Multiple sequence alignment - TraesCS2D01G125200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G125200 chr2D 100.000 4894 0 0 1 4894 73132822 73137715 0.000000e+00 9038.0
1 TraesCS2D01G125200 chr2D 81.413 1033 131 35 2875 3882 72621505 72620509 0.000000e+00 787.0
2 TraesCS2D01G125200 chr2D 84.165 802 100 17 1165 1953 72622764 72621977 0.000000e+00 752.0
3 TraesCS2D01G125200 chr2D 83.791 802 102 18 1165 1953 72352497 72351711 0.000000e+00 736.0
4 TraesCS2D01G125200 chr2D 80.000 670 87 29 2875 3520 72351238 72350592 7.470000e-123 451.0
5 TraesCS2D01G125200 chr2D 87.097 186 21 3 2003 2186 352948013 352947829 1.790000e-49 207.0
6 TraesCS2D01G125200 chr2D 87.770 139 11 4 2724 2860 72351424 72351290 1.820000e-34 158.0
7 TraesCS2D01G125200 chr2D 97.260 73 2 0 1111 1183 72368627 72368555 1.850000e-24 124.0
8 TraesCS2D01G125200 chr2D 97.778 45 1 0 437 481 484404488 484404444 1.460000e-10 78.7
9 TraesCS2D01G125200 chr2D 97.778 45 1 0 436 480 592408491 592408535 1.460000e-10 78.7
10 TraesCS2D01G125200 chr2B 92.687 4157 167 50 810 4894 110621205 110625296 0.000000e+00 5866.0
11 TraesCS2D01G125200 chr2B 87.120 955 93 16 2881 3812 109317865 109316918 0.000000e+00 1055.0
12 TraesCS2D01G125200 chr2B 83.469 1107 105 33 954 2023 109319406 109318341 0.000000e+00 959.0
13 TraesCS2D01G125200 chr2B 81.589 1032 131 34 2875 3882 109069137 109068141 0.000000e+00 798.0
14 TraesCS2D01G125200 chr2B 81.395 1032 133 34 2875 3882 109776150 109775154 0.000000e+00 787.0
15 TraesCS2D01G125200 chr2B 85.889 737 81 13 1111 1835 109075115 109074390 0.000000e+00 763.0
16 TraesCS2D01G125200 chr2B 80.911 1032 138 35 2875 3882 109148609 109147613 0.000000e+00 760.0
17 TraesCS2D01G125200 chr2B 87.173 421 37 8 1111 1523 109159939 109159528 3.450000e-126 462.0
18 TraesCS2D01G125200 chr2B 87.050 417 39 8 1111 1520 109787504 109787096 1.610000e-124 457.0
19 TraesCS2D01G125200 chr2B 89.389 311 17 3 1 295 110618540 110618850 1.290000e-100 377.0
20 TraesCS2D01G125200 chr2B 81.759 307 32 8 6 288 110620631 110620937 8.190000e-58 235.0
21 TraesCS2D01G125200 chr2B 87.770 139 11 4 2724 2860 109069323 109069189 1.820000e-34 158.0
22 TraesCS2D01G125200 chr2B 75.182 411 62 26 2285 2668 694543570 694543967 1.820000e-34 158.0
23 TraesCS2D01G125200 chr2B 95.833 48 2 0 504 551 110618892 110618939 1.460000e-10 78.7
24 TraesCS2D01G125200 chr4D 89.481 694 62 10 4028 4714 47554976 47555665 0.000000e+00 867.0
25 TraesCS2D01G125200 chr4D 83.505 291 38 7 1 288 63910400 63910683 3.760000e-66 263.0
26 TraesCS2D01G125200 chr2A 84.064 935 84 29 1111 2023 71110376 71109485 0.000000e+00 841.0
27 TraesCS2D01G125200 chr2A 84.690 823 89 22 1111 1911 71072476 71071669 0.000000e+00 787.0
28 TraesCS2D01G125200 chr2A 80.948 1034 128 27 2875 3882 71106636 71105646 0.000000e+00 754.0
29 TraesCS2D01G125200 chr2A 81.954 870 109 26 1111 1953 71108605 71107757 0.000000e+00 693.0
30 TraesCS2D01G125200 chr2A 85.196 358 39 7 2875 3219 71109020 71108664 6.030000e-94 355.0
31 TraesCS2D01G125200 chr7D 88.633 695 69 8 4025 4714 611009560 611010249 0.000000e+00 837.0
32 TraesCS2D01G125200 chr7D 87.358 617 60 12 4102 4714 261116539 261117141 0.000000e+00 691.0
33 TraesCS2D01G125200 chr7D 79.565 230 28 13 2458 2670 187246796 187247023 3.950000e-31 147.0
34 TraesCS2D01G125200 chr4A 87.518 697 70 12 4024 4714 704622997 704622312 0.000000e+00 789.0
35 TraesCS2D01G125200 chr4A 81.583 695 112 12 4028 4714 589338716 589339402 1.190000e-155 560.0
36 TraesCS2D01G125200 chr4A 81.529 314 34 13 5 297 67888760 67888450 2.280000e-58 237.0
37 TraesCS2D01G125200 chr4A 97.826 46 1 0 507 552 67888407 67888362 4.060000e-11 80.5
38 TraesCS2D01G125200 chr4A 95.745 47 2 0 436 482 740880628 740880674 5.250000e-10 76.8
39 TraesCS2D01G125200 chr5A 87.246 690 80 6 4028 4714 602916988 602917672 0.000000e+00 780.0
40 TraesCS2D01G125200 chr5A 90.854 164 15 0 2017 2180 320214407 320214244 2.290000e-53 220.0
41 TraesCS2D01G125200 chr5A 81.522 92 11 4 8 94 564868149 564868059 2.440000e-08 71.3
42 TraesCS2D01G125200 chr5A 97.222 36 1 0 2623 2658 437226470 437226435 1.470000e-05 62.1
43 TraesCS2D01G125200 chr5D 88.474 642 65 7 4029 4666 437533327 437532691 0.000000e+00 767.0
44 TraesCS2D01G125200 chr5D 87.845 181 20 2 2011 2191 377987994 377988172 1.380000e-50 211.0
45 TraesCS2D01G125200 chrUn 89.775 577 51 5 4028 4601 30115628 30115057 0.000000e+00 732.0
46 TraesCS2D01G125200 chr7A 90.116 172 14 3 2012 2180 677696238 677696409 2.290000e-53 220.0
47 TraesCS2D01G125200 chr7B 87.709 179 20 2 2010 2186 384970830 384970652 1.790000e-49 207.0
48 TraesCS2D01G125200 chr7B 97.727 44 1 0 507 550 702687585 702687542 5.250000e-10 76.8
49 TraesCS2D01G125200 chr6A 88.953 172 14 4 2018 2185 214179674 214179504 1.790000e-49 207.0
50 TraesCS2D01G125200 chr6A 94.737 38 2 0 515 552 559315992 559316029 5.290000e-05 60.2
51 TraesCS2D01G125200 chr3A 85.859 198 24 4 1994 2189 585297958 585298153 1.790000e-49 207.0
52 TraesCS2D01G125200 chr3D 87.500 184 16 6 2019 2199 87926161 87925982 6.420000e-49 206.0
53 TraesCS2D01G125200 chr3D 94.231 52 2 1 2616 2666 1382624 1382675 1.460000e-10 78.7
54 TraesCS2D01G125200 chr6D 87.597 129 14 2 9 136 161399341 161399214 1.100000e-31 148.0
55 TraesCS2D01G125200 chr6D 97.959 49 1 0 436 484 460808284 460808332 8.730000e-13 86.1
56 TraesCS2D01G125200 chr6D 100.000 36 0 0 2623 2658 13167759 13167724 3.160000e-07 67.6
57 TraesCS2D01G125200 chr6D 92.683 41 1 2 2623 2661 24617338 24617298 1.900000e-04 58.4
58 TraesCS2D01G125200 chr5B 83.478 115 17 2 2555 2668 471858225 471858112 6.700000e-19 106.0
59 TraesCS2D01G125200 chr5B 94.000 50 3 0 504 553 26602640 26602689 5.250000e-10 76.8
60 TraesCS2D01G125200 chr5B 92.308 52 3 1 437 488 657434314 657434364 6.800000e-09 73.1
61 TraesCS2D01G125200 chr1D 83.696 92 13 2 2567 2658 348066009 348065920 8.730000e-13 86.1
62 TraesCS2D01G125200 chr1A 78.261 138 27 3 2527 2662 493102926 493103062 8.730000e-13 86.1
63 TraesCS2D01G125200 chr6B 97.917 48 1 0 436 483 42749449 42749496 3.140000e-12 84.2
64 TraesCS2D01G125200 chr4B 94.545 55 2 1 435 489 673112380 673112433 3.140000e-12 84.2
65 TraesCS2D01G125200 chr4B 93.878 49 3 0 504 552 578036762 578036810 1.890000e-09 75.0
66 TraesCS2D01G125200 chr1B 94.231 52 3 0 437 488 638674700 638674649 4.060000e-11 80.5
67 TraesCS2D01G125200 chr1B 94.118 51 2 1 436 485 476928440 476928390 5.250000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G125200 chr2D 73132822 73137715 4893 False 9038.000000 9038 100.000000 1 4894 1 chr2D.!!$F1 4893
1 TraesCS2D01G125200 chr2D 72620509 72622764 2255 True 769.500000 787 82.789000 1165 3882 2 chr2D.!!$R5 2717
2 TraesCS2D01G125200 chr2D 72350592 72352497 1905 True 448.333333 736 83.853667 1165 3520 3 chr2D.!!$R4 2355
3 TraesCS2D01G125200 chr2B 110618540 110625296 6756 False 1639.175000 5866 89.917000 1 4894 4 chr2B.!!$F2 4893
4 TraesCS2D01G125200 chr2B 109316918 109319406 2488 True 1007.000000 1055 85.294500 954 3812 2 chr2B.!!$R7 2858
5 TraesCS2D01G125200 chr2B 109775154 109776150 996 True 787.000000 787 81.395000 2875 3882 1 chr2B.!!$R4 1007
6 TraesCS2D01G125200 chr2B 109074390 109075115 725 True 763.000000 763 85.889000 1111 1835 1 chr2B.!!$R1 724
7 TraesCS2D01G125200 chr2B 109147613 109148609 996 True 760.000000 760 80.911000 2875 3882 1 chr2B.!!$R2 1007
8 TraesCS2D01G125200 chr2B 109068141 109069323 1182 True 478.000000 798 84.679500 2724 3882 2 chr2B.!!$R6 1158
9 TraesCS2D01G125200 chr4D 47554976 47555665 689 False 867.000000 867 89.481000 4028 4714 1 chr4D.!!$F1 686
10 TraesCS2D01G125200 chr2A 71071669 71072476 807 True 787.000000 787 84.690000 1111 1911 1 chr2A.!!$R1 800
11 TraesCS2D01G125200 chr2A 71105646 71110376 4730 True 660.750000 841 83.040500 1111 3882 4 chr2A.!!$R2 2771
12 TraesCS2D01G125200 chr7D 611009560 611010249 689 False 837.000000 837 88.633000 4025 4714 1 chr7D.!!$F3 689
13 TraesCS2D01G125200 chr7D 261116539 261117141 602 False 691.000000 691 87.358000 4102 4714 1 chr7D.!!$F2 612
14 TraesCS2D01G125200 chr4A 704622312 704622997 685 True 789.000000 789 87.518000 4024 4714 1 chr4A.!!$R1 690
15 TraesCS2D01G125200 chr4A 589338716 589339402 686 False 560.000000 560 81.583000 4028 4714 1 chr4A.!!$F1 686
16 TraesCS2D01G125200 chr5A 602916988 602917672 684 False 780.000000 780 87.246000 4028 4714 1 chr5A.!!$F1 686
17 TraesCS2D01G125200 chr5D 437532691 437533327 636 True 767.000000 767 88.474000 4029 4666 1 chr5D.!!$R1 637
18 TraesCS2D01G125200 chrUn 30115057 30115628 571 True 732.000000 732 89.775000 4028 4601 1 chrUn.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 412 0.179137 GGATTTGCCCTTGCTAACGC 60.179 55.000 0.00 0.0 35.10 4.84 F
757 2706 0.250467 CCATATCCCCGGCTCACAAG 60.250 60.000 0.00 0.0 0.00 3.16 F
760 2709 0.325296 TATCCCCGGCTCACAAGTCT 60.325 55.000 0.00 0.0 0.00 3.24 F
1600 5375 0.397941 TTCAGGGTGCAGAGTTCAGG 59.602 55.000 0.00 0.0 0.00 3.86 F
1610 5390 0.835543 AGAGTTCAGGGTGCAGAGCT 60.836 55.000 0.00 0.0 0.00 4.09 F
2486 6341 1.066908 CGGGTCAATGTTTTGTGCACT 59.933 47.619 19.41 0.0 34.32 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 5376 0.034616 AGGACTGACAAGCTCTGCAC 59.965 55.000 0.00 0.00 0.00 4.57 R
1719 5500 0.984230 CTGGTTCTGGAGCAACCCTA 59.016 55.000 0.81 0.00 42.51 3.53 R
2440 6290 1.426251 TTTGGCAAGAGCTCCCTCCA 61.426 55.000 10.93 12.02 41.70 3.86 R
2442 6292 1.620822 TTTTTGGCAAGAGCTCCCTC 58.379 50.000 10.93 0.00 41.70 4.30 R
2704 6651 3.322254 AGGATGTACCGAGACATGGAATC 59.678 47.826 6.85 0.00 40.18 2.52 R
3945 8618 1.296392 CCCAGAACCATCGTGCTCA 59.704 57.895 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.978343 TTTGTAATACGGGATGAACTCTTG 57.022 37.500 0.00 0.00 0.00 3.02
66 67 8.355169 TGTAATACGGGATGAACTCTTGTATAC 58.645 37.037 0.00 0.00 0.00 1.47
128 129 5.044428 ACACAGACTGTTCATCGTAGTAC 57.956 43.478 5.04 0.00 0.00 2.73
237 254 9.093970 AGAAAGGAAAACCAAAAAGATAAAACG 57.906 29.630 0.00 0.00 0.00 3.60
241 258 9.304731 AGGAAAACCAAAAAGATAAAACGTAAC 57.695 29.630 0.00 0.00 0.00 2.50
267 284 6.976934 AAAGGCAATAGAAGAAAAGGAACA 57.023 33.333 0.00 0.00 0.00 3.18
288 305 0.869880 AAAACCAAAGCAGCGAACGC 60.870 50.000 11.31 11.31 42.33 4.84
312 401 4.660789 AGCATGTCAAATAGGATTTGCC 57.339 40.909 6.99 0.00 31.65 4.52
314 403 3.385755 GCATGTCAAATAGGATTTGCCCT 59.614 43.478 6.99 0.00 40.29 5.19
315 404 4.141869 GCATGTCAAATAGGATTTGCCCTT 60.142 41.667 6.99 0.00 37.74 3.95
317 406 3.195396 TGTCAAATAGGATTTGCCCTTGC 59.805 43.478 6.99 0.00 37.74 4.01
318 407 3.448660 GTCAAATAGGATTTGCCCTTGCT 59.551 43.478 6.99 0.00 37.74 3.91
319 408 4.644685 GTCAAATAGGATTTGCCCTTGCTA 59.355 41.667 6.99 0.00 37.74 3.49
320 409 5.127031 GTCAAATAGGATTTGCCCTTGCTAA 59.873 40.000 6.99 0.00 37.74 3.09
322 411 1.463674 AGGATTTGCCCTTGCTAACG 58.536 50.000 0.00 0.00 35.10 3.18
323 412 0.179137 GGATTTGCCCTTGCTAACGC 60.179 55.000 0.00 0.00 35.10 4.84
324 413 0.811281 GATTTGCCCTTGCTAACGCT 59.189 50.000 0.00 0.00 35.10 5.07
325 414 0.811281 ATTTGCCCTTGCTAACGCTC 59.189 50.000 0.00 0.00 35.10 5.03
326 415 1.573829 TTTGCCCTTGCTAACGCTCG 61.574 55.000 0.00 0.00 38.71 5.03
327 416 3.865830 GCCCTTGCTAACGCTCGC 61.866 66.667 0.00 0.00 36.97 5.03
328 417 3.554692 CCCTTGCTAACGCTCGCG 61.555 66.667 10.06 10.06 46.03 5.87
329 418 4.210304 CCTTGCTAACGCTCGCGC 62.210 66.667 11.65 0.00 44.19 6.86
352 458 3.987807 GTCAAGAAGACGAGCATTCAG 57.012 47.619 0.00 0.00 37.53 3.02
359 477 0.659957 GACGAGCATTCAGGAATGGC 59.340 55.000 20.22 13.56 46.14 4.40
363 481 2.492773 GCATTCAGGAATGGCCCGG 61.493 63.158 20.22 0.00 46.14 5.73
365 483 4.794648 TTCAGGAATGGCCCGGCG 62.795 66.667 0.00 0.00 37.37 6.46
370 488 4.573950 GAATGGCCCGGCGCATTG 62.574 66.667 23.13 0.00 40.31 2.82
403 521 3.932710 CAGCGAGCCAGTACTAAAATTCA 59.067 43.478 0.00 0.00 0.00 2.57
408 526 6.664515 CGAGCCAGTACTAAAATTCACAAAA 58.335 36.000 0.00 0.00 0.00 2.44
427 545 4.463050 AAAAACCACCCTGTATCAAGGA 57.537 40.909 0.00 0.00 40.02 3.36
428 546 3.721087 AAACCACCCTGTATCAAGGAG 57.279 47.619 0.00 0.00 40.02 3.69
429 547 2.344093 ACCACCCTGTATCAAGGAGT 57.656 50.000 0.00 0.00 40.02 3.85
431 549 2.187958 CCACCCTGTATCAAGGAGTCA 58.812 52.381 0.00 0.00 40.02 3.41
432 550 2.571653 CCACCCTGTATCAAGGAGTCAA 59.428 50.000 0.00 0.00 40.02 3.18
433 551 3.009033 CCACCCTGTATCAAGGAGTCAAA 59.991 47.826 0.00 0.00 40.02 2.69
435 553 3.910627 ACCCTGTATCAAGGAGTCAAACT 59.089 43.478 0.00 0.00 40.02 2.66
436 554 5.046591 CACCCTGTATCAAGGAGTCAAACTA 60.047 44.000 0.00 0.00 40.02 2.24
438 556 5.420409 CCTGTATCAAGGAGTCAAACTACC 58.580 45.833 0.00 0.00 40.02 3.18
439 557 5.046591 CCTGTATCAAGGAGTCAAACTACCA 60.047 44.000 0.00 0.00 40.02 3.25
440 558 5.790593 TGTATCAAGGAGTCAAACTACCAC 58.209 41.667 0.00 0.00 25.63 4.16
441 559 3.380479 TCAAGGAGTCAAACTACCACG 57.620 47.619 0.00 0.00 25.63 4.94
442 560 2.696707 TCAAGGAGTCAAACTACCACGT 59.303 45.455 0.00 0.00 25.63 4.49
443 561 3.890756 TCAAGGAGTCAAACTACCACGTA 59.109 43.478 0.00 0.00 25.63 3.57
445 563 4.248691 AGGAGTCAAACTACCACGTAAC 57.751 45.455 0.00 0.00 25.63 2.50
446 564 3.638160 AGGAGTCAAACTACCACGTAACA 59.362 43.478 0.00 0.00 25.63 2.41
448 566 4.362279 GAGTCAAACTACCACGTAACACA 58.638 43.478 0.00 0.00 0.00 3.72
450 568 4.748102 AGTCAAACTACCACGTAACACATG 59.252 41.667 0.00 0.00 0.00 3.21
458 576 3.449322 CACGTAACACATGTGGTAAGC 57.551 47.619 29.36 16.63 40.02 3.09
459 577 2.803386 CACGTAACACATGTGGTAAGCA 59.197 45.455 29.36 8.28 40.02 3.91
460 578 3.248841 CACGTAACACATGTGGTAAGCAA 59.751 43.478 29.36 7.91 40.02 3.91
461 579 4.069304 ACGTAACACATGTGGTAAGCAAT 58.931 39.130 29.36 13.13 36.01 3.56
462 580 4.153475 ACGTAACACATGTGGTAAGCAATC 59.847 41.667 29.36 14.74 36.01 2.67
463 581 4.436852 CGTAACACATGTGGTAAGCAATCC 60.437 45.833 24.79 9.92 34.09 3.01
464 582 3.153369 ACACATGTGGTAAGCAATCCA 57.847 42.857 28.64 0.00 34.19 3.41
466 584 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
467 585 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
468 586 4.022068 CACATGTGGTAAGCAATCCAAACT 60.022 41.667 18.51 0.00 35.38 2.66
469 587 5.182950 CACATGTGGTAAGCAATCCAAACTA 59.817 40.000 18.51 0.00 35.38 2.24
471 589 6.437162 ACATGTGGTAAGCAATCCAAACTATT 59.563 34.615 0.00 0.00 35.38 1.73
472 590 6.509418 TGTGGTAAGCAATCCAAACTATTC 57.491 37.500 0.00 0.00 35.38 1.75
473 591 6.007076 TGTGGTAAGCAATCCAAACTATTCA 58.993 36.000 0.00 0.00 35.38 2.57
505 2321 4.634184 TCAAGGAGTCGAACTGTATAGC 57.366 45.455 0.00 0.00 0.00 2.97
506 2322 3.064958 TCAAGGAGTCGAACTGTATAGCG 59.935 47.826 0.00 0.00 0.00 4.26
509 2325 3.312973 AGGAGTCGAACTGTATAGCGAAG 59.687 47.826 0.00 0.00 34.29 3.79
510 2326 3.065095 GGAGTCGAACTGTATAGCGAAGT 59.935 47.826 0.00 0.00 34.29 3.01
572 2521 2.811431 CCTGTATCGGTGCTGTCAAAAA 59.189 45.455 0.00 0.00 0.00 1.94
607 2556 3.410508 AGAGTATATCGAAGTCCCCGTC 58.589 50.000 0.00 0.00 0.00 4.79
647 2596 3.414700 GCTCACAAGACGCCGTGG 61.415 66.667 0.00 0.00 33.83 4.94
649 2598 4.980805 TCACAAGACGCCGTGGCC 62.981 66.667 5.08 0.00 37.98 5.36
666 2615 2.770164 GCCGGATTGCCATATACTCT 57.230 50.000 5.05 0.00 0.00 3.24
667 2616 2.622436 GCCGGATTGCCATATACTCTC 58.378 52.381 5.05 0.00 0.00 3.20
668 2617 2.678190 GCCGGATTGCCATATACTCTCC 60.678 54.545 5.05 0.00 0.00 3.71
669 2618 2.093447 CCGGATTGCCATATACTCTCCC 60.093 54.545 0.00 0.00 0.00 4.30
670 2619 2.093447 CGGATTGCCATATACTCTCCCC 60.093 54.545 0.00 0.00 0.00 4.81
671 2620 2.912956 GGATTGCCATATACTCTCCCCA 59.087 50.000 0.00 0.00 0.00 4.96
672 2621 3.307762 GGATTGCCATATACTCTCCCCAC 60.308 52.174 0.00 0.00 0.00 4.61
673 2622 1.729586 TGCCATATACTCTCCCCACC 58.270 55.000 0.00 0.00 0.00 4.61
674 2623 0.984995 GCCATATACTCTCCCCACCC 59.015 60.000 0.00 0.00 0.00 4.61
675 2624 1.657804 CCATATACTCTCCCCACCCC 58.342 60.000 0.00 0.00 0.00 4.95
676 2625 1.132527 CCATATACTCTCCCCACCCCA 60.133 57.143 0.00 0.00 0.00 4.96
677 2626 1.978580 CATATACTCTCCCCACCCCAC 59.021 57.143 0.00 0.00 0.00 4.61
678 2627 0.266753 TATACTCTCCCCACCCCACC 59.733 60.000 0.00 0.00 0.00 4.61
679 2628 1.833055 ATACTCTCCCCACCCCACCA 61.833 60.000 0.00 0.00 0.00 4.17
680 2629 1.833055 TACTCTCCCCACCCCACCAT 61.833 60.000 0.00 0.00 0.00 3.55
681 2630 1.004230 CTCTCCCCACCCCACCATA 59.996 63.158 0.00 0.00 0.00 2.74
682 2631 1.004230 TCTCCCCACCCCACCATAG 59.996 63.158 0.00 0.00 0.00 2.23
683 2632 1.307866 CTCCCCACCCCACCATAGT 60.308 63.158 0.00 0.00 0.00 2.12
684 2633 1.307517 TCCCCACCCCACCATAGTC 60.308 63.158 0.00 0.00 0.00 2.59
685 2634 2.742116 CCCCACCCCACCATAGTCG 61.742 68.421 0.00 0.00 0.00 4.18
686 2635 1.993391 CCCACCCCACCATAGTCGT 60.993 63.158 0.00 0.00 0.00 4.34
687 2636 1.520666 CCACCCCACCATAGTCGTC 59.479 63.158 0.00 0.00 0.00 4.20
688 2637 1.141019 CACCCCACCATAGTCGTCG 59.859 63.158 0.00 0.00 0.00 5.12
689 2638 1.000521 ACCCCACCATAGTCGTCGA 60.001 57.895 0.00 0.00 0.00 4.20
690 2639 0.396695 ACCCCACCATAGTCGTCGAT 60.397 55.000 0.00 0.00 0.00 3.59
691 2640 0.314302 CCCCACCATAGTCGTCGATC 59.686 60.000 0.00 0.00 0.00 3.69
692 2641 1.029681 CCCACCATAGTCGTCGATCA 58.970 55.000 0.00 0.00 0.00 2.92
693 2642 1.001268 CCCACCATAGTCGTCGATCAG 60.001 57.143 0.00 0.00 0.00 2.90
694 2643 1.001268 CCACCATAGTCGTCGATCAGG 60.001 57.143 0.00 1.35 0.00 3.86
695 2644 1.676529 CACCATAGTCGTCGATCAGGT 59.323 52.381 0.00 2.02 0.00 4.00
696 2645 1.948145 ACCATAGTCGTCGATCAGGTC 59.052 52.381 0.00 0.00 0.00 3.85
697 2646 1.267261 CCATAGTCGTCGATCAGGTCC 59.733 57.143 0.00 0.00 0.00 4.46
698 2647 2.222886 CATAGTCGTCGATCAGGTCCT 58.777 52.381 0.00 0.00 0.00 3.85
699 2648 3.400255 CATAGTCGTCGATCAGGTCCTA 58.600 50.000 0.00 0.00 0.00 2.94
700 2649 2.642154 AGTCGTCGATCAGGTCCTAT 57.358 50.000 0.00 0.00 0.00 2.57
701 2650 2.933573 AGTCGTCGATCAGGTCCTATT 58.066 47.619 0.00 0.00 0.00 1.73
702 2651 2.879646 AGTCGTCGATCAGGTCCTATTC 59.120 50.000 0.00 0.00 0.00 1.75
703 2652 1.871676 TCGTCGATCAGGTCCTATTCG 59.128 52.381 13.84 13.84 0.00 3.34
704 2653 1.602851 CGTCGATCAGGTCCTATTCGT 59.397 52.381 17.58 0.00 0.00 3.85
705 2654 2.602456 CGTCGATCAGGTCCTATTCGTG 60.602 54.545 17.58 10.72 0.00 4.35
706 2655 1.337071 TCGATCAGGTCCTATTCGTGC 59.663 52.381 17.58 0.00 0.00 5.34
707 2656 1.338337 CGATCAGGTCCTATTCGTGCT 59.662 52.381 12.40 0.00 0.00 4.40
708 2657 2.223829 CGATCAGGTCCTATTCGTGCTT 60.224 50.000 12.40 0.00 0.00 3.91
709 2658 2.672961 TCAGGTCCTATTCGTGCTTG 57.327 50.000 0.00 0.00 0.00 4.01
725 2674 4.559300 CGTGCTTGATTTGATTTGGGTTCT 60.559 41.667 0.00 0.00 0.00 3.01
727 2676 3.681417 GCTTGATTTGATTTGGGTTCTGC 59.319 43.478 0.00 0.00 0.00 4.26
745 2694 1.613925 TGCTAGACAGACGCCATATCC 59.386 52.381 0.00 0.00 0.00 2.59
746 2695 1.067495 GCTAGACAGACGCCATATCCC 60.067 57.143 0.00 0.00 0.00 3.85
747 2696 1.546476 CTAGACAGACGCCATATCCCC 59.454 57.143 0.00 0.00 0.00 4.81
749 2698 2.343758 CAGACGCCATATCCCCGG 59.656 66.667 0.00 0.00 0.00 5.73
750 2699 3.626924 AGACGCCATATCCCCGGC 61.627 66.667 0.00 0.00 45.28 6.13
752 2701 3.591254 GACGCCATATCCCCGGCTC 62.591 68.421 0.00 0.00 46.62 4.70
753 2702 3.625897 CGCCATATCCCCGGCTCA 61.626 66.667 0.00 0.00 46.62 4.26
754 2703 2.032681 GCCATATCCCCGGCTCAC 59.967 66.667 0.00 0.00 45.29 3.51
755 2704 2.818169 GCCATATCCCCGGCTCACA 61.818 63.158 0.00 0.00 45.29 3.58
756 2705 1.836391 CCATATCCCCGGCTCACAA 59.164 57.895 0.00 0.00 0.00 3.33
757 2706 0.250467 CCATATCCCCGGCTCACAAG 60.250 60.000 0.00 0.00 0.00 3.16
759 2708 0.759346 ATATCCCCGGCTCACAAGTC 59.241 55.000 0.00 0.00 0.00 3.01
760 2709 0.325296 TATCCCCGGCTCACAAGTCT 60.325 55.000 0.00 0.00 0.00 3.24
761 2710 1.617947 ATCCCCGGCTCACAAGTCTC 61.618 60.000 0.00 0.00 0.00 3.36
762 2711 2.266055 CCCGGCTCACAAGTCTCC 59.734 66.667 0.00 0.00 0.00 3.71
763 2712 2.286523 CCCGGCTCACAAGTCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
764 2713 0.970937 CCCGGCTCACAAGTCTCCTA 60.971 60.000 0.00 0.00 0.00 2.94
768 2717 2.688446 CGGCTCACAAGTCTCCTATACA 59.312 50.000 0.00 0.00 0.00 2.29
769 2718 3.319405 CGGCTCACAAGTCTCCTATACAT 59.681 47.826 0.00 0.00 0.00 2.29
770 2719 4.519350 CGGCTCACAAGTCTCCTATACATA 59.481 45.833 0.00 0.00 0.00 2.29
771 2720 5.009710 CGGCTCACAAGTCTCCTATACATAA 59.990 44.000 0.00 0.00 0.00 1.90
772 2721 6.461092 CGGCTCACAAGTCTCCTATACATAAA 60.461 42.308 0.00 0.00 0.00 1.40
774 2723 7.600752 GGCTCACAAGTCTCCTATACATAAATC 59.399 40.741 0.00 0.00 0.00 2.17
775 2724 7.600752 GCTCACAAGTCTCCTATACATAAATCC 59.399 40.741 0.00 0.00 0.00 3.01
776 2725 8.547481 TCACAAGTCTCCTATACATAAATCCA 57.453 34.615 0.00 0.00 0.00 3.41
777 2726 8.642432 TCACAAGTCTCCTATACATAAATCCAG 58.358 37.037 0.00 0.00 0.00 3.86
778 2727 8.424918 CACAAGTCTCCTATACATAAATCCAGT 58.575 37.037 0.00 0.00 0.00 4.00
779 2728 8.424918 ACAAGTCTCCTATACATAAATCCAGTG 58.575 37.037 0.00 0.00 0.00 3.66
780 2729 7.546250 AGTCTCCTATACATAAATCCAGTGG 57.454 40.000 1.40 1.40 0.00 4.00
781 2730 6.498651 AGTCTCCTATACATAAATCCAGTGGG 59.501 42.308 9.92 0.00 0.00 4.61
782 2731 5.785423 TCTCCTATACATAAATCCAGTGGGG 59.215 44.000 9.92 0.00 38.37 4.96
790 2739 4.896979 TCCAGTGGGGAGAGAAGG 57.103 61.111 9.92 0.00 42.15 3.46
791 2740 1.613630 TCCAGTGGGGAGAGAAGGC 60.614 63.158 9.92 0.00 42.15 4.35
792 2741 1.614824 CCAGTGGGGAGAGAAGGCT 60.615 63.158 0.00 0.00 40.01 4.58
793 2742 1.621672 CCAGTGGGGAGAGAAGGCTC 61.622 65.000 0.00 0.00 40.01 4.70
804 2753 3.596310 GAGAAGGCTCTTCTTAACCGT 57.404 47.619 15.74 0.00 38.16 4.83
805 2754 4.715527 GAGAAGGCTCTTCTTAACCGTA 57.284 45.455 15.74 0.00 38.16 4.02
806 2755 4.422840 GAGAAGGCTCTTCTTAACCGTAC 58.577 47.826 15.74 1.45 38.16 3.67
807 2756 3.830755 AGAAGGCTCTTCTTAACCGTACA 59.169 43.478 10.59 0.00 0.00 2.90
808 2757 4.282703 AGAAGGCTCTTCTTAACCGTACAA 59.717 41.667 10.59 0.00 0.00 2.41
829 2778 6.181190 ACAAGATTAGGGTTAAGAAAGGCTC 58.819 40.000 0.00 0.00 0.00 4.70
843 2792 1.118838 AGGCTCTGGATTCCTCTTCG 58.881 55.000 3.95 0.00 0.00 3.79
884 2833 1.676006 GCCGTCCCAACATAAATCCAG 59.324 52.381 0.00 0.00 0.00 3.86
931 2882 7.310664 TGCGGTTTATATATCTGTAGTACAGC 58.689 38.462 23.14 9.80 45.54 4.40
993 2945 1.229400 ACCCCTTCCCTTGCGACTA 60.229 57.895 0.00 0.00 0.00 2.59
1030 2982 2.812499 GCCGTCTCTTCCGCCATA 59.188 61.111 0.00 0.00 0.00 2.74
1095 3067 3.900892 CGAGGACGATCCCCACGG 61.901 72.222 9.66 0.00 42.66 4.94
1186 3158 1.376812 CCTTGTCTTGTACGGCCCC 60.377 63.158 0.00 0.00 0.00 5.80
1200 3179 2.046892 CCCCCGCTCAGAAGTGTG 60.047 66.667 0.00 0.00 0.00 3.82
1201 3180 2.743928 CCCCGCTCAGAAGTGTGC 60.744 66.667 0.00 0.00 39.38 4.57
1225 3204 3.823061 GCTCCCTCCTATACATCATCCCA 60.823 52.174 0.00 0.00 0.00 4.37
1234 3213 1.671979 ACATCATCCCACGCAGATTG 58.328 50.000 0.00 0.00 0.00 2.67
1235 3214 0.949397 CATCATCCCACGCAGATTGG 59.051 55.000 0.00 0.00 0.00 3.16
1236 3215 0.820891 ATCATCCCACGCAGATTGGC 60.821 55.000 0.00 0.00 32.13 4.52
1251 3230 2.505982 GGCTTCATCCGCCAGCTA 59.494 61.111 0.00 0.00 46.77 3.32
1252 3231 1.596477 GGCTTCATCCGCCAGCTAG 60.596 63.158 0.00 0.00 46.77 3.42
1253 3232 2.250237 GCTTCATCCGCCAGCTAGC 61.250 63.158 6.62 6.62 0.00 3.42
1254 3233 1.445095 CTTCATCCGCCAGCTAGCT 59.555 57.895 12.68 12.68 0.00 3.32
1255 3234 0.879400 CTTCATCCGCCAGCTAGCTG 60.879 60.000 33.58 33.58 43.26 4.24
1256 3235 1.617018 TTCATCCGCCAGCTAGCTGT 61.617 55.000 36.14 19.58 42.15 4.40
1257 3236 1.153289 CATCCGCCAGCTAGCTGTT 60.153 57.895 36.14 16.99 42.15 3.16
1258 3237 1.144936 ATCCGCCAGCTAGCTGTTC 59.855 57.895 36.14 26.98 42.15 3.18
1259 3238 2.317149 ATCCGCCAGCTAGCTGTTCC 62.317 60.000 36.14 24.44 42.15 3.62
1260 3239 2.265739 CGCCAGCTAGCTGTTCCA 59.734 61.111 36.14 0.00 42.15 3.53
1261 3240 1.153289 CGCCAGCTAGCTGTTCCAT 60.153 57.895 36.14 4.18 42.15 3.41
1293 3272 7.190335 AGTAGGATGATCTACTCGCTAGTAT 57.810 40.000 0.00 0.00 44.62 2.12
1298 3277 9.116067 AGGATGATCTACTCGCTAGTATTATTC 57.884 37.037 0.00 0.00 37.57 1.75
1334 3315 7.847096 ACCATTAGTCATAACATGTACTCACA 58.153 34.615 0.00 0.00 39.52 3.58
1335 3316 8.486210 ACCATTAGTCATAACATGTACTCACAT 58.514 33.333 0.00 0.00 46.58 3.21
1550 5325 3.964031 AGTTTGTTGATGGGCCTTACAAA 59.036 39.130 13.55 13.55 36.63 2.83
1598 5373 1.211703 TGTTTCAGGGTGCAGAGTTCA 59.788 47.619 0.00 0.00 0.00 3.18
1599 5374 1.876156 GTTTCAGGGTGCAGAGTTCAG 59.124 52.381 0.00 0.00 0.00 3.02
1600 5375 0.397941 TTCAGGGTGCAGAGTTCAGG 59.602 55.000 0.00 0.00 0.00 3.86
1601 5376 1.002868 CAGGGTGCAGAGTTCAGGG 60.003 63.158 0.00 0.00 0.00 4.45
1602 5377 1.462238 AGGGTGCAGAGTTCAGGGT 60.462 57.895 0.00 0.00 0.00 4.34
1603 5378 1.302832 GGGTGCAGAGTTCAGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
1604 5379 1.968540 GGTGCAGAGTTCAGGGTGC 60.969 63.158 0.00 0.00 36.42 5.01
1605 5380 1.227943 GTGCAGAGTTCAGGGTGCA 60.228 57.895 0.00 0.00 43.50 4.57
1610 5390 0.835543 AGAGTTCAGGGTGCAGAGCT 60.836 55.000 0.00 0.00 0.00 4.09
1710 5491 3.118542 CCTCAAAAAGCACAACTTCTGC 58.881 45.455 0.00 0.00 37.75 4.26
1719 5500 4.664677 AACTTCTGCGCTCGCGGT 62.665 61.111 20.62 9.01 46.77 5.68
1924 5716 7.093727 TGTCTAGTAGTCCCTCTGATTTGAAAG 60.094 40.741 0.00 0.00 0.00 2.62
2076 5870 8.516234 AGAGATTTTAGCATAGTCTACATACGG 58.484 37.037 0.00 0.00 0.00 4.02
2123 5917 4.935205 TGTAGATTCACTCATTTTGACCCG 59.065 41.667 0.00 0.00 0.00 5.28
2186 5980 9.813826 ATTTAGGAATGGAGGGAGTAATTAATG 57.186 33.333 0.00 0.00 0.00 1.90
2187 5981 6.206180 AGGAATGGAGGGAGTAATTAATGG 57.794 41.667 0.00 0.00 0.00 3.16
2191 5985 7.231519 GGAATGGAGGGAGTAATTAATGGAAAG 59.768 40.741 0.00 0.00 0.00 2.62
2303 6151 2.253610 TCAGTATCGGAAAGGTGTGGT 58.746 47.619 0.00 0.00 0.00 4.16
2440 6290 9.504708 TTCTTGCAAAATTTCATCCACAAATAT 57.495 25.926 0.00 0.00 0.00 1.28
2442 6292 7.612668 TGCAAAATTTCATCCACAAATATGG 57.387 32.000 0.00 0.00 41.57 2.74
2450 6300 2.492025 TCCACAAATATGGAGGGAGCT 58.508 47.619 0.00 0.00 44.14 4.09
2451 6301 2.439507 TCCACAAATATGGAGGGAGCTC 59.560 50.000 4.71 4.71 44.14 4.09
2452 6302 2.441001 CCACAAATATGGAGGGAGCTCT 59.559 50.000 14.64 0.00 43.02 4.09
2454 6304 3.881688 CACAAATATGGAGGGAGCTCTTG 59.118 47.826 14.64 9.17 0.00 3.02
2455 6305 2.883386 CAAATATGGAGGGAGCTCTTGC 59.117 50.000 14.64 8.42 40.05 4.01
2481 6336 4.664150 AAATCACGGGTCAATGTTTTGT 57.336 36.364 0.00 0.00 34.32 2.83
2486 6341 1.066908 CGGGTCAATGTTTTGTGCACT 59.933 47.619 19.41 0.00 34.32 4.40
2496 6351 7.763528 TCAATGTTTTGTGCACTTTTTGAGTAT 59.236 29.630 19.41 0.00 33.86 2.12
2501 6356 9.243637 GTTTTGTGCACTTTTTGAGTATATGAA 57.756 29.630 19.41 0.00 36.65 2.57
2503 6358 9.979578 TTTGTGCACTTTTTGAGTATATGAATT 57.020 25.926 19.41 0.00 36.65 2.17
2504 6359 9.979578 TTGTGCACTTTTTGAGTATATGAATTT 57.020 25.926 19.41 0.00 36.65 1.82
2505 6360 9.409312 TGTGCACTTTTTGAGTATATGAATTTG 57.591 29.630 19.41 0.00 36.65 2.32
2541 6401 8.292448 TGAGAGCTTTATTTGTGATGAAACTTC 58.708 33.333 0.00 0.00 0.00 3.01
2578 6438 6.070897 ACATTTGATCACGTTTGATGTTGA 57.929 33.333 0.00 0.00 42.95 3.18
2613 6473 9.357652 AGAATTTTTGGATCACGTTTGATATTG 57.642 29.630 0.00 0.00 42.95 1.90
2666 6547 1.067071 ACACCCGAGAGTCGAAAATCC 60.067 52.381 0.00 0.00 43.74 3.01
2879 7515 1.153549 GACTTGGCTGACCCTAGCG 60.154 63.158 0.00 0.00 44.60 4.26
2902 7538 5.953777 CGTTTCATGACATTACACTGATTCG 59.046 40.000 0.00 0.00 0.00 3.34
2941 7577 3.494626 CGTATTGTCTTGCCGATTGCTAT 59.505 43.478 0.00 0.00 42.00 2.97
2957 7593 9.639601 CCGATTGCTATTGATTGAACTAGTATA 57.360 33.333 0.00 0.00 0.00 1.47
2993 7629 7.084486 GCTTTGAATTAGTCGATCAGGTTTTT 58.916 34.615 0.00 0.00 0.00 1.94
3408 8079 4.032445 GCAACTACAATTTCATGCATGCAG 59.968 41.667 26.69 17.32 34.10 4.41
3683 8356 1.227249 TTTTGTGTGGAAGGGAGGGA 58.773 50.000 0.00 0.00 0.00 4.20
3846 8519 2.749621 AGCTAATGTACAACAAGCTGGC 59.250 45.455 22.09 9.71 39.90 4.85
3964 8637 2.045926 AGCACGATGGTTCTGGGC 60.046 61.111 0.00 0.00 0.00 5.36
3985 8658 3.073062 GCTATTTGCCCCTATTCTCTCCA 59.927 47.826 0.00 0.00 35.15 3.86
4013 8686 8.607459 CGACCATTAAGAATCCATATATTGCTC 58.393 37.037 0.00 0.00 0.00 4.26
4015 8688 9.236006 ACCATTAAGAATCCATATATTGCTCAC 57.764 33.333 0.00 0.00 0.00 3.51
4148 8823 4.398988 ACACACAATCAACATCAACACACT 59.601 37.500 0.00 0.00 0.00 3.55
4193 8877 9.981114 AATAACAAAGTCAAATAAGACCAAAGG 57.019 29.630 0.00 0.00 39.34 3.11
4381 9068 1.000843 GATCCAACCACCAAAGGCAAC 59.999 52.381 0.00 0.00 0.00 4.17
4511 9201 1.208165 AGGCTTTCACCCCGGATCTT 61.208 55.000 0.73 0.00 0.00 2.40
4632 9324 2.273449 GCACCACCATCCCTCTGG 59.727 66.667 0.00 0.00 42.35 3.86
4725 9418 4.750098 CACAAAGACCTTCTGTACACGAAT 59.250 41.667 0.00 0.00 0.00 3.34
4745 9438 3.791973 TCATGCACAACGTTCCTTTTT 57.208 38.095 0.00 0.00 0.00 1.94
4761 9454 4.881850 TCCTTTTTCTCTCCACACACTTTC 59.118 41.667 0.00 0.00 0.00 2.62
4854 9547 4.155950 TGTGCGCACATTTCTGGT 57.844 50.000 37.86 0.00 36.21 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 215 6.204108 TGGTTTTCCTTTCTAGCTCTTTTACG 59.796 38.462 0.00 0.00 41.38 3.18
208 224 9.758651 TTTATCTTTTTGGTTTTCCTTTCTAGC 57.241 29.630 0.00 0.00 41.38 3.42
237 254 8.978539 CCTTTTCTTCTATTGCCTTTTTGTTAC 58.021 33.333 0.00 0.00 0.00 2.50
241 258 7.710475 TGTTCCTTTTCTTCTATTGCCTTTTTG 59.290 33.333 0.00 0.00 0.00 2.44
243 260 7.360113 TGTTCCTTTTCTTCTATTGCCTTTT 57.640 32.000 0.00 0.00 0.00 2.27
274 291 1.789739 CTTCGCGTTCGCTGCTTTG 60.790 57.895 14.92 0.00 35.26 2.77
288 305 4.736793 GCAAATCCTATTTGACATGCTTCG 59.263 41.667 14.83 0.00 0.00 3.79
295 312 3.195396 GCAAGGGCAAATCCTATTTGACA 59.805 43.478 17.53 0.00 39.13 3.58
365 483 3.332493 CTGTGACGCCAGGCAATGC 62.332 63.158 13.30 0.00 36.97 3.56
381 499 3.932710 TGAATTTTAGTACTGGCTCGCTG 59.067 43.478 5.39 0.00 0.00 5.18
408 526 2.986728 ACTCCTTGATACAGGGTGGTTT 59.013 45.455 0.00 0.00 34.24 3.27
411 529 2.187958 TGACTCCTTGATACAGGGTGG 58.812 52.381 0.00 0.00 34.24 4.61
415 533 5.046591 TGGTAGTTTGACTCCTTGATACAGG 60.047 44.000 0.00 0.00 34.86 4.00
423 541 4.099881 TGTTACGTGGTAGTTTGACTCCTT 59.900 41.667 0.00 0.00 0.00 3.36
425 543 3.737774 GTGTTACGTGGTAGTTTGACTCC 59.262 47.826 0.00 0.00 0.00 3.85
426 544 4.362279 TGTGTTACGTGGTAGTTTGACTC 58.638 43.478 0.00 0.00 0.00 3.36
427 545 4.389890 TGTGTTACGTGGTAGTTTGACT 57.610 40.909 0.00 0.00 0.00 3.41
428 546 4.508861 ACATGTGTTACGTGGTAGTTTGAC 59.491 41.667 0.00 0.00 39.36 3.18
429 547 4.508492 CACATGTGTTACGTGGTAGTTTGA 59.492 41.667 18.03 0.00 39.36 2.69
431 549 3.810941 CCACATGTGTTACGTGGTAGTTT 59.189 43.478 23.79 0.00 44.27 2.66
432 550 3.395639 CCACATGTGTTACGTGGTAGTT 58.604 45.455 23.79 0.00 44.27 2.24
433 551 3.034721 CCACATGTGTTACGTGGTAGT 57.965 47.619 23.79 0.00 44.27 2.73
438 556 2.803386 TGCTTACCACATGTGTTACGTG 59.197 45.455 23.79 10.21 40.80 4.49
439 557 3.114668 TGCTTACCACATGTGTTACGT 57.885 42.857 23.79 16.29 0.00 3.57
440 558 4.436852 GGATTGCTTACCACATGTGTTACG 60.437 45.833 23.79 13.21 0.00 3.18
441 559 4.457603 TGGATTGCTTACCACATGTGTTAC 59.542 41.667 23.79 9.40 0.00 2.50
442 560 4.657013 TGGATTGCTTACCACATGTGTTA 58.343 39.130 23.79 12.19 0.00 2.41
443 561 3.495331 TGGATTGCTTACCACATGTGTT 58.505 40.909 23.79 13.33 0.00 3.32
445 563 4.022068 AGTTTGGATTGCTTACCACATGTG 60.022 41.667 19.31 19.31 35.81 3.21
446 564 4.151883 AGTTTGGATTGCTTACCACATGT 58.848 39.130 0.00 0.00 35.81 3.21
448 566 6.663093 TGAATAGTTTGGATTGCTTACCACAT 59.337 34.615 0.00 0.00 35.81 3.21
450 568 6.509418 TGAATAGTTTGGATTGCTTACCAC 57.491 37.500 0.00 0.00 35.81 4.16
485 2301 3.064958 TCGCTATACAGTTCGACTCCTTG 59.935 47.826 0.00 0.00 0.00 3.61
487 2303 2.915349 TCGCTATACAGTTCGACTCCT 58.085 47.619 0.00 0.00 0.00 3.69
489 2305 4.275838 ACTTCGCTATACAGTTCGACTC 57.724 45.455 0.00 0.00 0.00 3.36
491 2307 3.000971 GCAACTTCGCTATACAGTTCGAC 60.001 47.826 0.00 0.00 0.00 4.20
492 2308 3.176708 GCAACTTCGCTATACAGTTCGA 58.823 45.455 0.00 0.00 0.00 3.71
493 2309 2.921121 TGCAACTTCGCTATACAGTTCG 59.079 45.455 0.00 0.00 0.00 3.95
499 2315 2.271800 ACTGCTGCAACTTCGCTATAC 58.728 47.619 3.02 0.00 0.00 1.47
500 2316 2.672961 ACTGCTGCAACTTCGCTATA 57.327 45.000 3.02 0.00 0.00 1.31
502 2318 1.264020 CAAACTGCTGCAACTTCGCTA 59.736 47.619 3.02 0.00 0.00 4.26
505 2321 1.746760 GTCAAACTGCTGCAACTTCG 58.253 50.000 3.02 0.00 0.00 3.79
506 2322 1.746760 CGTCAAACTGCTGCAACTTC 58.253 50.000 3.02 0.00 0.00 3.01
509 2325 1.063972 TGCGTCAAACTGCTGCAAC 59.936 52.632 3.02 0.00 31.69 4.17
510 2326 1.063972 GTGCGTCAAACTGCTGCAA 59.936 52.632 3.02 0.00 37.30 4.08
572 2521 7.743749 TCGATATACTCTAGTACCACCTCTTT 58.256 38.462 0.00 0.00 32.72 2.52
575 2524 7.160726 ACTTCGATATACTCTAGTACCACCTC 58.839 42.308 0.00 0.00 32.72 3.85
585 2534 4.285517 AGACGGGGACTTCGATATACTCTA 59.714 45.833 0.00 0.00 33.01 2.43
586 2535 3.072768 AGACGGGGACTTCGATATACTCT 59.927 47.826 0.00 0.00 33.01 3.24
587 2536 3.410508 AGACGGGGACTTCGATATACTC 58.589 50.000 0.00 0.00 33.01 2.59
588 2537 3.410508 GAGACGGGGACTTCGATATACT 58.589 50.000 0.00 0.00 33.01 2.12
589 2538 2.159234 CGAGACGGGGACTTCGATATAC 59.841 54.545 0.00 0.00 33.01 1.47
647 2596 2.622436 GAGAGTATATGGCAATCCGGC 58.378 52.381 0.00 0.00 41.67 6.13
649 2598 2.093447 GGGGAGAGTATATGGCAATCCG 60.093 54.545 0.00 0.00 34.14 4.18
651 2600 3.307762 GGTGGGGAGAGTATATGGCAATC 60.308 52.174 0.00 0.00 0.00 2.67
652 2601 2.644798 GGTGGGGAGAGTATATGGCAAT 59.355 50.000 0.00 0.00 0.00 3.56
654 2603 1.729586 GGTGGGGAGAGTATATGGCA 58.270 55.000 0.00 0.00 0.00 4.92
655 2604 0.984995 GGGTGGGGAGAGTATATGGC 59.015 60.000 0.00 0.00 0.00 4.40
656 2605 1.132527 TGGGGTGGGGAGAGTATATGG 60.133 57.143 0.00 0.00 0.00 2.74
657 2606 1.978580 GTGGGGTGGGGAGAGTATATG 59.021 57.143 0.00 0.00 0.00 1.78
658 2607 1.132495 GGTGGGGTGGGGAGAGTATAT 60.132 57.143 0.00 0.00 0.00 0.86
659 2608 0.266753 GGTGGGGTGGGGAGAGTATA 59.733 60.000 0.00 0.00 0.00 1.47
660 2609 1.004361 GGTGGGGTGGGGAGAGTAT 59.996 63.158 0.00 0.00 0.00 2.12
661 2610 1.833055 ATGGTGGGGTGGGGAGAGTA 61.833 60.000 0.00 0.00 0.00 2.59
662 2611 1.833055 TATGGTGGGGTGGGGAGAGT 61.833 60.000 0.00 0.00 0.00 3.24
663 2612 1.004230 TATGGTGGGGTGGGGAGAG 59.996 63.158 0.00 0.00 0.00 3.20
664 2613 1.004230 CTATGGTGGGGTGGGGAGA 59.996 63.158 0.00 0.00 0.00 3.71
665 2614 1.307866 ACTATGGTGGGGTGGGGAG 60.308 63.158 0.00 0.00 0.00 4.30
666 2615 1.307517 GACTATGGTGGGGTGGGGA 60.308 63.158 0.00 0.00 0.00 4.81
667 2616 2.742116 CGACTATGGTGGGGTGGGG 61.742 68.421 0.00 0.00 0.00 4.96
668 2617 1.968050 GACGACTATGGTGGGGTGGG 61.968 65.000 0.00 0.00 0.00 4.61
669 2618 1.520666 GACGACTATGGTGGGGTGG 59.479 63.158 0.00 0.00 0.00 4.61
670 2619 1.141019 CGACGACTATGGTGGGGTG 59.859 63.158 0.00 0.00 0.00 4.61
671 2620 0.396695 ATCGACGACTATGGTGGGGT 60.397 55.000 0.00 0.00 0.00 4.95
672 2621 0.314302 GATCGACGACTATGGTGGGG 59.686 60.000 0.00 0.00 0.00 4.96
673 2622 1.001268 CTGATCGACGACTATGGTGGG 60.001 57.143 0.00 0.00 0.00 4.61
674 2623 1.001268 CCTGATCGACGACTATGGTGG 60.001 57.143 0.00 0.00 0.00 4.61
675 2624 1.676529 ACCTGATCGACGACTATGGTG 59.323 52.381 0.00 0.00 0.00 4.17
676 2625 1.948145 GACCTGATCGACGACTATGGT 59.052 52.381 0.00 6.53 0.00 3.55
677 2626 1.267261 GGACCTGATCGACGACTATGG 59.733 57.143 0.00 3.07 0.00 2.74
678 2627 2.222886 AGGACCTGATCGACGACTATG 58.777 52.381 0.00 0.00 0.00 2.23
679 2628 2.642154 AGGACCTGATCGACGACTAT 57.358 50.000 0.00 0.00 0.00 2.12
680 2629 3.766068 ATAGGACCTGATCGACGACTA 57.234 47.619 3.53 0.00 0.00 2.59
681 2630 2.642154 ATAGGACCTGATCGACGACT 57.358 50.000 3.53 0.00 0.00 4.18
682 2631 2.349627 CGAATAGGACCTGATCGACGAC 60.350 54.545 20.24 0.00 35.65 4.34
683 2632 1.871676 CGAATAGGACCTGATCGACGA 59.128 52.381 20.24 0.00 35.65 4.20
684 2633 1.602851 ACGAATAGGACCTGATCGACG 59.397 52.381 27.55 16.27 37.27 5.12
685 2634 2.859032 GCACGAATAGGACCTGATCGAC 60.859 54.545 27.55 18.46 37.27 4.20
686 2635 1.337071 GCACGAATAGGACCTGATCGA 59.663 52.381 27.55 0.84 37.27 3.59
687 2636 1.338337 AGCACGAATAGGACCTGATCG 59.662 52.381 22.15 22.15 39.30 3.69
688 2637 3.126831 CAAGCACGAATAGGACCTGATC 58.873 50.000 3.53 1.10 0.00 2.92
689 2638 2.766263 TCAAGCACGAATAGGACCTGAT 59.234 45.455 3.53 0.00 0.00 2.90
690 2639 2.176045 TCAAGCACGAATAGGACCTGA 58.824 47.619 3.53 0.00 0.00 3.86
691 2640 2.672961 TCAAGCACGAATAGGACCTG 57.327 50.000 3.53 0.00 0.00 4.00
692 2641 3.914426 AATCAAGCACGAATAGGACCT 57.086 42.857 0.00 0.00 0.00 3.85
693 2642 3.938963 TCAAATCAAGCACGAATAGGACC 59.061 43.478 0.00 0.00 0.00 4.46
694 2643 5.741388 ATCAAATCAAGCACGAATAGGAC 57.259 39.130 0.00 0.00 0.00 3.85
695 2644 6.404623 CCAAATCAAATCAAGCACGAATAGGA 60.405 38.462 0.00 0.00 0.00 2.94
696 2645 5.745294 CCAAATCAAATCAAGCACGAATAGG 59.255 40.000 0.00 0.00 0.00 2.57
697 2646 5.745294 CCCAAATCAAATCAAGCACGAATAG 59.255 40.000 0.00 0.00 0.00 1.73
698 2647 5.184864 ACCCAAATCAAATCAAGCACGAATA 59.815 36.000 0.00 0.00 0.00 1.75
699 2648 4.021192 ACCCAAATCAAATCAAGCACGAAT 60.021 37.500 0.00 0.00 0.00 3.34
700 2649 3.320541 ACCCAAATCAAATCAAGCACGAA 59.679 39.130 0.00 0.00 0.00 3.85
701 2650 2.890311 ACCCAAATCAAATCAAGCACGA 59.110 40.909 0.00 0.00 0.00 4.35
702 2651 3.302365 ACCCAAATCAAATCAAGCACG 57.698 42.857 0.00 0.00 0.00 5.34
703 2652 4.687483 CAGAACCCAAATCAAATCAAGCAC 59.313 41.667 0.00 0.00 0.00 4.40
704 2653 4.800249 GCAGAACCCAAATCAAATCAAGCA 60.800 41.667 0.00 0.00 0.00 3.91
705 2654 3.681417 GCAGAACCCAAATCAAATCAAGC 59.319 43.478 0.00 0.00 0.00 4.01
706 2655 5.143376 AGCAGAACCCAAATCAAATCAAG 57.857 39.130 0.00 0.00 0.00 3.02
707 2656 6.009589 TCTAGCAGAACCCAAATCAAATCAA 58.990 36.000 0.00 0.00 0.00 2.57
708 2657 5.415701 GTCTAGCAGAACCCAAATCAAATCA 59.584 40.000 0.00 0.00 0.00 2.57
709 2658 5.415701 TGTCTAGCAGAACCCAAATCAAATC 59.584 40.000 0.00 0.00 0.00 2.17
725 2674 1.613925 GGATATGGCGTCTGTCTAGCA 59.386 52.381 0.00 0.00 0.00 3.49
727 2676 1.546476 GGGGATATGGCGTCTGTCTAG 59.454 57.143 0.00 0.00 0.00 2.43
741 2690 0.325296 AGACTTGTGAGCCGGGGATA 60.325 55.000 2.18 0.00 0.00 2.59
743 2692 2.203788 AGACTTGTGAGCCGGGGA 60.204 61.111 2.18 0.00 0.00 4.81
744 2693 2.266055 GAGACTTGTGAGCCGGGG 59.734 66.667 2.18 0.00 0.00 5.73
745 2694 0.970937 TAGGAGACTTGTGAGCCGGG 60.971 60.000 2.18 0.00 43.67 5.73
746 2695 1.115467 ATAGGAGACTTGTGAGCCGG 58.885 55.000 0.00 0.00 43.67 6.13
747 2696 2.688446 TGTATAGGAGACTTGTGAGCCG 59.312 50.000 0.00 0.00 43.67 5.52
749 2698 7.600752 GGATTTATGTATAGGAGACTTGTGAGC 59.399 40.741 0.00 0.00 43.67 4.26
750 2699 8.642432 TGGATTTATGTATAGGAGACTTGTGAG 58.358 37.037 0.00 0.00 43.67 3.51
752 2701 8.424918 ACTGGATTTATGTATAGGAGACTTGTG 58.575 37.037 0.00 0.00 43.67 3.33
753 2702 8.424918 CACTGGATTTATGTATAGGAGACTTGT 58.575 37.037 0.00 0.00 43.67 3.16
754 2703 7.875041 CCACTGGATTTATGTATAGGAGACTTG 59.125 40.741 0.00 0.00 43.67 3.16
755 2704 7.016661 CCCACTGGATTTATGTATAGGAGACTT 59.983 40.741 0.00 0.00 43.67 3.01
756 2705 8.410214 CCCCACTGGATTTATGTATAGGAGACT 61.410 44.444 0.00 0.00 40.12 3.24
757 2706 6.295916 CCCCACTGGATTTATGTATAGGAGAC 60.296 46.154 0.00 0.00 35.39 3.36
759 2708 5.785423 TCCCCACTGGATTTATGTATAGGAG 59.215 44.000 0.00 0.00 38.61 3.69
760 2709 5.733000 TCCCCACTGGATTTATGTATAGGA 58.267 41.667 0.00 0.00 38.61 2.94
761 2710 5.785423 TCTCCCCACTGGATTTATGTATAGG 59.215 44.000 0.00 0.00 44.07 2.57
762 2711 6.726299 TCTCTCCCCACTGGATTTATGTATAG 59.274 42.308 0.00 0.00 44.07 1.31
763 2712 6.630131 TCTCTCCCCACTGGATTTATGTATA 58.370 40.000 0.00 0.00 44.07 1.47
764 2713 5.476983 TCTCTCCCCACTGGATTTATGTAT 58.523 41.667 0.00 0.00 44.07 2.29
768 2717 3.718956 CCTTCTCTCCCCACTGGATTTAT 59.281 47.826 0.00 0.00 44.07 1.40
769 2718 3.115390 CCTTCTCTCCCCACTGGATTTA 58.885 50.000 0.00 0.00 44.07 1.40
770 2719 1.918957 CCTTCTCTCCCCACTGGATTT 59.081 52.381 0.00 0.00 44.07 2.17
771 2720 1.589414 CCTTCTCTCCCCACTGGATT 58.411 55.000 0.00 0.00 44.07 3.01
772 2721 0.985490 GCCTTCTCTCCCCACTGGAT 60.985 60.000 0.00 0.00 44.07 3.41
774 2723 1.614824 AGCCTTCTCTCCCCACTGG 60.615 63.158 0.00 0.00 0.00 4.00
775 2724 0.617249 AGAGCCTTCTCTCCCCACTG 60.617 60.000 0.00 0.00 46.32 3.66
776 2725 1.787112 AGAGCCTTCTCTCCCCACT 59.213 57.895 0.00 0.00 46.32 4.00
777 2726 4.470764 AGAGCCTTCTCTCCCCAC 57.529 61.111 0.00 0.00 46.32 4.61
784 2733 3.596310 ACGGTTAAGAAGAGCCTTCTC 57.404 47.619 15.16 5.99 39.65 2.87
785 2734 3.830755 TGTACGGTTAAGAAGAGCCTTCT 59.169 43.478 10.59 10.59 34.29 2.85
786 2735 4.184079 TGTACGGTTAAGAAGAGCCTTC 57.816 45.455 6.79 6.79 0.00 3.46
787 2736 4.282703 TCTTGTACGGTTAAGAAGAGCCTT 59.717 41.667 5.41 0.00 30.49 4.35
788 2737 3.830755 TCTTGTACGGTTAAGAAGAGCCT 59.169 43.478 5.41 0.00 30.49 4.58
789 2738 4.184079 TCTTGTACGGTTAAGAAGAGCC 57.816 45.455 5.41 0.00 30.49 4.70
790 2739 6.476053 CCTAATCTTGTACGGTTAAGAAGAGC 59.524 42.308 10.30 0.00 36.59 4.09
791 2740 6.979238 CCCTAATCTTGTACGGTTAAGAAGAG 59.021 42.308 10.30 9.98 36.59 2.85
792 2741 6.438425 ACCCTAATCTTGTACGGTTAAGAAGA 59.562 38.462 10.30 3.10 36.59 2.87
793 2742 6.637657 ACCCTAATCTTGTACGGTTAAGAAG 58.362 40.000 10.30 5.92 36.59 2.85
794 2743 6.610075 ACCCTAATCTTGTACGGTTAAGAA 57.390 37.500 10.30 0.00 36.59 2.52
795 2744 6.610075 AACCCTAATCTTGTACGGTTAAGA 57.390 37.500 9.12 9.12 37.34 2.10
797 2746 8.133024 TCTTAACCCTAATCTTGTACGGTTAA 57.867 34.615 13.42 13.42 41.29 2.01
798 2747 7.716799 TCTTAACCCTAATCTTGTACGGTTA 57.283 36.000 0.00 0.00 35.33 2.85
799 2748 6.610075 TCTTAACCCTAATCTTGTACGGTT 57.390 37.500 3.55 3.55 37.38 4.44
800 2749 6.610075 TTCTTAACCCTAATCTTGTACGGT 57.390 37.500 0.00 0.00 0.00 4.83
801 2750 6.537660 CCTTTCTTAACCCTAATCTTGTACGG 59.462 42.308 0.00 0.00 0.00 4.02
802 2751 6.036844 GCCTTTCTTAACCCTAATCTTGTACG 59.963 42.308 0.00 0.00 0.00 3.67
803 2752 7.110810 AGCCTTTCTTAACCCTAATCTTGTAC 58.889 38.462 0.00 0.00 0.00 2.90
804 2753 7.182206 AGAGCCTTTCTTAACCCTAATCTTGTA 59.818 37.037 0.00 0.00 29.61 2.41
805 2754 6.012421 AGAGCCTTTCTTAACCCTAATCTTGT 60.012 38.462 0.00 0.00 29.61 3.16
806 2755 6.317391 CAGAGCCTTTCTTAACCCTAATCTTG 59.683 42.308 0.00 0.00 32.41 3.02
807 2756 6.418946 CAGAGCCTTTCTTAACCCTAATCTT 58.581 40.000 0.00 0.00 32.41 2.40
808 2757 5.104318 CCAGAGCCTTTCTTAACCCTAATCT 60.104 44.000 0.00 0.00 32.41 2.40
843 2792 1.336980 GGCGAGATCGGGTTCTATTCC 60.337 57.143 4.18 0.00 40.23 3.01
884 2833 5.465935 CAAACTGAGAGTCTACAGGAAGAC 58.534 45.833 18.09 0.00 45.20 3.01
931 2882 4.823989 ACAAAACAGAAGAGGAGACATTGG 59.176 41.667 0.00 0.00 0.00 3.16
935 2886 5.871396 ACTACAAAACAGAAGAGGAGACA 57.129 39.130 0.00 0.00 0.00 3.41
936 2887 5.402867 CGAACTACAAAACAGAAGAGGAGAC 59.597 44.000 0.00 0.00 0.00 3.36
938 2889 5.290386 ACGAACTACAAAACAGAAGAGGAG 58.710 41.667 0.00 0.00 0.00 3.69
969 2921 1.342672 GCAAGGGAAGGGGTCGGATA 61.343 60.000 0.00 0.00 0.00 2.59
993 2945 1.035139 GGATCCCATCGCTGCAATTT 58.965 50.000 0.00 0.00 0.00 1.82
1186 3158 2.675056 GCAGCACACTTCTGAGCGG 61.675 63.158 0.00 0.00 38.88 5.52
1200 3179 2.251818 TGATGTATAGGAGGGAGCAGC 58.748 52.381 0.00 0.00 0.00 5.25
1201 3180 3.450457 GGATGATGTATAGGAGGGAGCAG 59.550 52.174 0.00 0.00 0.00 4.24
1225 3204 1.091771 CGGATGAAGCCAATCTGCGT 61.092 55.000 0.00 0.00 36.02 5.24
1235 3214 2.250237 GCTAGCTGGCGGATGAAGC 61.250 63.158 6.22 0.00 37.20 3.86
1236 3215 0.879400 CAGCTAGCTGGCGGATGAAG 60.879 60.000 33.06 6.90 40.17 3.02
1261 3240 8.894731 GCGAGTAGATCATCCTACTATCAATAA 58.105 37.037 0.00 0.00 46.66 1.40
1293 3272 6.653020 ACTAATGGTCACAGCATCTGAATAA 58.347 36.000 0.29 0.00 34.88 1.40
1550 5325 4.026052 CACAAGGAAGGCATAGGGAAATT 58.974 43.478 0.00 0.00 0.00 1.82
1598 5373 1.374190 CTGACAAGCTCTGCACCCT 59.626 57.895 0.00 0.00 0.00 4.34
1599 5374 0.952984 GACTGACAAGCTCTGCACCC 60.953 60.000 0.00 0.00 0.00 4.61
1600 5375 0.952984 GGACTGACAAGCTCTGCACC 60.953 60.000 0.00 0.00 0.00 5.01
1601 5376 0.034616 AGGACTGACAAGCTCTGCAC 59.965 55.000 0.00 0.00 0.00 4.57
1602 5377 1.632589 TAGGACTGACAAGCTCTGCA 58.367 50.000 0.00 0.00 0.00 4.41
1603 5378 2.093764 ACATAGGACTGACAAGCTCTGC 60.094 50.000 0.00 0.00 0.00 4.26
1604 5379 3.733380 CGACATAGGACTGACAAGCTCTG 60.733 52.174 0.00 0.00 0.00 3.35
1605 5380 2.425312 CGACATAGGACTGACAAGCTCT 59.575 50.000 0.00 0.00 0.00 4.09
1610 5390 1.616374 TGCACGACATAGGACTGACAA 59.384 47.619 0.00 0.00 0.00 3.18
1719 5500 0.984230 CTGGTTCTGGAGCAACCCTA 59.016 55.000 0.81 0.00 42.51 3.53
1924 5716 5.918011 TCCGACAAAATTAGTGTGCATTTTC 59.082 36.000 0.00 0.00 31.54 2.29
2119 5913 4.401022 TCCAATATCGACTACATACGGGT 58.599 43.478 0.00 0.00 0.00 5.28
2169 5963 6.652205 ACTTTCCATTAATTACTCCCTCCA 57.348 37.500 0.00 0.00 0.00 3.86
2369 6219 5.071370 TGCCATTGCAAAATTCCAGAATTT 58.929 33.333 1.71 11.65 46.66 1.82
2387 6237 9.218440 CCTAAAACATTTTATCTTGTTTGCCAT 57.782 29.630 2.17 0.00 43.33 4.40
2388 6238 8.207545 ACCTAAAACATTTTATCTTGTTTGCCA 58.792 29.630 2.17 0.00 43.33 4.92
2440 6290 1.426251 TTTGGCAAGAGCTCCCTCCA 61.426 55.000 10.93 12.02 41.70 3.86
2442 6292 1.620822 TTTTTGGCAAGAGCTCCCTC 58.379 50.000 10.93 0.00 41.70 4.30
2443 6293 3.848353 TTTTTGGCAAGAGCTCCCT 57.152 47.368 10.93 0.00 41.70 4.20
2481 6336 9.979578 AACAAATTCATATACTCAAAAAGTGCA 57.020 25.926 0.00 0.00 39.11 4.57
2549 6409 8.134895 ACATCAAACGTGATCAAATGTTTTAGT 58.865 29.630 15.46 12.25 42.88 2.24
2566 6426 9.919348 AATTCTGAAATTTTTCAACATCAAACG 57.081 25.926 7.13 0.00 45.61 3.60
2699 6646 4.280929 TGTACCGAGACATGGAATCCATAG 59.719 45.833 15.31 11.65 43.15 2.23
2704 6651 3.322254 AGGATGTACCGAGACATGGAATC 59.678 47.826 6.85 0.00 40.18 2.52
2879 7515 6.831769 ACGAATCAGTGTAATGTCATGAAAC 58.168 36.000 0.00 0.00 0.00 2.78
2910 7546 5.179742 TCGGCAAGACAATACGTTTAACAAT 59.820 36.000 0.00 0.00 0.00 2.71
2957 7593 6.067217 ACTAATTCAAAGCCCAGATACACT 57.933 37.500 0.00 0.00 0.00 3.55
2962 7598 4.487714 TCGACTAATTCAAAGCCCAGAT 57.512 40.909 0.00 0.00 0.00 2.90
2993 7629 6.266323 CGAGAATTCAGAAATCTCGGAACTA 58.734 40.000 30.98 0.00 44.28 2.24
3312 7980 6.524734 TCAATCTTTCACCGATACTATGCAT 58.475 36.000 3.79 3.79 0.00 3.96
3319 7987 6.128282 ACACAACATCAATCTTTCACCGATAC 60.128 38.462 0.00 0.00 0.00 2.24
3478 8149 7.147312 CCAAAGAATGCTCTAACAATTTGTGA 58.853 34.615 2.13 0.00 0.00 3.58
3683 8356 7.227156 ACATCTGACAATACTCCTTTTTCTGT 58.773 34.615 0.00 0.00 0.00 3.41
3763 8436 3.444742 TGGCAACTCATCAAATAGCCTTG 59.555 43.478 0.00 0.00 41.12 3.61
3846 8519 8.746922 ACATTTTGATATACAAGCAAACAGTG 57.253 30.769 0.00 0.00 39.77 3.66
3945 8618 1.296392 CCCAGAACCATCGTGCTCA 59.704 57.895 0.00 0.00 0.00 4.26
3964 8637 4.805609 GCTGGAGAGAATAGGGGCAAATAG 60.806 50.000 0.00 0.00 0.00 1.73
3976 8649 3.706594 TCTTAATGGTCGCTGGAGAGAAT 59.293 43.478 0.00 0.00 0.00 2.40
3985 8658 7.066284 GCAATATATGGATTCTTAATGGTCGCT 59.934 37.037 0.00 0.00 0.00 4.93
4156 8839 5.981174 TGACTTTGTTATTTGCTGACGTAC 58.019 37.500 0.00 0.00 0.00 3.67
4253 8939 1.557371 TGGTGCGGATATGGTCTTTGA 59.443 47.619 0.00 0.00 0.00 2.69
4381 9068 7.391554 TGATTCTTCAGGTGAAAACCTAGATTG 59.608 37.037 0.00 0.00 38.22 2.67
4511 9201 0.538584 TACTCGAGCTACCGGTCTCA 59.461 55.000 12.40 2.96 35.54 3.27
4632 9324 5.628134 CAAACTATAAAAGACGGCTTGACC 58.372 41.667 3.03 0.00 33.79 4.02
4725 9418 3.380004 AGAAAAAGGAACGTTGTGCATGA 59.620 39.130 5.00 0.00 0.00 3.07
4854 9547 3.364441 GCGCTTGCATGGTGGTGA 61.364 61.111 0.00 0.00 38.92 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.