.962489 CTATCGGGAAGGCGAGTGAT 59.038 55.000 0.00 0.00 0.00 3.06
1809 3070 4.680537 AGGTCCGTCGAGCAGGGT 62.681 66.667 0.00 0.00 39.06 4.34
2289 4013 5.251601 TGCTGTATAACGTGCAGTACATA 57.748 39.130 0.00 0.00 41.97 2.29
2592 4319 1.504647 CGCCGCTTGATGCTGATGAT 61.505 55.000 0.00 0.00 40.11 2.45
2593 4320 0.040336 GCCGCTTGATGCTGATGATG 60.040 55.000 0.00 0.00 40.11 3.07
2597 4324 2.353579 CGCTTGATGCTGATGATGAACA 59.646 45.455 0.00 0.00 40.11 3.18
2603 4330 4.393990 TGATGCTGATGATGAACAACTGAC 59.606 41.667 0.00 0.00 0.00 3.51
2608 4335 4.011698 TGATGATGAACAACTGACCATGG 58.988 43.478 11.19 11.19 0.00 3.66
2611 4338 0.539438 TGAACAACTGACCATGGGGC 60.539 55.000 18.09 8.37 37.90 5.80
2627 4354 3.231734 GGCATGTGGCGCATATAGA 57.768 52.632 14.03 0.00 46.16 1.98
2641 4368 5.174035 GCGCATATAGATTACGCTAATCCTG 59.826 44.000 0.30 7.71 44.35 3.86
2642 4369 6.495706 CGCATATAGATTACGCTAATCCTGA 58.504 40.000 11.62 2.69 44.35 3.86
2684 4411 6.252995 ACATATTTGGTTGTGTGGGTATCTT 58.747 36.000 0.00 0.00 0.00 2.40
2689 4416 5.570205 TGGTTGTGTGGGTATCTTTCTTA 57.430 39.130 0.00 0.00 0.00 2.10
2700 4427 9.367444 GTGGGTATCTTTCTTATGTATATTCGG 57.633 37.037 0.00 0.00 0.00 4.30
2701 4428 8.038944 TGGGTATCTTTCTTATGTATATTCGGC 58.961 37.037 0.00 0.00 0.00 5.54
2702 4429 7.222224 GGGTATCTTTCTTATGTATATTCGGCG 59.778 40.741 0.00 0.00 0.00 6.46
2713 4440 1.937278 TATTCGGCGGCGAAAATACA 58.063 45.000 43.28 25.42 0.00 2.29
2716 4443 1.079875 TCGGCGGCGAAAATACAGTC 61.080 55.000 32.93 0.00 0.00 3.51
2743 4470 1.401552 CGTGATTTGGCGGATGACAAT 59.598 47.619 0.00 0.00 44.30 2.71
2745 4472 1.750206 TGATTTGGCGGATGACAATGG 59.250 47.619 0.00 0.00 44.30 3.16
2750 4477 4.379129 TTTGGCGGATGACAATGGAACAT 61.379 43.478 0.00 0.00 44.30 2.71
2751 4478 6.408083 TTTGGCGGATGACAATGGAACATG 62.408 45.833 0.00 0.00 44.30 3.21
2776 4503 9.117183 TGATATATGCATCTGATTTTATGAGCC 57.883 33.333 0.19 0.00 0.00 4.70
2777 4504 6.770746 ATATGCATCTGATTTTATGAGCCC 57.229 37.500 0.19 0.00 0.00 5.19
2779 4506 4.476297 TGCATCTGATTTTATGAGCCCAT 58.524 39.130 0.00 0.00 36.81 4.00
2780 4507 5.633117 TGCATCTGATTTTATGAGCCCATA 58.367 37.500 0.00 0.00 34.31 2.74
2781 4508 5.474532 TGCATCTGATTTTATGAGCCCATAC 59.525 40.000 0.00 0.00 35.16 2.39
2783 4510 6.128063 GCATCTGATTTTATGAGCCCATACTC 60.128 42.308 0.00 0.00 35.16 2.59
2784 4511 5.869579 TCTGATTTTATGAGCCCATACTCC 58.130 41.667 0.00 0.00 35.16 3.85
2785 4512 4.985538 TGATTTTATGAGCCCATACTCCC 58.014 43.478 0.00 0.00 35.16 4.30
2786 4513 4.665009 TGATTTTATGAGCCCATACTCCCT 59.335 41.667 0.00 0.00 35.16 4.20
2787 4514 4.706842 TTTTATGAGCCCATACTCCCTC 57.293 45.455 0.00 0.00 35.16 4.30
2788 4515 1.924731 TATGAGCCCATACTCCCTCG 58.075 55.000 0.00 0.00 35.72 4.63
2789 4516 0.833834 ATGAGCCCATACTCCCTCGG 60.834 60.000 0.00 0.00 35.72 4.63
2791 4518 1.457831 AGCCCATACTCCCTCGGTC 60.458 63.158 0.00 0.00 0.00 4.79
2792 4519 2.508751 GCCCATACTCCCTCGGTCC 61.509 68.421 0.00 0.00 0.00 4.46
2793 4520 1.837499 CCCATACTCCCTCGGTCCC 60.837 68.421 0.00 0.00 0.00 4.46
2795 4522 0.828343 CCATACTCCCTCGGTCCCTC 60.828 65.000 0.00 0.00 0.00 4.30
2796 4523 0.828343 CATACTCCCTCGGTCCCTCC 60.828 65.000 0.00 0.00 0.00 4.30
2806 5646 3.948735 GGTCCCTCCGTCATTTTGA 57.051 52.632 0.00 0.00 0.00 2.69
2809 5649 1.401905 GTCCCTCCGTCATTTTGATGC 59.598 52.381 0.00 0.00 32.19 3.91
2827 5673 5.073428 TGATGCCATGTAGTTTGTTGGTTA 58.927 37.500 0.00 0.00 0.00 2.85
2836 5682 8.751335 CATGTAGTTTGTTGGTTATTTGTCAAC 58.249 33.333 0.00 0.00 40.59 3.18
2850 5696 9.821662 GTTATTTGTCAACCTTAACACATACTC 57.178 33.333 7.10 0.00 0.00 2.59
2852 5698 4.901868 TGTCAACCTTAACACATACTCCC 58.098 43.478 0.00 0.00 0.00 4.30
2855 5701 4.224370 TCAACCTTAACACATACTCCCTCC 59.776 45.833 0.00 0.00 0.00 4.30
2857 5703 2.764572 CCTTAACACATACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
2858 5704 3.181478 CCTTAACACATACTCCCTCCGTC 60.181 52.174 0.00 0.00 0.00 4.79
2859 5705 1.192428 AACACATACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
2860 5706 0.686769 ACACATACTCCCTCCGTCCC 60.687 60.000 0.00 0.00 0.00 4.46
2861 5707 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2862 5708 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2863 5709 0.464452 CATACTCCCTCCGTCCCAAC 59.536 60.000 0.00 0.00 0.00 3.77
2864 5710 0.042131 ATACTCCCTCCGTCCCAACA 59.958 55.000 0.00 0.00 0.00 3.33
2865 5711 0.042131 TACTCCCTCCGTCCCAACAT 59.958 55.000 0.00 0.00 0.00 2.71
2866 5712 0.042131 ACTCCCTCCGTCCCAACATA 59.958 55.000 0.00 0.00 0.00 2.29
2867 5713 1.200519 CTCCCTCCGTCCCAACATAA 58.799 55.000 0.00 0.00 0.00 1.90
2868 5714 1.768870 CTCCCTCCGTCCCAACATAAT 59.231 52.381 0.00 0.00 0.00 1.28
2869 5715 2.172717 CTCCCTCCGTCCCAACATAATT 59.827 50.000 0.00 0.00 0.00 1.40
2870 5716 2.092646 TCCCTCCGTCCCAACATAATTG 60.093 50.000 0.00 0.00 0.00 2.32
2871 5717 2.092646 CCCTCCGTCCCAACATAATTGA 60.093 50.000 0.00 0.00 0.00 2.57
2872 5718 2.943033 CCTCCGTCCCAACATAATTGAC 59.057 50.000 0.00 0.00 0.00 3.18
2873 5719 3.370527 CCTCCGTCCCAACATAATTGACT 60.371 47.826 0.00 0.00 0.00 3.41
2874 5720 3.869065 TCCGTCCCAACATAATTGACTC 58.131 45.455 0.00 0.00 0.00 3.36
2875 5721 3.262151 TCCGTCCCAACATAATTGACTCA 59.738 43.478 0.00 0.00 0.00 3.41
2876 5722 4.006989 CCGTCCCAACATAATTGACTCAA 58.993 43.478 0.00 0.00 0.00 3.02
2877 5723 4.142687 CCGTCCCAACATAATTGACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
2878 5724 4.695455 CGTCCCAACATAATTGACTCAACT 59.305 41.667 0.00 0.00 0.00 3.16
2879 5725 5.181245 CGTCCCAACATAATTGACTCAACTT 59.819 40.000 0.00 0.00 0.00 2.66
2880 5726 6.293955 CGTCCCAACATAATTGACTCAACTTT 60.294 38.462 0.00 0.00 0.00 2.66
2881 5727 7.433680 GTCCCAACATAATTGACTCAACTTTT 58.566 34.615 0.00 0.00 0.00 2.27
2882 5728 7.595130 GTCCCAACATAATTGACTCAACTTTTC 59.405 37.037 0.00 0.00 0.00 2.29
2883 5729 6.868339 CCCAACATAATTGACTCAACTTTTCC 59.132 38.462 0.00 0.00 0.00 3.13
2884 5730 7.255942 CCCAACATAATTGACTCAACTTTTCCT 60.256 37.037 0.00 0.00 0.00 3.36
2885 5731 7.809806 CCAACATAATTGACTCAACTTTTCCTC 59.190 37.037 0.00 0.00 0.00 3.71
2886 5732 7.454260 ACATAATTGACTCAACTTTTCCTCC 57.546 36.000 0.00 0.00 0.00 4.30
2887 5733 7.004086 ACATAATTGACTCAACTTTTCCTCCA 58.996 34.615 0.00 0.00 0.00 3.86
2888 5734 7.671398 ACATAATTGACTCAACTTTTCCTCCAT 59.329 33.333 0.00 0.00 0.00 3.41
2889 5735 5.972107 ATTGACTCAACTTTTCCTCCATG 57.028 39.130 0.00 0.00 0.00 3.66
2890 5736 3.754965 TGACTCAACTTTTCCTCCATGG 58.245 45.455 4.97 4.97 37.10 3.66
2891 5737 2.489722 GACTCAACTTTTCCTCCATGGC 59.510 50.000 6.96 0.00 35.26 4.40
2892 5738 2.108952 ACTCAACTTTTCCTCCATGGCT 59.891 45.455 6.96 0.00 35.26 4.75
2893 5739 2.751806 CTCAACTTTTCCTCCATGGCTC 59.248 50.000 6.96 0.00 35.26 4.70
2894 5740 1.821136 CAACTTTTCCTCCATGGCTCC 59.179 52.381 6.96 0.00 35.26 4.70
2895 5741 0.035056 ACTTTTCCTCCATGGCTCCG 60.035 55.000 6.96 0.00 35.26 4.63
2896 5742 0.035056 CTTTTCCTCCATGGCTCCGT 60.035 55.000 6.96 0.00 35.26 4.69
2897 5743 0.035439 TTTTCCTCCATGGCTCCGTC 60.035 55.000 6.96 0.00 35.26 4.79
2898 5744 2.238847 TTTCCTCCATGGCTCCGTCG 62.239 60.000 6.96 0.00 35.26 5.12
2899 5745 4.899239 CCTCCATGGCTCCGTCGC 62.899 72.222 6.96 0.00 0.00 5.19
2900 5746 4.147449 CTCCATGGCTCCGTCGCA 62.147 66.667 6.96 0.00 0.00 5.10
2901 5747 3.664025 CTCCATGGCTCCGTCGCAA 62.664 63.158 6.96 0.00 0.00 4.85
2902 5748 2.514592 CCATGGCTCCGTCGCAAT 60.515 61.111 0.00 0.00 0.00 3.56
2903 5749 1.227527 CCATGGCTCCGTCGCAATA 60.228 57.895 0.00 0.00 0.00 1.90
2904 5750 1.498865 CCATGGCTCCGTCGCAATAC 61.499 60.000 0.00 0.00 0.00 1.89
2905 5751 0.809636 CATGGCTCCGTCGCAATACA 60.810 55.000 0.00 0.00 0.00 2.29
2906 5752 0.107897 ATGGCTCCGTCGCAATACAA 60.108 50.000 0.00 0.00 0.00 2.41
2907 5753 0.107897 TGGCTCCGTCGCAATACAAT 60.108 50.000 0.00 0.00 0.00 2.71
2908 5754 0.304705 GGCTCCGTCGCAATACAATG 59.695 55.000 0.00 0.00 0.00 2.82
2909 5755 1.006832 GCTCCGTCGCAATACAATGT 58.993 50.000 0.00 0.00 0.00 2.71
2910 5756 1.396996 GCTCCGTCGCAATACAATGTT 59.603 47.619 0.00 0.00 0.00 2.71
2911 5757 2.787723 GCTCCGTCGCAATACAATGTTG 60.788 50.000 0.00 0.00 0.00 3.33
2912 5758 2.670905 CTCCGTCGCAATACAATGTTGA 59.329 45.455 0.00 0.00 0.00 3.18
2913 5759 2.670905 TCCGTCGCAATACAATGTTGAG 59.329 45.455 0.00 0.00 0.00 3.02
2914 5760 2.415168 CCGTCGCAATACAATGTTGAGT 59.585 45.455 0.00 0.00 0.00 3.41
2915 5761 3.483574 CCGTCGCAATACAATGTTGAGTC 60.484 47.826 0.00 0.00 0.00 3.36
2916 5762 3.122780 CGTCGCAATACAATGTTGAGTCA 59.877 43.478 0.00 0.00 0.00 3.41
2917 5763 4.201714 CGTCGCAATACAATGTTGAGTCAT 60.202 41.667 0.00 0.00 0.00 3.06
2918 5764 5.631026 GTCGCAATACAATGTTGAGTCATT 58.369 37.500 0.00 0.00 38.38 2.57
2919 5765 6.086222 GTCGCAATACAATGTTGAGTCATTT 58.914 36.000 0.00 0.00 36.10 2.32
2920 5766 7.240674 GTCGCAATACAATGTTGAGTCATTTA 58.759 34.615 0.00 0.00 36.10 1.40
2921 5767 7.910162 GTCGCAATACAATGTTGAGTCATTTAT 59.090 33.333 0.00 0.00 36.10 1.40
2922 5768 8.458052 TCGCAATACAATGTTGAGTCATTTATT 58.542 29.630 0.00 0.00 36.10 1.40
2923 5769 9.075519 CGCAATACAATGTTGAGTCATTTATTT 57.924 29.630 0.00 0.00 36.10 1.40
2927 5773 9.874205 ATACAATGTTGAGTCATTTATTTTGGG 57.126 29.630 0.00 0.00 36.10 4.12
2928 5774 7.961351 ACAATGTTGAGTCATTTATTTTGGGA 58.039 30.769 0.00 0.00 36.10 4.37
2929 5775 7.872483 ACAATGTTGAGTCATTTATTTTGGGAC 59.128 33.333 0.00 0.00 36.10 4.46
2930 5776 6.007936 TGTTGAGTCATTTATTTTGGGACG 57.992 37.500 0.00 0.00 33.84 4.79
2931 5777 5.765677 TGTTGAGTCATTTATTTTGGGACGA 59.234 36.000 0.00 0.00 33.84 4.20
2932 5778 6.263392 TGTTGAGTCATTTATTTTGGGACGAA 59.737 34.615 0.00 0.00 33.84 3.85
2933 5779 6.494893 TGAGTCATTTATTTTGGGACGAAG 57.505 37.500 0.00 0.00 33.84 3.79
2934 5780 5.414454 TGAGTCATTTATTTTGGGACGAAGG 59.586 40.000 0.00 0.00 33.84 3.46
2935 5781 5.566469 AGTCATTTATTTTGGGACGAAGGA 58.434 37.500 0.00 0.00 33.84 3.36
2936 5782 6.007703 AGTCATTTATTTTGGGACGAAGGAA 58.992 36.000 0.00 0.00 33.84 3.36
2937 5783 6.151144 AGTCATTTATTTTGGGACGAAGGAAG 59.849 38.462 0.00 0.00 33.84 3.46
2938 5784 6.007703 TCATTTATTTTGGGACGAAGGAAGT 58.992 36.000 0.00 0.00 0.00 3.01
2939 5785 7.120138 GTCATTTATTTTGGGACGAAGGAAGTA 59.880 37.037 0.00 0.00 0.00 2.24
2940 5786 7.832187 TCATTTATTTTGGGACGAAGGAAGTAT 59.168 33.333 0.00 0.00 0.00 2.12
2941 5787 9.116067 CATTTATTTTGGGACGAAGGAAGTATA 57.884 33.333 0.00 0.00 0.00 1.47
2942 5788 9.862149 ATTTATTTTGGGACGAAGGAAGTATAT 57.138 29.630 0.00 0.00 0.00 0.86
2943 5789 8.897872 TTATTTTGGGACGAAGGAAGTATATC 57.102 34.615 0.00 0.00 0.00 1.63
2944 5790 5.943349 TTTGGGACGAAGGAAGTATATCA 57.057 39.130 0.00 0.00 0.00 2.15
2945 5791 5.943349 TTGGGACGAAGGAAGTATATCAA 57.057 39.130 0.00 0.00 0.00 2.57
2968 5814 8.920665 TCAATTTAAAATCCGTGTTTGCTAATG 58.079 29.630 0.00 0.00 0.00 1.90
2997 5843 7.756722 CAGTTGCCTGAAATTATTCTAGGTTTG 59.243 37.037 8.53 1.60 41.50 2.93
3055 5901 0.772124 AGTCCTCCCCAGCCTCAAAA 60.772 55.000 0.00 0.00 0.00 2.44
3056 5902 0.332972 GTCCTCCCCAGCCTCAAAAT 59.667 55.000 0.00 0.00 0.00 1.82
3083 5929 1.229082 TCCTCAGCCCGTAACCAGT 60.229 57.895 0.00 0.00 0.00 4.00
3131 5977 1.747709 TTGAAAACCGTTCGGGACAA 58.252 45.000 15.66 11.74 39.97 3.18
3204 6050 1.305465 TAGCCAGGCTTGGTACGGA 60.305 57.895 22.26 0.00 46.80 4.69
3205 6051 1.327690 TAGCCAGGCTTGGTACGGAG 61.328 60.000 22.26 0.00 46.80 4.63
3596 6444 1.458639 GGGCAAGCTGTGAACAAGCT 61.459 55.000 0.00 0.00 41.08 3.74
3608 6456 0.035458 AACAAGCTGGAGGACGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
3609 6457 1.743252 CAAGCTGGAGGACGAAGGC 60.743 63.158 0.00 0.00 0.00 4.35
3610 6458 2.960688 AAGCTGGAGGACGAAGGCC 61.961 63.158 0.00 0.00 0.00 5.19
3611 6459 3.706373 GCTGGAGGACGAAGGCCA 61.706 66.667 5.01 0.00 0.00 5.36
3612 6460 3.068881 CTGGAGGACGAAGGCCAA 58.931 61.111 5.01 0.00 0.00 4.52
3613 6461 1.078848 CTGGAGGACGAAGGCCAAG 60.079 63.158 5.01 0.00 0.00 3.61
3614 6462 2.269241 GGAGGACGAAGGCCAAGG 59.731 66.667 5.01 0.00 0.00 3.61
3615 6463 2.436824 GAGGACGAAGGCCAAGGC 60.437 66.667 5.01 1.52 41.06 4.35
3627 6475 2.672996 CAAGGCCCAAGGGTGACG 60.673 66.667 7.05 0.00 37.65 4.35
3628 6476 2.852075 AAGGCCCAAGGGTGACGA 60.852 61.111 7.05 0.00 37.65 4.20
3634 6482 1.336795 GCCCAAGGGTGACGAAAAATG 60.337 52.381 7.05 0.00 37.65 2.32
3642 6490 6.405278 AGGGTGACGAAAAATGATCTTTTT 57.595 33.333 12.28 12.28 34.64 1.94
3685 6535 2.535836 TAGGCGGGCCCTTTAAAATT 57.464 45.000 22.43 0.00 43.06 1.82
3686 6536 2.535836 AGGCGGGCCCTTTAAAATTA 57.464 45.000 22.43 0.00 43.06 1.40
3687 6537 2.384828 AGGCGGGCCCTTTAAAATTAG 58.615 47.619 22.43 0.04 43.06 1.73
3688 6538 2.024751 AGGCGGGCCCTTTAAAATTAGA 60.025 45.455 22.43 0.00 43.06 2.10
3689 6539 2.761767 GGCGGGCCCTTTAAAATTAGAA 59.238 45.455 22.43 0.00 0.00 2.10
3690 6540 3.386726 GGCGGGCCCTTTAAAATTAGAAT 59.613 43.478 22.43 0.00 0.00 2.40
3696 6546 5.453339 GGCCCTTTAAAATTAGAATCCTGCC 60.453 44.000 0.00 0.00 0.00 4.85
3714 6564 4.506271 CCTGCCTTGCCTGATAGACATATT 60.506 45.833 0.00 0.00 0.00 1.28
3723 6573 7.056006 TGCCTGATAGACATATTTGTTGTCAT 58.944 34.615 6.59 0.00 44.73 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.483758 TCACTTTAACTTCCTCTGTACTTTCTT 58.516 33.333 0.00 0.00 0.00 2.52
1 2 8.019656 TCACTTTAACTTCCTCTGTACTTTCT 57.980 34.615 0.00 0.00 0.00 2.52
2 3 8.142551 TCTCACTTTAACTTCCTCTGTACTTTC 58.857 37.037 0.00 0.00 0.00 2.62
3 4 8.019656 TCTCACTTTAACTTCCTCTGTACTTT 57.980 34.615 0.00 0.00 0.00 2.66
4 5 7.598759 TCTCACTTTAACTTCCTCTGTACTT 57.401 36.000 0.00 0.00 0.00 2.24
5 6 7.784470 ATCTCACTTTAACTTCCTCTGTACT 57.216 36.000 0.00 0.00 0.00 2.73
6 7 9.575783 CTTATCTCACTTTAACTTCCTCTGTAC 57.424 37.037 0.00 0.00 0.00 2.90
7 8 9.310449 ACTTATCTCACTTTAACTTCCTCTGTA 57.690 33.333 0.00 0.00 0.00 2.74
8 9 8.196378 ACTTATCTCACTTTAACTTCCTCTGT 57.804 34.615 0.00 0.00 0.00 3.41
20 21 9.587772 GACACACACATATACTTATCTCACTTT 57.412 33.333 0.00 0.00 0.00 2.66
21 22 8.749354 TGACACACACATATACTTATCTCACTT 58.251 33.333 0.00 0.00 0.00 3.16
22 23 8.293699 TGACACACACATATACTTATCTCACT 57.706 34.615 0.00 0.00 0.00 3.41
23 24 9.186323 GATGACACACACATATACTTATCTCAC 57.814 37.037 0.00 0.00 0.00 3.51
24 25 8.912988 TGATGACACACACATATACTTATCTCA 58.087 33.333 0.00 0.00 0.00 3.27
25 26 9.920133 ATGATGACACACACATATACTTATCTC 57.080 33.333 0.00 0.00 0.00 2.75
26 27 9.920133 GATGATGACACACACATATACTTATCT 57.080 33.333 0.00 0.00 0.00 1.98
27 28 9.920133 AGATGATGACACACACATATACTTATC 57.080 33.333 0.00 0.00 0.00 1.75
30 31 7.869937 GCTAGATGATGACACACACATATACTT 59.130 37.037 0.00 0.00 0.00 2.24
31 32 7.232330 AGCTAGATGATGACACACACATATACT 59.768 37.037 0.00 0.00 0.00 2.12
32 33 7.328005 CAGCTAGATGATGACACACACATATAC 59.672 40.741 0.40 0.00 33.12 1.47
33 34 7.373493 CAGCTAGATGATGACACACACATATA 58.627 38.462 0.40 0.00 33.12 0.86
34 35 6.221659 CAGCTAGATGATGACACACACATAT 58.778 40.000 0.40 0.00 33.12 1.78
35 36 5.452356 CCAGCTAGATGATGACACACACATA 60.452 44.000 10.19 0.00 33.12 2.29
36 37 4.439968 CAGCTAGATGATGACACACACAT 58.560 43.478 0.40 0.00 33.12 3.21
37 38 3.368739 CCAGCTAGATGATGACACACACA 60.369 47.826 10.19 0.00 33.12 3.72
38 39 3.193263 CCAGCTAGATGATGACACACAC 58.807 50.000 10.19 0.00 33.12 3.82
39 40 2.419159 GCCAGCTAGATGATGACACACA 60.419 50.000 10.19 0.00 33.12 3.72
40 41 2.158986 AGCCAGCTAGATGATGACACAC 60.159 50.000 10.19 0.00 33.12 3.82
41 42 2.113807 AGCCAGCTAGATGATGACACA 58.886 47.619 10.19 0.00 33.12 3.72
42 43 2.906691 AGCCAGCTAGATGATGACAC 57.093 50.000 10.19 0.00 33.12 3.67
43 44 3.837355 TCTAGCCAGCTAGATGATGACA 58.163 45.455 22.42 1.39 46.94 3.58
52 53 2.036862 TGTCATGCATCTAGCCAGCTAG 59.963 50.000 18.68 18.68 45.38 3.42
53 54 2.041701 TGTCATGCATCTAGCCAGCTA 58.958 47.619 0.00 0.00 44.83 3.32
54 55 0.835276 TGTCATGCATCTAGCCAGCT 59.165 50.000 0.00 0.00 44.83 4.24
55 56 1.893544 ATGTCATGCATCTAGCCAGC 58.106 50.000 0.00 0.00 44.83 4.85
56 57 2.031069 GCAATGTCATGCATCTAGCCAG 60.031 50.000 0.00 0.00 45.70 4.85
57 58 1.951602 GCAATGTCATGCATCTAGCCA 59.048 47.619 0.00 0.00 45.70 4.75
58 59 2.701073 GCAATGTCATGCATCTAGCC 57.299 50.000 0.00 0.00 45.70 3.93
66 67 7.278424 ACATTAACCTTAATTGCAATGTCATGC 59.722 33.333 13.82 0.00 37.75 4.06
67 68 8.597227 CACATTAACCTTAATTGCAATGTCATG 58.403 33.333 13.82 13.36 35.12 3.07
68 69 7.765360 CCACATTAACCTTAATTGCAATGTCAT 59.235 33.333 13.82 0.00 35.12 3.06
69 70 7.095910 CCACATTAACCTTAATTGCAATGTCA 58.904 34.615 13.82 0.00 35.12 3.58
70 71 6.534793 CCCACATTAACCTTAATTGCAATGTC 59.465 38.462 13.82 0.00 35.12 3.06
71 72 6.405538 CCCACATTAACCTTAATTGCAATGT 58.594 36.000 13.82 3.29 37.14 2.71
72 73 5.294060 GCCCACATTAACCTTAATTGCAATG 59.706 40.000 13.82 2.58 31.28 2.82
73 74 5.427378 GCCCACATTAACCTTAATTGCAAT 58.573 37.500 5.99 5.99 31.28 3.56
74 75 4.323104 GGCCCACATTAACCTTAATTGCAA 60.323 41.667 0.00 0.00 31.28 4.08
75 76 3.196685 GGCCCACATTAACCTTAATTGCA 59.803 43.478 0.00 0.00 31.28 4.08
76 77 3.736740 CGGCCCACATTAACCTTAATTGC 60.737 47.826 0.00 0.00 31.28 3.56
77 78 3.181480 CCGGCCCACATTAACCTTAATTG 60.181 47.826 0.00 0.00 31.28 2.32
78 79 3.028130 CCGGCCCACATTAACCTTAATT 58.972 45.455 0.00 0.00 31.28 1.40
79 80 2.661718 CCGGCCCACATTAACCTTAAT 58.338 47.619 0.00 0.00 33.82 1.40
80 81 1.341187 CCCGGCCCACATTAACCTTAA 60.341 52.381 0.00 0.00 0.00 1.85
81 82 0.256464 CCCGGCCCACATTAACCTTA 59.744 55.000 0.00 0.00 0.00 2.69
82 83 1.000145 CCCGGCCCACATTAACCTT 60.000 57.895 0.00 0.00 0.00 3.50
83 84 2.680965 CCCGGCCCACATTAACCT 59.319 61.111 0.00 0.00 0.00 3.50
84 85 2.441348 CCCCGGCCCACATTAACC 60.441 66.667 0.00 0.00 0.00 2.85
85 86 1.000646 TTCCCCGGCCCACATTAAC 60.001 57.895 0.00 0.00 0.00 2.01
86 87 1.304952 CTTCCCCGGCCCACATTAA 59.695 57.895 0.00 0.00 0.00 1.40
87 88 2.685534 CCTTCCCCGGCCCACATTA 61.686 63.158 0.00 0.00 0.00 1.90
88 89 4.060667 CCTTCCCCGGCCCACATT 62.061 66.667 0.00 0.00 0.00 2.71
93 94 3.751018 AATTCCCTTCCCCGGCCC 61.751 66.667 0.00 0.00 0.00 5.80
94 95 2.442087 CAATTCCCTTCCCCGGCC 60.442 66.667 0.00 0.00 0.00 6.13
95 96 1.453928 CTCAATTCCCTTCCCCGGC 60.454 63.158 0.00 0.00 0.00 6.13
96 97 0.181350 CTCTCAATTCCCTTCCCCGG 59.819 60.000 0.00 0.00 0.00 5.73
97 98 0.181350 CCTCTCAATTCCCTTCCCCG 59.819 60.000 0.00 0.00 0.00 5.73
98 99 1.492599 CTCCTCTCAATTCCCTTCCCC 59.507 57.143 0.00 0.00 0.00 4.81
99 100 2.482494 TCTCCTCTCAATTCCCTTCCC 58.518 52.381 0.00 0.00 0.00 3.97
100 101 4.265893 GTTTCTCCTCTCAATTCCCTTCC 58.734 47.826 0.00 0.00 0.00 3.46
101 102 4.263506 TGGTTTCTCCTCTCAATTCCCTTC 60.264 45.833 0.00 0.00 37.07 3.46
102 103 3.657727 TGGTTTCTCCTCTCAATTCCCTT 59.342 43.478 0.00 0.00 37.07 3.95
103 104 3.260205 TGGTTTCTCCTCTCAATTCCCT 58.740 45.455 0.00 0.00 37.07 4.20
104 105 3.721087 TGGTTTCTCCTCTCAATTCCC 57.279 47.619 0.00 0.00 37.07 3.97
105 106 6.830838 ACAATATGGTTTCTCCTCTCAATTCC 59.169 38.462 0.00 0.00 37.07 3.01
106 107 7.872113 ACAATATGGTTTCTCCTCTCAATTC 57.128 36.000 0.00 0.00 37.07 2.17
107 108 8.655935 AAACAATATGGTTTCTCCTCTCAATT 57.344 30.769 2.11 0.00 36.26 2.32
108 109 9.927081 ATAAACAATATGGTTTCTCCTCTCAAT 57.073 29.630 11.59 0.00 41.07 2.57
155 156 7.654022 TTTACCTTTTTGGACTTGATGTTCT 57.346 32.000 0.00 0.00 39.71 3.01
177 178 6.145535 GTCGACAATCTCAAATGCTTCTTTT 58.854 36.000 11.55 0.00 0.00 2.27
191 192 8.300286 CACTATTGATATGTAGGTCGACAATCT 58.700 37.037 18.91 7.98 31.83 2.40
199 200 9.988815 ACATTCTTCACTATTGATATGTAGGTC 57.011 33.333 0.00 0.00 31.76 3.85
213 214 5.048294 TGTGACTCGCTTACATTCTTCACTA 60.048 40.000 0.00 0.00 34.51 2.74
221 222 5.812642 CCTCTAATTGTGACTCGCTTACATT 59.187 40.000 0.00 0.00 0.00 2.71
229 230 8.596380 GTTTTATTCTCCTCTAATTGTGACTCG 58.404 37.037 0.00 0.00 0.00 4.18
232 233 8.561738 TGGTTTTATTCTCCTCTAATTGTGAC 57.438 34.615 0.00 0.00 0.00 3.67
266 293 9.174166 ACCTAGCTAACATATCGTTTCAATTTT 57.826 29.630 0.00 0.00 39.14 1.82
274 301 4.099573 ACTGCACCTAGCTAACATATCGTT 59.900 41.667 0.00 0.00 45.94 3.85
301 328 7.860373 GCACTTGTACATAACTGTGATTGAAAA 59.140 33.333 0.00 0.00 36.23 2.29
307 334 6.172630 TCATGCACTTGTACATAACTGTGAT 58.827 36.000 0.00 0.00 36.23 3.06
313 340 6.968904 CCAAAGATCATGCACTTGTACATAAC 59.031 38.462 0.00 0.00 0.00 1.89
319 346 4.032960 ACCCAAAGATCATGCACTTGTA 57.967 40.909 0.00 0.00 0.00 2.41
457 484 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
458 485 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
459 486 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
460 487 8.421784 AGATACGGAGCAAAATAAGTGAATCTA 58.578 33.333 0.00 0.00 0.00 1.98
461 488 7.275920 AGATACGGAGCAAAATAAGTGAATCT 58.724 34.615 0.00 0.00 0.00 2.40
462 489 7.484035 AGATACGGAGCAAAATAAGTGAATC 57.516 36.000 0.00 0.00 0.00 2.52
463 490 8.958119 TTAGATACGGAGCAAAATAAGTGAAT 57.042 30.769 0.00 0.00 0.00 2.57
464 491 8.958119 ATTAGATACGGAGCAAAATAAGTGAA 57.042 30.769 0.00 0.00 0.00 3.18
465 492 8.958119 AATTAGATACGGAGCAAAATAAGTGA 57.042 30.769 0.00 0.00 0.00 3.41
472 499 9.781834 CAACAAATAATTAGATACGGAGCAAAA 57.218 29.630 0.00 0.00 0.00 2.44
473 500 8.402472 CCAACAAATAATTAGATACGGAGCAAA 58.598 33.333 0.00 0.00 0.00 3.68
474 501 7.771361 TCCAACAAATAATTAGATACGGAGCAA 59.229 33.333 0.00 0.00 0.00 3.91
475 502 7.276658 TCCAACAAATAATTAGATACGGAGCA 58.723 34.615 0.00 0.00 0.00 4.26
476 503 7.724305 TCCAACAAATAATTAGATACGGAGC 57.276 36.000 0.00 0.00 0.00 4.70
508 535 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
509 536 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
510 537 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
511 538 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
512 539 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
513 540 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
514 541 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
515 542 9.684702 AACTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
516 543 9.101325 CAACTACTCCCTCCATTCCTAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
517 544 7.017651 CCAACTACTCCCTCCATTCCTAAATAT 59.982 40.741 0.00 0.00 0.00 1.28
518 545 6.329197 CCAACTACTCCCTCCATTCCTAAATA 59.671 42.308 0.00 0.00 0.00 1.40
519 546 5.132816 CCAACTACTCCCTCCATTCCTAAAT 59.867 44.000 0.00 0.00 0.00 1.40
520 547 4.473559 CCAACTACTCCCTCCATTCCTAAA 59.526 45.833 0.00 0.00 0.00 1.85
521 548 4.037927 CCAACTACTCCCTCCATTCCTAA 58.962 47.826 0.00 0.00 0.00 2.69
522 549 3.013648 ACCAACTACTCCCTCCATTCCTA 59.986 47.826 0.00 0.00 0.00 2.94
523 550 2.225908 ACCAACTACTCCCTCCATTCCT 60.226 50.000 0.00 0.00 0.00 3.36
524 551 2.092914 CACCAACTACTCCCTCCATTCC 60.093 54.545 0.00 0.00 0.00 3.01
525 552 2.838202 TCACCAACTACTCCCTCCATTC 59.162 50.000 0.00 0.00 0.00 2.67
526 553 2.915869 TCACCAACTACTCCCTCCATT 58.084 47.619 0.00 0.00 0.00 3.16
527 554 2.642171 TCACCAACTACTCCCTCCAT 57.358 50.000 0.00 0.00 0.00 3.41
528 555 2.642171 ATCACCAACTACTCCCTCCA 57.358 50.000 0.00 0.00 0.00 3.86
529 556 4.409247 ACAATATCACCAACTACTCCCTCC 59.591 45.833 0.00 0.00 0.00 4.30
530 557 5.128827 TGACAATATCACCAACTACTCCCTC 59.871 44.000 0.00 0.00 29.99 4.30
531 558 5.030147 TGACAATATCACCAACTACTCCCT 58.970 41.667 0.00 0.00 29.99 4.20
532 559 5.353394 TGACAATATCACCAACTACTCCC 57.647 43.478 0.00 0.00 29.99 4.30
533 560 5.360591 CCTGACAATATCACCAACTACTCC 58.639 45.833 0.00 0.00 32.37 3.85
534 561 5.360591 CCCTGACAATATCACCAACTACTC 58.639 45.833 0.00 0.00 32.37 2.59
535 562 4.164221 CCCCTGACAATATCACCAACTACT 59.836 45.833 0.00 0.00 32.37 2.57
536 563 4.163458 TCCCCTGACAATATCACCAACTAC 59.837 45.833 0.00 0.00 32.37 2.73
550 577 2.838202 GTGACCTCTTTATCCCCTGACA 59.162 50.000 0.00 0.00 0.00 3.58
581 608 2.436417 ACACACATGGATTGCTGGTAC 58.564 47.619 0.00 0.00 0.00 3.34
588 615 7.943413 TTTGAACATAAACACACATGGATTG 57.057 32.000 0.00 0.00 0.00 2.67
589 616 8.954950 TTTTTGAACATAAACACACATGGATT 57.045 26.923 0.00 0.00 0.00 3.01
615 642 8.330466 TGAAACATAAATGACCGAGTAAATGT 57.670 30.769 0.00 0.00 0.00 2.71
616 643 9.619316 TTTGAAACATAAATGACCGAGTAAATG 57.381 29.630 0.00 0.00 0.00 2.32
618 645 9.672086 CTTTTGAAACATAAATGACCGAGTAAA 57.328 29.630 0.00 0.00 0.00 2.01
619 646 8.842280 ACTTTTGAAACATAAATGACCGAGTAA 58.158 29.630 0.00 0.00 0.00 2.24
639 666 7.383843 ACATATTACCCGCAAAAGAAACTTTTG 59.616 33.333 23.80 23.80 41.09 2.44
648 1275 9.198837 ACTTTTAAAACATATTACCCGCAAAAG 57.801 29.630 0.00 0.00 36.08 2.27
652 1279 6.208994 ACCACTTTTAAAACATATTACCCGCA 59.791 34.615 0.00 0.00 0.00 5.69
654 1281 7.595604 ACACCACTTTTAAAACATATTACCCG 58.404 34.615 0.00 0.00 0.00 5.28
655 1282 8.030692 GGACACCACTTTTAAAACATATTACCC 58.969 37.037 0.00 0.00 0.00 3.69
656 1283 8.799367 AGGACACCACTTTTAAAACATATTACC 58.201 33.333 0.00 0.00 0.00 2.85
667 1294 3.118702 TGACACGAGGACACCACTTTTAA 60.119 43.478 0.00 0.00 0.00 1.52
675 1302 3.982576 AAATTTTGACACGAGGACACC 57.017 42.857 0.00 0.00 0.00 4.16
677 1304 8.410141 AGAATTTTAAATTTTGACACGAGGACA 58.590 29.630 4.32 0.00 0.00 4.02
680 1307 9.893305 ACTAGAATTTTAAATTTTGACACGAGG 57.107 29.630 4.32 0.00 0.00 4.63
684 1311 9.176181 TGCGACTAGAATTTTAAATTTTGACAC 57.824 29.630 4.32 0.00 0.00 3.67
706 1334 2.847959 TGATACCGTCGTTTATGCGA 57.152 45.000 0.00 0.00 38.68 5.10
715 1343 2.909244 GCGAACAGATATGATACCGTCG 59.091 50.000 0.00 0.00 0.00 5.12
752 1944 8.404107 TGCTAAATTTAATCCATAGTTAGCCC 57.596 34.615 11.62 0.00 40.64 5.19
767 1959 8.927721 GGAGCCGTTTTAAAATTGCTAAATTTA 58.072 29.630 20.48 0.00 43.63 1.40
768 1960 7.094975 GGGAGCCGTTTTAAAATTGCTAAATTT 60.095 33.333 20.48 0.00 45.81 1.82
844 2043 3.075005 ATAGTGGTCCGCGTGGCT 61.075 61.111 11.05 3.93 34.14 4.75
865 2064 4.307032 AGGTCTTGCATGGTCAACTATT 57.693 40.909 0.00 0.00 0.00 1.73
896 2095 4.703897 TGAACTCGAAAATCCTGTTCAGT 58.296 39.130 9.34 0.00 41.02 3.41
938 2157 0.666274 TGCGTGTATATAGCCTGCGC 60.666 55.000 0.00 0.00 43.07 6.09
979 2227 4.781570 TCGTCAACGAATGGCCAA 57.218 50.000 10.96 0.00 46.30 4.52
992 2240 1.750572 CGAGCTCTGCATGCTTCGTC 61.751 60.000 20.33 8.24 41.30 4.20
1028 2276 2.191513 ATTGCTAGCAGCGCCATGG 61.192 57.895 18.45 7.63 46.26 3.66
1087 2335 4.514577 CGCGAGGAAGCCATCGGT 62.515 66.667 0.00 0.00 39.31 4.69
1809 3070 1.195442 TGGTTAGGATGTCCACGGCA 61.195 55.000 1.30 0.00 38.89 5.69
2052 3776 0.530744 TCCGGTTCAAGATGTCCTCG 59.469 55.000 0.00 0.00 0.00 4.63
2445 4172 2.646175 GGCCTCGTAGCTGGTGACA 61.646 63.158 0.00 0.00 39.59 3.58
2592 4319 0.539438 GCCCCATGGTCAGTTGTTCA 60.539 55.000 11.73 0.00 0.00 3.18
2593 4320 0.539438 TGCCCCATGGTCAGTTGTTC 60.539 55.000 11.73 0.00 0.00 3.18
2597 4324 0.612732 CACATGCCCCATGGTCAGTT 60.613 55.000 11.73 0.00 45.16 3.16
2608 4335 0.321564 TCTATATGCGCCACATGCCC 60.322 55.000 4.18 0.00 40.06 5.36
2611 4338 3.242091 GCGTAATCTATATGCGCCACATG 60.242 47.826 4.18 0.00 41.93 3.21
2621 4348 8.904834 ACGAATCAGGATTAGCGTAATCTATAT 58.095 33.333 13.67 0.00 43.15 0.86
2624 4351 6.570672 ACGAATCAGGATTAGCGTAATCTA 57.429 37.500 13.67 5.06 43.15 1.98
2625 4352 5.455056 ACGAATCAGGATTAGCGTAATCT 57.545 39.130 13.67 0.00 43.15 2.40
2627 4354 4.023450 TCGACGAATCAGGATTAGCGTAAT 60.023 41.667 8.23 0.00 33.37 1.89
2684 4411 3.057386 TCGCCGCCGAATATACATAAGAA 60.057 43.478 0.00 0.00 41.17 2.52
2700 4427 4.330740 TTTTAGACTGTATTTTCGCCGC 57.669 40.909 0.00 0.00 0.00 6.53
2701 4428 5.188194 CGATTTTAGACTGTATTTTCGCCG 58.812 41.667 0.00 0.00 0.00 6.46
2702 4429 5.957796 CACGATTTTAGACTGTATTTTCGCC 59.042 40.000 0.00 0.00 0.00 5.54
2713 4440 3.374058 CCGCCAAATCACGATTTTAGACT 59.626 43.478 2.24 0.00 38.84 3.24
2716 4443 4.035091 TCATCCGCCAAATCACGATTTTAG 59.965 41.667 2.24 0.00 38.84 1.85
2743 4470 8.873186 AAATCAGATGCATATATCATGTTCCA 57.127 30.769 0.00 0.00 0.00 3.53
2750 4477 9.117183 GGCTCATAAAATCAGATGCATATATCA 57.883 33.333 0.00 0.00 0.00 2.15
2751 4478 8.566260 GGGCTCATAAAATCAGATGCATATATC 58.434 37.037 0.00 0.00 0.00 1.63
2763 4490 4.665009 AGGGAGTATGGGCTCATAAAATCA 59.335 41.667 8.15 0.00 37.58 2.57
2773 4500 1.457831 GACCGAGGGAGTATGGGCT 60.458 63.158 0.00 0.00 0.00 5.19
2776 4503 0.828343 GAGGGACCGAGGGAGTATGG 60.828 65.000 0.00 0.00 0.00 2.74
2777 4504 0.828343 GGAGGGACCGAGGGAGTATG 60.828 65.000 0.00 0.00 0.00 2.39
2779 4506 3.013631 GGAGGGACCGAGGGAGTA 58.986 66.667 0.00 0.00 0.00 2.59
2788 4515 2.017049 CATCAAAATGACGGAGGGACC 58.983 52.381 0.00 0.00 34.61 4.46
2789 4516 1.401905 GCATCAAAATGACGGAGGGAC 59.598 52.381 0.00 0.00 34.61 4.46
2791 4518 0.740737 GGCATCAAAATGACGGAGGG 59.259 55.000 0.00 0.00 34.61 4.30
2792 4519 1.462616 TGGCATCAAAATGACGGAGG 58.537 50.000 0.00 0.00 44.62 4.30
2793 4520 2.424601 ACATGGCATCAAAATGACGGAG 59.575 45.455 0.00 0.00 44.62 4.63
2795 4522 2.945447 ACATGGCATCAAAATGACGG 57.055 45.000 0.00 0.00 44.62 4.79
2796 4523 4.621068 ACTACATGGCATCAAAATGACG 57.379 40.909 0.00 0.00 44.62 4.35
2797 4524 6.158598 ACAAACTACATGGCATCAAAATGAC 58.841 36.000 0.00 0.00 41.74 3.06
2806 5646 6.603940 AATAACCAACAAACTACATGGCAT 57.396 33.333 0.00 0.00 36.37 4.40
2809 5649 7.429633 TGACAAATAACCAACAAACTACATGG 58.570 34.615 0.00 0.00 38.91 3.66
2827 5673 6.433093 GGGAGTATGTGTTAAGGTTGACAAAT 59.567 38.462 0.00 0.00 30.72 2.32
2836 5682 2.764572 ACGGAGGGAGTATGTGTTAAGG 59.235 50.000 0.00 0.00 0.00 2.69
2850 5696 2.092646 TCAATTATGTTGGGACGGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
2852 5698 3.871594 GAGTCAATTATGTTGGGACGGAG 59.128 47.826 0.00 0.00 33.84 4.63
2855 5701 4.695455 AGTTGAGTCAATTATGTTGGGACG 59.305 41.667 9.18 0.00 33.84 4.79
2857 5703 7.255801 GGAAAAGTTGAGTCAATTATGTTGGGA 60.256 37.037 9.18 0.00 0.00 4.37
2858 5704 6.868339 GGAAAAGTTGAGTCAATTATGTTGGG 59.132 38.462 9.18 0.00 0.00 4.12
2859 5705 7.661040 AGGAAAAGTTGAGTCAATTATGTTGG 58.339 34.615 9.18 0.00 0.00 3.77
2860 5706 7.809806 GGAGGAAAAGTTGAGTCAATTATGTTG 59.190 37.037 9.18 0.00 0.00 3.33
2861 5707 7.505585 TGGAGGAAAAGTTGAGTCAATTATGTT 59.494 33.333 9.18 0.07 0.00 2.71
2862 5708 7.004086 TGGAGGAAAAGTTGAGTCAATTATGT 58.996 34.615 9.18 0.00 0.00 2.29
2863 5709 7.452880 TGGAGGAAAAGTTGAGTCAATTATG 57.547 36.000 9.18 0.00 0.00 1.90
2864 5710 7.123247 CCATGGAGGAAAAGTTGAGTCAATTAT 59.877 37.037 5.56 0.00 41.22 1.28
2865 5711 6.434028 CCATGGAGGAAAAGTTGAGTCAATTA 59.566 38.462 5.56 0.00 41.22 1.40
2866 5712 5.244626 CCATGGAGGAAAAGTTGAGTCAATT 59.755 40.000 5.56 1.20 41.22 2.32
2867 5713 4.768968 CCATGGAGGAAAAGTTGAGTCAAT 59.231 41.667 5.56 0.00 41.22 2.57
2868 5714 4.144297 CCATGGAGGAAAAGTTGAGTCAA 58.856 43.478 5.56 0.08 41.22 3.18
2869 5715 3.754965 CCATGGAGGAAAAGTTGAGTCA 58.245 45.455 5.56 0.00 41.22 3.41
2870 5716 2.489722 GCCATGGAGGAAAAGTTGAGTC 59.510 50.000 18.40 0.00 41.22 3.36
2871 5717 2.108952 AGCCATGGAGGAAAAGTTGAGT 59.891 45.455 18.40 0.00 41.22 3.41
2872 5718 2.751806 GAGCCATGGAGGAAAAGTTGAG 59.248 50.000 18.40 0.00 41.22 3.02
2873 5719 2.555227 GGAGCCATGGAGGAAAAGTTGA 60.555 50.000 18.40 0.00 41.22 3.18
2874 5720 1.821136 GGAGCCATGGAGGAAAAGTTG 59.179 52.381 18.40 0.00 41.22 3.16
2875 5721 1.614317 CGGAGCCATGGAGGAAAAGTT 60.614 52.381 18.40 0.00 41.22 2.66
2876 5722 0.035056 CGGAGCCATGGAGGAAAAGT 60.035 55.000 18.40 0.00 41.22 2.66
2877 5723 0.035056 ACGGAGCCATGGAGGAAAAG 60.035 55.000 18.40 1.59 41.22 2.27
2878 5724 0.035439 GACGGAGCCATGGAGGAAAA 60.035 55.000 18.40 0.00 41.22 2.29
2879 5725 1.602237 GACGGAGCCATGGAGGAAA 59.398 57.895 18.40 0.00 41.22 3.13
2880 5726 2.721167 CGACGGAGCCATGGAGGAA 61.721 63.158 18.40 0.00 41.22 3.36
2881 5727 3.147595 CGACGGAGCCATGGAGGA 61.148 66.667 18.40 0.00 41.22 3.71
2882 5728 4.899239 GCGACGGAGCCATGGAGG 62.899 72.222 18.40 2.87 41.84 4.30
2883 5729 2.930385 ATTGCGACGGAGCCATGGAG 62.930 60.000 18.40 5.64 36.02 3.86
2884 5730 1.681486 TATTGCGACGGAGCCATGGA 61.681 55.000 18.40 0.00 36.02 3.41
2885 5731 1.227527 TATTGCGACGGAGCCATGG 60.228 57.895 7.63 7.63 36.02 3.66
2886 5732 0.809636 TGTATTGCGACGGAGCCATG 60.810 55.000 0.00 0.00 36.02 3.66
2887 5733 0.107897 TTGTATTGCGACGGAGCCAT 60.108 50.000 0.00 0.00 36.02 4.40
2888 5734 0.107897 ATTGTATTGCGACGGAGCCA 60.108 50.000 0.00 0.00 36.02 4.75
2889 5735 0.304705 CATTGTATTGCGACGGAGCC 59.695 55.000 0.00 0.00 36.02 4.70
2890 5736 1.006832 ACATTGTATTGCGACGGAGC 58.993 50.000 0.00 0.00 37.71 4.70
2891 5737 2.670905 TCAACATTGTATTGCGACGGAG 59.329 45.455 0.00 0.00 0.00 4.63
2892 5738 2.670905 CTCAACATTGTATTGCGACGGA 59.329 45.455 0.00 0.00 0.00 4.69
2893 5739 2.415168 ACTCAACATTGTATTGCGACGG 59.585 45.455 0.00 0.00 0.00 4.79
2894 5740 3.122780 TGACTCAACATTGTATTGCGACG 59.877 43.478 0.00 0.00 0.00 5.12
2895 5741 4.661993 TGACTCAACATTGTATTGCGAC 57.338 40.909 0.00 0.00 0.00 5.19
2896 5742 5.878332 AATGACTCAACATTGTATTGCGA 57.122 34.783 0.00 0.00 38.76 5.10
2897 5743 8.619146 AATAAATGACTCAACATTGTATTGCG 57.381 30.769 0.00 0.00 39.88 4.85
2901 5747 9.874205 CCCAAAATAAATGACTCAACATTGTAT 57.126 29.630 0.00 0.00 39.88 2.29
2902 5748 9.083422 TCCCAAAATAAATGACTCAACATTGTA 57.917 29.630 0.00 0.00 39.88 2.41
2903 5749 7.872483 GTCCCAAAATAAATGACTCAACATTGT 59.128 33.333 0.00 0.00 39.88 2.71
2904 5750 7.062138 CGTCCCAAAATAAATGACTCAACATTG 59.938 37.037 0.00 0.00 39.88 2.82
2905 5751 7.040062 TCGTCCCAAAATAAATGACTCAACATT 60.040 33.333 0.00 0.00 41.43 2.71
2906 5752 6.432783 TCGTCCCAAAATAAATGACTCAACAT 59.567 34.615 0.00 0.00 0.00 2.71
2907 5753 5.765677 TCGTCCCAAAATAAATGACTCAACA 59.234 36.000 0.00 0.00 0.00 3.33
2908 5754 6.249035 TCGTCCCAAAATAAATGACTCAAC 57.751 37.500 0.00 0.00 0.00 3.18
2909 5755 6.072175 CCTTCGTCCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
2910 5756 5.414454 CCTTCGTCCCAAAATAAATGACTCA 59.586 40.000 0.00 0.00 0.00 3.41
2911 5757 5.646360 TCCTTCGTCCCAAAATAAATGACTC 59.354 40.000 0.00 0.00 0.00 3.36
2912 5758 5.566469 TCCTTCGTCCCAAAATAAATGACT 58.434 37.500 0.00 0.00 0.00 3.41
2913 5759 5.890424 TCCTTCGTCCCAAAATAAATGAC 57.110 39.130 0.00 0.00 0.00 3.06
2914 5760 6.007703 ACTTCCTTCGTCCCAAAATAAATGA 58.992 36.000 0.00 0.00 0.00 2.57
2915 5761 6.267496 ACTTCCTTCGTCCCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
2916 5762 9.862149 ATATACTTCCTTCGTCCCAAAATAAAT 57.138 29.630 0.00 0.00 0.00 1.40
2917 5763 9.333724 GATATACTTCCTTCGTCCCAAAATAAA 57.666 33.333 0.00 0.00 0.00 1.40
2918 5764 8.487848 TGATATACTTCCTTCGTCCCAAAATAA 58.512 33.333 0.00 0.00 0.00 1.40
2919 5765 8.025270 TGATATACTTCCTTCGTCCCAAAATA 57.975 34.615 0.00 0.00 0.00 1.40
2920 5766 6.895782 TGATATACTTCCTTCGTCCCAAAAT 58.104 36.000 0.00 0.00 0.00 1.82
2921 5767 6.302535 TGATATACTTCCTTCGTCCCAAAA 57.697 37.500 0.00 0.00 0.00 2.44
2922 5768 5.943349 TGATATACTTCCTTCGTCCCAAA 57.057 39.130 0.00 0.00 0.00 3.28
2923 5769 5.943349 TTGATATACTTCCTTCGTCCCAA 57.057 39.130 0.00 0.00 0.00 4.12
2924 5770 6.494666 AATTGATATACTTCCTTCGTCCCA 57.505 37.500 0.00 0.00 0.00 4.37
2925 5771 8.897872 TTAAATTGATATACTTCCTTCGTCCC 57.102 34.615 0.00 0.00 0.00 4.46
2941 5787 9.651913 ATTAGCAAACACGGATTTTAAATTGAT 57.348 25.926 0.00 0.00 0.00 2.57
2942 5788 8.920665 CATTAGCAAACACGGATTTTAAATTGA 58.079 29.630 0.00 0.00 0.00 2.57
2943 5789 8.920665 TCATTAGCAAACACGGATTTTAAATTG 58.079 29.630 0.00 0.00 0.00 2.32
2944 5790 9.651913 ATCATTAGCAAACACGGATTTTAAATT 57.348 25.926 0.00 0.00 0.00 1.82
2945 5791 9.301153 GATCATTAGCAAACACGGATTTTAAAT 57.699 29.630 0.00 0.00 0.00 1.40
2997 5843 2.097142 GTGCTCTGCAATGAATGGACTC 59.903 50.000 0.00 0.00 41.47 3.36
3055 5901 1.045911 GGGCTGAGGAGTCGAGGAAT 61.046 60.000 0.00 0.00 0.00 3.01
3056 5902 1.682684 GGGCTGAGGAGTCGAGGAA 60.683 63.158 0.00 0.00 0.00 3.36
3083 5929 5.351465 CAGGATTTTTACGAGAAGCTAGCAA 59.649 40.000 18.83 0.00 0.00 3.91
3131 5977 4.892433 AGCGCTAATGATTGAGAAGCTAT 58.108 39.130 8.99 0.00 0.00 2.97
3204 6050 1.481772 GCTGCAAGACCATCTCTCTCT 59.518 52.381 0.00 0.00 34.07 3.10
3205 6051 1.473080 GGCTGCAAGACCATCTCTCTC 60.473 57.143 0.50 0.00 33.95 3.20
3403 6249 1.210967 AGTCGTGGAGTTGGGAAAACA 59.789 47.619 0.00 0.00 0.00 2.83
3581 6429 1.602311 CTCCAGCTTGTTCACAGCTT 58.398 50.000 0.00 0.00 36.69 3.74
3583 6431 0.250467 TCCTCCAGCTTGTTCACAGC 60.250 55.000 0.00 0.00 0.00 4.40
3585 6433 0.249868 CGTCCTCCAGCTTGTTCACA 60.250 55.000 0.00 0.00 0.00 3.58
3587 6435 0.756294 TTCGTCCTCCAGCTTGTTCA 59.244 50.000 0.00 0.00 0.00 3.18
3596 6444 2.592993 CCTTGGCCTTCGTCCTCCA 61.593 63.158 3.32 0.00 0.00 3.86
3608 6456 4.299796 TCACCCTTGGGCCTTGGC 62.300 66.667 4.53 2.49 0.00 4.52
3609 6457 2.283173 GTCACCCTTGGGCCTTGG 60.283 66.667 4.53 6.75 0.00 3.61
3610 6458 2.672996 CGTCACCCTTGGGCCTTG 60.673 66.667 4.53 0.00 0.00 3.61
3611 6459 2.002018 TTTCGTCACCCTTGGGCCTT 62.002 55.000 4.53 0.00 0.00 4.35
3612 6460 2.002018 TTTTCGTCACCCTTGGGCCT 62.002 55.000 4.53 0.00 0.00 5.19
3613 6461 1.110518 TTTTTCGTCACCCTTGGGCC 61.111 55.000 5.46 0.00 0.00 5.80
3614 6462 0.966179 ATTTTTCGTCACCCTTGGGC 59.034 50.000 5.46 0.00 0.00 5.36
3615 6463 2.235016 TCATTTTTCGTCACCCTTGGG 58.765 47.619 3.77 3.77 0.00 4.12
3618 6466 6.405278 AAAAGATCATTTTTCGTCACCCTT 57.595 33.333 0.00 0.00 0.00 3.95
3651 6499 5.061179 GCCCGCCTAATCTTCAGTTATTAA 58.939 41.667 0.00 0.00 0.00 1.40
3652 6500 4.504340 GGCCCGCCTAATCTTCAGTTATTA 60.504 45.833 0.00 0.00 0.00 0.98
3653 6501 3.477530 GCCCGCCTAATCTTCAGTTATT 58.522 45.455 0.00 0.00 0.00 1.40
3654 6502 2.224548 GGCCCGCCTAATCTTCAGTTAT 60.225 50.000 0.00 0.00 0.00 1.89
3685 6535 1.583556 TCAGGCAAGGCAGGATTCTA 58.416 50.000 0.00 0.00 0.00 2.10
3686 6536 0.924823 ATCAGGCAAGGCAGGATTCT 59.075 50.000 0.00 0.00 0.00 2.40
3687 6537 2.105477 TCTATCAGGCAAGGCAGGATTC 59.895 50.000 6.22 0.00 0.00 2.52
3688 6538 2.130193 TCTATCAGGCAAGGCAGGATT 58.870 47.619 6.22 0.00 0.00 3.01
3689 6539 1.419387 GTCTATCAGGCAAGGCAGGAT 59.581 52.381 0.00 1.64 0.00 3.24
3690 6540 0.833287 GTCTATCAGGCAAGGCAGGA 59.167 55.000 0.00 0.00 0.00 3.86
3696 6546 7.066163 TGACAACAAATATGTCTATCAGGCAAG 59.934 37.037 8.01 0.00 45.81 4.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.