Multiple sequence alignment - TraesCS2D01G126100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G126100 chr2D 100.000 5712 0 0 1 5712 73326728 73321017 0.000000e+00 10549.0
1 TraesCS2D01G126100 chr2D 90.153 457 44 1 3814 4269 73207287 73206831 1.370000e-165 593.0
2 TraesCS2D01G126100 chr2D 80.630 413 73 6 2828 3235 179692148 179691738 4.300000e-81 313.0
3 TraesCS2D01G126100 chr2B 95.812 2292 82 5 2722 5007 110854026 110856309 0.000000e+00 3688.0
4 TraesCS2D01G126100 chr2B 96.540 1792 56 2 836 2621 110852196 110853987 0.000000e+00 2961.0
5 TraesCS2D01G126100 chr2B 95.479 376 15 1 5339 5712 789688427 789688802 2.950000e-167 599.0
6 TraesCS2D01G126100 chr2B 87.449 494 56 3 3814 4306 110796198 110795710 1.070000e-156 564.0
7 TraesCS2D01G126100 chr2B 80.872 413 74 5 2828 3236 236527267 236526856 2.570000e-83 320.0
8 TraesCS2D01G126100 chr2B 94.175 206 10 2 452 655 110851999 110852204 4.300000e-81 313.0
9 TraesCS2D01G126100 chr2B 91.026 156 7 1 5086 5241 789687980 789688128 2.700000e-48 204.0
10 TraesCS2D01G126100 chr2B 95.238 126 6 0 4872 4997 110859348 110859473 3.490000e-47 200.0
11 TraesCS2D01G126100 chr2A 95.516 2297 92 6 2714 4999 72693303 72695599 0.000000e+00 3661.0
12 TraesCS2D01G126100 chr2A 96.920 1786 55 0 836 2621 72691481 72693266 0.000000e+00 2994.0
13 TraesCS2D01G126100 chr2A 88.986 345 37 1 3817 4160 72513246 72512902 5.290000e-115 425.0
14 TraesCS2D01G126100 chr2A 92.045 264 16 5 393 655 72691230 72691489 3.250000e-97 366.0
15 TraesCS2D01G126100 chr2A 100.000 181 0 0 656 836 31697496 31697316 9.170000e-88 335.0
16 TraesCS2D01G126100 chr2A 80.825 412 74 5 2828 3235 194130008 194129598 9.240000e-83 318.0
17 TraesCS2D01G126100 chr2A 94.444 90 4 1 308 396 72690903 72690992 2.780000e-28 137.0
18 TraesCS2D01G126100 chr2A 97.403 77 2 0 5008 5084 72696227 72696303 1.290000e-26 132.0
19 TraesCS2D01G126100 chr2A 94.545 55 2 1 5087 5140 48668207 48668153 3.670000e-12 84.2
20 TraesCS2D01G126100 chr7A 94.574 645 15 4 5087 5712 195095508 195096151 0.000000e+00 979.0
21 TraesCS2D01G126100 chr7A 87.500 432 51 3 2823 3252 484595329 484595759 3.980000e-136 496.0
22 TraesCS2D01G126100 chr7A 77.116 756 150 15 1868 2616 484594444 484595183 3.180000e-112 416.0
23 TraesCS2D01G126100 chr7A 100.000 181 0 0 656 836 714589416 714589236 9.170000e-88 335.0
24 TraesCS2D01G126100 chr7A 97.222 180 5 0 656 835 709635313 709635492 7.190000e-79 305.0
25 TraesCS2D01G126100 chr7A 82.230 287 46 5 1246 1528 14193682 14193397 5.720000e-60 243.0
26 TraesCS2D01G126100 chr7B 87.529 433 49 5 2823 3252 451353793 451354223 3.980000e-136 496.0
27 TraesCS2D01G126100 chr7B 76.842 760 152 17 1868 2620 451352907 451353649 1.920000e-109 407.0
28 TraesCS2D01G126100 chr7B 98.901 182 2 0 656 837 154162649 154162468 5.520000e-85 326.0
29 TraesCS2D01G126100 chr7B 79.825 342 65 4 3824 4163 451354684 451355023 4.420000e-61 246.0
30 TraesCS2D01G126100 chr7D 87.298 433 50 5 2823 3252 434148230 434148660 1.850000e-134 490.0
31 TraesCS2D01G126100 chr7D 77.135 761 148 18 1868 2620 434147341 434148083 8.850000e-113 418.0
32 TraesCS2D01G126100 chr7D 81.533 287 48 5 1246 1528 14884774 14884489 1.240000e-56 231.0
33 TraesCS2D01G126100 chr3D 100.000 180 0 0 656 835 470486217 470486038 3.300000e-87 333.0
34 TraesCS2D01G126100 chr6B 98.889 180 2 0 656 835 6878489 6878310 7.140000e-84 322.0
35 TraesCS2D01G126100 chr6B 98.370 184 2 1 655 838 684219411 684219229 7.140000e-84 322.0
36 TraesCS2D01G126100 chr6B 87.129 101 12 1 1 101 561009587 561009488 4.680000e-21 113.0
37 TraesCS2D01G126100 chr4B 97.814 183 4 0 655 837 617203787 617203605 3.320000e-82 316.0
38 TraesCS2D01G126100 chrUn 81.313 396 65 9 2829 3218 5436078 5435686 4.300000e-81 313.0
39 TraesCS2D01G126100 chr1B 97.253 182 5 0 656 837 661131199 661131018 5.560000e-80 309.0
40 TraesCS2D01G126100 chr6A 87.692 65 6 2 5086 5149 571936276 571936213 2.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G126100 chr2D 73321017 73326728 5711 True 10549.0 10549 100.000000 1 5712 1 chr2D.!!$R2 5711
1 TraesCS2D01G126100 chr2B 110851999 110859473 7474 False 1790.5 3688 95.441250 452 5007 4 chr2B.!!$F1 4555
2 TraesCS2D01G126100 chr2B 789687980 789688802 822 False 401.5 599 93.252500 5086 5712 2 chr2B.!!$F2 626
3 TraesCS2D01G126100 chr2A 72690903 72696303 5400 False 1458.0 3661 95.265600 308 5084 5 chr2A.!!$F1 4776
4 TraesCS2D01G126100 chr7A 195095508 195096151 643 False 979.0 979 94.574000 5087 5712 1 chr7A.!!$F1 625
5 TraesCS2D01G126100 chr7A 484594444 484595759 1315 False 456.0 496 82.308000 1868 3252 2 chr7A.!!$F3 1384
6 TraesCS2D01G126100 chr7B 451352907 451355023 2116 False 383.0 496 81.398667 1868 4163 3 chr7B.!!$F1 2295
7 TraesCS2D01G126100 chr7D 434147341 434148660 1319 False 454.0 490 82.216500 1868 3252 2 chr7D.!!$F1 1384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 1042 0.036765 GCCACGGTGTCATCCTGTAA 60.037 55.000 7.45 0.0 0.00 2.41 F
968 1216 0.039165 CGGGTGCAAGAAAGAAAGCC 60.039 55.000 0.00 0.0 0.00 4.35 F
2134 2385 1.842562 CCAACACCATCCTCTCCATCT 59.157 52.381 0.00 0.0 0.00 2.90 F
2711 2965 2.878406 GCACTTTGCCTAGTTGTTCTCA 59.122 45.455 0.00 0.0 37.42 3.27 F
3322 3582 1.359833 CACGCAAAAGCTCAAGGCA 59.640 52.632 0.00 0.0 44.79 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 2963 0.798159 GATGCATGCGTGACAAGTGA 59.202 50.0 19.18 0.0 0.00 3.41 R
2860 3120 0.872021 GCTTCTCCCGCGACATGTAG 60.872 60.0 8.23 0.0 0.00 2.74 R
3127 3387 0.237235 GCATGTTGCCGTCGAAGAAA 59.763 50.0 0.00 0.0 35.96 2.52 R
4245 4516 0.316442 CGCGCTTATGCCTGTCATTG 60.316 55.0 5.56 0.0 36.63 2.82 R
5191 7468 0.324830 AGGGAACGAGAGAGGGGAAG 60.325 60.0 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.991972 CCCGATTTTTAGTGGGGGT 57.008 52.632 0.00 0.00 38.03 4.95
37 38 1.470051 CCCGATTTTTAGTGGGGGTG 58.530 55.000 0.00 0.00 38.03 4.61
38 39 1.470051 CCGATTTTTAGTGGGGGTGG 58.530 55.000 0.00 0.00 0.00 4.61
39 40 1.470051 CGATTTTTAGTGGGGGTGGG 58.530 55.000 0.00 0.00 0.00 4.61
40 41 1.191535 GATTTTTAGTGGGGGTGGGC 58.808 55.000 0.00 0.00 0.00 5.36
41 42 0.252513 ATTTTTAGTGGGGGTGGGCC 60.253 55.000 0.00 0.00 0.00 5.80
51 52 4.143301 GGTGGGCCCCTCAATCCC 62.143 72.222 22.27 3.64 40.47 3.85
52 53 4.143301 GTGGGCCCCTCAATCCCC 62.143 72.222 22.27 0.00 39.30 4.81
55 56 3.029981 GGCCCCTCAATCCCCCTT 61.030 66.667 0.00 0.00 0.00 3.95
56 57 1.699930 GGCCCCTCAATCCCCCTTA 60.700 63.158 0.00 0.00 0.00 2.69
57 58 1.293683 GGCCCCTCAATCCCCCTTAA 61.294 60.000 0.00 0.00 0.00 1.85
58 59 0.860457 GCCCCTCAATCCCCCTTAAT 59.140 55.000 0.00 0.00 0.00 1.40
59 60 1.203063 GCCCCTCAATCCCCCTTAATC 60.203 57.143 0.00 0.00 0.00 1.75
60 61 1.429299 CCCCTCAATCCCCCTTAATCC 59.571 57.143 0.00 0.00 0.00 3.01
61 62 2.143602 CCCTCAATCCCCCTTAATCCA 58.856 52.381 0.00 0.00 0.00 3.41
62 63 2.517980 CCCTCAATCCCCCTTAATCCAA 59.482 50.000 0.00 0.00 0.00 3.53
63 64 3.142787 CCCTCAATCCCCCTTAATCCAAT 59.857 47.826 0.00 0.00 0.00 3.16
64 65 4.411013 CCTCAATCCCCCTTAATCCAATC 58.589 47.826 0.00 0.00 0.00 2.67
65 66 4.411013 CTCAATCCCCCTTAATCCAATCC 58.589 47.826 0.00 0.00 0.00 3.01
66 67 4.061657 TCAATCCCCCTTAATCCAATCCT 58.938 43.478 0.00 0.00 0.00 3.24
67 68 4.140947 TCAATCCCCCTTAATCCAATCCTG 60.141 45.833 0.00 0.00 0.00 3.86
68 69 3.159065 TCCCCCTTAATCCAATCCTGA 57.841 47.619 0.00 0.00 0.00 3.86
69 70 3.056080 TCCCCCTTAATCCAATCCTGAG 58.944 50.000 0.00 0.00 0.00 3.35
70 71 2.785857 CCCCCTTAATCCAATCCTGAGT 59.214 50.000 0.00 0.00 0.00 3.41
71 72 3.435601 CCCCCTTAATCCAATCCTGAGTG 60.436 52.174 0.00 0.00 0.00 3.51
72 73 3.203040 CCCCTTAATCCAATCCTGAGTGT 59.797 47.826 0.00 0.00 0.00 3.55
73 74 4.455606 CCCTTAATCCAATCCTGAGTGTC 58.544 47.826 0.00 0.00 0.00 3.67
74 75 4.455606 CCTTAATCCAATCCTGAGTGTCC 58.544 47.826 0.00 0.00 0.00 4.02
75 76 4.080356 CCTTAATCCAATCCTGAGTGTCCA 60.080 45.833 0.00 0.00 0.00 4.02
76 77 3.356529 AATCCAATCCTGAGTGTCCAC 57.643 47.619 0.00 0.00 0.00 4.02
77 78 0.608130 TCCAATCCTGAGTGTCCACG 59.392 55.000 0.00 0.00 36.20 4.94
78 79 0.321671 CCAATCCTGAGTGTCCACGT 59.678 55.000 0.00 0.00 36.20 4.49
79 80 1.270839 CCAATCCTGAGTGTCCACGTT 60.271 52.381 0.00 0.00 36.20 3.99
80 81 1.800586 CAATCCTGAGTGTCCACGTTG 59.199 52.381 0.00 0.00 36.20 4.10
81 82 0.320771 ATCCTGAGTGTCCACGTTGC 60.321 55.000 0.00 0.00 36.20 4.17
82 83 1.227527 CCTGAGTGTCCACGTTGCA 60.228 57.895 0.00 0.00 36.20 4.08
83 84 1.498865 CCTGAGTGTCCACGTTGCAC 61.499 60.000 5.95 5.95 36.20 4.57
84 85 0.809636 CTGAGTGTCCACGTTGCACA 60.810 55.000 13.91 2.50 35.75 4.57
85 86 0.809636 TGAGTGTCCACGTTGCACAG 60.810 55.000 13.91 0.00 35.75 3.66
86 87 0.810031 GAGTGTCCACGTTGCACAGT 60.810 55.000 13.91 7.31 35.75 3.55
87 88 0.462375 AGTGTCCACGTTGCACAGTA 59.538 50.000 13.91 0.00 35.75 2.74
88 89 1.070134 AGTGTCCACGTTGCACAGTAT 59.930 47.619 13.91 0.00 35.75 2.12
89 90 2.297880 AGTGTCCACGTTGCACAGTATA 59.702 45.455 13.91 0.00 35.75 1.47
90 91 3.056107 AGTGTCCACGTTGCACAGTATAT 60.056 43.478 13.91 0.00 35.75 0.86
91 92 4.158949 AGTGTCCACGTTGCACAGTATATA 59.841 41.667 13.91 0.00 35.75 0.86
92 93 4.865925 GTGTCCACGTTGCACAGTATATAA 59.134 41.667 8.48 0.00 33.70 0.98
93 94 5.349270 GTGTCCACGTTGCACAGTATATAAA 59.651 40.000 8.48 0.00 33.70 1.40
94 95 5.932883 TGTCCACGTTGCACAGTATATAAAA 59.067 36.000 0.00 0.00 0.00 1.52
95 96 6.596106 TGTCCACGTTGCACAGTATATAAAAT 59.404 34.615 0.00 0.00 0.00 1.82
96 97 7.764901 TGTCCACGTTGCACAGTATATAAAATA 59.235 33.333 0.00 0.00 0.00 1.40
97 98 8.060090 GTCCACGTTGCACAGTATATAAAATAC 58.940 37.037 0.00 0.00 0.00 1.89
98 99 7.043258 TCCACGTTGCACAGTATATAAAATACG 60.043 37.037 0.00 0.00 0.00 3.06
99 100 7.254185 CCACGTTGCACAGTATATAAAATACGT 60.254 37.037 0.00 0.00 37.77 3.57
100 101 8.744923 CACGTTGCACAGTATATAAAATACGTA 58.255 33.333 0.00 0.00 35.84 3.57
101 102 8.961092 ACGTTGCACAGTATATAAAATACGTAG 58.039 33.333 0.08 0.00 35.84 3.51
104 105 9.806203 TTGCACAGTATATAAAATACGTAGTGT 57.194 29.630 0.08 0.00 45.73 3.55
105 106 9.240159 TGCACAGTATATAAAATACGTAGTGTG 57.760 33.333 11.12 11.12 45.73 3.82
107 108 8.414923 CACAGTATATAAAATACGTAGTGTGCG 58.585 37.037 0.08 0.00 45.73 5.34
108 109 7.592533 ACAGTATATAAAATACGTAGTGTGCGG 59.407 37.037 0.08 0.00 45.73 5.69
109 110 5.834239 ATATAAAATACGTAGTGTGCGGC 57.166 39.130 0.08 0.00 45.73 6.53
110 111 0.717224 AAAATACGTAGTGTGCGGCG 59.283 50.000 0.51 0.51 45.73 6.46
111 112 1.079875 AAATACGTAGTGTGCGGCGG 61.080 55.000 9.78 0.00 45.73 6.13
112 113 4.781959 TACGTAGTGTGCGGCGGC 62.782 66.667 9.78 9.68 45.73 6.53
129 130 4.596311 CACACCGTGCTATGCTCA 57.404 55.556 0.00 0.00 0.00 4.26
130 131 3.070076 CACACCGTGCTATGCTCAT 57.930 52.632 0.00 0.00 0.00 2.90
131 132 1.372582 CACACCGTGCTATGCTCATT 58.627 50.000 0.00 0.00 0.00 2.57
132 133 1.063027 CACACCGTGCTATGCTCATTG 59.937 52.381 0.00 0.00 0.00 2.82
133 134 1.066215 ACACCGTGCTATGCTCATTGA 60.066 47.619 0.00 0.00 0.00 2.57
134 135 2.216046 CACCGTGCTATGCTCATTGAT 58.784 47.619 0.00 0.00 0.00 2.57
135 136 2.615447 CACCGTGCTATGCTCATTGATT 59.385 45.455 0.00 0.00 0.00 2.57
136 137 2.615447 ACCGTGCTATGCTCATTGATTG 59.385 45.455 0.00 0.00 0.00 2.67
137 138 2.031420 CCGTGCTATGCTCATTGATTGG 60.031 50.000 0.00 0.00 0.00 3.16
138 139 2.603892 CGTGCTATGCTCATTGATTGGC 60.604 50.000 0.00 0.00 0.00 4.52
139 140 2.359848 GTGCTATGCTCATTGATTGGCA 59.640 45.455 2.04 2.04 36.42 4.92
140 141 3.005472 GTGCTATGCTCATTGATTGGCAT 59.995 43.478 14.13 14.13 41.81 4.40
141 142 3.254903 TGCTATGCTCATTGATTGGCATC 59.745 43.478 13.33 4.02 40.47 3.91
142 143 3.506455 GCTATGCTCATTGATTGGCATCT 59.494 43.478 13.33 0.00 40.47 2.90
143 144 4.022242 GCTATGCTCATTGATTGGCATCTT 60.022 41.667 13.33 0.00 40.47 2.40
144 145 5.182570 GCTATGCTCATTGATTGGCATCTTA 59.817 40.000 13.33 0.00 40.47 2.10
145 146 6.294342 GCTATGCTCATTGATTGGCATCTTAA 60.294 38.462 13.33 0.00 40.47 1.85
146 147 6.665992 ATGCTCATTGATTGGCATCTTAAT 57.334 33.333 6.15 0.00 37.56 1.40
147 148 7.770366 ATGCTCATTGATTGGCATCTTAATA 57.230 32.000 6.15 0.00 37.56 0.98
148 149 7.585579 TGCTCATTGATTGGCATCTTAATAA 57.414 32.000 0.00 0.00 29.90 1.40
149 150 8.009622 TGCTCATTGATTGGCATCTTAATAAA 57.990 30.769 0.00 0.00 29.90 1.40
150 151 8.644216 TGCTCATTGATTGGCATCTTAATAAAT 58.356 29.630 0.00 0.00 29.90 1.40
200 201 8.824159 ATCATGAGAATACAGAAAACTATCCG 57.176 34.615 0.09 0.00 0.00 4.18
201 202 6.701841 TCATGAGAATACAGAAAACTATCCGC 59.298 38.462 0.00 0.00 0.00 5.54
202 203 5.357257 TGAGAATACAGAAAACTATCCGCC 58.643 41.667 0.00 0.00 0.00 6.13
203 204 5.128827 TGAGAATACAGAAAACTATCCGCCT 59.871 40.000 0.00 0.00 0.00 5.52
204 205 6.322969 TGAGAATACAGAAAACTATCCGCCTA 59.677 38.462 0.00 0.00 0.00 3.93
205 206 7.120923 AGAATACAGAAAACTATCCGCCTAA 57.879 36.000 0.00 0.00 0.00 2.69
206 207 7.736893 AGAATACAGAAAACTATCCGCCTAAT 58.263 34.615 0.00 0.00 0.00 1.73
207 208 8.211629 AGAATACAGAAAACTATCCGCCTAATT 58.788 33.333 0.00 0.00 0.00 1.40
208 209 8.747538 AATACAGAAAACTATCCGCCTAATTT 57.252 30.769 0.00 0.00 0.00 1.82
209 210 9.841295 AATACAGAAAACTATCCGCCTAATTTA 57.159 29.630 0.00 0.00 0.00 1.40
210 211 7.787725 ACAGAAAACTATCCGCCTAATTTAG 57.212 36.000 0.00 0.00 0.00 1.85
211 212 6.260271 ACAGAAAACTATCCGCCTAATTTAGC 59.740 38.462 0.00 0.00 0.00 3.09
212 213 6.260050 CAGAAAACTATCCGCCTAATTTAGCA 59.740 38.462 0.00 0.00 0.00 3.49
213 214 6.826741 AGAAAACTATCCGCCTAATTTAGCAA 59.173 34.615 0.00 0.00 0.00 3.91
214 215 7.338449 AGAAAACTATCCGCCTAATTTAGCAAA 59.662 33.333 0.00 0.00 0.00 3.68
215 216 7.399245 AAACTATCCGCCTAATTTAGCAAAA 57.601 32.000 0.00 0.00 0.00 2.44
216 217 7.399245 AACTATCCGCCTAATTTAGCAAAAA 57.601 32.000 0.00 0.00 0.00 1.94
217 218 6.792326 ACTATCCGCCTAATTTAGCAAAAAC 58.208 36.000 0.00 0.00 0.00 2.43
218 219 5.652994 ATCCGCCTAATTTAGCAAAAACA 57.347 34.783 0.00 0.00 0.00 2.83
219 220 4.800784 TCCGCCTAATTTAGCAAAAACAC 58.199 39.130 0.00 0.00 0.00 3.32
220 221 4.521256 TCCGCCTAATTTAGCAAAAACACT 59.479 37.500 0.00 0.00 0.00 3.55
221 222 5.706369 TCCGCCTAATTTAGCAAAAACACTA 59.294 36.000 0.00 0.00 0.00 2.74
222 223 5.798434 CCGCCTAATTTAGCAAAAACACTAC 59.202 40.000 0.00 0.00 0.00 2.73
223 224 6.349033 CCGCCTAATTTAGCAAAAACACTACT 60.349 38.462 0.00 0.00 0.00 2.57
224 225 6.523201 CGCCTAATTTAGCAAAAACACTACTG 59.477 38.462 0.00 0.00 0.00 2.74
225 226 6.806739 GCCTAATTTAGCAAAAACACTACTGG 59.193 38.462 0.00 0.00 0.00 4.00
226 227 7.308951 GCCTAATTTAGCAAAAACACTACTGGA 60.309 37.037 0.00 0.00 0.00 3.86
227 228 8.739972 CCTAATTTAGCAAAAACACTACTGGAT 58.260 33.333 0.00 0.00 0.00 3.41
230 231 9.515226 AATTTAGCAAAAACACTACTGGATAGA 57.485 29.630 0.00 0.00 34.65 1.98
231 232 8.911918 TTTAGCAAAAACACTACTGGATAGAA 57.088 30.769 0.00 0.00 34.65 2.10
232 233 6.803154 AGCAAAAACACTACTGGATAGAAC 57.197 37.500 0.00 0.00 34.65 3.01
233 234 6.534634 AGCAAAAACACTACTGGATAGAACT 58.465 36.000 0.00 0.00 34.65 3.01
234 235 6.428159 AGCAAAAACACTACTGGATAGAACTG 59.572 38.462 0.00 0.00 34.65 3.16
235 236 6.348540 GCAAAAACACTACTGGATAGAACTGG 60.349 42.308 0.00 0.00 34.65 4.00
236 237 6.681729 AAAACACTACTGGATAGAACTGGA 57.318 37.500 0.00 0.00 34.65 3.86
237 238 5.923733 AACACTACTGGATAGAACTGGAG 57.076 43.478 0.00 0.00 34.65 3.86
238 239 5.194473 ACACTACTGGATAGAACTGGAGA 57.806 43.478 0.00 0.00 34.65 3.71
239 240 4.951094 ACACTACTGGATAGAACTGGAGAC 59.049 45.833 0.00 0.00 34.65 3.36
240 241 4.950475 CACTACTGGATAGAACTGGAGACA 59.050 45.833 0.00 0.00 34.65 3.41
241 242 5.596361 CACTACTGGATAGAACTGGAGACAT 59.404 44.000 0.00 0.00 35.50 3.06
242 243 5.830991 ACTACTGGATAGAACTGGAGACATC 59.169 44.000 0.00 0.00 35.50 3.06
243 244 4.614475 ACTGGATAGAACTGGAGACATCA 58.386 43.478 0.00 0.00 41.51 3.07
244 245 5.026121 ACTGGATAGAACTGGAGACATCAA 58.974 41.667 0.00 0.00 41.51 2.57
245 246 5.128499 ACTGGATAGAACTGGAGACATCAAG 59.872 44.000 0.00 0.00 41.51 3.02
246 247 5.272402 TGGATAGAACTGGAGACATCAAGA 58.728 41.667 0.00 0.00 41.51 3.02
247 248 5.721480 TGGATAGAACTGGAGACATCAAGAA 59.279 40.000 0.00 0.00 41.51 2.52
248 249 6.045955 GGATAGAACTGGAGACATCAAGAAC 58.954 44.000 0.00 0.00 41.51 3.01
249 250 4.963318 AGAACTGGAGACATCAAGAACA 57.037 40.909 0.00 0.00 41.51 3.18
250 251 5.495926 AGAACTGGAGACATCAAGAACAT 57.504 39.130 0.00 0.00 41.51 2.71
251 252 5.243981 AGAACTGGAGACATCAAGAACATG 58.756 41.667 0.00 0.00 41.51 3.21
252 253 4.897509 ACTGGAGACATCAAGAACATGA 57.102 40.909 0.00 0.00 41.51 3.07
253 254 4.829968 ACTGGAGACATCAAGAACATGAG 58.170 43.478 0.00 0.00 41.51 2.90
254 255 4.529769 ACTGGAGACATCAAGAACATGAGA 59.470 41.667 0.00 0.00 41.51 3.27
255 256 5.082251 TGGAGACATCAAGAACATGAGAG 57.918 43.478 0.00 0.00 33.40 3.20
256 257 4.774200 TGGAGACATCAAGAACATGAGAGA 59.226 41.667 0.00 0.00 33.40 3.10
257 258 5.246883 TGGAGACATCAAGAACATGAGAGAA 59.753 40.000 0.00 0.00 33.40 2.87
258 259 6.070366 TGGAGACATCAAGAACATGAGAGAAT 60.070 38.462 0.00 0.00 33.40 2.40
259 260 7.124750 TGGAGACATCAAGAACATGAGAGAATA 59.875 37.037 0.00 0.00 33.40 1.75
260 261 7.984050 GGAGACATCAAGAACATGAGAGAATAA 59.016 37.037 0.00 0.00 31.76 1.40
261 262 9.545105 GAGACATCAAGAACATGAGAGAATAAT 57.455 33.333 0.00 0.00 31.76 1.28
293 294 6.968263 TTGATAACAACCCTCAACATTTGA 57.032 33.333 0.00 0.00 38.17 2.69
294 295 6.325919 TGATAACAACCCTCAACATTTGAC 57.674 37.500 0.00 0.00 35.46 3.18
295 296 5.242838 TGATAACAACCCTCAACATTTGACC 59.757 40.000 0.00 0.00 35.46 4.02
296 297 3.312736 ACAACCCTCAACATTTGACCT 57.687 42.857 0.00 0.00 35.46 3.85
297 298 4.447138 ACAACCCTCAACATTTGACCTA 57.553 40.909 0.00 0.00 35.46 3.08
298 299 4.798882 ACAACCCTCAACATTTGACCTAA 58.201 39.130 0.00 0.00 35.46 2.69
299 300 5.205056 ACAACCCTCAACATTTGACCTAAA 58.795 37.500 0.00 0.00 35.46 1.85
300 301 5.068591 ACAACCCTCAACATTTGACCTAAAC 59.931 40.000 0.00 0.00 35.46 2.01
301 302 4.798882 ACCCTCAACATTTGACCTAAACA 58.201 39.130 0.00 0.00 35.46 2.83
302 303 5.205056 ACCCTCAACATTTGACCTAAACAA 58.795 37.500 0.00 0.00 35.46 2.83
303 304 5.659079 ACCCTCAACATTTGACCTAAACAAA 59.341 36.000 0.00 0.00 40.62 2.83
304 305 6.326323 ACCCTCAACATTTGACCTAAACAAAT 59.674 34.615 0.00 0.00 45.05 2.32
311 312 6.739331 ATTTGACCTAAACAAATGGTTGGA 57.261 33.333 0.00 0.00 43.36 3.53
312 313 5.782893 TTGACCTAAACAAATGGTTGGAG 57.217 39.130 0.00 0.00 40.35 3.86
313 314 4.148838 TGACCTAAACAAATGGTTGGAGG 58.851 43.478 0.00 0.00 43.93 4.30
314 315 4.141135 TGACCTAAACAAATGGTTGGAGGA 60.141 41.667 8.31 0.00 42.26 3.71
315 316 4.407365 ACCTAAACAAATGGTTGGAGGAG 58.593 43.478 8.31 0.00 42.26 3.69
316 317 3.763897 CCTAAACAAATGGTTGGAGGAGG 59.236 47.826 0.00 0.00 42.26 4.30
317 318 3.611025 AAACAAATGGTTGGAGGAGGA 57.389 42.857 0.00 0.00 40.35 3.71
326 327 0.698818 TTGGAGGAGGAAGAAAGCCC 59.301 55.000 0.00 0.00 0.00 5.19
396 398 4.222124 AGTGGCCAGAAAATCGACTTAT 57.778 40.909 5.11 0.00 0.00 1.73
397 399 4.589908 AGTGGCCAGAAAATCGACTTATT 58.410 39.130 5.11 0.00 0.00 1.40
439 682 7.596749 AGACTTACATAAAATGTCACTTCCG 57.403 36.000 0.00 0.00 43.67 4.30
443 686 9.832445 ACTTACATAAAATGTCACTTCCGATAT 57.168 29.630 0.00 0.00 43.67 1.63
657 902 4.148825 CCGCCTCTTCCCACCGAG 62.149 72.222 0.00 0.00 0.00 4.63
658 903 4.821589 CGCCTCTTCCCACCGAGC 62.822 72.222 0.00 0.00 0.00 5.03
659 904 3.706373 GCCTCTTCCCACCGAGCA 61.706 66.667 0.00 0.00 0.00 4.26
660 905 3.068881 CCTCTTCCCACCGAGCAA 58.931 61.111 0.00 0.00 0.00 3.91
661 906 1.604378 CCTCTTCCCACCGAGCAAT 59.396 57.895 0.00 0.00 0.00 3.56
662 907 0.745845 CCTCTTCCCACCGAGCAATG 60.746 60.000 0.00 0.00 0.00 2.82
663 908 1.372087 CTCTTCCCACCGAGCAATGC 61.372 60.000 0.00 0.00 0.00 3.56
664 909 1.377725 CTTCCCACCGAGCAATGCT 60.378 57.895 7.79 7.79 43.88 3.79
665 910 0.107703 CTTCCCACCGAGCAATGCTA 60.108 55.000 8.12 0.00 39.88 3.49
666 911 0.107703 TTCCCACCGAGCAATGCTAG 60.108 55.000 8.12 8.29 39.88 3.42
667 912 0.975556 TCCCACCGAGCAATGCTAGA 60.976 55.000 16.81 0.69 39.88 2.43
668 913 0.811616 CCCACCGAGCAATGCTAGAC 60.812 60.000 16.81 0.00 39.88 2.59
669 914 1.148157 CCACCGAGCAATGCTAGACG 61.148 60.000 16.81 11.99 39.88 4.18
670 915 0.458543 CACCGAGCAATGCTAGACGT 60.459 55.000 16.81 4.30 39.88 4.34
671 916 1.100510 ACCGAGCAATGCTAGACGTA 58.899 50.000 16.81 0.00 39.88 3.57
672 917 1.202268 ACCGAGCAATGCTAGACGTAC 60.202 52.381 16.81 0.00 39.88 3.67
673 918 1.113253 CGAGCAATGCTAGACGTACG 58.887 55.000 15.01 15.01 39.88 3.67
674 919 1.478137 GAGCAATGCTAGACGTACGG 58.522 55.000 21.06 2.24 39.88 4.02
675 920 0.102481 AGCAATGCTAGACGTACGGG 59.898 55.000 21.06 7.74 36.99 5.28
676 921 1.488261 GCAATGCTAGACGTACGGGC 61.488 60.000 21.06 17.10 0.00 6.13
677 922 1.065273 AATGCTAGACGTACGGGCG 59.935 57.895 21.06 6.01 37.94 6.13
679 924 1.660560 ATGCTAGACGTACGGGCGTT 61.661 55.000 21.06 0.00 45.79 4.84
680 925 1.870901 GCTAGACGTACGGGCGTTG 60.871 63.158 21.06 5.63 45.79 4.10
681 926 1.503542 CTAGACGTACGGGCGTTGT 59.496 57.895 21.06 0.00 45.79 3.32
682 927 0.726827 CTAGACGTACGGGCGTTGTA 59.273 55.000 21.06 0.00 45.79 2.41
683 928 0.446222 TAGACGTACGGGCGTTGTAC 59.554 55.000 21.06 3.96 45.79 2.90
686 931 2.506881 GTACGGGCGTTGTACGGG 60.507 66.667 1.14 0.00 42.82 5.28
687 932 3.757828 TACGGGCGTTGTACGGGG 61.758 66.667 1.14 0.00 42.82 5.73
690 935 3.789290 GGGCGTTGTACGGGGGAT 61.789 66.667 1.14 0.00 42.82 3.85
691 936 2.269883 GGCGTTGTACGGGGGATT 59.730 61.111 1.14 0.00 42.82 3.01
692 937 1.377594 GGCGTTGTACGGGGGATTT 60.378 57.895 1.14 0.00 42.82 2.17
693 938 0.107752 GGCGTTGTACGGGGGATTTA 60.108 55.000 1.14 0.00 42.82 1.40
694 939 1.009078 GCGTTGTACGGGGGATTTAC 58.991 55.000 1.14 0.00 42.82 2.01
695 940 1.675415 GCGTTGTACGGGGGATTTACA 60.675 52.381 1.14 0.00 42.82 2.41
696 941 2.273557 CGTTGTACGGGGGATTTACAG 58.726 52.381 0.00 0.00 38.08 2.74
697 942 2.635714 GTTGTACGGGGGATTTACAGG 58.364 52.381 0.00 0.00 0.00 4.00
698 943 0.542805 TGTACGGGGGATTTACAGGC 59.457 55.000 0.00 0.00 0.00 4.85
699 944 0.835276 GTACGGGGGATTTACAGGCT 59.165 55.000 0.00 0.00 0.00 4.58
700 945 1.125633 TACGGGGGATTTACAGGCTC 58.874 55.000 0.00 0.00 0.00 4.70
701 946 1.227556 CGGGGGATTTACAGGCTCG 60.228 63.158 0.00 0.00 0.00 5.03
702 947 1.912971 GGGGGATTTACAGGCTCGT 59.087 57.895 0.00 0.00 0.00 4.18
703 948 0.255033 GGGGGATTTACAGGCTCGTT 59.745 55.000 0.00 0.00 0.00 3.85
704 949 1.379527 GGGGATTTACAGGCTCGTTG 58.620 55.000 0.00 0.00 0.00 4.10
705 950 1.065709 GGGGATTTACAGGCTCGTTGA 60.066 52.381 0.00 0.00 0.00 3.18
706 951 2.007608 GGGATTTACAGGCTCGTTGAC 58.992 52.381 0.00 0.00 0.00 3.18
707 952 2.354805 GGGATTTACAGGCTCGTTGACT 60.355 50.000 0.00 0.00 0.00 3.41
712 957 3.521995 CAGGCTCGTTGACTGTGAT 57.478 52.632 5.99 0.00 46.57 3.06
713 958 1.800805 CAGGCTCGTTGACTGTGATT 58.199 50.000 5.99 0.00 46.57 2.57
714 959 1.462283 CAGGCTCGTTGACTGTGATTG 59.538 52.381 5.99 0.00 46.57 2.67
715 960 0.798776 GGCTCGTTGACTGTGATTGG 59.201 55.000 0.00 0.00 0.00 3.16
716 961 1.512926 GCTCGTTGACTGTGATTGGT 58.487 50.000 0.00 0.00 0.00 3.67
717 962 1.873591 GCTCGTTGACTGTGATTGGTT 59.126 47.619 0.00 0.00 0.00 3.67
718 963 2.349817 GCTCGTTGACTGTGATTGGTTG 60.350 50.000 0.00 0.00 0.00 3.77
719 964 2.217750 TCGTTGACTGTGATTGGTTGG 58.782 47.619 0.00 0.00 0.00 3.77
720 965 2.158885 TCGTTGACTGTGATTGGTTGGA 60.159 45.455 0.00 0.00 0.00 3.53
721 966 2.616376 CGTTGACTGTGATTGGTTGGAA 59.384 45.455 0.00 0.00 0.00 3.53
722 967 3.253188 CGTTGACTGTGATTGGTTGGAAT 59.747 43.478 0.00 0.00 0.00 3.01
723 968 4.454161 CGTTGACTGTGATTGGTTGGAATA 59.546 41.667 0.00 0.00 0.00 1.75
724 969 5.123820 CGTTGACTGTGATTGGTTGGAATAT 59.876 40.000 0.00 0.00 0.00 1.28
725 970 6.324819 GTTGACTGTGATTGGTTGGAATATG 58.675 40.000 0.00 0.00 0.00 1.78
726 971 5.814481 TGACTGTGATTGGTTGGAATATGA 58.186 37.500 0.00 0.00 0.00 2.15
727 972 6.425735 TGACTGTGATTGGTTGGAATATGAT 58.574 36.000 0.00 0.00 0.00 2.45
728 973 6.891361 TGACTGTGATTGGTTGGAATATGATT 59.109 34.615 0.00 0.00 0.00 2.57
729 974 8.052141 TGACTGTGATTGGTTGGAATATGATTA 58.948 33.333 0.00 0.00 0.00 1.75
730 975 8.821686 ACTGTGATTGGTTGGAATATGATTAA 57.178 30.769 0.00 0.00 0.00 1.40
731 976 8.906867 ACTGTGATTGGTTGGAATATGATTAAG 58.093 33.333 0.00 0.00 0.00 1.85
732 977 8.236585 TGTGATTGGTTGGAATATGATTAAGG 57.763 34.615 0.00 0.00 0.00 2.69
733 978 7.287466 TGTGATTGGTTGGAATATGATTAAGGG 59.713 37.037 0.00 0.00 0.00 3.95
734 979 6.782000 TGATTGGTTGGAATATGATTAAGGGG 59.218 38.462 0.00 0.00 0.00 4.79
735 980 5.073437 TGGTTGGAATATGATTAAGGGGG 57.927 43.478 0.00 0.00 0.00 5.40
736 981 4.734503 TGGTTGGAATATGATTAAGGGGGA 59.265 41.667 0.00 0.00 0.00 4.81
737 982 5.077564 GGTTGGAATATGATTAAGGGGGAC 58.922 45.833 0.00 0.00 0.00 4.46
738 983 4.634012 TGGAATATGATTAAGGGGGACG 57.366 45.455 0.00 0.00 0.00 4.79
739 984 3.329520 TGGAATATGATTAAGGGGGACGG 59.670 47.826 0.00 0.00 0.00 4.79
740 985 3.344515 GAATATGATTAAGGGGGACGGC 58.655 50.000 0.00 0.00 0.00 5.68
741 986 1.061546 TATGATTAAGGGGGACGGCC 58.938 55.000 0.00 0.00 0.00 6.13
752 997 3.961414 GACGGCCCCACCCTGAAA 61.961 66.667 0.00 0.00 33.26 2.69
753 998 3.501040 GACGGCCCCACCCTGAAAA 62.501 63.158 0.00 0.00 33.26 2.29
754 999 2.037208 CGGCCCCACCCTGAAAAT 59.963 61.111 0.00 0.00 33.26 1.82
755 1000 2.052104 CGGCCCCACCCTGAAAATC 61.052 63.158 0.00 0.00 33.26 2.17
756 1001 1.078347 GGCCCCACCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
757 1002 0.972471 GGCCCCACCCTGAAAATCAG 60.972 60.000 0.00 0.32 43.91 2.90
779 1024 3.157881 GGGGGAAGCAATTAGATTAGGC 58.842 50.000 0.00 0.00 0.00 3.93
780 1025 3.157881 GGGGAAGCAATTAGATTAGGCC 58.842 50.000 0.00 0.00 0.00 5.19
781 1026 3.436470 GGGGAAGCAATTAGATTAGGCCA 60.436 47.826 5.01 0.00 0.00 5.36
782 1027 3.570125 GGGAAGCAATTAGATTAGGCCAC 59.430 47.826 5.01 0.00 0.00 5.01
783 1028 3.251004 GGAAGCAATTAGATTAGGCCACG 59.749 47.826 5.01 0.00 0.00 4.94
784 1029 2.851195 AGCAATTAGATTAGGCCACGG 58.149 47.619 5.01 0.00 0.00 4.94
785 1030 2.172717 AGCAATTAGATTAGGCCACGGT 59.827 45.455 5.01 0.00 0.00 4.83
786 1031 2.290641 GCAATTAGATTAGGCCACGGTG 59.709 50.000 5.01 0.00 0.00 4.94
787 1032 3.541632 CAATTAGATTAGGCCACGGTGT 58.458 45.455 5.01 0.00 0.00 4.16
788 1033 2.973694 TTAGATTAGGCCACGGTGTC 57.026 50.000 5.01 0.00 0.00 3.67
789 1034 1.855295 TAGATTAGGCCACGGTGTCA 58.145 50.000 5.01 0.00 0.00 3.58
790 1035 1.204146 AGATTAGGCCACGGTGTCAT 58.796 50.000 5.01 0.00 0.00 3.06
791 1036 1.139058 AGATTAGGCCACGGTGTCATC 59.861 52.381 5.01 1.56 0.00 2.92
792 1037 0.180406 ATTAGGCCACGGTGTCATCC 59.820 55.000 5.01 2.99 0.00 3.51
793 1038 0.907704 TTAGGCCACGGTGTCATCCT 60.908 55.000 5.01 9.88 0.00 3.24
794 1039 1.613317 TAGGCCACGGTGTCATCCTG 61.613 60.000 5.01 0.00 0.00 3.86
795 1040 2.347490 GCCACGGTGTCATCCTGT 59.653 61.111 7.45 0.00 0.00 4.00
796 1041 1.594833 GCCACGGTGTCATCCTGTA 59.405 57.895 7.45 0.00 0.00 2.74
797 1042 0.036765 GCCACGGTGTCATCCTGTAA 60.037 55.000 7.45 0.00 0.00 2.41
798 1043 1.609580 GCCACGGTGTCATCCTGTAAA 60.610 52.381 7.45 0.00 0.00 2.01
799 1044 2.773487 CCACGGTGTCATCCTGTAAAA 58.227 47.619 7.45 0.00 0.00 1.52
800 1045 2.482721 CCACGGTGTCATCCTGTAAAAC 59.517 50.000 7.45 0.00 0.00 2.43
801 1046 3.399330 CACGGTGTCATCCTGTAAAACT 58.601 45.455 0.00 0.00 0.00 2.66
802 1047 3.813166 CACGGTGTCATCCTGTAAAACTT 59.187 43.478 0.00 0.00 0.00 2.66
803 1048 4.274950 CACGGTGTCATCCTGTAAAACTTT 59.725 41.667 0.00 0.00 0.00 2.66
804 1049 4.274950 ACGGTGTCATCCTGTAAAACTTTG 59.725 41.667 0.00 0.00 0.00 2.77
805 1050 4.274950 CGGTGTCATCCTGTAAAACTTTGT 59.725 41.667 0.00 0.00 0.00 2.83
806 1051 5.467399 CGGTGTCATCCTGTAAAACTTTGTA 59.533 40.000 0.00 0.00 0.00 2.41
807 1052 6.565247 CGGTGTCATCCTGTAAAACTTTGTAC 60.565 42.308 0.00 0.00 0.00 2.90
808 1053 6.360329 GTGTCATCCTGTAAAACTTTGTACG 58.640 40.000 0.00 0.00 0.00 3.67
809 1054 6.201425 GTGTCATCCTGTAAAACTTTGTACGA 59.799 38.462 0.00 0.00 0.00 3.43
810 1055 6.932400 TGTCATCCTGTAAAACTTTGTACGAT 59.068 34.615 0.00 0.00 0.00 3.73
811 1056 7.117236 TGTCATCCTGTAAAACTTTGTACGATC 59.883 37.037 0.00 0.00 0.00 3.69
812 1057 7.117236 GTCATCCTGTAAAACTTTGTACGATCA 59.883 37.037 0.00 0.00 0.00 2.92
813 1058 7.822334 TCATCCTGTAAAACTTTGTACGATCAT 59.178 33.333 0.00 0.00 0.00 2.45
814 1059 7.591006 TCCTGTAAAACTTTGTACGATCATC 57.409 36.000 0.00 0.00 0.00 2.92
815 1060 6.592607 TCCTGTAAAACTTTGTACGATCATCC 59.407 38.462 0.00 0.00 0.00 3.51
816 1061 6.594159 CCTGTAAAACTTTGTACGATCATCCT 59.406 38.462 0.00 0.00 0.00 3.24
817 1062 7.359262 TGTAAAACTTTGTACGATCATCCTG 57.641 36.000 0.00 0.00 0.00 3.86
818 1063 6.932400 TGTAAAACTTTGTACGATCATCCTGT 59.068 34.615 0.00 0.00 0.00 4.00
819 1064 8.089597 TGTAAAACTTTGTACGATCATCCTGTA 58.910 33.333 0.00 0.00 0.00 2.74
820 1065 6.963049 AAACTTTGTACGATCATCCTGTAC 57.037 37.500 0.00 0.00 39.08 2.90
821 1066 4.669318 ACTTTGTACGATCATCCTGTACG 58.331 43.478 0.00 0.00 40.97 3.67
822 1067 4.157289 ACTTTGTACGATCATCCTGTACGT 59.843 41.667 0.00 0.00 40.97 3.57
823 1068 3.685836 TGTACGATCATCCTGTACGTG 57.314 47.619 0.00 0.00 40.97 4.49
824 1069 3.011818 TGTACGATCATCCTGTACGTGT 58.988 45.455 0.00 0.00 40.97 4.49
825 1070 4.190772 TGTACGATCATCCTGTACGTGTA 58.809 43.478 0.00 0.00 40.97 2.90
826 1071 3.965292 ACGATCATCCTGTACGTGTAG 57.035 47.619 0.00 0.00 35.91 2.74
827 1072 3.276857 ACGATCATCCTGTACGTGTAGT 58.723 45.455 0.00 0.00 35.91 2.73
828 1073 4.445453 ACGATCATCCTGTACGTGTAGTA 58.555 43.478 0.00 0.00 35.91 1.82
829 1074 5.061853 ACGATCATCCTGTACGTGTAGTAT 58.938 41.667 0.00 0.00 37.69 2.12
830 1075 5.530171 ACGATCATCCTGTACGTGTAGTATT 59.470 40.000 0.00 0.00 37.69 1.89
831 1076 6.707608 ACGATCATCCTGTACGTGTAGTATTA 59.292 38.462 0.00 0.00 37.69 0.98
832 1077 7.389884 ACGATCATCCTGTACGTGTAGTATTAT 59.610 37.037 0.00 0.00 37.69 1.28
833 1078 8.235226 CGATCATCCTGTACGTGTAGTATTATT 58.765 37.037 0.00 0.00 37.69 1.40
834 1079 9.343103 GATCATCCTGTACGTGTAGTATTATTG 57.657 37.037 0.00 0.00 37.69 1.90
835 1080 7.143340 TCATCCTGTACGTGTAGTATTATTGC 58.857 38.462 0.00 0.00 37.69 3.56
836 1081 6.704289 TCCTGTACGTGTAGTATTATTGCT 57.296 37.500 0.00 0.00 37.69 3.91
837 1082 7.104043 TCCTGTACGTGTAGTATTATTGCTT 57.896 36.000 0.00 0.00 37.69 3.91
838 1083 7.198390 TCCTGTACGTGTAGTATTATTGCTTC 58.802 38.462 0.00 0.00 37.69 3.86
839 1084 6.420008 CCTGTACGTGTAGTATTATTGCTTCC 59.580 42.308 0.00 0.00 37.69 3.46
840 1085 6.275335 TGTACGTGTAGTATTATTGCTTCCC 58.725 40.000 0.00 0.00 37.69 3.97
841 1086 5.347620 ACGTGTAGTATTATTGCTTCCCA 57.652 39.130 0.00 0.00 0.00 4.37
842 1087 5.114081 ACGTGTAGTATTATTGCTTCCCAC 58.886 41.667 0.00 0.00 0.00 4.61
843 1088 4.510340 CGTGTAGTATTATTGCTTCCCACC 59.490 45.833 0.00 0.00 0.00 4.61
968 1216 0.039165 CGGGTGCAAGAAAGAAAGCC 60.039 55.000 0.00 0.00 0.00 4.35
1296 1544 3.723348 GGCGGGTTCAACAGCGTC 61.723 66.667 1.80 0.00 0.00 5.19
1552 1800 3.015293 GACTACGCCGACGACGACA 62.015 63.158 11.37 0.00 43.93 4.35
1851 2102 4.524053 TCTTCGTGCTCATCTTCTACCTA 58.476 43.478 0.00 0.00 0.00 3.08
2134 2385 1.842562 CCAACACCATCCTCTCCATCT 59.157 52.381 0.00 0.00 0.00 2.90
2484 2735 2.992114 AAGCACCTCCGCGAGACT 60.992 61.111 8.23 0.00 36.85 3.24
2541 2795 3.665515 TACCTGGATGGCCGACGGA 62.666 63.158 20.50 0.00 40.22 4.69
2544 2798 3.309436 CTGGATGGCCGACGGAACA 62.309 63.158 20.50 16.15 36.79 3.18
2589 2843 4.243008 TCGCCTGACCACGCCAAA 62.243 61.111 0.00 0.00 0.00 3.28
2624 2878 4.558898 CGGCATCCTACAGGTACTCATTAC 60.559 50.000 0.00 0.00 34.60 1.89
2625 2879 4.344102 GGCATCCTACAGGTACTCATTACA 59.656 45.833 0.00 0.00 34.60 2.41
2626 2880 5.290386 GCATCCTACAGGTACTCATTACAC 58.710 45.833 0.00 0.00 34.60 2.90
2628 2882 6.629515 GCATCCTACAGGTACTCATTACACAA 60.630 42.308 0.00 0.00 34.60 3.33
2629 2883 6.921486 TCCTACAGGTACTCATTACACAAA 57.079 37.500 0.00 0.00 34.60 2.83
2630 2884 6.694447 TCCTACAGGTACTCATTACACAAAC 58.306 40.000 0.00 0.00 34.60 2.93
2631 2885 5.575606 CCTACAGGTACTCATTACACAAACG 59.424 44.000 0.00 0.00 34.60 3.60
2632 2886 5.204409 ACAGGTACTCATTACACAAACGA 57.796 39.130 0.00 0.00 34.60 3.85
2634 2888 6.050432 ACAGGTACTCATTACACAAACGAAA 58.950 36.000 0.00 0.00 34.60 3.46
2635 2889 6.539464 ACAGGTACTCATTACACAAACGAAAA 59.461 34.615 0.00 0.00 34.60 2.29
2637 2891 7.533900 CAGGTACTCATTACACAAACGAAAATG 59.466 37.037 0.00 0.00 34.60 2.32
2638 2892 6.304683 GGTACTCATTACACAAACGAAAATGC 59.695 38.462 0.00 0.00 31.46 3.56
2640 2894 7.197071 ACTCATTACACAAACGAAAATGCTA 57.803 32.000 0.00 0.00 0.00 3.49
2641 2895 7.644490 ACTCATTACACAAACGAAAATGCTAA 58.356 30.769 0.00 0.00 0.00 3.09
2642 2896 8.132362 ACTCATTACACAAACGAAAATGCTAAA 58.868 29.630 0.00 0.00 0.00 1.85
2644 2898 9.302345 TCATTACACAAACGAAAATGCTAAAAA 57.698 25.926 0.00 0.00 0.00 1.94
2670 2924 9.653287 AATCTTACGTCAGATTTTTAGACATGA 57.347 29.630 17.28 0.00 40.04 3.07
2671 2925 8.689251 TCTTACGTCAGATTTTTAGACATGAG 57.311 34.615 0.00 0.00 32.68 2.90
2672 2926 8.520351 TCTTACGTCAGATTTTTAGACATGAGA 58.480 33.333 0.00 0.00 32.68 3.27
2673 2927 9.140286 CTTACGTCAGATTTTTAGACATGAGAA 57.860 33.333 0.00 0.00 32.68 2.87
2674 2928 7.962964 ACGTCAGATTTTTAGACATGAGAAA 57.037 32.000 0.00 0.00 32.68 2.52
2675 2929 8.553459 ACGTCAGATTTTTAGACATGAGAAAT 57.447 30.769 0.00 0.00 32.68 2.17
2676 2930 8.660373 ACGTCAGATTTTTAGACATGAGAAATC 58.340 33.333 0.00 7.61 37.12 2.17
2677 2931 7.843204 CGTCAGATTTTTAGACATGAGAAATCG 59.157 37.037 0.00 5.15 40.09 3.34
2678 2932 8.873830 GTCAGATTTTTAGACATGAGAAATCGA 58.126 33.333 0.00 0.00 40.09 3.59
2679 2933 9.435688 TCAGATTTTTAGACATGAGAAATCGAA 57.564 29.630 0.00 0.20 40.09 3.71
2682 2936 8.847444 ATTTTTAGACATGAGAAATCGAATGC 57.153 30.769 0.00 0.00 0.00 3.56
2683 2937 7.615582 TTTTAGACATGAGAAATCGAATGCT 57.384 32.000 0.00 0.00 0.00 3.79
2684 2938 7.615582 TTTAGACATGAGAAATCGAATGCTT 57.384 32.000 0.00 0.00 0.00 3.91
2685 2939 7.615582 TTAGACATGAGAAATCGAATGCTTT 57.384 32.000 0.00 0.00 0.00 3.51
2686 2940 6.506500 AGACATGAGAAATCGAATGCTTTT 57.493 33.333 0.00 0.00 0.00 2.27
2687 2941 7.615582 AGACATGAGAAATCGAATGCTTTTA 57.384 32.000 0.00 0.00 0.00 1.52
2688 2942 8.218338 AGACATGAGAAATCGAATGCTTTTAT 57.782 30.769 0.00 0.00 0.00 1.40
2691 2945 5.581605 TGAGAAATCGAATGCTTTTATGGC 58.418 37.500 0.00 0.00 0.00 4.40
2711 2965 2.878406 GCACTTTGCCTAGTTGTTCTCA 59.122 45.455 0.00 0.00 37.42 3.27
2713 2967 4.130118 CACTTTGCCTAGTTGTTCTCACT 58.870 43.478 0.00 0.00 0.00 3.41
2714 2968 4.576463 CACTTTGCCTAGTTGTTCTCACTT 59.424 41.667 0.00 0.00 0.00 3.16
2715 2969 4.576463 ACTTTGCCTAGTTGTTCTCACTTG 59.424 41.667 0.00 0.00 0.00 3.16
2950 3210 4.794439 TGCTCCGCCGTCATGTCG 62.794 66.667 5.32 5.32 0.00 4.35
3127 3387 2.766400 CGCCAACCACAACACCGTT 61.766 57.895 0.00 0.00 0.00 4.44
3148 3408 3.367051 CTTCGACGGCAACATGCGG 62.367 63.158 8.16 8.16 46.21 5.69
3283 3543 5.310409 TCAAGAAGAAGAAGGTGACCAAT 57.690 39.130 3.63 0.00 0.00 3.16
3322 3582 1.359833 CACGCAAAAGCTCAAGGCA 59.640 52.632 0.00 0.00 44.79 4.75
3337 3597 2.569134 GCAGAGGACTTCGACGCT 59.431 61.111 0.00 0.00 0.00 5.07
3761 4022 8.070171 CGAACCATGAATAAAGTTGATGTATCC 58.930 37.037 0.00 0.00 0.00 2.59
3763 4024 8.455903 ACCATGAATAAAGTTGATGTATCCTG 57.544 34.615 0.00 0.00 0.00 3.86
3766 4027 9.559732 CATGAATAAAGTTGATGTATCCTGGTA 57.440 33.333 0.00 0.00 0.00 3.25
3891 4162 2.031919 AACGCGTTCCTGGCATCA 59.968 55.556 20.79 0.00 0.00 3.07
4089 4360 4.227134 ATCGCGCTCGGCATCCTT 62.227 61.111 5.56 0.00 43.84 3.36
4179 4450 2.031314 CACGTGCATCATGAATCCTGAC 59.969 50.000 0.82 0.00 0.00 3.51
4183 4454 3.311871 GTGCATCATGAATCCTGACACTC 59.688 47.826 0.00 0.00 0.00 3.51
4207 4478 3.433882 CGACCTAGCTAGGATCCCGATAT 60.434 52.174 40.40 18.82 46.63 1.63
4336 4607 1.734477 CTCCTTCACACTGACCGCG 60.734 63.158 0.00 0.00 0.00 6.46
4531 4802 3.677700 GCGGTTTCTTCAGTTTTTGGGTT 60.678 43.478 0.00 0.00 0.00 4.11
4597 4868 1.064758 GGCAAGACACCCACCATCATA 60.065 52.381 0.00 0.00 0.00 2.15
4750 5021 6.215841 TGGAAATGTTACTTCCCTGGTGTATA 59.784 38.462 1.69 0.00 41.54 1.47
4768 5039 6.350194 GGTGTATATGTTGATCCTCGAGCATA 60.350 42.308 6.99 8.65 0.00 3.14
4772 5043 4.511617 TGTTGATCCTCGAGCATAGATC 57.488 45.455 17.55 17.55 36.49 2.75
4844 5115 4.871557 AGTTAGCAAAGTCGTTGTGTTGTA 59.128 37.500 0.43 0.00 39.63 2.41
4999 5270 3.685139 AGAGCCATGGACCGTAATATG 57.315 47.619 18.40 0.00 0.00 1.78
5001 5272 3.067106 GAGCCATGGACCGTAATATGTG 58.933 50.000 18.40 0.00 0.00 3.21
5002 5273 2.151202 GCCATGGACCGTAATATGTGG 58.849 52.381 18.40 0.00 0.00 4.17
5003 5274 2.486548 GCCATGGACCGTAATATGTGGT 60.487 50.000 18.40 0.00 39.12 4.16
5004 5275 3.138304 CCATGGACCGTAATATGTGGTG 58.862 50.000 5.56 0.00 35.75 4.17
5005 5276 3.181459 CCATGGACCGTAATATGTGGTGA 60.181 47.826 5.56 0.00 35.75 4.02
5006 5277 4.447290 CATGGACCGTAATATGTGGTGAA 58.553 43.478 0.00 0.00 35.75 3.18
5252 7973 2.612604 CGAACAGAGTCGAGAGAGAGA 58.387 52.381 0.00 0.00 43.86 3.10
5288 8827 2.279810 GGAGCTCTCCTATCCGGCC 61.280 68.421 14.64 0.00 46.16 6.13
5340 8891 1.004440 ACGTTCTTCCTCCAGCTGC 60.004 57.895 8.66 0.00 0.00 5.25
5419 8970 3.061848 CCGCCGGCATTTCTGGTT 61.062 61.111 28.98 0.00 43.46 3.67
5469 9020 0.552848 TTGGCATGATCCTCCTTCCC 59.447 55.000 0.00 0.00 0.00 3.97
5541 9158 3.244770 TGTTGAGTGTGGTATTTCCCCTC 60.245 47.826 0.00 0.00 34.77 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.470051 CACCCCCACTAAAAATCGGG 58.530 55.000 0.00 0.00 38.52 5.14
19 20 1.470051 CCACCCCCACTAAAAATCGG 58.530 55.000 0.00 0.00 0.00 4.18
20 21 1.470051 CCCACCCCCACTAAAAATCG 58.530 55.000 0.00 0.00 0.00 3.34
21 22 1.191535 GCCCACCCCCACTAAAAATC 58.808 55.000 0.00 0.00 0.00 2.17
22 23 0.252513 GGCCCACCCCCACTAAAAAT 60.253 55.000 0.00 0.00 0.00 1.82
23 24 1.156566 GGCCCACCCCCACTAAAAA 59.843 57.895 0.00 0.00 0.00 1.94
24 25 2.855597 GGCCCACCCCCACTAAAA 59.144 61.111 0.00 0.00 0.00 1.52
34 35 4.143301 GGGATTGAGGGGCCCACC 62.143 72.222 27.72 16.81 41.64 4.61
35 36 4.143301 GGGGATTGAGGGGCCCAC 62.143 72.222 27.72 20.67 43.89 4.61
38 39 1.293683 TTAAGGGGGATTGAGGGGCC 61.294 60.000 0.00 0.00 0.00 5.80
39 40 0.860457 ATTAAGGGGGATTGAGGGGC 59.140 55.000 0.00 0.00 0.00 5.80
40 41 1.429299 GGATTAAGGGGGATTGAGGGG 59.571 57.143 0.00 0.00 0.00 4.79
41 42 2.143602 TGGATTAAGGGGGATTGAGGG 58.856 52.381 0.00 0.00 0.00 4.30
42 43 3.971468 TTGGATTAAGGGGGATTGAGG 57.029 47.619 0.00 0.00 0.00 3.86
43 44 4.106987 AGGATTGGATTAAGGGGGATTGAG 59.893 45.833 0.00 0.00 0.00 3.02
44 45 4.061657 AGGATTGGATTAAGGGGGATTGA 58.938 43.478 0.00 0.00 0.00 2.57
45 46 4.140947 TCAGGATTGGATTAAGGGGGATTG 60.141 45.833 0.00 0.00 0.00 2.67
46 47 4.061657 TCAGGATTGGATTAAGGGGGATT 58.938 43.478 0.00 0.00 0.00 3.01
47 48 3.659686 CTCAGGATTGGATTAAGGGGGAT 59.340 47.826 0.00 0.00 0.00 3.85
48 49 3.056080 CTCAGGATTGGATTAAGGGGGA 58.944 50.000 0.00 0.00 0.00 4.81
49 50 2.785857 ACTCAGGATTGGATTAAGGGGG 59.214 50.000 0.00 0.00 0.00 5.40
50 51 3.203040 ACACTCAGGATTGGATTAAGGGG 59.797 47.826 0.00 0.00 0.00 4.79
51 52 4.455606 GACACTCAGGATTGGATTAAGGG 58.544 47.826 0.00 0.00 0.00 3.95
52 53 4.080356 TGGACACTCAGGATTGGATTAAGG 60.080 45.833 0.00 0.00 0.00 2.69
53 54 4.878397 GTGGACACTCAGGATTGGATTAAG 59.122 45.833 0.00 0.00 0.00 1.85
54 55 4.622933 CGTGGACACTCAGGATTGGATTAA 60.623 45.833 0.56 0.00 0.00 1.40
55 56 3.118775 CGTGGACACTCAGGATTGGATTA 60.119 47.826 0.56 0.00 0.00 1.75
56 57 2.355108 CGTGGACACTCAGGATTGGATT 60.355 50.000 0.56 0.00 0.00 3.01
57 58 1.208052 CGTGGACACTCAGGATTGGAT 59.792 52.381 0.56 0.00 0.00 3.41
58 59 0.608130 CGTGGACACTCAGGATTGGA 59.392 55.000 0.56 0.00 0.00 3.53
59 60 0.321671 ACGTGGACACTCAGGATTGG 59.678 55.000 0.56 0.00 0.00 3.16
60 61 1.800586 CAACGTGGACACTCAGGATTG 59.199 52.381 0.00 0.00 0.00 2.67
61 62 1.878102 GCAACGTGGACACTCAGGATT 60.878 52.381 0.00 0.00 0.00 3.01
62 63 0.320771 GCAACGTGGACACTCAGGAT 60.321 55.000 0.00 0.00 0.00 3.24
63 64 1.069090 GCAACGTGGACACTCAGGA 59.931 57.895 0.00 0.00 0.00 3.86
64 65 1.227527 TGCAACGTGGACACTCAGG 60.228 57.895 0.00 0.00 0.00 3.86
65 66 0.809636 TGTGCAACGTGGACACTCAG 60.810 55.000 15.42 0.00 43.78 3.35
66 67 0.809636 CTGTGCAACGTGGACACTCA 60.810 55.000 15.42 0.35 43.78 3.41
67 68 0.810031 ACTGTGCAACGTGGACACTC 60.810 55.000 15.42 0.00 43.78 3.51
68 69 0.462375 TACTGTGCAACGTGGACACT 59.538 50.000 15.42 7.60 43.78 3.55
69 70 1.508632 ATACTGTGCAACGTGGACAC 58.491 50.000 9.68 9.68 43.78 3.67
70 71 3.603158 ATATACTGTGCAACGTGGACA 57.397 42.857 10.72 10.72 46.44 4.02
71 72 6.411630 TTTTATATACTGTGCAACGTGGAC 57.588 37.500 0.00 0.00 42.39 4.02
72 73 7.043258 CGTATTTTATATACTGTGCAACGTGGA 60.043 37.037 0.00 0.00 42.39 4.02
73 74 7.061027 CGTATTTTATATACTGTGCAACGTGG 58.939 38.462 0.00 0.00 42.39 4.94
74 75 7.614908 ACGTATTTTATATACTGTGCAACGTG 58.385 34.615 2.99 0.00 42.39 4.49
75 76 7.760131 ACGTATTTTATATACTGTGCAACGT 57.240 32.000 0.00 0.00 42.39 3.99
76 77 8.961092 ACTACGTATTTTATATACTGTGCAACG 58.039 33.333 0.00 0.00 42.39 4.10
78 79 9.806203 ACACTACGTATTTTATATACTGTGCAA 57.194 29.630 0.00 0.00 0.00 4.08
79 80 9.240159 CACACTACGTATTTTATATACTGTGCA 57.760 33.333 0.00 0.00 0.00 4.57
80 81 8.212495 GCACACTACGTATTTTATATACTGTGC 58.788 37.037 15.75 15.75 41.32 4.57
81 82 8.414923 CGCACACTACGTATTTTATATACTGTG 58.585 37.037 0.00 0.00 33.67 3.66
82 83 7.592533 CCGCACACTACGTATTTTATATACTGT 59.407 37.037 0.00 0.00 0.00 3.55
83 84 7.410087 GCCGCACACTACGTATTTTATATACTG 60.410 40.741 0.00 0.00 0.00 2.74
84 85 6.583806 GCCGCACACTACGTATTTTATATACT 59.416 38.462 0.00 0.00 0.00 2.12
85 86 6.451571 CGCCGCACACTACGTATTTTATATAC 60.452 42.308 0.00 0.00 0.00 1.47
86 87 5.568677 CGCCGCACACTACGTATTTTATATA 59.431 40.000 0.00 0.00 0.00 0.86
87 88 4.383649 CGCCGCACACTACGTATTTTATAT 59.616 41.667 0.00 0.00 0.00 0.86
88 89 3.730215 CGCCGCACACTACGTATTTTATA 59.270 43.478 0.00 0.00 0.00 0.98
89 90 2.536803 CGCCGCACACTACGTATTTTAT 59.463 45.455 0.00 0.00 0.00 1.40
90 91 1.919263 CGCCGCACACTACGTATTTTA 59.081 47.619 0.00 0.00 0.00 1.52
91 92 0.717224 CGCCGCACACTACGTATTTT 59.283 50.000 0.00 0.00 0.00 1.82
92 93 1.079875 CCGCCGCACACTACGTATTT 61.080 55.000 0.00 0.00 0.00 1.40
93 94 1.517694 CCGCCGCACACTACGTATT 60.518 57.895 0.00 0.00 0.00 1.89
94 95 2.103538 CCGCCGCACACTACGTAT 59.896 61.111 0.00 0.00 0.00 3.06
95 96 4.781959 GCCGCCGCACACTACGTA 62.782 66.667 0.00 0.00 34.03 3.57
112 113 1.063027 CAATGAGCATAGCACGGTGTG 59.937 52.381 10.24 1.39 36.51 3.82
113 114 1.066215 TCAATGAGCATAGCACGGTGT 60.066 47.619 10.24 0.00 0.00 4.16
114 115 1.655484 TCAATGAGCATAGCACGGTG 58.345 50.000 3.15 3.15 0.00 4.94
115 116 2.615447 CAATCAATGAGCATAGCACGGT 59.385 45.455 0.00 0.00 0.00 4.83
116 117 2.031420 CCAATCAATGAGCATAGCACGG 60.031 50.000 0.00 0.00 0.00 4.94
117 118 2.603892 GCCAATCAATGAGCATAGCACG 60.604 50.000 0.00 0.00 0.00 5.34
118 119 2.359848 TGCCAATCAATGAGCATAGCAC 59.640 45.455 0.00 0.00 32.52 4.40
119 120 2.657143 TGCCAATCAATGAGCATAGCA 58.343 42.857 0.00 0.00 32.52 3.49
120 121 3.506455 AGATGCCAATCAATGAGCATAGC 59.494 43.478 8.18 0.00 42.36 2.97
121 122 5.707242 AAGATGCCAATCAATGAGCATAG 57.293 39.130 8.18 0.00 42.36 2.23
122 123 7.770366 ATTAAGATGCCAATCAATGAGCATA 57.230 32.000 8.18 0.00 42.36 3.14
123 124 6.665992 ATTAAGATGCCAATCAATGAGCAT 57.334 33.333 7.98 7.98 43.87 3.79
124 125 7.585579 TTATTAAGATGCCAATCAATGAGCA 57.414 32.000 0.00 0.00 38.83 4.26
174 175 9.914131 CGGATAGTTTTCTGTATTCTCATGATA 57.086 33.333 0.00 0.00 0.00 2.15
175 176 7.386299 GCGGATAGTTTTCTGTATTCTCATGAT 59.614 37.037 0.00 0.00 0.00 2.45
176 177 6.701841 GCGGATAGTTTTCTGTATTCTCATGA 59.298 38.462 0.00 0.00 0.00 3.07
177 178 6.073548 GGCGGATAGTTTTCTGTATTCTCATG 60.074 42.308 0.00 0.00 0.00 3.07
178 179 5.992217 GGCGGATAGTTTTCTGTATTCTCAT 59.008 40.000 0.00 0.00 0.00 2.90
179 180 5.128827 AGGCGGATAGTTTTCTGTATTCTCA 59.871 40.000 0.00 0.00 0.00 3.27
180 181 5.602628 AGGCGGATAGTTTTCTGTATTCTC 58.397 41.667 0.00 0.00 0.00 2.87
181 182 5.615925 AGGCGGATAGTTTTCTGTATTCT 57.384 39.130 0.00 0.00 0.00 2.40
182 183 7.964604 ATTAGGCGGATAGTTTTCTGTATTC 57.035 36.000 0.00 0.00 0.00 1.75
183 184 8.747538 AAATTAGGCGGATAGTTTTCTGTATT 57.252 30.769 0.00 0.00 0.00 1.89
184 185 9.490379 CTAAATTAGGCGGATAGTTTTCTGTAT 57.510 33.333 0.00 0.00 0.00 2.29
185 186 7.440255 GCTAAATTAGGCGGATAGTTTTCTGTA 59.560 37.037 1.88 0.00 0.00 2.74
186 187 6.260271 GCTAAATTAGGCGGATAGTTTTCTGT 59.740 38.462 1.88 0.00 0.00 3.41
187 188 6.260050 TGCTAAATTAGGCGGATAGTTTTCTG 59.740 38.462 1.88 0.00 0.00 3.02
188 189 6.354130 TGCTAAATTAGGCGGATAGTTTTCT 58.646 36.000 1.88 0.00 0.00 2.52
189 190 6.613755 TGCTAAATTAGGCGGATAGTTTTC 57.386 37.500 1.88 0.00 0.00 2.29
190 191 7.399245 TTTGCTAAATTAGGCGGATAGTTTT 57.601 32.000 1.88 0.00 0.00 2.43
191 192 7.399245 TTTTGCTAAATTAGGCGGATAGTTT 57.601 32.000 1.88 0.00 0.00 2.66
192 193 7.094118 TGTTTTTGCTAAATTAGGCGGATAGTT 60.094 33.333 1.88 0.00 0.00 2.24
193 194 6.376018 TGTTTTTGCTAAATTAGGCGGATAGT 59.624 34.615 1.88 0.00 0.00 2.12
194 195 6.691388 GTGTTTTTGCTAAATTAGGCGGATAG 59.309 38.462 1.88 0.00 0.00 2.08
195 196 6.376018 AGTGTTTTTGCTAAATTAGGCGGATA 59.624 34.615 1.88 0.00 0.00 2.59
196 197 5.185056 AGTGTTTTTGCTAAATTAGGCGGAT 59.815 36.000 1.88 0.00 0.00 4.18
197 198 4.521256 AGTGTTTTTGCTAAATTAGGCGGA 59.479 37.500 1.88 0.00 0.00 5.54
198 199 4.805219 AGTGTTTTTGCTAAATTAGGCGG 58.195 39.130 1.88 0.00 0.00 6.13
199 200 6.523201 CAGTAGTGTTTTTGCTAAATTAGGCG 59.477 38.462 1.88 0.00 0.00 5.52
200 201 6.806739 CCAGTAGTGTTTTTGCTAAATTAGGC 59.193 38.462 1.88 0.00 0.00 3.93
201 202 8.106247 TCCAGTAGTGTTTTTGCTAAATTAGG 57.894 34.615 1.88 0.00 0.00 2.69
204 205 9.515226 TCTATCCAGTAGTGTTTTTGCTAAATT 57.485 29.630 0.00 0.00 0.00 1.82
205 206 9.515226 TTCTATCCAGTAGTGTTTTTGCTAAAT 57.485 29.630 0.00 0.00 0.00 1.40
206 207 8.780249 GTTCTATCCAGTAGTGTTTTTGCTAAA 58.220 33.333 0.00 0.00 0.00 1.85
207 208 8.154856 AGTTCTATCCAGTAGTGTTTTTGCTAA 58.845 33.333 0.00 0.00 0.00 3.09
208 209 7.602644 CAGTTCTATCCAGTAGTGTTTTTGCTA 59.397 37.037 0.00 0.00 0.00 3.49
209 210 6.428159 CAGTTCTATCCAGTAGTGTTTTTGCT 59.572 38.462 0.00 0.00 0.00 3.91
210 211 6.348540 CCAGTTCTATCCAGTAGTGTTTTTGC 60.349 42.308 0.00 0.00 0.00 3.68
211 212 6.934645 TCCAGTTCTATCCAGTAGTGTTTTTG 59.065 38.462 0.00 0.00 0.00 2.44
212 213 7.016268 TCTCCAGTTCTATCCAGTAGTGTTTTT 59.984 37.037 0.00 0.00 0.00 1.94
213 214 6.497259 TCTCCAGTTCTATCCAGTAGTGTTTT 59.503 38.462 0.00 0.00 0.00 2.43
214 215 6.017192 TCTCCAGTTCTATCCAGTAGTGTTT 58.983 40.000 0.00 0.00 0.00 2.83
215 216 5.419471 GTCTCCAGTTCTATCCAGTAGTGTT 59.581 44.000 0.00 0.00 0.00 3.32
216 217 4.951094 GTCTCCAGTTCTATCCAGTAGTGT 59.049 45.833 0.00 0.00 0.00 3.55
217 218 4.950475 TGTCTCCAGTTCTATCCAGTAGTG 59.050 45.833 0.00 0.00 0.00 2.74
218 219 5.194473 TGTCTCCAGTTCTATCCAGTAGT 57.806 43.478 0.00 0.00 0.00 2.73
219 220 5.830457 TGATGTCTCCAGTTCTATCCAGTAG 59.170 44.000 0.00 0.00 0.00 2.57
220 221 5.766590 TGATGTCTCCAGTTCTATCCAGTA 58.233 41.667 0.00 0.00 0.00 2.74
221 222 4.614475 TGATGTCTCCAGTTCTATCCAGT 58.386 43.478 0.00 0.00 0.00 4.00
222 223 5.362143 TCTTGATGTCTCCAGTTCTATCCAG 59.638 44.000 0.00 0.00 0.00 3.86
223 224 5.272402 TCTTGATGTCTCCAGTTCTATCCA 58.728 41.667 0.00 0.00 0.00 3.41
224 225 5.860941 TCTTGATGTCTCCAGTTCTATCC 57.139 43.478 0.00 0.00 0.00 2.59
225 226 6.634805 TGTTCTTGATGTCTCCAGTTCTATC 58.365 40.000 0.00 0.00 0.00 2.08
226 227 6.611613 TGTTCTTGATGTCTCCAGTTCTAT 57.388 37.500 0.00 0.00 0.00 1.98
227 228 6.211384 TCATGTTCTTGATGTCTCCAGTTCTA 59.789 38.462 0.00 0.00 0.00 2.10
228 229 4.963318 TGTTCTTGATGTCTCCAGTTCT 57.037 40.909 0.00 0.00 0.00 3.01
229 230 5.240891 TCATGTTCTTGATGTCTCCAGTTC 58.759 41.667 0.00 0.00 0.00 3.01
230 231 5.012458 TCTCATGTTCTTGATGTCTCCAGTT 59.988 40.000 0.00 0.00 0.00 3.16
231 232 4.529769 TCTCATGTTCTTGATGTCTCCAGT 59.470 41.667 0.00 0.00 0.00 4.00
232 233 5.082251 TCTCATGTTCTTGATGTCTCCAG 57.918 43.478 0.00 0.00 0.00 3.86
233 234 4.774200 TCTCTCATGTTCTTGATGTCTCCA 59.226 41.667 0.00 0.00 0.00 3.86
234 235 5.336150 TCTCTCATGTTCTTGATGTCTCC 57.664 43.478 0.00 0.00 0.00 3.71
235 236 8.939201 TTATTCTCTCATGTTCTTGATGTCTC 57.061 34.615 0.00 0.00 0.00 3.36
270 271 6.239176 GGTCAAATGTTGAGGGTTGTTATCAA 60.239 38.462 0.00 0.00 41.01 2.57
271 272 5.242838 GGTCAAATGTTGAGGGTTGTTATCA 59.757 40.000 0.00 0.00 41.01 2.15
272 273 5.476945 AGGTCAAATGTTGAGGGTTGTTATC 59.523 40.000 0.00 0.00 41.01 1.75
273 274 5.393866 AGGTCAAATGTTGAGGGTTGTTAT 58.606 37.500 0.00 0.00 41.01 1.89
274 275 4.798882 AGGTCAAATGTTGAGGGTTGTTA 58.201 39.130 0.00 0.00 41.01 2.41
275 276 3.642141 AGGTCAAATGTTGAGGGTTGTT 58.358 40.909 0.00 0.00 41.01 2.83
276 277 3.312736 AGGTCAAATGTTGAGGGTTGT 57.687 42.857 0.00 0.00 41.01 3.32
277 278 5.068460 TGTTTAGGTCAAATGTTGAGGGTTG 59.932 40.000 0.00 0.00 41.01 3.77
278 279 5.205056 TGTTTAGGTCAAATGTTGAGGGTT 58.795 37.500 0.00 0.00 41.01 4.11
279 280 4.798882 TGTTTAGGTCAAATGTTGAGGGT 58.201 39.130 0.00 0.00 41.01 4.34
280 281 5.782893 TTGTTTAGGTCAAATGTTGAGGG 57.217 39.130 0.00 0.00 41.01 4.30
288 289 6.239572 CCTCCAACCATTTGTTTAGGTCAAAT 60.240 38.462 0.00 0.00 43.41 2.32
289 290 5.069781 CCTCCAACCATTTGTTTAGGTCAAA 59.930 40.000 0.00 0.00 38.77 2.69
290 291 4.586841 CCTCCAACCATTTGTTTAGGTCAA 59.413 41.667 0.00 0.00 34.72 3.18
291 292 4.141135 TCCTCCAACCATTTGTTTAGGTCA 60.141 41.667 0.00 0.00 38.15 4.02
292 293 4.403734 TCCTCCAACCATTTGTTTAGGTC 58.596 43.478 0.00 0.00 38.15 3.85
293 294 4.407365 CTCCTCCAACCATTTGTTTAGGT 58.593 43.478 0.00 0.00 38.15 3.08
294 295 3.763897 CCTCCTCCAACCATTTGTTTAGG 59.236 47.826 0.00 0.00 38.25 2.69
295 296 4.662278 TCCTCCTCCAACCATTTGTTTAG 58.338 43.478 0.00 0.00 34.00 1.85
296 297 4.733077 TCCTCCTCCAACCATTTGTTTA 57.267 40.909 0.00 0.00 34.00 2.01
297 298 3.611025 TCCTCCTCCAACCATTTGTTT 57.389 42.857 0.00 0.00 34.00 2.83
298 299 3.140144 TCTTCCTCCTCCAACCATTTGTT 59.860 43.478 0.00 0.00 37.80 2.83
299 300 2.716424 TCTTCCTCCTCCAACCATTTGT 59.284 45.455 0.00 0.00 0.00 2.83
300 301 3.439857 TCTTCCTCCTCCAACCATTTG 57.560 47.619 0.00 0.00 0.00 2.32
301 302 4.411013 CTTTCTTCCTCCTCCAACCATTT 58.589 43.478 0.00 0.00 0.00 2.32
302 303 3.815757 GCTTTCTTCCTCCTCCAACCATT 60.816 47.826 0.00 0.00 0.00 3.16
303 304 2.291217 GCTTTCTTCCTCCTCCAACCAT 60.291 50.000 0.00 0.00 0.00 3.55
304 305 1.073923 GCTTTCTTCCTCCTCCAACCA 59.926 52.381 0.00 0.00 0.00 3.67
305 306 1.614583 GGCTTTCTTCCTCCTCCAACC 60.615 57.143 0.00 0.00 0.00 3.77
306 307 1.614583 GGGCTTTCTTCCTCCTCCAAC 60.615 57.143 0.00 0.00 0.00 3.77
307 308 0.698818 GGGCTTTCTTCCTCCTCCAA 59.301 55.000 0.00 0.00 0.00 3.53
308 309 1.553690 CGGGCTTTCTTCCTCCTCCA 61.554 60.000 0.00 0.00 0.00 3.86
309 310 1.222113 CGGGCTTTCTTCCTCCTCC 59.778 63.158 0.00 0.00 0.00 4.30
310 311 0.176910 CTCGGGCTTTCTTCCTCCTC 59.823 60.000 0.00 0.00 0.00 3.71
311 312 0.252284 TCTCGGGCTTTCTTCCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
312 313 0.613777 TTCTCGGGCTTTCTTCCTCC 59.386 55.000 0.00 0.00 0.00 4.30
313 314 1.406205 CCTTCTCGGGCTTTCTTCCTC 60.406 57.143 0.00 0.00 0.00 3.71
314 315 0.615850 CCTTCTCGGGCTTTCTTCCT 59.384 55.000 0.00 0.00 0.00 3.36
315 316 0.613777 TCCTTCTCGGGCTTTCTTCC 59.386 55.000 0.00 0.00 0.00 3.46
316 317 2.028020 TCTTCCTTCTCGGGCTTTCTTC 60.028 50.000 0.00 0.00 0.00 2.87
317 318 1.978580 TCTTCCTTCTCGGGCTTTCTT 59.021 47.619 0.00 0.00 0.00 2.52
326 327 3.057456 TCGTCCTTCTTTCTTCCTTCTCG 60.057 47.826 0.00 0.00 0.00 4.04
413 656 8.169268 CGGAAGTGACATTTTATGTAAGTCTTC 58.831 37.037 0.00 0.00 45.03 2.87
443 686 6.369340 TCGGAAGTGACTCGCAAATAAATAAA 59.631 34.615 0.00 0.00 0.00 1.40
444 687 5.870433 TCGGAAGTGACTCGCAAATAAATAA 59.130 36.000 0.00 0.00 0.00 1.40
445 688 5.412640 TCGGAAGTGACTCGCAAATAAATA 58.587 37.500 0.00 0.00 0.00 1.40
446 689 4.250464 TCGGAAGTGACTCGCAAATAAAT 58.750 39.130 0.00 0.00 0.00 1.40
447 690 3.655486 TCGGAAGTGACTCGCAAATAAA 58.345 40.909 0.00 0.00 0.00 1.40
450 693 2.386661 ATCGGAAGTGACTCGCAAAT 57.613 45.000 0.00 0.00 0.00 2.32
453 696 3.520290 ATTTATCGGAAGTGACTCGCA 57.480 42.857 0.00 0.00 0.00 5.10
454 697 4.859629 AAATTTATCGGAAGTGACTCGC 57.140 40.909 0.00 0.00 0.00 5.03
655 900 1.478137 CCGTACGTCTAGCATTGCTC 58.522 55.000 15.81 0.00 40.44 4.26
656 901 0.102481 CCCGTACGTCTAGCATTGCT 59.898 55.000 16.63 16.63 43.41 3.91
657 902 1.488261 GCCCGTACGTCTAGCATTGC 61.488 60.000 15.21 0.00 0.00 3.56
658 903 1.206745 CGCCCGTACGTCTAGCATTG 61.207 60.000 15.21 0.00 0.00 2.82
659 904 1.065273 CGCCCGTACGTCTAGCATT 59.935 57.895 15.21 0.00 0.00 3.56
660 905 2.117156 ACGCCCGTACGTCTAGCAT 61.117 57.895 15.21 0.00 44.43 3.79
661 906 2.747460 ACGCCCGTACGTCTAGCA 60.747 61.111 15.21 0.00 44.43 3.49
669 914 2.506881 CCCGTACAACGCCCGTAC 60.507 66.667 0.00 0.00 40.91 3.67
670 915 3.757828 CCCCGTACAACGCCCGTA 61.758 66.667 0.00 0.00 40.91 4.02
673 918 2.825075 AAATCCCCCGTACAACGCCC 62.825 60.000 0.00 0.00 40.91 6.13
674 919 0.107752 TAAATCCCCCGTACAACGCC 60.108 55.000 0.00 0.00 40.91 5.68
675 920 1.009078 GTAAATCCCCCGTACAACGC 58.991 55.000 0.00 0.00 40.91 4.84
676 921 2.273557 CTGTAAATCCCCCGTACAACG 58.726 52.381 0.00 0.00 42.11 4.10
677 922 2.635714 CCTGTAAATCCCCCGTACAAC 58.364 52.381 0.00 0.00 0.00 3.32
678 923 1.065272 GCCTGTAAATCCCCCGTACAA 60.065 52.381 0.00 0.00 0.00 2.41
679 924 0.542805 GCCTGTAAATCCCCCGTACA 59.457 55.000 0.00 0.00 0.00 2.90
680 925 0.835276 AGCCTGTAAATCCCCCGTAC 59.165 55.000 0.00 0.00 0.00 3.67
681 926 1.125633 GAGCCTGTAAATCCCCCGTA 58.874 55.000 0.00 0.00 0.00 4.02
682 927 1.912971 GAGCCTGTAAATCCCCCGT 59.087 57.895 0.00 0.00 0.00 5.28
683 928 1.227556 CGAGCCTGTAAATCCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
684 929 0.255033 AACGAGCCTGTAAATCCCCC 59.745 55.000 0.00 0.00 0.00 5.40
685 930 1.065709 TCAACGAGCCTGTAAATCCCC 60.066 52.381 0.00 0.00 0.00 4.81
686 931 2.007608 GTCAACGAGCCTGTAAATCCC 58.992 52.381 0.00 0.00 0.00 3.85
687 932 2.673368 CAGTCAACGAGCCTGTAAATCC 59.327 50.000 0.00 0.00 0.00 3.01
688 933 3.123621 CACAGTCAACGAGCCTGTAAATC 59.876 47.826 0.00 0.00 37.34 2.17
689 934 3.067106 CACAGTCAACGAGCCTGTAAAT 58.933 45.455 0.00 0.00 37.34 1.40
690 935 2.101750 TCACAGTCAACGAGCCTGTAAA 59.898 45.455 0.00 0.00 37.34 2.01
691 936 1.684450 TCACAGTCAACGAGCCTGTAA 59.316 47.619 0.00 0.00 37.34 2.41
692 937 1.324383 TCACAGTCAACGAGCCTGTA 58.676 50.000 0.00 0.00 37.34 2.74
693 938 0.681733 ATCACAGTCAACGAGCCTGT 59.318 50.000 0.00 0.00 39.93 4.00
694 939 1.462283 CAATCACAGTCAACGAGCCTG 59.538 52.381 0.00 0.00 0.00 4.85
695 940 1.609061 CCAATCACAGTCAACGAGCCT 60.609 52.381 0.00 0.00 0.00 4.58
696 941 0.798776 CCAATCACAGTCAACGAGCC 59.201 55.000 0.00 0.00 0.00 4.70
697 942 1.512926 ACCAATCACAGTCAACGAGC 58.487 50.000 0.00 0.00 0.00 5.03
698 943 2.224079 CCAACCAATCACAGTCAACGAG 59.776 50.000 0.00 0.00 0.00 4.18
699 944 2.158885 TCCAACCAATCACAGTCAACGA 60.159 45.455 0.00 0.00 0.00 3.85
700 945 2.217750 TCCAACCAATCACAGTCAACG 58.782 47.619 0.00 0.00 0.00 4.10
701 946 4.853924 ATTCCAACCAATCACAGTCAAC 57.146 40.909 0.00 0.00 0.00 3.18
702 947 6.244654 TCATATTCCAACCAATCACAGTCAA 58.755 36.000 0.00 0.00 0.00 3.18
703 948 5.814481 TCATATTCCAACCAATCACAGTCA 58.186 37.500 0.00 0.00 0.00 3.41
704 949 6.949352 ATCATATTCCAACCAATCACAGTC 57.051 37.500 0.00 0.00 0.00 3.51
705 950 8.821686 TTAATCATATTCCAACCAATCACAGT 57.178 30.769 0.00 0.00 0.00 3.55
706 951 8.355169 CCTTAATCATATTCCAACCAATCACAG 58.645 37.037 0.00 0.00 0.00 3.66
707 952 7.287466 CCCTTAATCATATTCCAACCAATCACA 59.713 37.037 0.00 0.00 0.00 3.58
708 953 7.255942 CCCCTTAATCATATTCCAACCAATCAC 60.256 40.741 0.00 0.00 0.00 3.06
709 954 6.782000 CCCCTTAATCATATTCCAACCAATCA 59.218 38.462 0.00 0.00 0.00 2.57
710 955 6.211384 CCCCCTTAATCATATTCCAACCAATC 59.789 42.308 0.00 0.00 0.00 2.67
711 956 6.084060 CCCCCTTAATCATATTCCAACCAAT 58.916 40.000 0.00 0.00 0.00 3.16
712 957 5.196779 TCCCCCTTAATCATATTCCAACCAA 59.803 40.000 0.00 0.00 0.00 3.67
713 958 4.734503 TCCCCCTTAATCATATTCCAACCA 59.265 41.667 0.00 0.00 0.00 3.67
714 959 5.077564 GTCCCCCTTAATCATATTCCAACC 58.922 45.833 0.00 0.00 0.00 3.77
715 960 4.760204 CGTCCCCCTTAATCATATTCCAAC 59.240 45.833 0.00 0.00 0.00 3.77
716 961 4.202524 CCGTCCCCCTTAATCATATTCCAA 60.203 45.833 0.00 0.00 0.00 3.53
717 962 3.329520 CCGTCCCCCTTAATCATATTCCA 59.670 47.826 0.00 0.00 0.00 3.53
718 963 3.872630 GCCGTCCCCCTTAATCATATTCC 60.873 52.174 0.00 0.00 0.00 3.01
719 964 3.344515 GCCGTCCCCCTTAATCATATTC 58.655 50.000 0.00 0.00 0.00 1.75
720 965 2.041216 GGCCGTCCCCCTTAATCATATT 59.959 50.000 0.00 0.00 0.00 1.28
721 966 1.633945 GGCCGTCCCCCTTAATCATAT 59.366 52.381 0.00 0.00 0.00 1.78
722 967 1.061546 GGCCGTCCCCCTTAATCATA 58.938 55.000 0.00 0.00 0.00 2.15
723 968 1.844130 GGCCGTCCCCCTTAATCAT 59.156 57.895 0.00 0.00 0.00 2.45
724 969 3.326900 GGCCGTCCCCCTTAATCA 58.673 61.111 0.00 0.00 0.00 2.57
735 980 2.781431 ATTTTCAGGGTGGGGCCGTC 62.781 60.000 0.00 0.00 38.44 4.79
736 981 2.781431 GATTTTCAGGGTGGGGCCGT 62.781 60.000 0.00 0.00 38.44 5.68
737 982 2.037208 ATTTTCAGGGTGGGGCCG 59.963 61.111 0.00 0.00 38.44 6.13
738 983 0.972471 CTGATTTTCAGGGTGGGGCC 60.972 60.000 0.00 0.00 40.71 5.80
739 984 2.583472 CTGATTTTCAGGGTGGGGC 58.417 57.895 0.00 0.00 40.71 5.80
758 1003 3.157881 GCCTAATCTAATTGCTTCCCCC 58.842 50.000 0.00 0.00 0.00 5.40
759 1004 3.157881 GGCCTAATCTAATTGCTTCCCC 58.842 50.000 0.00 0.00 0.00 4.81
760 1005 3.570125 GTGGCCTAATCTAATTGCTTCCC 59.430 47.826 3.32 0.00 0.00 3.97
761 1006 3.251004 CGTGGCCTAATCTAATTGCTTCC 59.749 47.826 3.32 0.00 0.00 3.46
762 1007 3.251004 CCGTGGCCTAATCTAATTGCTTC 59.749 47.826 3.32 0.00 0.00 3.86
763 1008 3.214328 CCGTGGCCTAATCTAATTGCTT 58.786 45.455 3.32 0.00 0.00 3.91
764 1009 2.172717 ACCGTGGCCTAATCTAATTGCT 59.827 45.455 3.32 0.00 0.00 3.91
765 1010 2.290641 CACCGTGGCCTAATCTAATTGC 59.709 50.000 3.32 0.00 0.00 3.56
766 1011 3.541632 ACACCGTGGCCTAATCTAATTG 58.458 45.455 3.32 0.00 0.00 2.32
767 1012 3.199071 TGACACCGTGGCCTAATCTAATT 59.801 43.478 3.32 0.00 0.00 1.40
768 1013 2.769663 TGACACCGTGGCCTAATCTAAT 59.230 45.455 3.32 0.00 0.00 1.73
769 1014 2.181125 TGACACCGTGGCCTAATCTAA 58.819 47.619 3.32 0.00 0.00 2.10
770 1015 1.855295 TGACACCGTGGCCTAATCTA 58.145 50.000 3.32 0.00 0.00 1.98
771 1016 1.139058 GATGACACCGTGGCCTAATCT 59.861 52.381 3.32 0.00 0.00 2.40
772 1017 1.583054 GATGACACCGTGGCCTAATC 58.417 55.000 3.32 0.00 0.00 1.75
773 1018 0.180406 GGATGACACCGTGGCCTAAT 59.820 55.000 3.32 0.00 0.00 1.73
774 1019 0.907704 AGGATGACACCGTGGCCTAA 60.908 55.000 3.32 0.00 34.73 2.69
775 1020 1.305802 AGGATGACACCGTGGCCTA 60.306 57.895 3.32 0.00 34.73 3.93
776 1021 2.607750 AGGATGACACCGTGGCCT 60.608 61.111 3.32 0.50 34.73 5.19
777 1022 1.895020 TACAGGATGACACCGTGGCC 61.895 60.000 0.75 0.00 39.69 5.36
778 1023 0.036765 TTACAGGATGACACCGTGGC 60.037 55.000 3.03 0.00 39.69 5.01
779 1024 2.465860 TTTACAGGATGACACCGTGG 57.534 50.000 3.03 0.00 39.69 4.94
780 1025 3.399330 AGTTTTACAGGATGACACCGTG 58.601 45.455 0.00 0.00 39.69 4.94
781 1026 3.764237 AGTTTTACAGGATGACACCGT 57.236 42.857 0.00 0.00 39.69 4.83
782 1027 4.274950 ACAAAGTTTTACAGGATGACACCG 59.725 41.667 0.00 0.00 39.69 4.94
783 1028 5.767816 ACAAAGTTTTACAGGATGACACC 57.232 39.130 0.00 0.00 39.69 4.16
784 1029 6.201425 TCGTACAAAGTTTTACAGGATGACAC 59.799 38.462 0.00 0.00 39.69 3.67
785 1030 6.282167 TCGTACAAAGTTTTACAGGATGACA 58.718 36.000 0.00 0.00 39.69 3.58
786 1031 6.774354 TCGTACAAAGTTTTACAGGATGAC 57.226 37.500 0.00 0.00 39.69 3.06
787 1032 7.156000 TGATCGTACAAAGTTTTACAGGATGA 58.844 34.615 0.00 0.00 39.69 2.92
788 1033 7.359262 TGATCGTACAAAGTTTTACAGGATG 57.641 36.000 0.00 0.00 46.00 3.51
789 1034 7.280205 GGATGATCGTACAAAGTTTTACAGGAT 59.720 37.037 0.00 0.00 0.00 3.24
790 1035 6.592607 GGATGATCGTACAAAGTTTTACAGGA 59.407 38.462 0.00 0.00 0.00 3.86
791 1036 6.594159 AGGATGATCGTACAAAGTTTTACAGG 59.406 38.462 0.00 0.00 0.00 4.00
792 1037 7.117812 ACAGGATGATCGTACAAAGTTTTACAG 59.882 37.037 0.00 0.00 39.69 2.74
793 1038 6.932400 ACAGGATGATCGTACAAAGTTTTACA 59.068 34.615 0.00 0.00 39.69 2.41
794 1039 7.360575 ACAGGATGATCGTACAAAGTTTTAC 57.639 36.000 0.00 0.00 39.69 2.01
795 1040 7.274033 CGTACAGGATGATCGTACAAAGTTTTA 59.726 37.037 0.00 0.00 39.69 1.52
796 1041 6.090358 CGTACAGGATGATCGTACAAAGTTTT 59.910 38.462 0.00 0.00 39.69 2.43
797 1042 5.575606 CGTACAGGATGATCGTACAAAGTTT 59.424 40.000 0.00 0.00 39.69 2.66
798 1043 5.100259 CGTACAGGATGATCGTACAAAGTT 58.900 41.667 0.00 0.00 39.69 2.66
799 1044 4.157289 ACGTACAGGATGATCGTACAAAGT 59.843 41.667 0.00 0.00 43.48 2.66
800 1045 4.499399 CACGTACAGGATGATCGTACAAAG 59.501 45.833 0.00 0.00 43.46 2.77
801 1046 4.082625 ACACGTACAGGATGATCGTACAAA 60.083 41.667 0.00 0.00 43.46 2.83
802 1047 3.441222 ACACGTACAGGATGATCGTACAA 59.559 43.478 0.00 0.00 43.46 2.41
803 1048 3.011818 ACACGTACAGGATGATCGTACA 58.988 45.455 0.00 0.00 43.46 2.90
804 1049 3.687572 ACACGTACAGGATGATCGTAC 57.312 47.619 0.00 0.00 43.46 3.67
805 1050 4.445453 ACTACACGTACAGGATGATCGTA 58.555 43.478 0.00 0.00 43.46 3.43
806 1051 3.276857 ACTACACGTACAGGATGATCGT 58.723 45.455 0.00 0.00 45.16 3.73
807 1052 3.965292 ACTACACGTACAGGATGATCG 57.035 47.619 0.00 0.00 39.69 3.69
808 1053 9.343103 CAATAATACTACACGTACAGGATGATC 57.657 37.037 0.00 0.00 39.69 2.92
809 1054 7.813148 GCAATAATACTACACGTACAGGATGAT 59.187 37.037 0.00 0.00 39.69 2.45
810 1055 7.013942 AGCAATAATACTACACGTACAGGATGA 59.986 37.037 0.00 0.00 39.69 2.92
811 1056 7.145985 AGCAATAATACTACACGTACAGGATG 58.854 38.462 0.00 0.00 46.00 3.51
812 1057 7.286215 AGCAATAATACTACACGTACAGGAT 57.714 36.000 0.00 0.00 0.00 3.24
813 1058 6.704289 AGCAATAATACTACACGTACAGGA 57.296 37.500 0.00 0.00 0.00 3.86
814 1059 6.420008 GGAAGCAATAATACTACACGTACAGG 59.580 42.308 0.00 0.00 0.00 4.00
815 1060 6.420008 GGGAAGCAATAATACTACACGTACAG 59.580 42.308 0.00 0.00 0.00 2.74
816 1061 6.127394 TGGGAAGCAATAATACTACACGTACA 60.127 38.462 0.00 0.00 0.00 2.90
817 1062 6.199719 GTGGGAAGCAATAATACTACACGTAC 59.800 42.308 0.00 0.00 0.00 3.67
818 1063 6.275335 GTGGGAAGCAATAATACTACACGTA 58.725 40.000 0.00 0.00 0.00 3.57
819 1064 5.114081 GTGGGAAGCAATAATACTACACGT 58.886 41.667 0.00 0.00 0.00 4.49
820 1065 4.510340 GGTGGGAAGCAATAATACTACACG 59.490 45.833 0.00 0.00 0.00 4.49
821 1066 5.433526 TGGTGGGAAGCAATAATACTACAC 58.566 41.667 0.00 0.00 0.00 2.90
822 1067 5.702065 TGGTGGGAAGCAATAATACTACA 57.298 39.130 0.00 0.00 0.00 2.74
823 1068 7.553044 GGATATGGTGGGAAGCAATAATACTAC 59.447 40.741 0.00 0.00 0.00 2.73
824 1069 7.311675 GGGATATGGTGGGAAGCAATAATACTA 60.312 40.741 0.00 0.00 0.00 1.82
825 1070 6.485171 GGATATGGTGGGAAGCAATAATACT 58.515 40.000 0.00 0.00 0.00 2.12
826 1071 5.652452 GGGATATGGTGGGAAGCAATAATAC 59.348 44.000 0.00 0.00 0.00 1.89
827 1072 5.555542 AGGGATATGGTGGGAAGCAATAATA 59.444 40.000 0.00 0.00 0.00 0.98
828 1073 4.358006 AGGGATATGGTGGGAAGCAATAAT 59.642 41.667 0.00 0.00 0.00 1.28
829 1074 3.726859 AGGGATATGGTGGGAAGCAATAA 59.273 43.478 0.00 0.00 0.00 1.40
830 1075 3.330701 GAGGGATATGGTGGGAAGCAATA 59.669 47.826 0.00 0.00 0.00 1.90
831 1076 2.108952 GAGGGATATGGTGGGAAGCAAT 59.891 50.000 0.00 0.00 0.00 3.56
832 1077 1.494721 GAGGGATATGGTGGGAAGCAA 59.505 52.381 0.00 0.00 0.00 3.91
833 1078 1.140312 GAGGGATATGGTGGGAAGCA 58.860 55.000 0.00 0.00 0.00 3.91
834 1079 0.402121 GGAGGGATATGGTGGGAAGC 59.598 60.000 0.00 0.00 0.00 3.86
835 1080 1.068121 GGGAGGGATATGGTGGGAAG 58.932 60.000 0.00 0.00 0.00 3.46
836 1081 0.402861 GGGGAGGGATATGGTGGGAA 60.403 60.000 0.00 0.00 0.00 3.97
837 1082 1.241929 GGGGAGGGATATGGTGGGA 59.758 63.158 0.00 0.00 0.00 4.37
838 1083 0.403453 AAGGGGAGGGATATGGTGGG 60.403 60.000 0.00 0.00 0.00 4.61
839 1084 1.985895 GTAAGGGGAGGGATATGGTGG 59.014 57.143 0.00 0.00 0.00 4.61
840 1085 1.985895 GGTAAGGGGAGGGATATGGTG 59.014 57.143 0.00 0.00 0.00 4.17
841 1086 1.484446 CGGTAAGGGGAGGGATATGGT 60.484 57.143 0.00 0.00 0.00 3.55
842 1087 1.276622 CGGTAAGGGGAGGGATATGG 58.723 60.000 0.00 0.00 0.00 2.74
843 1088 0.613777 GCGGTAAGGGGAGGGATATG 59.386 60.000 0.00 0.00 0.00 1.78
968 1216 2.404215 TCCTCTCTTTTCTTTCACGCG 58.596 47.619 3.53 3.53 0.00 6.01
1434 1682 1.448013 GAACCTACACTCGCAGGGC 60.448 63.158 0.00 0.00 36.15 5.19
1786 2037 2.363711 TACGGGCTGATGATGGACGC 62.364 60.000 0.00 0.00 0.00 5.19
2134 2385 3.324108 GGGGTAGTCCACGGCCAA 61.324 66.667 2.24 0.00 37.22 4.52
2430 2681 2.745884 CGGGCGTTGAAGGCATCA 60.746 61.111 12.18 0.00 38.57 3.07
2541 2795 3.302344 GTGCCGGGCCAATGTGTT 61.302 61.111 17.97 0.00 0.00 3.32
2544 2798 3.069946 CATGTGCCGGGCCAATGT 61.070 61.111 17.97 0.00 0.00 2.71
2644 2898 9.653287 TCATGTCTAAAAATCTGACGTAAGATT 57.347 29.630 20.66 20.66 46.52 2.40
2646 2900 8.520351 TCTCATGTCTAAAAATCTGACGTAAGA 58.480 33.333 4.72 4.72 43.62 2.10
2649 2903 9.653287 ATTTCTCATGTCTAAAAATCTGACGTA 57.347 29.630 0.00 0.00 33.81 3.57
2651 2905 7.843204 CGATTTCTCATGTCTAAAAATCTGACG 59.157 37.037 0.00 0.00 35.29 4.35
2652 2906 8.873830 TCGATTTCTCATGTCTAAAAATCTGAC 58.126 33.333 0.00 0.00 35.29 3.51
2656 2910 8.951969 GCATTCGATTTCTCATGTCTAAAAATC 58.048 33.333 0.00 2.56 34.51 2.17
2657 2911 8.680903 AGCATTCGATTTCTCATGTCTAAAAAT 58.319 29.630 0.00 0.00 0.00 1.82
2658 2912 8.044060 AGCATTCGATTTCTCATGTCTAAAAA 57.956 30.769 0.00 0.00 0.00 1.94
2659 2913 7.615582 AGCATTCGATTTCTCATGTCTAAAA 57.384 32.000 0.00 0.00 0.00 1.52
2660 2914 7.615582 AAGCATTCGATTTCTCATGTCTAAA 57.384 32.000 0.00 0.00 0.00 1.85
2661 2915 7.615582 AAAGCATTCGATTTCTCATGTCTAA 57.384 32.000 0.00 0.00 0.00 2.10
2662 2916 7.615582 AAAAGCATTCGATTTCTCATGTCTA 57.384 32.000 0.00 0.00 28.45 2.59
2663 2917 6.506500 AAAAGCATTCGATTTCTCATGTCT 57.493 33.333 0.00 0.00 28.45 3.41
2664 2918 7.377928 CCATAAAAGCATTCGATTTCTCATGTC 59.622 37.037 0.00 0.00 28.45 3.06
2665 2919 7.198390 CCATAAAAGCATTCGATTTCTCATGT 58.802 34.615 0.00 0.00 28.45 3.21
2666 2920 6.143438 GCCATAAAAGCATTCGATTTCTCATG 59.857 38.462 0.00 0.00 28.45 3.07
2667 2921 6.183360 TGCCATAAAAGCATTCGATTTCTCAT 60.183 34.615 0.00 0.00 34.69 2.90
2668 2922 5.125257 TGCCATAAAAGCATTCGATTTCTCA 59.875 36.000 0.00 0.00 34.69 3.27
2669 2923 5.456822 GTGCCATAAAAGCATTCGATTTCTC 59.543 40.000 0.00 0.00 43.29 2.87
2670 2924 5.126061 AGTGCCATAAAAGCATTCGATTTCT 59.874 36.000 0.00 0.00 43.29 2.52
2671 2925 5.343249 AGTGCCATAAAAGCATTCGATTTC 58.657 37.500 0.00 0.00 43.29 2.17
2672 2926 5.329035 AGTGCCATAAAAGCATTCGATTT 57.671 34.783 0.00 0.00 43.29 2.17
2673 2927 4.989279 AGTGCCATAAAAGCATTCGATT 57.011 36.364 0.00 0.00 43.29 3.34
2674 2928 4.989279 AAGTGCCATAAAAGCATTCGAT 57.011 36.364 0.00 0.00 43.29 3.59
2675 2929 4.484236 CAAAGTGCCATAAAAGCATTCGA 58.516 39.130 0.00 0.00 43.29 3.71
2676 2930 3.061161 GCAAAGTGCCATAAAAGCATTCG 59.939 43.478 0.00 0.00 43.29 3.34
2677 2931 4.588805 GCAAAGTGCCATAAAAGCATTC 57.411 40.909 0.00 0.00 43.29 2.67
2691 2945 4.130118 AGTGAGAACAACTAGGCAAAGTG 58.870 43.478 0.00 0.00 0.00 3.16
2709 2963 0.798159 GATGCATGCGTGACAAGTGA 59.202 50.000 19.18 0.00 0.00 3.41
2711 2965 1.237533 TTGATGCATGCGTGACAAGT 58.762 45.000 19.18 0.00 0.00 3.16
2713 2967 1.336125 TGTTTGATGCATGCGTGACAA 59.664 42.857 19.18 13.37 0.00 3.18
2714 2968 0.950116 TGTTTGATGCATGCGTGACA 59.050 45.000 19.18 15.57 0.00 3.58
2715 2969 2.049077 TTGTTTGATGCATGCGTGAC 57.951 45.000 19.18 13.18 0.00 3.67
2860 3120 0.872021 GCTTCTCCCGCGACATGTAG 60.872 60.000 8.23 0.00 0.00 2.74
2950 3210 2.125106 AGGATGAAGGGCGCGTTC 60.125 61.111 8.43 12.86 0.00 3.95
3127 3387 0.237235 GCATGTTGCCGTCGAAGAAA 59.763 50.000 0.00 0.00 35.96 2.52
3172 3432 2.581409 CCGGTGCCGACGTACATC 60.581 66.667 12.71 0.00 42.83 3.06
3205 3465 0.862283 CGAAGCCGTAGAGAGCGAAC 60.862 60.000 0.00 0.00 0.00 3.95
3283 3543 1.669440 CGACTCGGGGTCCTTGAAA 59.331 57.895 1.68 0.00 41.64 2.69
3311 3571 1.003003 GAAGTCCTCTGCCTTGAGCTT 59.997 52.381 0.00 0.00 44.23 3.74
3322 3582 1.928706 GCTCAGCGTCGAAGTCCTCT 61.929 60.000 0.00 0.00 0.00 3.69
3355 3615 3.771160 CCGAACCGCCTAGGCACT 61.771 66.667 32.47 16.35 46.52 4.40
3361 3621 2.263540 GAGTTGCCGAACCGCCTA 59.736 61.111 0.00 0.00 31.81 3.93
3783 4054 4.020039 TCATTCACCGGTAACACAGGTATT 60.020 41.667 6.87 0.00 44.86 1.89
3891 4162 0.674895 GCAGGAACATGAGCTTCCGT 60.675 55.000 0.00 0.00 41.97 4.69
4089 4360 2.879233 GCCCGACCACTTGACCTCA 61.879 63.158 0.00 0.00 0.00 3.86
4104 4375 0.329596 AGTCCTCCAGTTCAATGCCC 59.670 55.000 0.00 0.00 0.00 5.36
4179 4450 2.039818 TCCTAGCTAGGTCGTGAGTG 57.960 55.000 33.84 10.14 44.02 3.51
4183 4454 1.249407 GGGATCCTAGCTAGGTCGTG 58.751 60.000 33.84 12.90 44.02 4.35
4207 4478 1.145156 CACGTGGTGGTCAGGTCAA 59.855 57.895 7.95 0.00 41.91 3.18
4245 4516 0.316442 CGCGCTTATGCCTGTCATTG 60.316 55.000 5.56 0.00 36.63 2.82
4246 4517 2.016961 CGCGCTTATGCCTGTCATT 58.983 52.632 5.56 0.00 36.63 2.57
4288 4559 1.033746 CGGCCATCACCTTGAGCAAT 61.034 55.000 2.24 0.00 0.00 3.56
4531 4802 1.489481 ATGGGTTGAGATGAGCGAGA 58.511 50.000 0.00 0.00 0.00 4.04
4597 4868 1.067295 TGAGGCCTGACCAGACAAAT 58.933 50.000 12.00 0.00 43.14 2.32
4750 5021 4.081752 GGATCTATGCTCGAGGATCAACAT 60.082 45.833 23.64 13.72 37.06 2.71
4768 5039 4.101448 GGGTGCTGGCGTGGATCT 62.101 66.667 0.00 0.00 0.00 2.75
4999 5270 3.102052 TCTAACGTTCACCTTCACCAC 57.898 47.619 2.82 0.00 0.00 4.16
5001 5272 5.684550 AAATTCTAACGTTCACCTTCACC 57.315 39.130 2.82 0.00 0.00 4.02
5002 5273 7.295930 CCTAAAATTCTAACGTTCACCTTCAC 58.704 38.462 2.82 0.00 0.00 3.18
5003 5274 6.428771 CCCTAAAATTCTAACGTTCACCTTCA 59.571 38.462 2.82 0.00 0.00 3.02
5004 5275 6.652062 TCCCTAAAATTCTAACGTTCACCTTC 59.348 38.462 2.82 0.00 0.00 3.46
5005 5276 6.536447 TCCCTAAAATTCTAACGTTCACCTT 58.464 36.000 2.82 0.00 0.00 3.50
5006 5277 6.117975 TCCCTAAAATTCTAACGTTCACCT 57.882 37.500 2.82 0.00 0.00 4.00
5061 5951 8.425491 CGTTATTAGATGTATCGTGAAATCACC 58.575 37.037 7.91 0.00 43.66 4.02
5071 5961 6.028368 AGCGATTCCGTTATTAGATGTATCG 58.972 40.000 0.00 0.00 38.24 2.92
5084 5974 4.260620 CGGATGAAAAATAGCGATTCCGTT 60.261 41.667 7.07 0.00 38.24 4.44
5191 7468 0.324830 AGGGAACGAGAGAGGGGAAG 60.325 60.000 0.00 0.00 0.00 3.46
5252 7973 1.528824 CAAGTCGCCATGGATCCCT 59.471 57.895 18.40 1.51 0.00 4.20
5321 8860 1.016653 GCAGCTGGAGGAAGAACGTC 61.017 60.000 17.12 0.00 0.00 4.34
5340 8891 4.760047 CAGACTTCCGTGCGGGGG 62.760 72.222 10.94 6.51 36.01 5.40
5419 8970 5.353956 CGAACATACCAAATCACAGGATCAA 59.646 40.000 0.00 0.00 31.88 2.57
5469 9020 5.459110 AACAGTACACACAACTAACAACG 57.541 39.130 0.00 0.00 0.00 4.10
5541 9158 9.035607 CAAACCACATACATCTAAACTAGCTAG 57.964 37.037 19.44 19.44 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.