Multiple sequence alignment - TraesCS2D01G123800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G123800 chr2D 100.000 2222 0 0 1 2222 72490274 72488053 0.000000e+00 4104
1 TraesCS2D01G123800 chr2D 95.009 1142 30 9 1082 2222 72730029 72728914 0.000000e+00 1768
2 TraesCS2D01G123800 chr2D 92.583 391 29 0 138 528 618565865 618565475 1.490000e-156 562
3 TraesCS2D01G123800 chr2D 95.652 253 6 2 852 1100 72764124 72763873 3.440000e-108 401
4 TraesCS2D01G123800 chr2D 93.173 249 17 0 535 783 72764373 72764125 1.250000e-97 366
5 TraesCS2D01G123800 chr2D 85.252 278 32 5 265 533 646255166 646254889 6.040000e-71 278
6 TraesCS2D01G123800 chr2D 95.349 129 6 0 4 132 72535741 72535613 2.890000e-49 206
7 TraesCS2D01G123800 chr2D 94.030 134 6 2 1 133 417862617 417862749 3.740000e-48 202
8 TraesCS2D01G123800 chr2B 96.040 1692 55 8 535 2222 110038919 110037236 0.000000e+00 2743
9 TraesCS2D01G123800 chr3A 93.596 406 25 1 136 540 128305662 128305257 2.440000e-169 604
10 TraesCS2D01G123800 chr3A 83.704 405 57 6 136 533 12490206 12489804 7.490000e-100 374
11 TraesCS2D01G123800 chr4D 87.438 406 47 4 132 536 2850098 2850500 4.320000e-127 464
12 TraesCS2D01G123800 chr4D 94.615 130 5 2 4 132 8490094 8489966 1.350000e-47 200
13 TraesCS2D01G123800 chr4D 93.985 133 6 2 1 132 96243967 96244098 1.350000e-47 200
14 TraesCS2D01G123800 chr6D 87.218 399 47 4 136 533 160568926 160568531 3.360000e-123 451
15 TraesCS2D01G123800 chr6D 94.737 133 5 2 1 132 336803852 336803983 2.890000e-49 206
16 TraesCS2D01G123800 chr3B 83.375 397 59 6 140 533 354371305 354370913 5.830000e-96 361
17 TraesCS2D01G123800 chrUn 83.763 388 54 8 149 532 246174 245792 2.100000e-95 359
18 TraesCS2D01G123800 chr1A 80.720 389 64 10 149 532 313267732 313267350 2.160000e-75 292
19 TraesCS2D01G123800 chr5A 80.170 353 59 9 125 473 68809558 68809903 1.020000e-63 254
20 TraesCS2D01G123800 chr7D 94.853 136 5 2 1 135 420404828 420404962 6.220000e-51 211
21 TraesCS2D01G123800 chr7D 95.489 133 4 2 1 132 602829607 602829738 6.220000e-51 211
22 TraesCS2D01G123800 chr7D 94.737 133 5 2 1 132 161133829 161133960 2.890000e-49 206
23 TraesCS2D01G123800 chr7D 94.737 133 5 2 1 132 229257212 229257343 2.890000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G123800 chr2D 72488053 72490274 2221 True 4104.0 4104 100.0000 1 2222 1 chr2D.!!$R1 2221
1 TraesCS2D01G123800 chr2D 72728914 72730029 1115 True 1768.0 1768 95.0090 1082 2222 1 chr2D.!!$R3 1140
2 TraesCS2D01G123800 chr2D 72763873 72764373 500 True 383.5 401 94.4125 535 1100 2 chr2D.!!$R6 565
3 TraesCS2D01G123800 chr2B 110037236 110038919 1683 True 2743.0 2743 96.0400 535 2222 1 chr2B.!!$R1 1687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.035534 TCGCACCCTGCATGTTGTAT 60.036 50.0 0.0 0.0 45.36 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 1955 1.379527 GTTCTCATTTACTGCCGGGG 58.62 55.0 2.18 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.660938 ACTGCAAGGGGCCGAACC 62.661 66.667 0.00 0.00 43.89 3.62
18 19 4.659172 CTGCAAGGGGCCGAACCA 62.659 66.667 0.00 0.00 43.89 3.67
19 20 4.659172 TGCAAGGGGCCGAACCAG 62.659 66.667 0.00 0.00 43.89 4.00
20 21 4.660938 GCAAGGGGCCGAACCAGT 62.661 66.667 0.00 0.00 42.05 4.00
21 22 3.074281 CAAGGGGCCGAACCAGTA 58.926 61.111 0.00 0.00 42.05 2.74
22 23 1.607612 CAAGGGGCCGAACCAGTAT 59.392 57.895 0.00 0.00 42.05 2.12
23 24 0.834612 CAAGGGGCCGAACCAGTATA 59.165 55.000 0.00 0.00 42.05 1.47
24 25 1.210967 CAAGGGGCCGAACCAGTATAA 59.789 52.381 0.00 0.00 42.05 0.98
25 26 0.835276 AGGGGCCGAACCAGTATAAC 59.165 55.000 0.00 0.00 42.05 1.89
26 27 0.835276 GGGGCCGAACCAGTATAACT 59.165 55.000 0.00 0.00 42.05 2.24
27 28 1.202615 GGGGCCGAACCAGTATAACTC 60.203 57.143 0.00 0.00 42.05 3.01
28 29 1.761198 GGGCCGAACCAGTATAACTCT 59.239 52.381 0.00 0.00 42.05 3.24
29 30 2.223994 GGGCCGAACCAGTATAACTCTC 60.224 54.545 0.00 0.00 42.05 3.20
30 31 2.694109 GGCCGAACCAGTATAACTCTCT 59.306 50.000 0.00 0.00 38.86 3.10
31 32 3.491104 GGCCGAACCAGTATAACTCTCTG 60.491 52.174 0.00 0.00 38.86 3.35
32 33 3.130693 GCCGAACCAGTATAACTCTCTGT 59.869 47.826 0.00 0.00 0.00 3.41
33 34 4.673441 CCGAACCAGTATAACTCTCTGTG 58.327 47.826 0.00 0.00 0.00 3.66
34 35 4.158025 CCGAACCAGTATAACTCTCTGTGT 59.842 45.833 0.00 0.00 0.00 3.72
35 36 5.333513 CGAACCAGTATAACTCTCTGTGTC 58.666 45.833 0.00 0.00 0.00 3.67
36 37 5.652518 GAACCAGTATAACTCTCTGTGTCC 58.347 45.833 0.00 0.00 0.00 4.02
37 38 4.936802 ACCAGTATAACTCTCTGTGTCCT 58.063 43.478 0.00 0.00 0.00 3.85
38 39 5.334421 ACCAGTATAACTCTCTGTGTCCTT 58.666 41.667 0.00 0.00 0.00 3.36
39 40 5.780793 ACCAGTATAACTCTCTGTGTCCTTT 59.219 40.000 0.00 0.00 0.00 3.11
40 41 6.270231 ACCAGTATAACTCTCTGTGTCCTTTT 59.730 38.462 0.00 0.00 0.00 2.27
41 42 6.591834 CCAGTATAACTCTCTGTGTCCTTTTG 59.408 42.308 0.00 0.00 0.00 2.44
42 43 7.155328 CAGTATAACTCTCTGTGTCCTTTTGT 58.845 38.462 0.00 0.00 0.00 2.83
43 44 7.329717 CAGTATAACTCTCTGTGTCCTTTTGTC 59.670 40.741 0.00 0.00 0.00 3.18
44 45 3.477210 ACTCTCTGTGTCCTTTTGTCC 57.523 47.619 0.00 0.00 0.00 4.02
45 46 2.104963 ACTCTCTGTGTCCTTTTGTCCC 59.895 50.000 0.00 0.00 0.00 4.46
46 47 1.070134 TCTCTGTGTCCTTTTGTCCCG 59.930 52.381 0.00 0.00 0.00 5.14
47 48 1.070134 CTCTGTGTCCTTTTGTCCCGA 59.930 52.381 0.00 0.00 0.00 5.14
48 49 1.697432 TCTGTGTCCTTTTGTCCCGAT 59.303 47.619 0.00 0.00 0.00 4.18
49 50 2.105821 TCTGTGTCCTTTTGTCCCGATT 59.894 45.455 0.00 0.00 0.00 3.34
50 51 3.325425 TCTGTGTCCTTTTGTCCCGATTA 59.675 43.478 0.00 0.00 0.00 1.75
51 52 4.069304 CTGTGTCCTTTTGTCCCGATTAA 58.931 43.478 0.00 0.00 0.00 1.40
52 53 3.816523 TGTGTCCTTTTGTCCCGATTAAC 59.183 43.478 0.00 0.00 0.00 2.01
53 54 3.189910 GTGTCCTTTTGTCCCGATTAACC 59.810 47.826 0.00 0.00 0.00 2.85
54 55 2.751259 GTCCTTTTGTCCCGATTAACCC 59.249 50.000 0.00 0.00 0.00 4.11
55 56 2.097036 CCTTTTGTCCCGATTAACCCC 58.903 52.381 0.00 0.00 0.00 4.95
56 57 2.291346 CCTTTTGTCCCGATTAACCCCT 60.291 50.000 0.00 0.00 0.00 4.79
57 58 3.427573 CTTTTGTCCCGATTAACCCCTT 58.572 45.455 0.00 0.00 0.00 3.95
58 59 3.529216 TTTGTCCCGATTAACCCCTTT 57.471 42.857 0.00 0.00 0.00 3.11
59 60 4.654389 TTTGTCCCGATTAACCCCTTTA 57.346 40.909 0.00 0.00 0.00 1.85
60 61 4.654389 TTGTCCCGATTAACCCCTTTAA 57.346 40.909 0.00 0.00 34.08 1.52
61 62 4.224991 TGTCCCGATTAACCCCTTTAAG 57.775 45.455 0.00 0.00 33.04 1.85
62 63 2.947652 GTCCCGATTAACCCCTTTAAGC 59.052 50.000 0.00 0.00 33.04 3.09
63 64 2.848071 TCCCGATTAACCCCTTTAAGCT 59.152 45.455 0.00 0.00 34.45 3.74
64 65 4.039339 TCCCGATTAACCCCTTTAAGCTA 58.961 43.478 0.00 0.00 34.45 3.32
65 66 4.474287 TCCCGATTAACCCCTTTAAGCTAA 59.526 41.667 0.00 0.00 34.45 3.09
66 67 4.577693 CCCGATTAACCCCTTTAAGCTAAC 59.422 45.833 0.00 0.00 34.45 2.34
67 68 4.577693 CCGATTAACCCCTTTAAGCTAACC 59.422 45.833 0.00 0.00 34.45 2.85
68 69 5.434408 CGATTAACCCCTTTAAGCTAACCT 58.566 41.667 0.00 0.00 34.45 3.50
69 70 6.408434 CCGATTAACCCCTTTAAGCTAACCTA 60.408 42.308 0.00 0.00 34.45 3.08
70 71 6.704937 CGATTAACCCCTTTAAGCTAACCTAG 59.295 42.308 0.00 0.00 34.45 3.02
71 72 6.957853 TTAACCCCTTTAAGCTAACCTAGT 57.042 37.500 0.00 0.00 0.00 2.57
72 73 5.855338 AACCCCTTTAAGCTAACCTAGTT 57.145 39.130 0.00 0.00 0.00 2.24
73 74 5.175388 ACCCCTTTAAGCTAACCTAGTTG 57.825 43.478 0.00 0.00 0.00 3.16
74 75 3.945921 CCCCTTTAAGCTAACCTAGTTGC 59.054 47.826 0.00 0.00 0.00 4.17
75 76 3.621715 CCCTTTAAGCTAACCTAGTTGCG 59.378 47.826 0.00 0.00 0.00 4.85
76 77 4.501071 CCTTTAAGCTAACCTAGTTGCGA 58.499 43.478 0.00 0.00 0.00 5.10
77 78 5.116882 CCTTTAAGCTAACCTAGTTGCGAT 58.883 41.667 0.00 0.00 0.00 4.58
78 79 5.006746 CCTTTAAGCTAACCTAGTTGCGATG 59.993 44.000 0.00 0.00 0.00 3.84
79 80 2.604046 AGCTAACCTAGTTGCGATGG 57.396 50.000 0.00 0.00 0.00 3.51
80 81 0.938008 GCTAACCTAGTTGCGATGGC 59.062 55.000 0.00 0.00 40.52 4.40
81 82 1.473434 GCTAACCTAGTTGCGATGGCT 60.473 52.381 0.15 0.00 40.82 4.75
82 83 2.474816 CTAACCTAGTTGCGATGGCTC 58.525 52.381 0.15 0.00 40.82 4.70
83 84 0.107654 AACCTAGTTGCGATGGCTCC 60.108 55.000 0.15 0.00 40.82 4.70
84 85 1.264749 ACCTAGTTGCGATGGCTCCA 61.265 55.000 0.15 0.00 40.82 3.86
85 86 0.811616 CCTAGTTGCGATGGCTCCAC 60.812 60.000 0.15 0.00 40.82 4.02
86 87 1.148157 CTAGTTGCGATGGCTCCACG 61.148 60.000 0.15 0.00 40.82 4.94
87 88 1.600511 TAGTTGCGATGGCTCCACGA 61.601 55.000 0.15 0.00 40.82 4.35
88 89 2.032634 GTTGCGATGGCTCCACGAA 61.033 57.895 0.15 2.44 40.82 3.85
89 90 1.078497 TTGCGATGGCTCCACGAAT 60.078 52.632 0.15 0.00 40.82 3.34
90 91 0.176910 TTGCGATGGCTCCACGAATA 59.823 50.000 0.15 0.00 40.82 1.75
91 92 0.176910 TGCGATGGCTCCACGAATAA 59.823 50.000 0.15 0.00 40.82 1.40
92 93 0.861837 GCGATGGCTCCACGAATAAG 59.138 55.000 12.62 0.00 35.83 1.73
93 94 1.806623 GCGATGGCTCCACGAATAAGT 60.807 52.381 12.62 0.00 35.83 2.24
94 95 2.128035 CGATGGCTCCACGAATAAGTC 58.872 52.381 0.00 0.00 0.00 3.01
95 96 2.223829 CGATGGCTCCACGAATAAGTCT 60.224 50.000 0.00 0.00 0.00 3.24
96 97 3.738281 CGATGGCTCCACGAATAAGTCTT 60.738 47.826 0.00 0.00 0.00 3.01
97 98 3.695830 TGGCTCCACGAATAAGTCTTT 57.304 42.857 0.00 0.00 0.00 2.52
98 99 4.015872 TGGCTCCACGAATAAGTCTTTT 57.984 40.909 0.00 0.00 0.00 2.27
99 100 4.394729 TGGCTCCACGAATAAGTCTTTTT 58.605 39.130 0.00 0.00 0.00 1.94
100 101 4.215399 TGGCTCCACGAATAAGTCTTTTTG 59.785 41.667 0.00 0.00 0.00 2.44
101 102 4.159120 GCTCCACGAATAAGTCTTTTTGC 58.841 43.478 0.00 0.00 0.00 3.68
102 103 4.083271 GCTCCACGAATAAGTCTTTTTGCT 60.083 41.667 0.00 0.00 0.00 3.91
103 104 5.121768 GCTCCACGAATAAGTCTTTTTGCTA 59.878 40.000 0.00 0.00 0.00 3.49
104 105 6.673316 GCTCCACGAATAAGTCTTTTTGCTAG 60.673 42.308 0.00 0.00 0.00 3.42
105 106 5.642063 TCCACGAATAAGTCTTTTTGCTAGG 59.358 40.000 0.00 0.00 0.00 3.02
106 107 5.642063 CCACGAATAAGTCTTTTTGCTAGGA 59.358 40.000 0.00 0.00 0.00 2.94
107 108 6.402226 CCACGAATAAGTCTTTTTGCTAGGAC 60.402 42.308 0.00 0.00 0.00 3.85
108 109 6.147164 CACGAATAAGTCTTTTTGCTAGGACA 59.853 38.462 0.00 0.00 0.00 4.02
109 110 6.879458 ACGAATAAGTCTTTTTGCTAGGACAT 59.121 34.615 0.00 0.00 0.00 3.06
110 111 7.064728 ACGAATAAGTCTTTTTGCTAGGACATC 59.935 37.037 0.00 0.00 0.00 3.06
111 112 7.278868 CGAATAAGTCTTTTTGCTAGGACATCT 59.721 37.037 0.00 0.00 0.00 2.90
112 113 7.856145 ATAAGTCTTTTTGCTAGGACATCTG 57.144 36.000 0.00 0.00 0.00 2.90
113 114 4.006319 AGTCTTTTTGCTAGGACATCTGC 58.994 43.478 0.00 0.00 0.00 4.26
114 115 3.127721 GTCTTTTTGCTAGGACATCTGCC 59.872 47.826 0.00 0.00 0.00 4.85
115 116 1.737838 TTTTGCTAGGACATCTGCCG 58.262 50.000 0.00 0.00 0.00 5.69
116 117 0.613260 TTTGCTAGGACATCTGCCGT 59.387 50.000 0.00 0.00 0.00 5.68
117 118 0.108186 TTGCTAGGACATCTGCCGTG 60.108 55.000 0.00 0.00 0.00 4.94
118 119 0.970427 TGCTAGGACATCTGCCGTGA 60.970 55.000 0.00 0.00 0.00 4.35
119 120 0.528684 GCTAGGACATCTGCCGTGAC 60.529 60.000 0.00 0.00 0.00 3.67
120 121 0.817654 CTAGGACATCTGCCGTGACA 59.182 55.000 0.00 0.00 0.00 3.58
121 122 1.204704 CTAGGACATCTGCCGTGACAA 59.795 52.381 0.00 0.00 0.00 3.18
122 123 0.615331 AGGACATCTGCCGTGACAAT 59.385 50.000 0.00 0.00 0.00 2.71
123 124 1.003580 AGGACATCTGCCGTGACAATT 59.996 47.619 0.00 0.00 0.00 2.32
124 125 1.398390 GGACATCTGCCGTGACAATTC 59.602 52.381 0.00 0.00 0.00 2.17
125 126 1.398390 GACATCTGCCGTGACAATTCC 59.602 52.381 0.00 0.00 0.00 3.01
126 127 1.271325 ACATCTGCCGTGACAATTCCA 60.271 47.619 0.00 0.00 0.00 3.53
127 128 1.131126 CATCTGCCGTGACAATTCCAC 59.869 52.381 0.00 0.00 0.00 4.02
134 135 1.588674 GTGACAATTCCACGACACCA 58.411 50.000 0.00 0.00 0.00 4.17
135 136 2.151202 GTGACAATTCCACGACACCAT 58.849 47.619 0.00 0.00 0.00 3.55
136 137 2.095768 GTGACAATTCCACGACACCATG 60.096 50.000 0.00 0.00 0.00 3.66
137 138 0.881118 ACAATTCCACGACACCATGC 59.119 50.000 0.00 0.00 0.00 4.06
138 139 0.880441 CAATTCCACGACACCATGCA 59.120 50.000 0.00 0.00 0.00 3.96
139 140 0.881118 AATTCCACGACACCATGCAC 59.119 50.000 0.00 0.00 0.00 4.57
140 141 1.298157 ATTCCACGACACCATGCACG 61.298 55.000 0.00 0.00 0.00 5.34
141 142 3.422303 CCACGACACCATGCACGG 61.422 66.667 0.00 0.00 0.00 4.94
142 143 4.088762 CACGACACCATGCACGGC 62.089 66.667 0.00 0.00 0.00 5.68
143 144 4.617520 ACGACACCATGCACGGCA 62.618 61.111 0.00 1.01 44.86 5.69
144 145 3.353029 CGACACCATGCACGGCAA 61.353 61.111 0.00 0.00 43.62 4.52
145 146 2.562912 GACACCATGCACGGCAAG 59.437 61.111 0.00 0.00 43.62 4.01
146 147 2.203337 ACACCATGCACGGCAAGT 60.203 55.556 0.00 0.00 43.62 3.16
147 148 1.795170 GACACCATGCACGGCAAGTT 61.795 55.000 0.00 0.00 43.62 2.66
148 149 1.372004 CACCATGCACGGCAAGTTG 60.372 57.895 0.00 0.00 43.62 3.16
149 150 1.827789 ACCATGCACGGCAAGTTGT 60.828 52.632 0.00 0.00 43.62 3.32
150 151 1.372004 CCATGCACGGCAAGTTGTG 60.372 57.895 4.48 0.20 43.62 3.33
151 152 1.372004 CATGCACGGCAAGTTGTGG 60.372 57.895 4.48 0.00 43.62 4.17
162 163 4.708726 GCAAGTTGTGGCATATTCTCTT 57.291 40.909 4.48 0.00 0.00 2.85
163 164 4.666237 GCAAGTTGTGGCATATTCTCTTC 58.334 43.478 4.48 0.00 0.00 2.87
164 165 4.728882 GCAAGTTGTGGCATATTCTCTTCG 60.729 45.833 4.48 0.00 0.00 3.79
165 166 2.939103 AGTTGTGGCATATTCTCTTCGC 59.061 45.455 0.00 0.00 0.00 4.70
166 167 1.570813 TGTGGCATATTCTCTTCGCG 58.429 50.000 0.00 0.00 0.00 5.87
167 168 0.861837 GTGGCATATTCTCTTCGCGG 59.138 55.000 6.13 0.00 0.00 6.46
168 169 0.880278 TGGCATATTCTCTTCGCGGC 60.880 55.000 6.13 0.00 0.00 6.53
169 170 0.880278 GGCATATTCTCTTCGCGGCA 60.880 55.000 6.13 0.00 0.00 5.69
170 171 1.151668 GCATATTCTCTTCGCGGCAT 58.848 50.000 6.13 0.00 0.00 4.40
171 172 1.136141 GCATATTCTCTTCGCGGCATG 60.136 52.381 6.13 0.00 0.00 4.06
172 173 1.136141 CATATTCTCTTCGCGGCATGC 60.136 52.381 9.90 9.90 41.47 4.06
185 186 3.055719 CATGCGCGGTCACCCTTT 61.056 61.111 8.83 0.00 0.00 3.11
186 187 3.055719 ATGCGCGGTCACCCTTTG 61.056 61.111 8.83 0.00 0.00 2.77
189 190 2.281208 CGCGGTCACCCTTTGGAA 60.281 61.111 0.00 0.00 34.81 3.53
190 191 1.674322 CGCGGTCACCCTTTGGAAT 60.674 57.895 0.00 0.00 34.81 3.01
191 192 1.883021 GCGGTCACCCTTTGGAATG 59.117 57.895 0.00 0.00 34.81 2.67
192 193 1.883021 CGGTCACCCTTTGGAATGC 59.117 57.895 0.00 0.00 34.81 3.56
193 194 1.595093 CGGTCACCCTTTGGAATGCC 61.595 60.000 0.00 0.00 34.81 4.40
194 195 0.541764 GGTCACCCTTTGGAATGCCA 60.542 55.000 0.00 0.00 44.17 4.92
195 196 1.560505 GTCACCCTTTGGAATGCCAT 58.439 50.000 0.00 0.00 45.46 4.40
196 197 1.205417 GTCACCCTTTGGAATGCCATG 59.795 52.381 0.00 0.00 45.46 3.66
197 198 1.076841 TCACCCTTTGGAATGCCATGA 59.923 47.619 0.00 0.00 45.46 3.07
198 199 1.901159 CACCCTTTGGAATGCCATGAA 59.099 47.619 0.00 0.00 45.46 2.57
199 200 2.502538 CACCCTTTGGAATGCCATGAAT 59.497 45.455 0.00 0.00 45.46 2.57
200 201 2.502538 ACCCTTTGGAATGCCATGAATG 59.497 45.455 0.00 0.00 45.46 2.67
201 202 2.557317 CCTTTGGAATGCCATGAATGC 58.443 47.619 0.00 0.00 45.46 3.56
202 203 2.169769 CCTTTGGAATGCCATGAATGCT 59.830 45.455 0.00 0.00 45.46 3.79
203 204 3.454375 CTTTGGAATGCCATGAATGCTC 58.546 45.455 0.00 0.00 45.46 4.26
204 205 2.146920 TGGAATGCCATGAATGCTCA 57.853 45.000 0.00 0.00 39.92 4.26
205 206 2.458620 TGGAATGCCATGAATGCTCAA 58.541 42.857 0.00 0.00 39.92 3.02
206 207 2.429250 TGGAATGCCATGAATGCTCAAG 59.571 45.455 0.00 0.00 39.92 3.02
207 208 2.429610 GGAATGCCATGAATGCTCAAGT 59.570 45.455 0.00 0.00 34.49 3.16
208 209 3.490419 GGAATGCCATGAATGCTCAAGTC 60.490 47.826 0.00 0.00 34.49 3.01
209 210 2.502142 TGCCATGAATGCTCAAGTCT 57.498 45.000 0.00 0.00 34.49 3.24
210 211 2.799017 TGCCATGAATGCTCAAGTCTT 58.201 42.857 0.00 0.00 34.49 3.01
211 212 2.751259 TGCCATGAATGCTCAAGTCTTC 59.249 45.455 0.00 0.00 34.49 2.87
212 213 2.223203 GCCATGAATGCTCAAGTCTTCG 60.223 50.000 0.00 0.00 34.49 3.79
213 214 3.264947 CCATGAATGCTCAAGTCTTCGA 58.735 45.455 0.00 0.00 34.49 3.71
214 215 3.875727 CCATGAATGCTCAAGTCTTCGAT 59.124 43.478 0.00 0.00 34.49 3.59
215 216 4.260661 CCATGAATGCTCAAGTCTTCGATG 60.261 45.833 0.00 0.00 34.49 3.84
216 217 3.264947 TGAATGCTCAAGTCTTCGATGG 58.735 45.455 0.00 0.00 0.00 3.51
217 218 3.055891 TGAATGCTCAAGTCTTCGATGGA 60.056 43.478 0.00 0.00 0.00 3.41
218 219 3.834489 ATGCTCAAGTCTTCGATGGAT 57.166 42.857 0.00 0.00 0.00 3.41
219 220 3.170791 TGCTCAAGTCTTCGATGGATC 57.829 47.619 0.00 0.00 0.00 3.36
220 221 2.159043 TGCTCAAGTCTTCGATGGATCC 60.159 50.000 4.20 4.20 0.00 3.36
221 222 2.102252 GCTCAAGTCTTCGATGGATCCT 59.898 50.000 14.23 0.00 0.00 3.24
222 223 3.431486 GCTCAAGTCTTCGATGGATCCTT 60.431 47.826 14.23 6.57 0.00 3.36
223 224 4.764172 CTCAAGTCTTCGATGGATCCTTT 58.236 43.478 14.23 0.00 0.00 3.11
224 225 5.165961 TCAAGTCTTCGATGGATCCTTTT 57.834 39.130 14.23 0.00 0.00 2.27
225 226 4.937620 TCAAGTCTTCGATGGATCCTTTTG 59.062 41.667 14.23 6.48 0.00 2.44
226 227 3.878778 AGTCTTCGATGGATCCTTTTGG 58.121 45.455 14.23 0.00 42.21 3.28
227 228 2.356069 GTCTTCGATGGATCCTTTTGGC 59.644 50.000 14.23 0.00 40.12 4.52
228 229 2.026356 TCTTCGATGGATCCTTTTGGCA 60.026 45.455 14.23 0.00 40.12 4.92
229 230 2.042686 TCGATGGATCCTTTTGGCAG 57.957 50.000 14.23 0.00 40.12 4.85
230 231 1.027357 CGATGGATCCTTTTGGCAGG 58.973 55.000 14.23 0.00 40.12 4.85
232 233 2.305009 GATGGATCCTTTTGGCAGGAG 58.695 52.381 14.23 0.00 46.60 3.69
233 234 1.371467 TGGATCCTTTTGGCAGGAGA 58.629 50.000 14.23 0.00 46.60 3.71
234 235 1.283029 TGGATCCTTTTGGCAGGAGAG 59.717 52.381 14.23 0.00 46.60 3.20
235 236 1.561542 GGATCCTTTTGGCAGGAGAGA 59.438 52.381 3.84 0.00 46.60 3.10
236 237 2.637947 GATCCTTTTGGCAGGAGAGAC 58.362 52.381 0.29 0.00 46.60 3.36
237 238 1.434188 TCCTTTTGGCAGGAGAGACA 58.566 50.000 1.28 0.00 38.11 3.41
238 239 1.072331 TCCTTTTGGCAGGAGAGACAC 59.928 52.381 1.28 0.00 38.11 3.67
239 240 1.151668 CTTTTGGCAGGAGAGACACG 58.848 55.000 0.00 0.00 0.00 4.49
240 241 0.468226 TTTTGGCAGGAGAGACACGT 59.532 50.000 0.00 0.00 0.00 4.49
241 242 1.334160 TTTGGCAGGAGAGACACGTA 58.666 50.000 0.00 0.00 0.00 3.57
242 243 1.557099 TTGGCAGGAGAGACACGTAT 58.443 50.000 0.00 0.00 0.00 3.06
243 244 2.430248 TGGCAGGAGAGACACGTATA 57.570 50.000 0.00 0.00 0.00 1.47
244 245 2.022195 TGGCAGGAGAGACACGTATAC 58.978 52.381 0.00 0.00 0.00 1.47
245 246 2.022195 GGCAGGAGAGACACGTATACA 58.978 52.381 3.32 0.00 0.00 2.29
246 247 2.426024 GGCAGGAGAGACACGTATACAA 59.574 50.000 3.32 0.00 0.00 2.41
247 248 3.436496 GCAGGAGAGACACGTATACAAC 58.564 50.000 3.32 0.00 0.00 3.32
264 265 8.644318 GTATACAACGAGGTTACTGATTTGAT 57.356 34.615 0.00 0.00 0.00 2.57
265 266 7.772332 ATACAACGAGGTTACTGATTTGATC 57.228 36.000 0.00 0.00 0.00 2.92
266 267 5.547465 ACAACGAGGTTACTGATTTGATCA 58.453 37.500 0.00 0.00 37.76 2.92
277 278 3.748083 TGATTTGATCAGGCTATGGAGC 58.252 45.455 0.00 0.00 40.30 4.70
285 286 3.275338 GCTATGGAGCCTGCGTGC 61.275 66.667 0.00 0.00 43.49 5.34
286 287 2.503061 CTATGGAGCCTGCGTGCT 59.497 61.111 0.00 0.00 46.37 4.40
287 288 1.153289 CTATGGAGCCTGCGTGCTT 60.153 57.895 0.97 0.00 42.95 3.91
288 289 1.153369 TATGGAGCCTGCGTGCTTC 60.153 57.895 0.97 0.00 42.95 3.86
289 290 3.939939 TGGAGCCTGCGTGCTTCA 61.940 61.111 4.23 4.23 44.62 3.02
290 291 3.123620 GGAGCCTGCGTGCTTCAG 61.124 66.667 0.97 0.00 42.95 3.02
291 292 2.047844 GAGCCTGCGTGCTTCAGA 60.048 61.111 0.97 0.00 42.95 3.27
292 293 1.669115 GAGCCTGCGTGCTTCAGAA 60.669 57.895 0.97 0.00 42.95 3.02
293 294 1.905922 GAGCCTGCGTGCTTCAGAAC 61.906 60.000 0.97 0.00 42.95 3.01
294 295 2.253758 GCCTGCGTGCTTCAGAACA 61.254 57.895 0.00 0.00 33.54 3.18
295 296 1.580845 GCCTGCGTGCTTCAGAACAT 61.581 55.000 0.00 0.00 33.54 2.71
296 297 0.167470 CCTGCGTGCTTCAGAACATG 59.833 55.000 0.00 0.00 33.54 3.21
297 298 0.453950 CTGCGTGCTTCAGAACATGC 60.454 55.000 16.78 16.78 46.64 4.06
298 299 0.886043 TGCGTGCTTCAGAACATGCT 60.886 50.000 20.93 0.00 46.60 3.79
299 300 0.179205 GCGTGCTTCAGAACATGCTC 60.179 55.000 16.53 0.00 43.82 4.26
300 301 0.094216 CGTGCTTCAGAACATGCTCG 59.906 55.000 0.00 3.78 36.42 5.03
301 302 1.432514 GTGCTTCAGAACATGCTCGA 58.567 50.000 0.00 0.00 0.00 4.04
302 303 1.127582 GTGCTTCAGAACATGCTCGAC 59.872 52.381 0.00 0.00 0.00 4.20
303 304 1.270252 TGCTTCAGAACATGCTCGACA 60.270 47.619 0.00 0.00 0.00 4.35
304 305 1.800586 GCTTCAGAACATGCTCGACAA 59.199 47.619 0.00 0.00 0.00 3.18
305 306 2.224079 GCTTCAGAACATGCTCGACAAA 59.776 45.455 0.00 0.00 0.00 2.83
306 307 3.303990 GCTTCAGAACATGCTCGACAAAA 60.304 43.478 0.00 0.00 0.00 2.44
307 308 3.878086 TCAGAACATGCTCGACAAAAC 57.122 42.857 0.00 0.00 0.00 2.43
308 309 2.548057 TCAGAACATGCTCGACAAAACC 59.452 45.455 0.00 0.00 0.00 3.27
309 310 2.549754 CAGAACATGCTCGACAAAACCT 59.450 45.455 0.00 0.00 0.00 3.50
310 311 3.003689 CAGAACATGCTCGACAAAACCTT 59.996 43.478 0.00 0.00 0.00 3.50
311 312 3.632145 AGAACATGCTCGACAAAACCTTT 59.368 39.130 0.00 0.00 0.00 3.11
312 313 4.097892 AGAACATGCTCGACAAAACCTTTT 59.902 37.500 0.00 0.00 0.00 2.27
313 314 5.298276 AGAACATGCTCGACAAAACCTTTTA 59.702 36.000 0.00 0.00 0.00 1.52
314 315 5.108385 ACATGCTCGACAAAACCTTTTAG 57.892 39.130 0.00 0.00 0.00 1.85
315 316 3.619233 TGCTCGACAAAACCTTTTAGC 57.381 42.857 0.00 0.00 31.82 3.09
316 317 3.211045 TGCTCGACAAAACCTTTTAGCT 58.789 40.909 0.00 0.00 32.21 3.32
317 318 3.630312 TGCTCGACAAAACCTTTTAGCTT 59.370 39.130 0.00 0.00 32.21 3.74
318 319 3.975035 GCTCGACAAAACCTTTTAGCTTG 59.025 43.478 0.00 0.00 29.74 4.01
319 320 4.537015 CTCGACAAAACCTTTTAGCTTGG 58.463 43.478 0.00 0.00 0.00 3.61
320 321 3.316868 TCGACAAAACCTTTTAGCTTGGG 59.683 43.478 0.00 0.00 0.00 4.12
321 322 3.390135 GACAAAACCTTTTAGCTTGGGC 58.610 45.455 0.00 0.00 39.06 5.36
322 323 2.769095 ACAAAACCTTTTAGCTTGGGCA 59.231 40.909 0.00 0.00 41.70 5.36
323 324 3.181466 ACAAAACCTTTTAGCTTGGGCAG 60.181 43.478 0.00 0.00 41.70 4.85
324 325 2.675658 AACCTTTTAGCTTGGGCAGA 57.324 45.000 0.00 0.00 41.70 4.26
325 326 2.907458 ACCTTTTAGCTTGGGCAGAT 57.093 45.000 0.00 0.00 41.70 2.90
326 327 2.450476 ACCTTTTAGCTTGGGCAGATG 58.550 47.619 0.00 0.00 41.70 2.90
327 328 1.135721 CCTTTTAGCTTGGGCAGATGC 59.864 52.381 0.00 0.00 41.70 3.91
328 329 2.097825 CTTTTAGCTTGGGCAGATGCT 58.902 47.619 4.59 0.00 41.70 3.79
329 330 2.220653 TTTAGCTTGGGCAGATGCTT 57.779 45.000 4.59 0.00 41.70 3.91
330 331 2.220653 TTAGCTTGGGCAGATGCTTT 57.779 45.000 4.59 0.00 41.70 3.51
331 332 2.220653 TAGCTTGGGCAGATGCTTTT 57.779 45.000 4.59 0.00 41.70 2.27
332 333 0.606604 AGCTTGGGCAGATGCTTTTG 59.393 50.000 4.59 0.00 41.70 2.44
333 334 0.319405 GCTTGGGCAGATGCTTTTGT 59.681 50.000 4.59 0.00 41.70 2.83
334 335 1.270465 GCTTGGGCAGATGCTTTTGTT 60.270 47.619 4.59 0.00 41.70 2.83
335 336 2.807837 GCTTGGGCAGATGCTTTTGTTT 60.808 45.455 4.59 0.00 41.70 2.83
336 337 2.818130 TGGGCAGATGCTTTTGTTTC 57.182 45.000 4.59 0.00 41.70 2.78
337 338 2.318908 TGGGCAGATGCTTTTGTTTCT 58.681 42.857 4.59 0.00 41.70 2.52
338 339 3.495331 TGGGCAGATGCTTTTGTTTCTA 58.505 40.909 4.59 0.00 41.70 2.10
339 340 3.507233 TGGGCAGATGCTTTTGTTTCTAG 59.493 43.478 4.59 0.00 41.70 2.43
340 341 3.507622 GGGCAGATGCTTTTGTTTCTAGT 59.492 43.478 4.59 0.00 41.70 2.57
341 342 4.021981 GGGCAGATGCTTTTGTTTCTAGTT 60.022 41.667 4.59 0.00 41.70 2.24
342 343 5.183140 GGGCAGATGCTTTTGTTTCTAGTTA 59.817 40.000 4.59 0.00 41.70 2.24
343 344 6.317857 GGCAGATGCTTTTGTTTCTAGTTAG 58.682 40.000 4.59 0.00 41.70 2.34
344 345 5.797434 GCAGATGCTTTTGTTTCTAGTTAGC 59.203 40.000 0.00 0.00 38.21 3.09
345 346 6.568462 GCAGATGCTTTTGTTTCTAGTTAGCA 60.568 38.462 0.00 0.00 40.88 3.49
346 347 7.362662 CAGATGCTTTTGTTTCTAGTTAGCAA 58.637 34.615 0.00 0.00 40.14 3.91
347 348 7.536622 CAGATGCTTTTGTTTCTAGTTAGCAAG 59.463 37.037 0.00 0.00 40.14 4.01
348 349 6.935741 TGCTTTTGTTTCTAGTTAGCAAGA 57.064 33.333 0.00 0.00 34.55 3.02
349 350 7.510549 TGCTTTTGTTTCTAGTTAGCAAGAT 57.489 32.000 0.00 0.00 34.55 2.40
350 351 7.362662 TGCTTTTGTTTCTAGTTAGCAAGATG 58.637 34.615 0.00 0.00 34.55 2.90
351 352 7.228507 TGCTTTTGTTTCTAGTTAGCAAGATGA 59.771 33.333 0.00 0.00 34.55 2.92
352 353 8.076178 GCTTTTGTTTCTAGTTAGCAAGATGAA 58.924 33.333 0.00 0.00 0.00 2.57
353 354 9.387123 CTTTTGTTTCTAGTTAGCAAGATGAAC 57.613 33.333 0.00 0.00 0.00 3.18
354 355 6.706055 TGTTTCTAGTTAGCAAGATGAACG 57.294 37.500 0.00 0.00 0.00 3.95
355 356 6.220930 TGTTTCTAGTTAGCAAGATGAACGT 58.779 36.000 0.00 0.00 0.00 3.99
356 357 6.704493 TGTTTCTAGTTAGCAAGATGAACGTT 59.296 34.615 0.00 0.00 0.00 3.99
357 358 6.706055 TTCTAGTTAGCAAGATGAACGTTG 57.294 37.500 5.00 0.00 0.00 4.10
358 359 5.168569 TCTAGTTAGCAAGATGAACGTTGG 58.831 41.667 5.00 0.00 0.00 3.77
359 360 2.484264 AGTTAGCAAGATGAACGTTGGC 59.516 45.455 5.00 0.00 0.00 4.52
360 361 2.472695 TAGCAAGATGAACGTTGGCT 57.527 45.000 5.00 7.41 0.00 4.75
361 362 1.160137 AGCAAGATGAACGTTGGCTC 58.840 50.000 5.00 0.00 0.00 4.70
362 363 1.160137 GCAAGATGAACGTTGGCTCT 58.840 50.000 5.00 1.46 0.00 4.09
363 364 1.537202 GCAAGATGAACGTTGGCTCTT 59.463 47.619 5.00 8.10 0.00 2.85
364 365 2.413371 GCAAGATGAACGTTGGCTCTTC 60.413 50.000 5.00 0.00 0.00 2.87
365 366 2.100605 AGATGAACGTTGGCTCTTCC 57.899 50.000 5.00 0.00 0.00 3.46
366 367 1.625818 AGATGAACGTTGGCTCTTCCT 59.374 47.619 5.00 0.00 35.26 3.36
367 368 2.039084 AGATGAACGTTGGCTCTTCCTT 59.961 45.455 5.00 0.00 35.26 3.36
368 369 2.341846 TGAACGTTGGCTCTTCCTTT 57.658 45.000 5.00 0.00 35.26 3.11
369 370 2.218603 TGAACGTTGGCTCTTCCTTTC 58.781 47.619 5.00 0.00 35.26 2.62
370 371 1.194772 GAACGTTGGCTCTTCCTTTCG 59.805 52.381 5.00 0.00 35.26 3.46
371 372 1.228657 ACGTTGGCTCTTCCTTTCGC 61.229 55.000 0.00 0.00 35.26 4.70
372 373 1.227999 CGTTGGCTCTTCCTTTCGCA 61.228 55.000 0.00 0.00 35.26 5.10
373 374 0.238553 GTTGGCTCTTCCTTTCGCAC 59.761 55.000 0.00 0.00 35.26 5.34
374 375 0.889186 TTGGCTCTTCCTTTCGCACC 60.889 55.000 0.00 0.00 35.26 5.01
375 376 2.041115 GGCTCTTCCTTTCGCACCC 61.041 63.158 0.00 0.00 0.00 4.61
376 377 1.003233 GCTCTTCCTTTCGCACCCT 60.003 57.895 0.00 0.00 0.00 4.34
377 378 1.301677 GCTCTTCCTTTCGCACCCTG 61.302 60.000 0.00 0.00 0.00 4.45
378 379 1.301677 CTCTTCCTTTCGCACCCTGC 61.302 60.000 0.00 0.00 40.69 4.85
379 380 1.600636 CTTCCTTTCGCACCCTGCA 60.601 57.895 0.00 0.00 45.36 4.41
380 381 0.962356 CTTCCTTTCGCACCCTGCAT 60.962 55.000 0.00 0.00 45.36 3.96
381 382 1.243342 TTCCTTTCGCACCCTGCATG 61.243 55.000 0.00 0.00 45.36 4.06
382 383 1.973281 CCTTTCGCACCCTGCATGT 60.973 57.895 0.00 0.00 45.36 3.21
383 384 1.526575 CCTTTCGCACCCTGCATGTT 61.527 55.000 0.00 0.00 45.36 2.71
384 385 0.387622 CTTTCGCACCCTGCATGTTG 60.388 55.000 0.00 0.00 45.36 3.33
385 386 1.106351 TTTCGCACCCTGCATGTTGT 61.106 50.000 0.00 0.00 45.36 3.32
386 387 0.250510 TTCGCACCCTGCATGTTGTA 60.251 50.000 0.00 0.00 45.36 2.41
387 388 0.035534 TCGCACCCTGCATGTTGTAT 60.036 50.000 0.00 0.00 45.36 2.29
388 389 0.378257 CGCACCCTGCATGTTGTATC 59.622 55.000 0.00 0.00 45.36 2.24
389 390 0.740737 GCACCCTGCATGTTGTATCC 59.259 55.000 0.00 0.00 44.26 2.59
390 391 1.683011 GCACCCTGCATGTTGTATCCT 60.683 52.381 0.00 0.00 44.26 3.24
391 392 2.421388 GCACCCTGCATGTTGTATCCTA 60.421 50.000 0.00 0.00 44.26 2.94
392 393 3.884895 CACCCTGCATGTTGTATCCTAA 58.115 45.455 0.00 0.00 0.00 2.69
393 394 3.627577 CACCCTGCATGTTGTATCCTAAC 59.372 47.826 0.00 0.00 0.00 2.34
394 395 3.265737 ACCCTGCATGTTGTATCCTAACA 59.734 43.478 0.00 0.00 41.72 2.41
395 396 4.079787 ACCCTGCATGTTGTATCCTAACAT 60.080 41.667 0.00 0.00 46.54 2.71
396 397 5.131977 ACCCTGCATGTTGTATCCTAACATA 59.868 40.000 0.00 0.00 44.50 2.29
397 398 5.702670 CCCTGCATGTTGTATCCTAACATAG 59.297 44.000 0.00 0.00 44.50 2.23
398 399 5.702670 CCTGCATGTTGTATCCTAACATAGG 59.297 44.000 0.00 0.00 44.50 2.57
399 400 6.247229 TGCATGTTGTATCCTAACATAGGT 57.753 37.500 0.00 0.00 44.50 3.08
400 401 6.288294 TGCATGTTGTATCCTAACATAGGTC 58.712 40.000 0.00 0.00 44.50 3.85
401 402 6.099701 TGCATGTTGTATCCTAACATAGGTCT 59.900 38.462 0.00 0.00 44.50 3.85
402 403 6.425114 GCATGTTGTATCCTAACATAGGTCTG 59.575 42.308 0.00 0.00 44.50 3.51
403 404 6.479972 TGTTGTATCCTAACATAGGTCTGG 57.520 41.667 3.49 0.00 46.32 3.86
404 405 5.962031 TGTTGTATCCTAACATAGGTCTGGT 59.038 40.000 3.49 0.00 46.32 4.00
405 406 6.127168 TGTTGTATCCTAACATAGGTCTGGTG 60.127 42.308 3.49 0.00 46.32 4.17
406 407 5.773091 TGTATCCTAACATAGGTCTGGTGA 58.227 41.667 3.49 0.00 46.32 4.02
407 408 6.382087 TGTATCCTAACATAGGTCTGGTGAT 58.618 40.000 3.49 0.00 46.32 3.06
408 409 5.815233 ATCCTAACATAGGTCTGGTGATG 57.185 43.478 3.49 0.00 46.32 3.07
409 410 3.967326 TCCTAACATAGGTCTGGTGATGG 59.033 47.826 3.49 0.00 46.32 3.51
410 411 2.717639 AACATAGGTCTGGTGATGGC 57.282 50.000 0.00 0.00 0.00 4.40
411 412 0.839946 ACATAGGTCTGGTGATGGCC 59.160 55.000 0.00 0.00 0.00 5.36
412 413 1.135094 CATAGGTCTGGTGATGGCCT 58.865 55.000 3.32 0.00 0.00 5.19
413 414 1.135094 ATAGGTCTGGTGATGGCCTG 58.865 55.000 3.32 0.00 0.00 4.85
414 415 1.626356 TAGGTCTGGTGATGGCCTGC 61.626 60.000 3.32 0.00 0.00 4.85
415 416 2.673523 GTCTGGTGATGGCCTGCT 59.326 61.111 3.32 0.00 0.00 4.24
416 417 1.748122 GTCTGGTGATGGCCTGCTG 60.748 63.158 3.32 0.00 0.00 4.41
417 418 3.138798 CTGGTGATGGCCTGCTGC 61.139 66.667 3.32 0.00 40.16 5.25
418 419 3.931190 CTGGTGATGGCCTGCTGCA 62.931 63.158 3.32 0.88 43.89 4.41
419 420 3.446570 GGTGATGGCCTGCTGCAC 61.447 66.667 3.32 4.92 43.89 4.57
420 421 2.674033 GTGATGGCCTGCTGCACA 60.674 61.111 3.32 0.00 43.89 4.57
421 422 2.674033 TGATGGCCTGCTGCACAC 60.674 61.111 3.32 0.00 43.89 3.82
422 423 3.807538 GATGGCCTGCTGCACACG 61.808 66.667 3.32 0.00 43.89 4.49
423 424 4.648626 ATGGCCTGCTGCACACGT 62.649 61.111 3.32 0.00 43.89 4.49
424 425 4.873810 TGGCCTGCTGCACACGTT 62.874 61.111 3.32 0.00 43.89 3.99
425 426 4.332637 GGCCTGCTGCACACGTTG 62.333 66.667 0.00 0.00 43.89 4.10
426 427 3.585990 GCCTGCTGCACACGTTGT 61.586 61.111 0.00 0.00 40.77 3.32
434 435 4.230863 CACACGTTGTGCGGCGTT 62.231 61.111 9.37 0.00 41.89 4.84
435 436 2.585524 ACACGTTGTGCGGCGTTA 60.586 55.556 9.37 0.00 46.52 3.18
436 437 2.172372 ACACGTTGTGCGGCGTTAA 61.172 52.632 9.37 0.00 46.52 2.01
437 438 1.719766 CACGTTGTGCGGCGTTAAC 60.720 57.895 9.37 10.54 46.52 2.01
438 439 2.172372 ACGTTGTGCGGCGTTAACA 61.172 52.632 9.37 8.46 46.52 2.41
439 440 1.205568 CGTTGTGCGGCGTTAACAT 59.794 52.632 9.37 0.00 36.85 2.71
440 441 0.787908 CGTTGTGCGGCGTTAACATC 60.788 55.000 9.37 9.24 36.85 3.06
441 442 0.236187 GTTGTGCGGCGTTAACATCA 59.764 50.000 9.37 0.00 0.00 3.07
442 443 0.236187 TTGTGCGGCGTTAACATCAC 59.764 50.000 9.37 6.69 0.00 3.06
443 444 1.133869 GTGCGGCGTTAACATCACC 59.866 57.895 9.37 0.41 0.00 4.02
444 445 1.004320 TGCGGCGTTAACATCACCT 60.004 52.632 9.37 0.00 0.00 4.00
445 446 0.604243 TGCGGCGTTAACATCACCTT 60.604 50.000 9.37 0.00 0.00 3.50
446 447 0.096454 GCGGCGTTAACATCACCTTC 59.904 55.000 9.37 0.00 0.00 3.46
447 448 1.434555 CGGCGTTAACATCACCTTCA 58.565 50.000 6.39 0.00 0.00 3.02
448 449 2.006888 CGGCGTTAACATCACCTTCAT 58.993 47.619 6.39 0.00 0.00 2.57
449 450 2.223021 CGGCGTTAACATCACCTTCATG 60.223 50.000 6.39 0.00 0.00 3.07
450 451 2.747446 GGCGTTAACATCACCTTCATGT 59.253 45.455 6.39 0.00 35.94 3.21
451 452 3.936453 GGCGTTAACATCACCTTCATGTA 59.064 43.478 6.39 0.00 33.12 2.29
452 453 4.393680 GGCGTTAACATCACCTTCATGTAA 59.606 41.667 6.39 0.00 33.12 2.41
453 454 5.106475 GGCGTTAACATCACCTTCATGTAAA 60.106 40.000 6.39 0.00 33.12 2.01
454 455 6.404293 GGCGTTAACATCACCTTCATGTAAAT 60.404 38.462 6.39 0.00 33.12 1.40
455 456 6.468956 GCGTTAACATCACCTTCATGTAAATG 59.531 38.462 6.39 0.00 33.12 2.32
456 457 7.625395 GCGTTAACATCACCTTCATGTAAATGA 60.625 37.037 6.39 0.00 33.12 2.57
457 458 7.692291 CGTTAACATCACCTTCATGTAAATGAC 59.308 37.037 6.39 0.00 33.12 3.06
458 459 8.730680 GTTAACATCACCTTCATGTAAATGACT 58.269 33.333 0.00 0.00 33.12 3.41
459 460 7.765695 AACATCACCTTCATGTAAATGACTT 57.234 32.000 0.00 0.00 33.12 3.01
460 461 7.765695 ACATCACCTTCATGTAAATGACTTT 57.234 32.000 0.00 0.00 32.48 2.66
461 462 7.596494 ACATCACCTTCATGTAAATGACTTTG 58.404 34.615 0.00 0.00 32.48 2.77
462 463 6.573664 TCACCTTCATGTAAATGACTTTGG 57.426 37.500 0.00 0.00 0.00 3.28
463 464 6.068010 TCACCTTCATGTAAATGACTTTGGT 58.932 36.000 0.00 0.00 0.00 3.67
464 465 6.206634 TCACCTTCATGTAAATGACTTTGGTC 59.793 38.462 0.00 0.00 42.42 4.02
474 475 3.048337 TGACTTTGGTCATTCGGGTAC 57.952 47.619 0.00 0.00 46.19 3.34
475 476 2.635915 TGACTTTGGTCATTCGGGTACT 59.364 45.455 0.00 0.00 46.19 2.73
476 477 3.071892 TGACTTTGGTCATTCGGGTACTT 59.928 43.478 0.00 0.00 46.19 2.24
477 478 4.070009 GACTTTGGTCATTCGGGTACTTT 58.930 43.478 0.00 0.00 41.75 2.66
478 479 3.818773 ACTTTGGTCATTCGGGTACTTTG 59.181 43.478 0.00 0.00 0.00 2.77
479 480 1.816074 TGGTCATTCGGGTACTTTGC 58.184 50.000 0.00 0.00 0.00 3.68
480 481 1.092348 GGTCATTCGGGTACTTTGCC 58.908 55.000 0.00 0.00 0.00 4.52
481 482 1.092348 GTCATTCGGGTACTTTGCCC 58.908 55.000 0.00 0.00 42.68 5.36
487 488 3.877874 GGGTACTTTGCCCGTTTTG 57.122 52.632 0.00 0.00 36.30 2.44
488 489 1.320507 GGGTACTTTGCCCGTTTTGA 58.679 50.000 0.00 0.00 36.30 2.69
489 490 1.682323 GGGTACTTTGCCCGTTTTGAA 59.318 47.619 0.00 0.00 36.30 2.69
490 491 2.297880 GGGTACTTTGCCCGTTTTGAAT 59.702 45.455 0.00 0.00 36.30 2.57
491 492 3.313690 GGTACTTTGCCCGTTTTGAATG 58.686 45.455 0.00 0.00 0.00 2.67
492 493 1.864565 ACTTTGCCCGTTTTGAATGC 58.135 45.000 0.00 0.00 0.00 3.56
493 494 1.137872 ACTTTGCCCGTTTTGAATGCA 59.862 42.857 0.00 0.00 0.00 3.96
494 495 2.224257 ACTTTGCCCGTTTTGAATGCAT 60.224 40.909 0.00 0.00 0.00 3.96
495 496 3.006323 ACTTTGCCCGTTTTGAATGCATA 59.994 39.130 0.00 0.00 0.00 3.14
496 497 3.667497 TTGCCCGTTTTGAATGCATAA 57.333 38.095 0.00 0.00 0.00 1.90
497 498 3.229276 TGCCCGTTTTGAATGCATAAG 57.771 42.857 0.00 0.00 0.00 1.73
498 499 2.094286 TGCCCGTTTTGAATGCATAAGG 60.094 45.455 0.00 0.00 0.00 2.69
499 500 2.094234 GCCCGTTTTGAATGCATAAGGT 60.094 45.455 0.00 0.00 0.00 3.50
500 501 3.129638 GCCCGTTTTGAATGCATAAGGTA 59.870 43.478 0.00 0.00 0.00 3.08
501 502 4.733523 GCCCGTTTTGAATGCATAAGGTAG 60.734 45.833 0.00 0.00 0.00 3.18
502 503 4.638421 CCCGTTTTGAATGCATAAGGTAGA 59.362 41.667 0.00 0.00 0.00 2.59
503 504 5.124776 CCCGTTTTGAATGCATAAGGTAGAA 59.875 40.000 0.00 0.00 0.00 2.10
504 505 6.349777 CCCGTTTTGAATGCATAAGGTAGAAA 60.350 38.462 0.00 0.00 0.00 2.52
505 506 7.257722 CCGTTTTGAATGCATAAGGTAGAAAT 58.742 34.615 0.00 0.00 0.00 2.17
506 507 7.759433 CCGTTTTGAATGCATAAGGTAGAAATT 59.241 33.333 0.00 0.00 0.00 1.82
507 508 8.586273 CGTTTTGAATGCATAAGGTAGAAATTG 58.414 33.333 0.00 0.00 0.00 2.32
508 509 8.382875 GTTTTGAATGCATAAGGTAGAAATTGC 58.617 33.333 0.00 0.00 0.00 3.56
509 510 7.408756 TTGAATGCATAAGGTAGAAATTGCT 57.591 32.000 0.00 0.00 0.00 3.91
510 511 7.031226 TGAATGCATAAGGTAGAAATTGCTC 57.969 36.000 0.00 0.00 0.00 4.26
511 512 6.830324 TGAATGCATAAGGTAGAAATTGCTCT 59.170 34.615 0.00 0.00 0.00 4.09
512 513 7.992608 TGAATGCATAAGGTAGAAATTGCTCTA 59.007 33.333 0.00 0.00 0.00 2.43
513 514 7.736447 ATGCATAAGGTAGAAATTGCTCTAC 57.264 36.000 0.00 8.29 44.79 2.59
559 560 5.990120 ATTCTTGCAAGCTATTTCCAGTT 57.010 34.783 21.99 0.00 0.00 3.16
593 594 4.141711 ACTGCTTCCTTACAGTCTGTTTGA 60.142 41.667 11.54 2.90 43.55 2.69
595 596 4.756642 TGCTTCCTTACAGTCTGTTTGATG 59.243 41.667 11.54 8.70 0.00 3.07
779 780 2.632996 CAGTGAAAGGGTCCTGTACAGA 59.367 50.000 24.68 7.64 0.00 3.41
924 926 8.846943 AACATGTTCTGACTGTACATCATAAA 57.153 30.769 4.92 0.00 35.02 1.40
927 929 9.926751 CATGTTCTGACTGTACATCATAAATTC 57.073 33.333 0.00 0.00 35.02 2.17
935 937 7.978982 ACTGTACATCATAAATTCAGCAGTTC 58.021 34.615 0.00 0.00 30.50 3.01
982 984 1.068472 CGCTAGTGACGGTTCTCTGTT 60.068 52.381 0.00 0.00 32.75 3.16
1161 1167 5.285401 TGTGGGGAGGAAGTGAAGATTATA 58.715 41.667 0.00 0.00 0.00 0.98
1250 1257 6.824704 TCTTATGTTTTCTTACCCCAATACCG 59.175 38.462 0.00 0.00 0.00 4.02
1252 1259 5.182169 TGTTTTCTTACCCCAATACCGAT 57.818 39.130 0.00 0.00 0.00 4.18
1443 1450 2.848887 CAGTAACTCGTCGCATTCTCAG 59.151 50.000 0.00 0.00 0.00 3.35
1444 1451 2.747989 AGTAACTCGTCGCATTCTCAGA 59.252 45.455 0.00 0.00 0.00 3.27
1575 1582 1.707989 TGGTCCTGCCAATTAGGTTGA 59.292 47.619 0.00 0.00 45.94 3.18
1681 1688 4.519906 AACCGTCCATCCTAAAATCCAT 57.480 40.909 0.00 0.00 0.00 3.41
1857 1867 2.568623 TTCTTCAGTTTCTGCCCCTC 57.431 50.000 0.00 0.00 0.00 4.30
1949 1959 0.694196 TTCCCCTCAAACTAACCCCG 59.306 55.000 0.00 0.00 0.00 5.73
2012 2022 0.627986 CTGGGGGCTCCTCATTTCTT 59.372 55.000 4.32 0.00 36.20 2.52
2042 2052 4.838904 ACAGGACCCATTACTTCCTAAC 57.161 45.455 0.00 0.00 37.69 2.34
2117 2127 6.389091 TGGTTGAGCATAGCTAAAACAAATG 58.611 36.000 4.38 0.00 43.02 2.32
2188 2198 1.340114 GGGGTTGAGCTAAGAACCAGG 60.340 57.143 18.72 0.00 43.07 4.45
2189 2199 1.628846 GGGTTGAGCTAAGAACCAGGA 59.371 52.381 18.72 0.00 43.07 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.659172 TGGTTCGGCCCCTTGCAG 62.659 66.667 0.00 0.00 43.89 4.41
2 3 4.659172 CTGGTTCGGCCCCTTGCA 62.659 66.667 0.00 0.00 43.89 4.08
3 4 2.552231 ATACTGGTTCGGCCCCTTGC 62.552 60.000 0.00 0.00 40.16 4.01
7 8 0.835276 AGTTATACTGGTTCGGCCCC 59.165 55.000 0.00 0.00 36.04 5.80
8 9 1.761198 AGAGTTATACTGGTTCGGCCC 59.239 52.381 0.00 0.00 36.04 5.80
9 10 2.694109 AGAGAGTTATACTGGTTCGGCC 59.306 50.000 0.00 0.00 37.90 6.13
10 11 3.130693 ACAGAGAGTTATACTGGTTCGGC 59.869 47.826 0.00 0.00 36.17 5.54
11 12 4.158025 ACACAGAGAGTTATACTGGTTCGG 59.842 45.833 0.00 0.00 36.17 4.30
12 13 5.312120 ACACAGAGAGTTATACTGGTTCG 57.688 43.478 0.00 0.00 36.17 3.95
13 14 5.419471 AGGACACAGAGAGTTATACTGGTTC 59.581 44.000 0.00 0.00 36.17 3.62
14 15 5.334421 AGGACACAGAGAGTTATACTGGTT 58.666 41.667 0.00 0.00 36.17 3.67
15 16 4.936802 AGGACACAGAGAGTTATACTGGT 58.063 43.478 0.00 0.00 36.17 4.00
16 17 5.923733 AAGGACACAGAGAGTTATACTGG 57.076 43.478 0.00 0.00 36.17 4.00
17 18 7.155328 ACAAAAGGACACAGAGAGTTATACTG 58.845 38.462 0.00 0.00 37.62 2.74
18 19 7.304497 ACAAAAGGACACAGAGAGTTATACT 57.696 36.000 0.00 0.00 0.00 2.12
19 20 6.590677 GGACAAAAGGACACAGAGAGTTATAC 59.409 42.308 0.00 0.00 0.00 1.47
20 21 6.295688 GGGACAAAAGGACACAGAGAGTTATA 60.296 42.308 0.00 0.00 0.00 0.98
21 22 5.513267 GGGACAAAAGGACACAGAGAGTTAT 60.513 44.000 0.00 0.00 0.00 1.89
22 23 4.202326 GGGACAAAAGGACACAGAGAGTTA 60.202 45.833 0.00 0.00 0.00 2.24
23 24 3.433740 GGGACAAAAGGACACAGAGAGTT 60.434 47.826 0.00 0.00 0.00 3.01
24 25 2.104963 GGGACAAAAGGACACAGAGAGT 59.895 50.000 0.00 0.00 0.00 3.24
25 26 2.772287 GGGACAAAAGGACACAGAGAG 58.228 52.381 0.00 0.00 0.00 3.20
26 27 1.070134 CGGGACAAAAGGACACAGAGA 59.930 52.381 0.00 0.00 0.00 3.10
27 28 1.070134 TCGGGACAAAAGGACACAGAG 59.930 52.381 0.00 0.00 0.00 3.35
28 29 1.124780 TCGGGACAAAAGGACACAGA 58.875 50.000 0.00 0.00 0.00 3.41
29 30 2.185004 ATCGGGACAAAAGGACACAG 57.815 50.000 0.00 0.00 0.00 3.66
30 31 2.649531 AATCGGGACAAAAGGACACA 57.350 45.000 0.00 0.00 0.00 3.72
31 32 3.189910 GGTTAATCGGGACAAAAGGACAC 59.810 47.826 0.00 0.00 0.00 3.67
32 33 3.414269 GGTTAATCGGGACAAAAGGACA 58.586 45.455 0.00 0.00 0.00 4.02
33 34 2.751259 GGGTTAATCGGGACAAAAGGAC 59.249 50.000 0.00 0.00 0.00 3.85
34 35 2.291089 GGGGTTAATCGGGACAAAAGGA 60.291 50.000 0.00 0.00 0.00 3.36
35 36 2.097036 GGGGTTAATCGGGACAAAAGG 58.903 52.381 0.00 0.00 0.00 3.11
36 37 3.081710 AGGGGTTAATCGGGACAAAAG 57.918 47.619 0.00 0.00 0.00 2.27
37 38 3.529216 AAGGGGTTAATCGGGACAAAA 57.471 42.857 0.00 0.00 0.00 2.44
38 39 3.529216 AAAGGGGTTAATCGGGACAAA 57.471 42.857 0.00 0.00 0.00 2.83
39 40 4.591929 CTTAAAGGGGTTAATCGGGACAA 58.408 43.478 0.00 0.00 31.22 3.18
40 41 3.622953 GCTTAAAGGGGTTAATCGGGACA 60.623 47.826 0.00 0.00 31.22 4.02
41 42 2.947652 GCTTAAAGGGGTTAATCGGGAC 59.052 50.000 0.00 0.00 31.22 4.46
42 43 2.848071 AGCTTAAAGGGGTTAATCGGGA 59.152 45.455 0.00 0.00 31.22 5.14
43 44 3.292492 AGCTTAAAGGGGTTAATCGGG 57.708 47.619 0.00 0.00 31.22 5.14
44 45 4.577693 GGTTAGCTTAAAGGGGTTAATCGG 59.422 45.833 0.00 0.00 31.22 4.18
45 46 5.434408 AGGTTAGCTTAAAGGGGTTAATCG 58.566 41.667 0.00 0.00 31.22 3.34
46 47 7.571919 ACTAGGTTAGCTTAAAGGGGTTAATC 58.428 38.462 0.00 0.00 31.22 1.75
47 48 7.520797 ACTAGGTTAGCTTAAAGGGGTTAAT 57.479 36.000 0.00 0.00 31.22 1.40
48 49 6.957853 ACTAGGTTAGCTTAAAGGGGTTAA 57.042 37.500 0.00 0.00 0.00 2.01
49 50 6.714278 CAACTAGGTTAGCTTAAAGGGGTTA 58.286 40.000 0.00 0.00 0.00 2.85
50 51 5.567430 CAACTAGGTTAGCTTAAAGGGGTT 58.433 41.667 0.00 0.00 0.00 4.11
51 52 4.567116 GCAACTAGGTTAGCTTAAAGGGGT 60.567 45.833 0.00 0.00 0.00 4.95
52 53 3.945921 GCAACTAGGTTAGCTTAAAGGGG 59.054 47.826 0.00 0.00 0.00 4.79
53 54 3.621715 CGCAACTAGGTTAGCTTAAAGGG 59.378 47.826 0.00 0.00 0.00 3.95
54 55 4.501071 TCGCAACTAGGTTAGCTTAAAGG 58.499 43.478 0.00 0.00 0.00 3.11
55 56 5.006746 CCATCGCAACTAGGTTAGCTTAAAG 59.993 44.000 0.00 0.00 0.00 1.85
56 57 4.873827 CCATCGCAACTAGGTTAGCTTAAA 59.126 41.667 0.00 0.00 0.00 1.52
57 58 4.439057 CCATCGCAACTAGGTTAGCTTAA 58.561 43.478 0.00 0.00 0.00 1.85
58 59 3.740141 GCCATCGCAACTAGGTTAGCTTA 60.740 47.826 0.00 0.00 34.03 3.09
59 60 2.906354 CCATCGCAACTAGGTTAGCTT 58.094 47.619 0.00 0.00 0.00 3.74
60 61 1.473434 GCCATCGCAACTAGGTTAGCT 60.473 52.381 0.00 0.00 34.03 3.32
61 62 0.938008 GCCATCGCAACTAGGTTAGC 59.062 55.000 0.00 0.00 34.03 3.09
62 63 2.474816 GAGCCATCGCAACTAGGTTAG 58.525 52.381 0.00 0.00 37.52 2.34
63 64 1.138266 GGAGCCATCGCAACTAGGTTA 59.862 52.381 0.00 0.00 37.52 2.85
64 65 0.107654 GGAGCCATCGCAACTAGGTT 60.108 55.000 0.00 0.00 37.52 3.50
65 66 1.264749 TGGAGCCATCGCAACTAGGT 61.265 55.000 0.00 0.00 37.52 3.08
66 67 0.811616 GTGGAGCCATCGCAACTAGG 60.812 60.000 0.00 0.00 37.52 3.02
67 68 1.148157 CGTGGAGCCATCGCAACTAG 61.148 60.000 0.00 0.00 37.52 2.57
68 69 1.153647 CGTGGAGCCATCGCAACTA 60.154 57.895 0.00 0.00 37.52 2.24
69 70 2.434884 CGTGGAGCCATCGCAACT 60.435 61.111 0.00 0.00 37.52 3.16
70 71 1.369091 ATTCGTGGAGCCATCGCAAC 61.369 55.000 0.00 0.00 37.52 4.17
71 72 0.176910 TATTCGTGGAGCCATCGCAA 59.823 50.000 0.00 0.00 37.52 4.85
72 73 0.176910 TTATTCGTGGAGCCATCGCA 59.823 50.000 0.00 0.00 37.52 5.10
73 74 0.861837 CTTATTCGTGGAGCCATCGC 59.138 55.000 0.00 0.00 0.00 4.58
74 75 2.128035 GACTTATTCGTGGAGCCATCG 58.872 52.381 0.00 0.00 0.00 3.84
75 76 3.460857 AGACTTATTCGTGGAGCCATC 57.539 47.619 0.00 0.00 0.00 3.51
76 77 3.914426 AAGACTTATTCGTGGAGCCAT 57.086 42.857 0.00 0.00 0.00 4.40
77 78 3.695830 AAAGACTTATTCGTGGAGCCA 57.304 42.857 0.00 0.00 0.00 4.75
78 79 4.723248 CAAAAAGACTTATTCGTGGAGCC 58.277 43.478 0.00 0.00 0.00 4.70
79 80 4.083271 AGCAAAAAGACTTATTCGTGGAGC 60.083 41.667 0.00 0.00 0.00 4.70
80 81 5.613358 AGCAAAAAGACTTATTCGTGGAG 57.387 39.130 0.00 0.00 0.00 3.86
81 82 5.642063 CCTAGCAAAAAGACTTATTCGTGGA 59.358 40.000 0.00 0.00 0.00 4.02
82 83 5.642063 TCCTAGCAAAAAGACTTATTCGTGG 59.358 40.000 0.00 0.00 0.00 4.94
83 84 6.147164 TGTCCTAGCAAAAAGACTTATTCGTG 59.853 38.462 0.00 0.00 0.00 4.35
84 85 6.228258 TGTCCTAGCAAAAAGACTTATTCGT 58.772 36.000 0.00 0.00 0.00 3.85
85 86 6.721571 TGTCCTAGCAAAAAGACTTATTCG 57.278 37.500 0.00 0.00 0.00 3.34
86 87 8.394121 CAGATGTCCTAGCAAAAAGACTTATTC 58.606 37.037 0.00 0.00 0.00 1.75
87 88 7.148171 GCAGATGTCCTAGCAAAAAGACTTATT 60.148 37.037 0.00 0.00 0.00 1.40
88 89 6.317391 GCAGATGTCCTAGCAAAAAGACTTAT 59.683 38.462 0.00 0.00 0.00 1.73
89 90 5.643777 GCAGATGTCCTAGCAAAAAGACTTA 59.356 40.000 0.00 0.00 0.00 2.24
90 91 4.457257 GCAGATGTCCTAGCAAAAAGACTT 59.543 41.667 0.00 0.00 0.00 3.01
91 92 4.006319 GCAGATGTCCTAGCAAAAAGACT 58.994 43.478 0.00 0.00 0.00 3.24
92 93 3.127721 GGCAGATGTCCTAGCAAAAAGAC 59.872 47.826 0.00 0.00 0.00 3.01
93 94 3.347216 GGCAGATGTCCTAGCAAAAAGA 58.653 45.455 0.00 0.00 0.00 2.52
94 95 2.096496 CGGCAGATGTCCTAGCAAAAAG 59.904 50.000 0.00 0.00 0.00 2.27
95 96 2.083774 CGGCAGATGTCCTAGCAAAAA 58.916 47.619 0.00 0.00 0.00 1.94
96 97 1.003118 ACGGCAGATGTCCTAGCAAAA 59.997 47.619 0.00 0.00 0.00 2.44
97 98 0.613260 ACGGCAGATGTCCTAGCAAA 59.387 50.000 0.00 0.00 0.00 3.68
98 99 0.108186 CACGGCAGATGTCCTAGCAA 60.108 55.000 0.00 0.00 0.00 3.91
99 100 0.970427 TCACGGCAGATGTCCTAGCA 60.970 55.000 0.00 0.00 0.00 3.49
100 101 0.528684 GTCACGGCAGATGTCCTAGC 60.529 60.000 0.00 0.00 0.00 3.42
101 102 0.817654 TGTCACGGCAGATGTCCTAG 59.182 55.000 0.00 0.00 0.00 3.02
102 103 1.262417 TTGTCACGGCAGATGTCCTA 58.738 50.000 0.00 0.00 0.00 2.94
103 104 0.615331 ATTGTCACGGCAGATGTCCT 59.385 50.000 0.00 0.00 0.00 3.85
104 105 1.398390 GAATTGTCACGGCAGATGTCC 59.602 52.381 0.00 0.00 0.00 4.02
105 106 1.398390 GGAATTGTCACGGCAGATGTC 59.602 52.381 0.00 0.00 0.00 3.06
106 107 1.271325 TGGAATTGTCACGGCAGATGT 60.271 47.619 0.00 0.00 0.00 3.06
107 108 1.131126 GTGGAATTGTCACGGCAGATG 59.869 52.381 0.00 0.00 0.00 2.90
108 109 1.453155 GTGGAATTGTCACGGCAGAT 58.547 50.000 0.00 0.00 0.00 2.90
109 110 2.927004 GTGGAATTGTCACGGCAGA 58.073 52.632 0.00 0.00 0.00 4.26
115 116 1.588674 TGGTGTCGTGGAATTGTCAC 58.411 50.000 0.00 0.00 0.00 3.67
116 117 2.150390 CATGGTGTCGTGGAATTGTCA 58.850 47.619 0.00 0.00 0.00 3.58
117 118 1.135689 GCATGGTGTCGTGGAATTGTC 60.136 52.381 0.00 0.00 0.00 3.18
118 119 0.881118 GCATGGTGTCGTGGAATTGT 59.119 50.000 0.00 0.00 0.00 2.71
119 120 0.880441 TGCATGGTGTCGTGGAATTG 59.120 50.000 0.00 0.00 0.00 2.32
120 121 0.881118 GTGCATGGTGTCGTGGAATT 59.119 50.000 0.00 0.00 32.08 2.17
121 122 1.298157 CGTGCATGGTGTCGTGGAAT 61.298 55.000 0.00 0.00 32.08 3.01
122 123 1.958715 CGTGCATGGTGTCGTGGAA 60.959 57.895 0.00 0.00 32.08 3.53
123 124 2.356913 CGTGCATGGTGTCGTGGA 60.357 61.111 0.00 0.00 0.00 4.02
124 125 3.422303 CCGTGCATGGTGTCGTGG 61.422 66.667 17.42 0.00 0.00 4.94
125 126 4.088762 GCCGTGCATGGTGTCGTG 62.089 66.667 25.67 0.00 0.00 4.35
126 127 4.617520 TGCCGTGCATGGTGTCGT 62.618 61.111 25.67 0.00 31.71 4.34
127 128 3.313007 CTTGCCGTGCATGGTGTCG 62.313 63.158 25.67 5.97 38.76 4.35
128 129 1.795170 AACTTGCCGTGCATGGTGTC 61.795 55.000 25.67 10.28 38.76 3.67
129 130 1.827789 AACTTGCCGTGCATGGTGT 60.828 52.632 25.67 18.21 38.76 4.16
130 131 1.372004 CAACTTGCCGTGCATGGTG 60.372 57.895 25.67 17.61 43.00 4.17
131 132 1.827789 ACAACTTGCCGTGCATGGT 60.828 52.632 25.67 3.17 38.76 3.55
132 133 1.372004 CACAACTTGCCGTGCATGG 60.372 57.895 21.33 21.33 38.76 3.66
133 134 1.372004 CCACAACTTGCCGTGCATG 60.372 57.895 0.00 0.00 38.76 4.06
134 135 3.041701 CCACAACTTGCCGTGCAT 58.958 55.556 0.00 0.00 38.76 3.96
135 136 3.898509 GCCACAACTTGCCGTGCA 61.899 61.111 0.00 0.00 36.47 4.57
136 137 1.861542 TATGCCACAACTTGCCGTGC 61.862 55.000 0.00 0.00 0.00 5.34
137 138 0.810648 ATATGCCACAACTTGCCGTG 59.189 50.000 0.00 0.00 0.00 4.94
138 139 1.472480 GAATATGCCACAACTTGCCGT 59.528 47.619 0.00 0.00 0.00 5.68
139 140 1.745087 AGAATATGCCACAACTTGCCG 59.255 47.619 0.00 0.00 0.00 5.69
140 141 3.019564 AGAGAATATGCCACAACTTGCC 58.980 45.455 0.00 0.00 0.00 4.52
141 142 4.666237 GAAGAGAATATGCCACAACTTGC 58.334 43.478 0.00 0.00 0.00 4.01
142 143 4.728882 GCGAAGAGAATATGCCACAACTTG 60.729 45.833 0.00 0.00 0.00 3.16
143 144 3.375299 GCGAAGAGAATATGCCACAACTT 59.625 43.478 0.00 0.00 0.00 2.66
144 145 2.939103 GCGAAGAGAATATGCCACAACT 59.061 45.455 0.00 0.00 0.00 3.16
145 146 2.285834 CGCGAAGAGAATATGCCACAAC 60.286 50.000 0.00 0.00 0.00 3.32
146 147 1.933181 CGCGAAGAGAATATGCCACAA 59.067 47.619 0.00 0.00 0.00 3.33
147 148 1.570813 CGCGAAGAGAATATGCCACA 58.429 50.000 0.00 0.00 0.00 4.17
148 149 0.861837 CCGCGAAGAGAATATGCCAC 59.138 55.000 8.23 0.00 0.00 5.01
149 150 0.880278 GCCGCGAAGAGAATATGCCA 60.880 55.000 8.23 0.00 0.00 4.92
150 151 0.880278 TGCCGCGAAGAGAATATGCC 60.880 55.000 8.23 0.00 0.00 4.40
151 152 1.136141 CATGCCGCGAAGAGAATATGC 60.136 52.381 8.23 0.00 0.00 3.14
152 153 1.136141 GCATGCCGCGAAGAGAATATG 60.136 52.381 8.23 1.27 0.00 1.78
153 154 1.151668 GCATGCCGCGAAGAGAATAT 58.848 50.000 8.23 0.00 0.00 1.28
154 155 2.605094 GCATGCCGCGAAGAGAATA 58.395 52.632 8.23 0.00 0.00 1.75
155 156 3.414272 GCATGCCGCGAAGAGAAT 58.586 55.556 8.23 0.00 0.00 2.40
175 176 0.541764 TGGCATTCCAAAGGGTGACC 60.542 55.000 0.00 0.00 46.25 4.02
176 177 3.050089 TGGCATTCCAAAGGGTGAC 57.950 52.632 0.00 0.00 39.99 3.67
186 187 2.429610 ACTTGAGCATTCATGGCATTCC 59.570 45.455 0.00 0.00 33.88 3.01
187 188 3.380637 AGACTTGAGCATTCATGGCATTC 59.619 43.478 0.00 0.00 38.61 2.67
188 189 3.362706 AGACTTGAGCATTCATGGCATT 58.637 40.909 0.00 0.00 38.61 3.56
189 190 3.014304 AGACTTGAGCATTCATGGCAT 57.986 42.857 0.00 0.00 38.61 4.40
190 191 2.502142 AGACTTGAGCATTCATGGCA 57.498 45.000 0.00 0.00 38.61 4.92
191 192 2.223203 CGAAGACTTGAGCATTCATGGC 60.223 50.000 0.00 0.00 36.89 4.40
192 193 3.264947 TCGAAGACTTGAGCATTCATGG 58.735 45.455 0.00 0.00 33.88 3.66
193 194 4.260661 CCATCGAAGACTTGAGCATTCATG 60.261 45.833 0.00 0.00 42.51 3.07
194 195 3.875727 CCATCGAAGACTTGAGCATTCAT 59.124 43.478 0.00 0.00 42.51 2.57
195 196 3.055891 TCCATCGAAGACTTGAGCATTCA 60.056 43.478 0.00 0.00 42.51 2.57
196 197 3.525537 TCCATCGAAGACTTGAGCATTC 58.474 45.455 0.00 0.00 42.51 2.67
197 198 3.616956 TCCATCGAAGACTTGAGCATT 57.383 42.857 0.00 0.00 42.51 3.56
198 199 3.494048 GGATCCATCGAAGACTTGAGCAT 60.494 47.826 6.95 0.00 42.51 3.79
199 200 2.159043 GGATCCATCGAAGACTTGAGCA 60.159 50.000 6.95 0.00 42.51 4.26
200 201 2.102252 AGGATCCATCGAAGACTTGAGC 59.898 50.000 15.82 0.00 42.51 4.26
201 202 4.399004 AAGGATCCATCGAAGACTTGAG 57.601 45.455 15.82 0.00 42.51 3.02
202 203 4.826274 AAAGGATCCATCGAAGACTTGA 57.174 40.909 15.82 0.00 42.51 3.02
203 204 4.095483 CCAAAAGGATCCATCGAAGACTTG 59.905 45.833 15.82 1.45 42.51 3.16
204 205 4.265073 CCAAAAGGATCCATCGAAGACTT 58.735 43.478 15.82 0.00 42.51 3.01
205 206 3.878778 CCAAAAGGATCCATCGAAGACT 58.121 45.455 15.82 0.00 42.51 3.24
206 207 2.356069 GCCAAAAGGATCCATCGAAGAC 59.644 50.000 15.82 0.00 42.51 3.01
207 208 2.026356 TGCCAAAAGGATCCATCGAAGA 60.026 45.455 15.82 0.00 45.75 2.87
208 209 2.357009 CTGCCAAAAGGATCCATCGAAG 59.643 50.000 15.82 0.00 0.00 3.79
209 210 2.368439 CTGCCAAAAGGATCCATCGAA 58.632 47.619 15.82 0.00 0.00 3.71
210 211 1.408683 CCTGCCAAAAGGATCCATCGA 60.409 52.381 15.82 0.00 40.02 3.59
211 212 1.027357 CCTGCCAAAAGGATCCATCG 58.973 55.000 15.82 0.00 40.02 3.84
212 213 2.092212 TCTCCTGCCAAAAGGATCCATC 60.092 50.000 15.82 0.00 45.41 3.51
213 214 1.925255 TCTCCTGCCAAAAGGATCCAT 59.075 47.619 15.82 0.00 45.41 3.41
214 215 1.283029 CTCTCCTGCCAAAAGGATCCA 59.717 52.381 15.82 0.00 45.41 3.41
215 216 1.561542 TCTCTCCTGCCAAAAGGATCC 59.438 52.381 2.48 2.48 45.41 3.36
216 217 2.026822 TGTCTCTCCTGCCAAAAGGATC 60.027 50.000 0.00 0.00 45.41 3.36
217 218 1.988107 TGTCTCTCCTGCCAAAAGGAT 59.012 47.619 0.00 0.00 45.41 3.24
218 219 1.072331 GTGTCTCTCCTGCCAAAAGGA 59.928 52.381 0.00 0.00 44.35 3.36
219 220 1.528129 GTGTCTCTCCTGCCAAAAGG 58.472 55.000 0.00 0.00 38.84 3.11
220 221 1.151668 CGTGTCTCTCCTGCCAAAAG 58.848 55.000 0.00 0.00 0.00 2.27
221 222 0.468226 ACGTGTCTCTCCTGCCAAAA 59.532 50.000 0.00 0.00 0.00 2.44
222 223 1.334160 TACGTGTCTCTCCTGCCAAA 58.666 50.000 0.00 0.00 0.00 3.28
223 224 1.557099 ATACGTGTCTCTCCTGCCAA 58.443 50.000 0.00 0.00 0.00 4.52
224 225 2.022195 GTATACGTGTCTCTCCTGCCA 58.978 52.381 0.00 0.00 0.00 4.92
225 226 2.022195 TGTATACGTGTCTCTCCTGCC 58.978 52.381 0.00 0.00 0.00 4.85
226 227 3.436496 GTTGTATACGTGTCTCTCCTGC 58.564 50.000 0.00 0.00 0.00 4.85
227 228 3.681855 CGTTGTATACGTGTCTCTCCTG 58.318 50.000 0.00 0.00 45.14 3.86
239 240 8.644318 ATCAAATCAGTAACCTCGTTGTATAC 57.356 34.615 0.00 0.00 0.00 1.47
240 241 8.471609 TGATCAAATCAGTAACCTCGTTGTATA 58.528 33.333 0.00 0.00 33.59 1.47
241 242 7.327975 TGATCAAATCAGTAACCTCGTTGTAT 58.672 34.615 0.00 0.00 33.59 2.29
242 243 6.693466 TGATCAAATCAGTAACCTCGTTGTA 58.307 36.000 0.00 0.00 33.59 2.41
243 244 5.547465 TGATCAAATCAGTAACCTCGTTGT 58.453 37.500 0.00 0.00 33.59 3.32
256 257 3.748083 GCTCCATAGCCTGATCAAATCA 58.252 45.455 0.00 0.00 43.40 2.57
269 270 1.153289 AAGCACGCAGGCTCCATAG 60.153 57.895 0.00 0.00 45.07 2.23
270 271 1.153369 GAAGCACGCAGGCTCCATA 60.153 57.895 0.00 0.00 45.07 2.74
271 272 2.437359 GAAGCACGCAGGCTCCAT 60.437 61.111 0.00 0.00 45.07 3.41
272 273 3.889134 CTGAAGCACGCAGGCTCCA 62.889 63.158 0.00 0.00 45.07 3.86
273 274 3.123620 CTGAAGCACGCAGGCTCC 61.124 66.667 0.00 0.00 45.07 4.70
274 275 1.669115 TTCTGAAGCACGCAGGCTC 60.669 57.895 0.00 0.00 45.07 4.70
276 277 1.580845 ATGTTCTGAAGCACGCAGGC 61.581 55.000 0.00 0.00 34.20 4.85
277 278 0.167470 CATGTTCTGAAGCACGCAGG 59.833 55.000 0.00 0.00 34.20 4.85
278 279 0.453950 GCATGTTCTGAAGCACGCAG 60.454 55.000 0.00 0.00 34.71 5.18
279 280 0.886043 AGCATGTTCTGAAGCACGCA 60.886 50.000 11.43 0.00 0.00 5.24
280 281 0.179205 GAGCATGTTCTGAAGCACGC 60.179 55.000 1.76 3.67 0.00 5.34
281 282 0.094216 CGAGCATGTTCTGAAGCACG 59.906 55.000 8.01 5.80 35.09 5.34
282 283 1.127582 GTCGAGCATGTTCTGAAGCAC 59.872 52.381 8.01 0.00 0.00 4.40
283 284 1.270252 TGTCGAGCATGTTCTGAAGCA 60.270 47.619 8.01 0.65 0.00 3.91
284 285 1.432514 TGTCGAGCATGTTCTGAAGC 58.567 50.000 8.01 0.00 0.00 3.86
285 286 4.214437 GTTTTGTCGAGCATGTTCTGAAG 58.786 43.478 8.01 0.00 0.00 3.02
286 287 3.003275 GGTTTTGTCGAGCATGTTCTGAA 59.997 43.478 8.01 0.00 0.00 3.02
287 288 2.548057 GGTTTTGTCGAGCATGTTCTGA 59.452 45.455 8.01 4.27 0.00 3.27
288 289 2.549754 AGGTTTTGTCGAGCATGTTCTG 59.450 45.455 8.01 1.96 0.00 3.02
289 290 2.851195 AGGTTTTGTCGAGCATGTTCT 58.149 42.857 8.01 0.00 0.00 3.01
290 291 3.626028 AAGGTTTTGTCGAGCATGTTC 57.374 42.857 0.00 0.00 0.00 3.18
291 292 4.385358 AAAAGGTTTTGTCGAGCATGTT 57.615 36.364 0.00 0.00 0.00 2.71
292 293 4.556699 GCTAAAAGGTTTTGTCGAGCATGT 60.557 41.667 0.00 0.00 31.62 3.21
293 294 3.914364 GCTAAAAGGTTTTGTCGAGCATG 59.086 43.478 0.00 0.00 31.62 4.06
294 295 3.821033 AGCTAAAAGGTTTTGTCGAGCAT 59.179 39.130 9.31 0.00 32.96 3.79
295 296 3.211045 AGCTAAAAGGTTTTGTCGAGCA 58.789 40.909 9.31 0.00 32.96 4.26
296 297 3.898517 AGCTAAAAGGTTTTGTCGAGC 57.101 42.857 0.00 0.00 31.49 5.03
297 298 4.537015 CCAAGCTAAAAGGTTTTGTCGAG 58.463 43.478 0.00 0.00 32.99 4.04
298 299 3.316868 CCCAAGCTAAAAGGTTTTGTCGA 59.683 43.478 0.00 0.00 32.99 4.20
299 300 3.638484 CCCAAGCTAAAAGGTTTTGTCG 58.362 45.455 0.00 0.00 32.99 4.35
300 301 3.181470 TGCCCAAGCTAAAAGGTTTTGTC 60.181 43.478 0.00 0.00 40.80 3.18
301 302 2.769095 TGCCCAAGCTAAAAGGTTTTGT 59.231 40.909 0.00 0.00 40.80 2.83
302 303 3.069443 TCTGCCCAAGCTAAAAGGTTTTG 59.931 43.478 0.00 0.00 40.80 2.44
303 304 3.304829 TCTGCCCAAGCTAAAAGGTTTT 58.695 40.909 0.00 0.00 40.80 2.43
304 305 2.957474 TCTGCCCAAGCTAAAAGGTTT 58.043 42.857 0.00 0.00 40.80 3.27
305 306 2.675658 TCTGCCCAAGCTAAAAGGTT 57.324 45.000 0.00 0.00 40.80 3.50
306 307 2.450476 CATCTGCCCAAGCTAAAAGGT 58.550 47.619 0.00 0.00 40.80 3.50
307 308 1.135721 GCATCTGCCCAAGCTAAAAGG 59.864 52.381 0.00 0.00 40.80 3.11
308 309 2.097825 AGCATCTGCCCAAGCTAAAAG 58.902 47.619 0.00 0.00 43.38 2.27
309 310 2.220653 AGCATCTGCCCAAGCTAAAA 57.779 45.000 0.00 0.00 43.38 1.52
310 311 2.220653 AAGCATCTGCCCAAGCTAAA 57.779 45.000 0.00 0.00 43.38 1.85
311 312 2.220653 AAAGCATCTGCCCAAGCTAA 57.779 45.000 0.00 0.00 43.38 3.09
312 313 1.820519 CAAAAGCATCTGCCCAAGCTA 59.179 47.619 0.00 0.00 43.38 3.32
313 314 0.606604 CAAAAGCATCTGCCCAAGCT 59.393 50.000 0.00 0.00 43.38 3.74
314 315 0.319405 ACAAAAGCATCTGCCCAAGC 59.681 50.000 0.00 0.00 43.38 4.01
315 316 2.825861 AACAAAAGCATCTGCCCAAG 57.174 45.000 0.00 0.00 43.38 3.61
316 317 2.699846 AGAAACAAAAGCATCTGCCCAA 59.300 40.909 0.00 0.00 43.38 4.12
317 318 2.318908 AGAAACAAAAGCATCTGCCCA 58.681 42.857 0.00 0.00 43.38 5.36
318 319 3.507622 ACTAGAAACAAAAGCATCTGCCC 59.492 43.478 0.00 0.00 43.38 5.36
319 320 4.773323 ACTAGAAACAAAAGCATCTGCC 57.227 40.909 0.00 0.00 43.38 4.85
320 321 5.797434 GCTAACTAGAAACAAAAGCATCTGC 59.203 40.000 0.00 0.00 42.49 4.26
321 322 6.902341 TGCTAACTAGAAACAAAAGCATCTG 58.098 36.000 0.00 0.00 33.84 2.90
322 323 7.445402 TCTTGCTAACTAGAAACAAAAGCATCT 59.555 33.333 0.00 0.00 38.21 2.90
323 324 7.584987 TCTTGCTAACTAGAAACAAAAGCATC 58.415 34.615 0.00 0.00 38.21 3.91
324 325 7.510549 TCTTGCTAACTAGAAACAAAAGCAT 57.489 32.000 0.00 0.00 38.21 3.79
325 326 6.935741 TCTTGCTAACTAGAAACAAAAGCA 57.064 33.333 0.00 0.00 36.76 3.91
326 327 7.584987 TCATCTTGCTAACTAGAAACAAAAGC 58.415 34.615 0.00 0.00 31.34 3.51
327 328 9.387123 GTTCATCTTGCTAACTAGAAACAAAAG 57.613 33.333 0.00 0.00 31.34 2.27
328 329 8.067784 CGTTCATCTTGCTAACTAGAAACAAAA 58.932 33.333 0.00 0.00 31.34 2.44
329 330 7.225931 ACGTTCATCTTGCTAACTAGAAACAAA 59.774 33.333 0.00 0.00 31.34 2.83
330 331 6.704493 ACGTTCATCTTGCTAACTAGAAACAA 59.296 34.615 0.00 0.00 31.34 2.83
331 332 6.220930 ACGTTCATCTTGCTAACTAGAAACA 58.779 36.000 0.00 0.00 31.34 2.83
332 333 6.707599 ACGTTCATCTTGCTAACTAGAAAC 57.292 37.500 0.00 0.00 31.34 2.78
333 334 6.147164 CCAACGTTCATCTTGCTAACTAGAAA 59.853 38.462 0.00 0.00 31.34 2.52
334 335 5.637810 CCAACGTTCATCTTGCTAACTAGAA 59.362 40.000 0.00 0.00 31.34 2.10
335 336 5.168569 CCAACGTTCATCTTGCTAACTAGA 58.831 41.667 0.00 0.00 32.12 2.43
336 337 4.201724 GCCAACGTTCATCTTGCTAACTAG 60.202 45.833 0.00 0.00 0.00 2.57
337 338 3.682858 GCCAACGTTCATCTTGCTAACTA 59.317 43.478 0.00 0.00 0.00 2.24
338 339 2.484264 GCCAACGTTCATCTTGCTAACT 59.516 45.455 0.00 0.00 0.00 2.24
339 340 2.484264 AGCCAACGTTCATCTTGCTAAC 59.516 45.455 0.00 0.00 0.00 2.34
340 341 2.742053 GAGCCAACGTTCATCTTGCTAA 59.258 45.455 0.00 0.00 0.00 3.09
341 342 2.028112 AGAGCCAACGTTCATCTTGCTA 60.028 45.455 0.00 0.00 0.00 3.49
342 343 1.160137 GAGCCAACGTTCATCTTGCT 58.840 50.000 0.00 0.00 0.00 3.91
343 344 1.160137 AGAGCCAACGTTCATCTTGC 58.840 50.000 0.00 0.00 0.00 4.01
344 345 2.160417 GGAAGAGCCAACGTTCATCTTG 59.840 50.000 18.74 0.43 36.34 3.02
345 346 2.039084 AGGAAGAGCCAACGTTCATCTT 59.961 45.455 15.40 15.40 40.02 2.40
346 347 1.625818 AGGAAGAGCCAACGTTCATCT 59.374 47.619 0.00 0.00 40.02 2.90
347 348 2.100605 AGGAAGAGCCAACGTTCATC 57.899 50.000 0.00 0.00 40.02 2.92
348 349 2.568623 AAGGAAGAGCCAACGTTCAT 57.431 45.000 0.00 0.00 40.02 2.57
349 350 2.218603 GAAAGGAAGAGCCAACGTTCA 58.781 47.619 0.00 0.00 40.02 3.18
350 351 1.194772 CGAAAGGAAGAGCCAACGTTC 59.805 52.381 0.00 0.00 40.02 3.95
351 352 1.226746 CGAAAGGAAGAGCCAACGTT 58.773 50.000 0.00 0.00 40.02 3.99
352 353 1.228657 GCGAAAGGAAGAGCCAACGT 61.229 55.000 0.00 0.00 40.02 3.99
353 354 1.227999 TGCGAAAGGAAGAGCCAACG 61.228 55.000 0.00 0.00 40.02 4.10
354 355 0.238553 GTGCGAAAGGAAGAGCCAAC 59.761 55.000 0.00 0.00 40.02 3.77
355 356 0.889186 GGTGCGAAAGGAAGAGCCAA 60.889 55.000 0.00 0.00 40.02 4.52
356 357 1.302511 GGTGCGAAAGGAAGAGCCA 60.303 57.895 0.00 0.00 40.02 4.75
357 358 2.041115 GGGTGCGAAAGGAAGAGCC 61.041 63.158 0.00 0.00 0.00 4.70
358 359 1.003233 AGGGTGCGAAAGGAAGAGC 60.003 57.895 0.00 0.00 0.00 4.09
359 360 1.301677 GCAGGGTGCGAAAGGAAGAG 61.302 60.000 0.00 0.00 31.71 2.85
360 361 1.302511 GCAGGGTGCGAAAGGAAGA 60.303 57.895 0.00 0.00 31.71 2.87
361 362 3.267974 GCAGGGTGCGAAAGGAAG 58.732 61.111 0.00 0.00 31.71 3.46
369 370 5.857092 TAGGATACAACATGCAGGGTGCG 62.857 52.174 17.79 3.09 43.99 5.34
370 371 0.740737 GGATACAACATGCAGGGTGC 59.259 55.000 17.79 0.00 45.29 5.01
371 372 2.425143 AGGATACAACATGCAGGGTG 57.575 50.000 16.12 16.12 41.41 4.61
372 373 3.265737 TGTTAGGATACAACATGCAGGGT 59.734 43.478 2.31 0.00 41.41 4.34
373 374 3.884895 TGTTAGGATACAACATGCAGGG 58.115 45.455 2.31 0.00 41.41 4.45
374 375 6.791887 CTATGTTAGGATACAACATGCAGG 57.208 41.667 13.07 0.00 44.30 4.85
389 390 3.495100 GGCCATCACCAGACCTATGTTAG 60.495 52.174 0.00 0.00 0.00 2.34
390 391 2.438021 GGCCATCACCAGACCTATGTTA 59.562 50.000 0.00 0.00 0.00 2.41
391 392 1.212935 GGCCATCACCAGACCTATGTT 59.787 52.381 0.00 0.00 0.00 2.71
392 393 0.839946 GGCCATCACCAGACCTATGT 59.160 55.000 0.00 0.00 0.00 2.29
393 394 1.135094 AGGCCATCACCAGACCTATG 58.865 55.000 5.01 0.00 0.00 2.23
394 395 1.135094 CAGGCCATCACCAGACCTAT 58.865 55.000 5.01 0.00 0.00 2.57
395 396 1.626356 GCAGGCCATCACCAGACCTA 61.626 60.000 5.01 0.00 0.00 3.08
396 397 2.976490 GCAGGCCATCACCAGACCT 61.976 63.158 5.01 0.00 0.00 3.85
397 398 2.439156 GCAGGCCATCACCAGACC 60.439 66.667 5.01 0.00 0.00 3.85
398 399 1.748122 CAGCAGGCCATCACCAGAC 60.748 63.158 5.01 0.00 0.00 3.51
399 400 2.672908 CAGCAGGCCATCACCAGA 59.327 61.111 5.01 0.00 0.00 3.86
400 401 3.138798 GCAGCAGGCCATCACCAG 61.139 66.667 5.01 0.00 36.11 4.00
401 402 3.969119 TGCAGCAGGCCATCACCA 61.969 61.111 5.01 0.00 43.89 4.17
402 403 3.446570 GTGCAGCAGGCCATCACC 61.447 66.667 5.01 0.00 43.89 4.02
403 404 2.674033 TGTGCAGCAGGCCATCAC 60.674 61.111 5.01 5.72 43.89 3.06
404 405 2.674033 GTGTGCAGCAGGCCATCA 60.674 61.111 5.01 0.00 43.89 3.07
405 406 3.807538 CGTGTGCAGCAGGCCATC 61.808 66.667 5.01 0.00 43.89 3.51
406 407 4.648626 ACGTGTGCAGCAGGCCAT 62.649 61.111 5.01 0.00 43.89 4.40
407 408 4.873810 AACGTGTGCAGCAGGCCA 62.874 61.111 5.01 0.00 43.89 5.36
408 409 4.332637 CAACGTGTGCAGCAGGCC 62.333 66.667 0.00 0.00 43.89 5.19
409 410 3.585990 ACAACGTGTGCAGCAGGC 61.586 61.111 0.00 0.00 45.13 4.85
410 411 2.328989 CACAACGTGTGCAGCAGG 59.671 61.111 0.00 0.00 41.89 4.85
418 419 2.172372 TTAACGCCGCACAACGTGT 61.172 52.632 0.00 0.00 42.68 4.49
419 420 1.719766 GTTAACGCCGCACAACGTG 60.720 57.895 0.00 0.00 42.68 4.49
420 421 1.500512 ATGTTAACGCCGCACAACGT 61.501 50.000 0.26 0.00 46.07 3.99
421 422 0.787908 GATGTTAACGCCGCACAACG 60.788 55.000 0.26 0.00 43.15 4.10
422 423 0.236187 TGATGTTAACGCCGCACAAC 59.764 50.000 0.26 0.00 0.00 3.32
423 424 0.236187 GTGATGTTAACGCCGCACAA 59.764 50.000 0.26 0.00 0.00 3.33
424 425 1.570347 GGTGATGTTAACGCCGCACA 61.570 55.000 16.42 0.00 0.00 4.57
425 426 1.133869 GGTGATGTTAACGCCGCAC 59.866 57.895 0.26 6.31 0.00 5.34
426 427 0.604243 AAGGTGATGTTAACGCCGCA 60.604 50.000 0.26 0.00 42.03 5.69
427 428 0.096454 GAAGGTGATGTTAACGCCGC 59.904 55.000 0.26 1.88 42.03 6.53
428 429 1.434555 TGAAGGTGATGTTAACGCCG 58.565 50.000 0.26 0.00 42.03 6.46
429 430 2.747446 ACATGAAGGTGATGTTAACGCC 59.253 45.455 0.00 1.04 38.09 5.68
430 431 5.539582 TTACATGAAGGTGATGTTAACGC 57.460 39.130 0.00 0.00 35.62 4.84
431 432 7.692291 GTCATTTACATGAAGGTGATGTTAACG 59.308 37.037 0.00 0.00 41.30 3.18
432 433 8.730680 AGTCATTTACATGAAGGTGATGTTAAC 58.269 33.333 0.00 0.00 41.30 2.01
433 434 8.862325 AGTCATTTACATGAAGGTGATGTTAA 57.138 30.769 0.00 0.00 41.30 2.01
434 435 8.862325 AAGTCATTTACATGAAGGTGATGTTA 57.138 30.769 0.00 0.00 41.30 2.41
435 436 7.765695 AAGTCATTTACATGAAGGTGATGTT 57.234 32.000 0.00 0.00 41.30 2.71
436 437 7.309377 CCAAAGTCATTTACATGAAGGTGATGT 60.309 37.037 0.00 0.00 41.30 3.06
437 438 7.031372 CCAAAGTCATTTACATGAAGGTGATG 58.969 38.462 0.00 0.00 41.30 3.07
438 439 6.721208 ACCAAAGTCATTTACATGAAGGTGAT 59.279 34.615 0.00 0.00 41.30 3.06
439 440 6.068010 ACCAAAGTCATTTACATGAAGGTGA 58.932 36.000 0.00 0.00 41.30 4.02
440 441 6.331369 ACCAAAGTCATTTACATGAAGGTG 57.669 37.500 0.00 0.00 41.30 4.00
441 442 6.575162 GACCAAAGTCATTTACATGAAGGT 57.425 37.500 0.00 0.46 41.30 3.50
455 456 3.329929 AGTACCCGAATGACCAAAGTC 57.670 47.619 0.00 0.00 43.83 3.01
456 457 3.782656 AAGTACCCGAATGACCAAAGT 57.217 42.857 0.00 0.00 0.00 2.66
457 458 3.365969 GCAAAGTACCCGAATGACCAAAG 60.366 47.826 0.00 0.00 0.00 2.77
458 459 2.554893 GCAAAGTACCCGAATGACCAAA 59.445 45.455 0.00 0.00 0.00 3.28
459 460 2.156098 GCAAAGTACCCGAATGACCAA 58.844 47.619 0.00 0.00 0.00 3.67
460 461 1.612199 GGCAAAGTACCCGAATGACCA 60.612 52.381 0.00 0.00 0.00 4.02
461 462 1.092348 GGCAAAGTACCCGAATGACC 58.908 55.000 0.00 0.00 0.00 4.02
462 463 1.092348 GGGCAAAGTACCCGAATGAC 58.908 55.000 0.00 0.00 37.67 3.06
463 464 3.562397 GGGCAAAGTACCCGAATGA 57.438 52.632 0.00 0.00 37.67 2.57
469 470 1.320507 TCAAAACGGGCAAAGTACCC 58.679 50.000 0.00 0.00 44.63 3.69
470 471 3.313690 CATTCAAAACGGGCAAAGTACC 58.686 45.455 0.00 0.00 0.00 3.34
471 472 2.729360 GCATTCAAAACGGGCAAAGTAC 59.271 45.455 0.00 0.00 0.00 2.73
472 473 2.362397 TGCATTCAAAACGGGCAAAGTA 59.638 40.909 0.00 0.00 0.00 2.24
473 474 1.137872 TGCATTCAAAACGGGCAAAGT 59.862 42.857 0.00 0.00 0.00 2.66
474 475 1.863267 TGCATTCAAAACGGGCAAAG 58.137 45.000 0.00 0.00 0.00 2.77
475 476 2.540265 ATGCATTCAAAACGGGCAAA 57.460 40.000 0.00 0.00 38.08 3.68
476 477 3.583806 CTTATGCATTCAAAACGGGCAA 58.416 40.909 3.54 0.00 38.08 4.52
477 478 2.094286 CCTTATGCATTCAAAACGGGCA 60.094 45.455 3.54 0.00 39.03 5.36
478 479 2.094234 ACCTTATGCATTCAAAACGGGC 60.094 45.455 3.54 0.00 0.00 6.13
479 480 3.866883 ACCTTATGCATTCAAAACGGG 57.133 42.857 3.54 0.00 0.00 5.28
480 481 5.811399 TCTACCTTATGCATTCAAAACGG 57.189 39.130 3.54 0.00 0.00 4.44
481 482 8.586273 CAATTTCTACCTTATGCATTCAAAACG 58.414 33.333 3.54 0.00 0.00 3.60
482 483 8.382875 GCAATTTCTACCTTATGCATTCAAAAC 58.617 33.333 3.54 0.00 34.10 2.43
483 484 8.313292 AGCAATTTCTACCTTATGCATTCAAAA 58.687 29.630 3.54 0.00 36.30 2.44
484 485 7.839907 AGCAATTTCTACCTTATGCATTCAAA 58.160 30.769 3.54 0.00 36.30 2.69
485 486 7.340232 AGAGCAATTTCTACCTTATGCATTCAA 59.660 33.333 3.54 0.00 36.30 2.69
486 487 6.830324 AGAGCAATTTCTACCTTATGCATTCA 59.170 34.615 3.54 0.00 36.30 2.57
487 488 7.269477 AGAGCAATTTCTACCTTATGCATTC 57.731 36.000 3.54 0.00 36.30 2.67
488 489 8.159344 GTAGAGCAATTTCTACCTTATGCATT 57.841 34.615 3.54 0.00 42.32 3.56
489 490 7.736447 GTAGAGCAATTTCTACCTTATGCAT 57.264 36.000 3.79 3.79 42.32 3.96
530 531 9.723601 TGGAAATAGCTTGCAAGAATTTTATTT 57.276 25.926 30.39 23.99 31.54 1.40
531 532 9.374838 CTGGAAATAGCTTGCAAGAATTTTATT 57.625 29.630 30.39 18.55 34.60 1.40
532 533 8.534496 ACTGGAAATAGCTTGCAAGAATTTTAT 58.466 29.630 30.39 14.39 34.60 1.40
533 534 7.895759 ACTGGAAATAGCTTGCAAGAATTTTA 58.104 30.769 30.39 20.85 34.60 1.52
541 542 5.945784 ACTGATAACTGGAAATAGCTTGCAA 59.054 36.000 0.00 0.00 34.60 4.08
559 560 7.999545 ACTGTAAGGAAGCAGTCTATACTGATA 59.000 37.037 12.16 0.00 45.69 2.15
579 580 6.878389 TGCATATCACATCAAACAGACTGTAA 59.122 34.615 8.91 0.00 0.00 2.41
583 584 6.615088 GTTTGCATATCACATCAAACAGACT 58.385 36.000 10.63 0.00 44.39 3.24
595 596 9.955208 TCATCAATTAGATTGTTTGCATATCAC 57.045 29.630 0.00 0.00 41.02 3.06
651 652 4.253685 ACAAGTGGTTGATGATAGAACCG 58.746 43.478 0.00 0.00 44.04 4.44
741 742 1.001293 ACTGCAGATTCAGCGAGACAA 59.999 47.619 23.35 0.00 37.59 3.18
808 809 9.712305 CAGAATCAAACTCTACTCCTAGAAAAA 57.288 33.333 0.00 0.00 0.00 1.94
924 926 3.379372 CGGAAATCATGGAACTGCTGAAT 59.621 43.478 0.00 0.00 0.00 2.57
927 929 2.086869 ACGGAAATCATGGAACTGCTG 58.913 47.619 0.00 0.00 0.00 4.41
935 937 3.534554 TCAGATGTGACGGAAATCATGG 58.465 45.455 0.00 0.00 0.00 3.66
982 984 3.857052 CCATCGGTCACTAGCAAAGTAA 58.143 45.455 0.00 0.00 35.76 2.24
1161 1167 4.160439 TCTTCAATATGCTCTTCGGACAGT 59.840 41.667 0.00 0.00 0.00 3.55
1250 1257 5.751028 GCTTGGTCAACTCTACATAGTGATC 59.249 44.000 0.00 0.00 0.00 2.92
1252 1259 4.526650 TGCTTGGTCAACTCTACATAGTGA 59.473 41.667 0.00 0.00 0.00 3.41
1443 1450 6.674694 ACTATGATTGATGTCAGTTTGCTC 57.325 37.500 0.00 0.00 0.00 4.26
1444 1451 7.334090 ACTACTATGATTGATGTCAGTTTGCT 58.666 34.615 0.00 0.00 0.00 3.91
1709 1716 6.239176 GGGTGAAGAGATGGATCTAGTGTAAG 60.239 46.154 0.00 0.00 37.25 2.34
1857 1867 4.063689 CAAGATGCTCCTGCTTATGTAGG 58.936 47.826 6.43 6.43 45.80 3.18
1945 1955 1.379527 GTTCTCATTTACTGCCGGGG 58.620 55.000 2.18 0.00 0.00 5.73
1949 1959 1.737793 CCACGGTTCTCATTTACTGCC 59.262 52.381 0.00 0.00 0.00 4.85
2012 2022 4.600111 AGTAATGGGTCCTGTTTACCAAGA 59.400 41.667 0.00 0.00 38.87 3.02
2095 2105 7.083858 TGACATTTGTTTTAGCTATGCTCAAC 58.916 34.615 0.00 1.97 40.44 3.18
2188 2198 2.197577 GATAAGAGTGTGGCGCTTCTC 58.802 52.381 7.64 10.15 38.23 2.87
2189 2199 1.550524 TGATAAGAGTGTGGCGCTTCT 59.449 47.619 7.64 0.15 38.23 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.