Multiple sequence alignment - TraesCS2D01G123000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G123000 chr2D 100.000 3533 0 0 1 3533 71772197 71768665 0.000000e+00 6525.0
1 TraesCS2D01G123000 chr2D 100.000 1918 0 0 3944 5861 71768254 71766337 0.000000e+00 3542.0
2 TraesCS2D01G123000 chr2A 94.179 3281 118 36 295 3533 70881653 70878404 0.000000e+00 4933.0
3 TraesCS2D01G123000 chr2A 93.402 1561 80 15 4318 5861 70877960 70876406 0.000000e+00 2290.0
4 TraesCS2D01G123000 chr2A 97.931 290 6 0 3944 4233 70878336 70878047 2.440000e-138 503.0
5 TraesCS2D01G123000 chr2B 96.048 1569 41 9 1971 3533 108240679 108239126 0.000000e+00 2534.0
6 TraesCS2D01G123000 chr2B 91.126 1882 85 46 110 1942 108242524 108240676 0.000000e+00 2475.0
7 TraesCS2D01G123000 chr2B 92.403 1606 77 20 4264 5861 108238781 108237213 0.000000e+00 2248.0
8 TraesCS2D01G123000 chr2B 97.518 282 7 0 3944 4225 108239058 108238777 3.180000e-132 483.0
9 TraesCS2D01G123000 chr2B 81.596 451 57 16 167 608 108166253 108165820 3.360000e-92 350.0
10 TraesCS2D01G123000 chr2B 100.000 36 0 0 1 36 108242779 108242744 3.790000e-07 67.6
11 TraesCS2D01G123000 chr4A 93.333 240 12 1 3110 3349 504673101 504672866 9.340000e-93 351.0
12 TraesCS2D01G123000 chr7A 93.333 240 10 1 3110 3349 172072030 172072263 3.360000e-92 350.0
13 TraesCS2D01G123000 chr7A 93.333 240 10 3 3110 3349 667167245 667167012 3.360000e-92 350.0
14 TraesCS2D01G123000 chr7A 92.917 240 11 1 3110 3349 142308605 142308838 1.560000e-90 344.0
15 TraesCS2D01G123000 chr5B 93.939 231 14 0 3120 3350 691355584 691355354 3.360000e-92 350.0
16 TraesCS2D01G123000 chr3B 93.939 231 14 0 3120 3350 300293162 300293392 3.360000e-92 350.0
17 TraesCS2D01G123000 chr1B 92.917 240 11 1 3110 3349 102155930 102156163 1.560000e-90 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G123000 chr2D 71766337 71772197 5860 True 5033.500000 6525 100.000000 1 5861 2 chr2D.!!$R1 5860
1 TraesCS2D01G123000 chr2A 70876406 70881653 5247 True 2575.333333 4933 95.170667 295 5861 3 chr2A.!!$R1 5566
2 TraesCS2D01G123000 chr2B 108237213 108242779 5566 True 1561.520000 2534 95.419000 1 5861 5 chr2B.!!$R2 5860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.036765 TACAACGATGTGGGTGCTCC 60.037 55.000 8.79 0.0 40.84 4.70 F
1414 1608 0.107848 ATCTTCAACGCCGGGTAAGG 60.108 55.000 2.18 0.0 0.00 2.69 F
1424 1618 0.255033 CCGGGTAAGGGAAAGGAAGG 59.745 60.000 0.00 0.0 0.00 3.46 F
1539 1735 0.464036 CTAGCTGCCCACCGTATCAA 59.536 55.000 0.00 0.0 0.00 2.57 F
1646 1842 0.906775 TGGATGTTTCTACCGTCCCC 59.093 55.000 0.00 0.0 30.83 4.81 F
2180 2380 1.130613 CTCGCTGTTTTCTTCGCGG 59.869 57.895 6.13 0.0 45.11 6.46 F
4369 4592 0.250234 GATCTGGCCACACACAGCTA 59.750 55.000 0.00 0.0 34.76 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1643 0.175989 AGATTCGACGGGAAAGCTCC 59.824 55.000 0.00 0.00 38.36 4.70 R
2228 2428 0.448593 GTCGTCAGAGAAGTCCGAGG 59.551 60.000 0.00 0.00 0.00 4.63 R
2973 3183 1.118033 GCGCATGAAATCGATGCTTG 58.882 50.000 0.30 4.49 43.45 4.01 R
2987 3197 2.201732 CACCAAGTTAGTATCGCGCAT 58.798 47.619 8.75 2.59 0.00 4.73 R
4233 4445 2.026822 ACAAAGATTCTGGCATCGACCT 60.027 45.455 0.00 0.00 0.00 3.85 R
4635 4862 0.701147 TGAGGAGAGGAGAGTGCAGA 59.299 55.000 0.00 0.00 0.00 4.26 R
5440 5692 1.227999 GCAACAGCAGGCTAACACGA 61.228 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.068585 CCAATACCGACGGGGCTAC 59.931 63.158 20.00 0.00 40.62 3.58
37 38 1.678598 CCAATACCGACGGGGCTACA 61.679 60.000 20.00 0.00 40.62 2.74
38 39 0.176219 CAATACCGACGGGGCTACAA 59.824 55.000 20.00 0.00 40.62 2.41
39 40 0.176449 AATACCGACGGGGCTACAAC 59.824 55.000 20.00 0.00 40.62 3.32
40 41 2.008268 ATACCGACGGGGCTACAACG 62.008 60.000 20.00 0.00 40.62 4.10
41 42 3.751246 CCGACGGGGCTACAACGA 61.751 66.667 5.81 0.00 0.00 3.85
42 43 2.493030 CGACGGGGCTACAACGAT 59.507 61.111 0.00 0.00 0.00 3.73
43 44 1.876714 CGACGGGGCTACAACGATG 60.877 63.158 0.00 0.00 0.00 3.84
44 45 1.217244 GACGGGGCTACAACGATGT 59.783 57.895 3.12 3.12 43.74 3.06
45 46 1.079405 ACGGGGCTACAACGATGTG 60.079 57.895 8.79 0.04 40.84 3.21
46 47 1.813753 CGGGGCTACAACGATGTGG 60.814 63.158 8.79 6.70 40.84 4.17
47 48 1.451387 GGGGCTACAACGATGTGGG 60.451 63.158 8.79 2.68 40.84 4.61
48 49 1.298667 GGGCTACAACGATGTGGGT 59.701 57.895 8.79 0.00 40.84 4.51
49 50 1.024579 GGGCTACAACGATGTGGGTG 61.025 60.000 8.79 0.00 40.84 4.61
50 51 1.644786 GGCTACAACGATGTGGGTGC 61.645 60.000 8.79 7.35 40.84 5.01
51 52 0.673644 GCTACAACGATGTGGGTGCT 60.674 55.000 8.79 0.00 40.84 4.40
52 53 1.359848 CTACAACGATGTGGGTGCTC 58.640 55.000 8.79 0.00 40.84 4.26
53 54 0.036765 TACAACGATGTGGGTGCTCC 60.037 55.000 8.79 0.00 40.84 4.70
54 55 1.302431 CAACGATGTGGGTGCTCCA 60.302 57.895 7.20 0.85 44.79 3.86
62 63 3.543884 TGGGTGCTCCAATACGAAC 57.456 52.632 7.20 0.00 43.84 3.95
63 64 0.687920 TGGGTGCTCCAATACGAACA 59.312 50.000 7.20 0.00 43.84 3.18
64 65 1.338674 TGGGTGCTCCAATACGAACAG 60.339 52.381 7.20 0.00 43.84 3.16
65 66 1.066430 GGGTGCTCCAATACGAACAGA 60.066 52.381 7.20 0.00 35.00 3.41
66 67 2.000447 GGTGCTCCAATACGAACAGAC 59.000 52.381 0.00 0.00 0.00 3.51
67 68 2.611971 GGTGCTCCAATACGAACAGACA 60.612 50.000 0.00 0.00 0.00 3.41
68 69 2.412089 GTGCTCCAATACGAACAGACAC 59.588 50.000 0.00 0.00 0.00 3.67
69 70 2.000447 GCTCCAATACGAACAGACACC 59.000 52.381 0.00 0.00 0.00 4.16
70 71 2.611971 GCTCCAATACGAACAGACACCA 60.612 50.000 0.00 0.00 0.00 4.17
71 72 3.861840 CTCCAATACGAACAGACACCAT 58.138 45.455 0.00 0.00 0.00 3.55
72 73 3.595173 TCCAATACGAACAGACACCATG 58.405 45.455 0.00 0.00 0.00 3.66
73 74 2.095853 CCAATACGAACAGACACCATGC 59.904 50.000 0.00 0.00 0.00 4.06
74 75 2.024176 ATACGAACAGACACCATGCC 57.976 50.000 0.00 0.00 0.00 4.40
75 76 0.389296 TACGAACAGACACCATGCCG 60.389 55.000 0.00 0.00 0.00 5.69
76 77 2.870372 GAACAGACACCATGCCGC 59.130 61.111 0.00 0.00 0.00 6.53
77 78 3.027170 GAACAGACACCATGCCGCG 62.027 63.158 0.00 0.00 0.00 6.46
78 79 3.529341 AACAGACACCATGCCGCGA 62.529 57.895 8.23 0.00 0.00 5.87
79 80 2.512286 CAGACACCATGCCGCGAT 60.512 61.111 8.23 0.00 0.00 4.58
80 81 2.512286 AGACACCATGCCGCGATG 60.512 61.111 8.23 3.81 0.00 3.84
81 82 2.511373 GACACCATGCCGCGATGA 60.511 61.111 8.23 0.00 0.00 2.92
82 83 2.813179 GACACCATGCCGCGATGAC 61.813 63.158 8.23 0.00 0.00 3.06
83 84 2.512286 CACCATGCCGCGATGACT 60.512 61.111 8.23 0.00 0.00 3.41
84 85 2.202932 ACCATGCCGCGATGACTC 60.203 61.111 8.23 0.00 0.00 3.36
86 87 3.333189 CATGCCGCGATGACTCGG 61.333 66.667 8.23 0.00 45.15 4.63
103 104 2.830370 GGGGGCCTGCTTCGAATG 60.830 66.667 0.84 0.00 0.00 2.67
104 105 2.044946 GGGGCCTGCTTCGAATGT 60.045 61.111 0.84 0.00 0.00 2.71
105 106 2.115291 GGGGCCTGCTTCGAATGTC 61.115 63.158 0.84 0.00 0.00 3.06
106 107 2.115291 GGGCCTGCTTCGAATGTCC 61.115 63.158 0.84 0.00 0.00 4.02
107 108 1.078143 GGCCTGCTTCGAATGTCCT 60.078 57.895 0.00 0.00 0.00 3.85
108 109 1.372087 GGCCTGCTTCGAATGTCCTG 61.372 60.000 0.00 0.00 0.00 3.86
143 290 1.086634 GCGCACATCCCACTTCTCTC 61.087 60.000 0.30 0.00 0.00 3.20
149 296 3.381272 CACATCCCACTTCTCTCTCTCTC 59.619 52.174 0.00 0.00 0.00 3.20
150 297 3.269381 ACATCCCACTTCTCTCTCTCTCT 59.731 47.826 0.00 0.00 0.00 3.10
151 298 3.644966 TCCCACTTCTCTCTCTCTCTC 57.355 52.381 0.00 0.00 0.00 3.20
152 299 3.189606 TCCCACTTCTCTCTCTCTCTCT 58.810 50.000 0.00 0.00 0.00 3.10
235 382 4.935885 TTTGAAAACGCAGCAACATTTT 57.064 31.818 0.00 0.00 0.00 1.82
864 1044 0.763223 GGCGGGGGAAGATAAGGAGA 60.763 60.000 0.00 0.00 0.00 3.71
910 1090 2.476126 TTCGTTTCCGGATTAGCCAA 57.524 45.000 4.15 0.00 35.94 4.52
911 1091 2.018542 TCGTTTCCGGATTAGCCAAG 57.981 50.000 4.15 0.00 35.94 3.61
912 1092 1.014352 CGTTTCCGGATTAGCCAAGG 58.986 55.000 4.15 0.00 35.94 3.61
913 1093 1.389555 GTTTCCGGATTAGCCAAGGG 58.610 55.000 4.15 0.00 35.94 3.95
937 1119 2.636830 CTCGAGCTGGGTTGATTTGAT 58.363 47.619 0.00 0.00 0.00 2.57
966 1148 1.808891 CGCGTATTTCCCCGGAATCTT 60.809 52.381 0.73 0.00 33.79 2.40
967 1149 2.294979 GCGTATTTCCCCGGAATCTTT 58.705 47.619 0.73 0.00 33.79 2.52
982 1164 4.202010 GGAATCTTTCTCTCTCTGACGGAG 60.202 50.000 4.78 4.78 43.12 4.63
1204 1389 3.314693 AGCTCCCTCCCATTAACGATTA 58.685 45.455 0.00 0.00 0.00 1.75
1268 1458 0.903454 TCGTCCCCCTTCCTCTTCAC 60.903 60.000 0.00 0.00 0.00 3.18
1414 1608 0.107848 ATCTTCAACGCCGGGTAAGG 60.108 55.000 2.18 0.00 0.00 2.69
1416 1610 2.175035 CTTCAACGCCGGGTAAGGGA 62.175 60.000 2.18 0.00 0.00 4.20
1418 1612 1.302671 CAACGCCGGGTAAGGGAAA 60.303 57.895 2.18 0.00 0.00 3.13
1419 1613 1.002990 AACGCCGGGTAAGGGAAAG 60.003 57.895 2.18 0.00 0.00 2.62
1420 1614 2.124860 CGCCGGGTAAGGGAAAGG 60.125 66.667 2.18 0.00 0.00 3.11
1421 1615 2.662070 CGCCGGGTAAGGGAAAGGA 61.662 63.158 2.18 0.00 0.00 3.36
1422 1616 1.687014 GCCGGGTAAGGGAAAGGAA 59.313 57.895 2.18 0.00 0.00 3.36
1423 1617 0.393944 GCCGGGTAAGGGAAAGGAAG 60.394 60.000 2.18 0.00 0.00 3.46
1424 1618 0.255033 CCGGGTAAGGGAAAGGAAGG 59.745 60.000 0.00 0.00 0.00 3.46
1427 1621 2.617276 CGGGTAAGGGAAAGGAAGGAAC 60.617 54.545 0.00 0.00 0.00 3.62
1428 1622 2.291411 GGGTAAGGGAAAGGAAGGAACC 60.291 54.545 0.00 0.00 0.00 3.62
1431 1625 3.458044 AAGGGAAAGGAAGGAACCATC 57.542 47.619 0.00 0.00 0.00 3.51
1449 1643 2.202492 CGTTCCTCCGAGCTCACG 60.202 66.667 15.40 11.00 0.00 4.35
1490 1684 2.447250 GATCGATTCTCGCGTGTGTTA 58.553 47.619 5.77 0.00 40.21 2.41
1492 1686 1.198408 TCGATTCTCGCGTGTGTTACT 59.802 47.619 5.77 0.00 40.21 2.24
1493 1687 1.983605 CGATTCTCGCGTGTGTTACTT 59.016 47.619 5.77 0.00 31.14 2.24
1496 1690 1.401530 TCTCGCGTGTGTTACTTTCG 58.598 50.000 5.77 0.00 0.00 3.46
1497 1691 1.002576 TCTCGCGTGTGTTACTTTCGA 60.003 47.619 5.77 0.00 0.00 3.71
1498 1692 1.983605 CTCGCGTGTGTTACTTTCGAT 59.016 47.619 5.77 0.00 0.00 3.59
1499 1693 1.980844 TCGCGTGTGTTACTTTCGATC 59.019 47.619 5.77 0.00 0.00 3.69
1502 1696 3.718036 CGCGTGTGTTACTTTCGATCTTG 60.718 47.826 0.00 0.00 0.00 3.02
1506 1702 4.151867 GTGTGTTACTTTCGATCTTGTCCC 59.848 45.833 0.00 0.00 0.00 4.46
1539 1735 0.464036 CTAGCTGCCCACCGTATCAA 59.536 55.000 0.00 0.00 0.00 2.57
1646 1842 0.906775 TGGATGTTTCTACCGTCCCC 59.093 55.000 0.00 0.00 30.83 4.81
1799 1999 5.483685 AATCTGCAGTTCTTACCAGTGTA 57.516 39.130 14.67 0.00 0.00 2.90
1843 2043 1.305802 TGCGAGTAGGACCACCCAT 60.306 57.895 0.00 0.00 37.41 4.00
1862 2062 5.704978 ACCCATTTTGTTCATGGCATTTAAC 59.295 36.000 13.15 13.15 40.12 2.01
1871 2071 6.488344 TGTTCATGGCATTTAACACTTGTCTA 59.512 34.615 17.05 0.00 0.00 2.59
1876 2076 7.609760 TGGCATTTAACACTTGTCTATACTG 57.390 36.000 0.00 0.00 0.00 2.74
1913 2113 4.870636 TCCTGTCCCATTAAGCAATTGAT 58.129 39.130 10.34 0.00 0.00 2.57
1940 2140 4.237843 TCTAGAAGAATCTGCCCCATCAT 58.762 43.478 0.00 0.00 37.10 2.45
1941 2141 3.505480 AGAAGAATCTGCCCCATCATC 57.495 47.619 0.00 0.00 33.59 2.92
2180 2380 1.130613 CTCGCTGTTTTCTTCGCGG 59.869 57.895 6.13 0.00 45.11 6.46
2189 2389 3.799420 TGTTTTCTTCGCGGGAATTTTTG 59.201 39.130 15.86 3.76 0.00 2.44
2228 2428 1.310904 TGTTTGTTCTGCGGGGTTAC 58.689 50.000 0.00 0.00 0.00 2.50
2409 2609 6.429385 GTGAACCTCATCTCTTTCTGATGTTT 59.571 38.462 0.00 0.00 41.30 2.83
2410 2610 6.652481 TGAACCTCATCTCTTTCTGATGTTTC 59.348 38.462 0.00 0.00 41.30 2.78
2411 2611 6.371595 ACCTCATCTCTTTCTGATGTTTCT 57.628 37.500 0.00 0.00 41.30 2.52
2412 2612 6.777782 ACCTCATCTCTTTCTGATGTTTCTT 58.222 36.000 0.00 0.00 41.30 2.52
2506 2709 9.702494 ACAAATTTTCTCATGATTCTCCTTTTC 57.298 29.630 0.00 0.00 0.00 2.29
2507 2710 9.924650 CAAATTTTCTCATGATTCTCCTTTTCT 57.075 29.630 0.00 0.00 0.00 2.52
2591 2794 8.429237 TCAATCCACTGTTTACCCATATTTTT 57.571 30.769 0.00 0.00 0.00 1.94
2811 3018 5.008712 CCTTCCTTGGAGTGTTTGTAAGTTC 59.991 44.000 0.00 0.00 0.00 3.01
2857 3064 7.362056 GCACTCCTTTGCTTAACTAAATGATCA 60.362 37.037 0.00 0.00 39.59 2.92
2973 3183 5.721232 TCAACCCTCGAGTTCTTTCTTATC 58.279 41.667 12.31 0.00 0.00 1.75
2987 3197 7.848223 TCTTTCTTATCAAGCATCGATTTCA 57.152 32.000 0.00 0.00 0.00 2.69
3357 3568 1.607148 AGTCAAAAACTGCCGGCTAAC 59.393 47.619 29.70 13.08 36.65 2.34
3409 3621 3.490761 CGTTTGCAACCTTGTCCTTCATT 60.491 43.478 0.00 0.00 0.00 2.57
4043 4255 2.548920 CCTGACAAAGAAGACGGAGCTT 60.549 50.000 0.00 0.00 0.00 3.74
4235 4447 8.737175 GGTTCTAAACCCTTTCTTACAATAAGG 58.263 37.037 0.00 0.00 46.12 2.69
4236 4448 9.293404 GTTCTAAACCCTTTCTTACAATAAGGT 57.707 33.333 0.00 0.00 37.35 3.50
4237 4449 9.511272 TTCTAAACCCTTTCTTACAATAAGGTC 57.489 33.333 0.00 0.00 37.35 3.85
4238 4450 6.812879 AAACCCTTTCTTACAATAAGGTCG 57.187 37.500 0.00 0.00 37.35 4.79
4241 4453 6.113411 ACCCTTTCTTACAATAAGGTCGATG 58.887 40.000 0.00 0.00 37.35 3.84
4243 4455 5.007724 CCTTTCTTACAATAAGGTCGATGCC 59.992 44.000 0.00 0.00 34.93 4.40
4244 4456 4.746535 TCTTACAATAAGGTCGATGCCA 57.253 40.909 0.00 0.00 0.00 4.92
4245 4457 4.693283 TCTTACAATAAGGTCGATGCCAG 58.307 43.478 0.00 0.00 0.00 4.85
4246 4458 4.404394 TCTTACAATAAGGTCGATGCCAGA 59.596 41.667 0.00 0.00 0.00 3.86
4247 4459 3.627395 ACAATAAGGTCGATGCCAGAA 57.373 42.857 0.00 0.00 0.00 3.02
4248 4460 4.156455 ACAATAAGGTCGATGCCAGAAT 57.844 40.909 0.00 0.00 0.00 2.40
4250 4462 4.141620 ACAATAAGGTCGATGCCAGAATCT 60.142 41.667 0.00 0.00 0.00 2.40
4251 4463 4.696479 ATAAGGTCGATGCCAGAATCTT 57.304 40.909 0.00 0.00 0.00 2.40
4252 4464 3.356529 AAGGTCGATGCCAGAATCTTT 57.643 42.857 0.00 0.00 0.00 2.52
4253 4465 2.636830 AGGTCGATGCCAGAATCTTTG 58.363 47.619 0.00 0.00 0.00 2.77
4254 4466 2.026822 AGGTCGATGCCAGAATCTTTGT 60.027 45.455 0.00 0.00 0.00 2.83
4255 4467 2.096496 GGTCGATGCCAGAATCTTTGTG 59.904 50.000 0.00 0.00 0.00 3.33
4256 4468 1.739466 TCGATGCCAGAATCTTTGTGC 59.261 47.619 0.00 0.00 0.00 4.57
4257 4469 1.469703 CGATGCCAGAATCTTTGTGCA 59.530 47.619 0.00 0.00 0.00 4.57
4258 4470 2.730090 CGATGCCAGAATCTTTGTGCAC 60.730 50.000 10.75 10.75 0.00 4.57
4260 4472 1.251251 GCCAGAATCTTTGTGCACCT 58.749 50.000 15.69 0.00 0.00 4.00
4261 4473 1.615392 GCCAGAATCTTTGTGCACCTT 59.385 47.619 15.69 0.00 0.00 3.50
4262 4474 2.608752 GCCAGAATCTTTGTGCACCTTG 60.609 50.000 15.69 4.01 0.00 3.61
4263 4475 2.608752 CCAGAATCTTTGTGCACCTTGC 60.609 50.000 15.69 0.00 45.29 4.01
4264 4476 2.295349 CAGAATCTTTGTGCACCTTGCT 59.705 45.455 15.69 0.00 45.31 3.91
4265 4477 2.961062 AGAATCTTTGTGCACCTTGCTT 59.039 40.909 15.69 2.46 45.31 3.91
4267 4479 4.584325 AGAATCTTTGTGCACCTTGCTTTA 59.416 37.500 15.69 0.00 45.31 1.85
4268 4480 3.708563 TCTTTGTGCACCTTGCTTTAC 57.291 42.857 15.69 0.00 45.31 2.01
4269 4481 3.287222 TCTTTGTGCACCTTGCTTTACT 58.713 40.909 15.69 0.00 45.31 2.24
4357 4580 4.708726 ATTGCAGTTTACAAGATCTGGC 57.291 40.909 0.00 0.00 0.00 4.85
4369 4592 0.250234 GATCTGGCCACACACAGCTA 59.750 55.000 0.00 0.00 34.76 3.32
4408 4631 0.473755 TCACCAGCACCATCACTGTT 59.526 50.000 0.00 0.00 31.76 3.16
4432 4655 5.011635 TGTTCTGTTTAGCACTATGGTGAGA 59.988 40.000 14.15 2.68 45.61 3.27
4464 4687 3.372897 TGCAAATCCCTATCCAATGCAA 58.627 40.909 0.00 0.00 39.15 4.08
4482 4705 4.136796 TGCAATGTACCAGCTTATCATCC 58.863 43.478 0.00 0.00 0.00 3.51
4486 4709 3.562182 TGTACCAGCTTATCATCCGAGA 58.438 45.455 0.00 0.00 0.00 4.04
4557 4784 2.295909 TGTTTACCAGCTGTTTGGCATC 59.704 45.455 13.81 0.00 42.18 3.91
4635 4862 4.052229 CCCGCGTCACCGAAGTCT 62.052 66.667 4.92 0.00 35.63 3.24
4885 5112 1.079503 GCGAAGAAGCAACGGAGAAT 58.920 50.000 0.00 0.00 37.05 2.40
4922 5149 4.835615 AGGAGACACTCTGAACTGTAACAT 59.164 41.667 0.00 0.00 0.00 2.71
4932 5159 5.928839 TCTGAACTGTAACATGAAGAGAAGC 59.071 40.000 0.00 0.00 0.00 3.86
4940 5167 3.062763 ACATGAAGAGAAGCAAGTGTCG 58.937 45.455 0.00 0.00 0.00 4.35
4974 5201 8.691797 AGAAGAAGATGAAGTCTCAGGTAATAC 58.308 37.037 0.00 0.00 35.67 1.89
5068 5295 1.407437 GGCACCGACAGGAAGATGAAT 60.407 52.381 0.00 0.00 41.02 2.57
5177 5404 5.437191 TGTATCCTATGAGATCTCCGCTA 57.563 43.478 20.03 8.17 0.00 4.26
5216 5443 4.223953 CCTCCTGCATCTACCCTTACTTA 58.776 47.826 0.00 0.00 0.00 2.24
5217 5444 4.039366 CCTCCTGCATCTACCCTTACTTAC 59.961 50.000 0.00 0.00 0.00 2.34
5355 5583 7.370383 TCTTGAATTGAATTTGCCTCTTGTAC 58.630 34.615 0.00 0.00 0.00 2.90
5362 5590 0.386352 TTGCCTCTTGTACGTCGACG 60.386 55.000 34.58 34.58 46.33 5.12
5380 5608 0.809636 CGGCTGTCGTTATGATGCCA 60.810 55.000 16.93 0.00 44.36 4.92
5438 5690 6.479884 ACTTTTGTGAGGAGCTTGATATCTT 58.520 36.000 3.98 0.00 0.00 2.40
5440 5692 7.449704 ACTTTTGTGAGGAGCTTGATATCTTTT 59.550 33.333 3.98 0.00 0.00 2.27
5479 5731 5.772825 TGCAGCATAATTAGGTCCATTTC 57.227 39.130 0.00 0.00 0.00 2.17
5585 5841 1.002888 TCTGCTTTCCCTCTTGAGCTG 59.997 52.381 0.00 0.00 36.16 4.24
5610 5867 3.842925 TTGGTCCGTTGCCCAGAGC 62.843 63.158 0.00 0.00 44.14 4.09
5697 5954 2.234661 TGTGAGCATTCGGAAGAGACAT 59.765 45.455 0.00 0.00 43.69 3.06
5807 6064 6.798315 ATCATTCCTCATCACGAATTCATC 57.202 37.500 6.22 0.00 0.00 2.92
5849 6106 4.035909 GCTAGTGCAAGTAGAGTAGAGTCC 59.964 50.000 8.27 0.00 42.59 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.888736 TTGGAGCACCCACATCGTTG 60.889 55.000 0.00 0.00 46.62 4.10
37 38 0.038166 ATTGGAGCACCCACATCGTT 59.962 50.000 0.00 0.00 46.62 3.85
38 39 0.908910 TATTGGAGCACCCACATCGT 59.091 50.000 0.00 0.00 46.62 3.73
39 40 1.299541 GTATTGGAGCACCCACATCG 58.700 55.000 0.00 0.00 46.62 3.84
40 41 1.134521 TCGTATTGGAGCACCCACATC 60.135 52.381 0.00 0.00 46.62 3.06
41 42 0.908910 TCGTATTGGAGCACCCACAT 59.091 50.000 0.00 0.00 46.62 3.21
42 43 0.687920 TTCGTATTGGAGCACCCACA 59.312 50.000 0.00 0.00 46.62 4.17
43 44 1.084289 GTTCGTATTGGAGCACCCAC 58.916 55.000 0.00 0.00 46.62 4.61
44 45 0.687920 TGTTCGTATTGGAGCACCCA 59.312 50.000 0.00 0.00 44.93 4.51
45 46 1.066430 TCTGTTCGTATTGGAGCACCC 60.066 52.381 0.00 0.00 34.81 4.61
46 47 2.000447 GTCTGTTCGTATTGGAGCACC 59.000 52.381 0.00 0.00 0.00 5.01
47 48 2.412089 GTGTCTGTTCGTATTGGAGCAC 59.588 50.000 0.00 0.00 0.00 4.40
48 49 2.611971 GGTGTCTGTTCGTATTGGAGCA 60.612 50.000 0.00 0.00 0.00 4.26
49 50 2.000447 GGTGTCTGTTCGTATTGGAGC 59.000 52.381 0.00 0.00 0.00 4.70
50 51 3.313012 TGGTGTCTGTTCGTATTGGAG 57.687 47.619 0.00 0.00 0.00 3.86
51 52 3.595173 CATGGTGTCTGTTCGTATTGGA 58.405 45.455 0.00 0.00 0.00 3.53
52 53 2.095853 GCATGGTGTCTGTTCGTATTGG 59.904 50.000 0.00 0.00 0.00 3.16
53 54 2.095853 GGCATGGTGTCTGTTCGTATTG 59.904 50.000 0.00 0.00 0.00 1.90
54 55 2.356135 GGCATGGTGTCTGTTCGTATT 58.644 47.619 0.00 0.00 0.00 1.89
55 56 1.739035 CGGCATGGTGTCTGTTCGTAT 60.739 52.381 0.00 0.00 0.00 3.06
56 57 0.389296 CGGCATGGTGTCTGTTCGTA 60.389 55.000 0.00 0.00 0.00 3.43
57 58 1.667830 CGGCATGGTGTCTGTTCGT 60.668 57.895 0.00 0.00 0.00 3.85
58 59 3.027170 GCGGCATGGTGTCTGTTCG 62.027 63.158 0.00 0.00 0.00 3.95
59 60 2.870372 GCGGCATGGTGTCTGTTC 59.130 61.111 0.00 0.00 0.00 3.18
60 61 2.803155 ATCGCGGCATGGTGTCTGTT 62.803 55.000 6.13 0.00 0.00 3.16
61 62 3.315142 ATCGCGGCATGGTGTCTGT 62.315 57.895 6.13 0.00 0.00 3.41
62 63 2.512286 ATCGCGGCATGGTGTCTG 60.512 61.111 6.13 0.00 0.00 3.51
63 64 2.512286 CATCGCGGCATGGTGTCT 60.512 61.111 6.13 0.00 0.00 3.41
64 65 2.511373 TCATCGCGGCATGGTGTC 60.511 61.111 6.13 0.00 0.00 3.67
65 66 2.819595 GTCATCGCGGCATGGTGT 60.820 61.111 6.13 0.00 0.00 4.16
66 67 2.512286 AGTCATCGCGGCATGGTG 60.512 61.111 6.13 0.00 0.00 4.17
67 68 2.202932 GAGTCATCGCGGCATGGT 60.203 61.111 6.13 0.00 0.00 3.55
68 69 3.333189 CGAGTCATCGCGGCATGG 61.333 66.667 6.13 0.00 42.97 3.66
86 87 2.830370 CATTCGAAGCAGGCCCCC 60.830 66.667 3.35 0.00 0.00 5.40
87 88 2.044946 ACATTCGAAGCAGGCCCC 60.045 61.111 3.35 0.00 0.00 5.80
88 89 2.115291 GGACATTCGAAGCAGGCCC 61.115 63.158 3.35 0.00 0.00 5.80
89 90 1.078143 AGGACATTCGAAGCAGGCC 60.078 57.895 10.98 10.98 0.00 5.19
90 91 1.986575 GCAGGACATTCGAAGCAGGC 61.987 60.000 3.35 0.00 0.00 4.85
91 92 1.372087 GGCAGGACATTCGAAGCAGG 61.372 60.000 3.35 0.00 0.00 4.85
92 93 1.372087 GGGCAGGACATTCGAAGCAG 61.372 60.000 3.35 0.00 0.00 4.24
93 94 1.377202 GGGCAGGACATTCGAAGCA 60.377 57.895 3.35 0.00 0.00 3.91
94 95 0.749454 ATGGGCAGGACATTCGAAGC 60.749 55.000 3.35 0.00 0.00 3.86
95 96 1.019673 CATGGGCAGGACATTCGAAG 58.980 55.000 3.35 0.00 0.00 3.79
96 97 1.031571 GCATGGGCAGGACATTCGAA 61.032 55.000 0.00 0.00 40.72 3.71
97 98 1.451927 GCATGGGCAGGACATTCGA 60.452 57.895 0.00 0.00 40.72 3.71
98 99 1.452651 AGCATGGGCAGGACATTCG 60.453 57.895 0.00 0.00 44.61 3.34
99 100 0.682209 ACAGCATGGGCAGGACATTC 60.682 55.000 0.00 0.00 43.62 2.67
100 101 0.625316 TACAGCATGGGCAGGACATT 59.375 50.000 0.00 0.00 43.62 2.71
101 102 0.182061 CTACAGCATGGGCAGGACAT 59.818 55.000 0.00 0.00 43.62 3.06
102 103 0.909133 TCTACAGCATGGGCAGGACA 60.909 55.000 0.00 0.00 43.62 4.02
103 104 0.462759 GTCTACAGCATGGGCAGGAC 60.463 60.000 0.00 0.00 43.62 3.85
104 105 1.626356 GGTCTACAGCATGGGCAGGA 61.626 60.000 0.00 0.00 43.62 3.86
105 106 1.153086 GGTCTACAGCATGGGCAGG 60.153 63.158 0.00 0.00 43.62 4.85
106 107 1.522355 CGGTCTACAGCATGGGCAG 60.522 63.158 0.00 0.00 43.62 4.85
107 108 2.584064 CGGTCTACAGCATGGGCA 59.416 61.111 0.00 0.00 43.62 5.36
108 109 2.897350 GCGGTCTACAGCATGGGC 60.897 66.667 0.15 0.00 43.62 5.36
143 290 5.065859 TCGTAGCAAAATCAGAGAGAGAGAG 59.934 44.000 0.00 0.00 0.00 3.20
149 296 3.849911 TGGTCGTAGCAAAATCAGAGAG 58.150 45.455 0.00 0.00 0.00 3.20
150 297 3.953712 TGGTCGTAGCAAAATCAGAGA 57.046 42.857 0.00 0.00 0.00 3.10
151 298 4.631377 TCATTGGTCGTAGCAAAATCAGAG 59.369 41.667 4.14 0.00 39.20 3.35
152 299 4.574892 TCATTGGTCGTAGCAAAATCAGA 58.425 39.130 4.14 0.00 39.20 3.27
201 348 3.741344 CGTTTTCAAAAACACCCACACAA 59.259 39.130 16.22 0.00 46.52 3.33
204 351 2.288825 TGCGTTTTCAAAAACACCCACA 60.289 40.909 16.22 5.48 46.52 4.17
205 352 2.338500 TGCGTTTTCAAAAACACCCAC 58.662 42.857 16.22 3.46 46.52 4.61
235 382 3.623960 ACCGTGTCGAAAACATGAAGAAA 59.376 39.130 0.00 0.00 46.13 2.52
864 1044 1.499049 GGAGACGAACAACGAAGCTT 58.501 50.000 0.00 0.00 45.77 3.74
915 1095 0.678048 AAATCAACCCAGCTCGAGCC 60.678 55.000 32.94 15.76 43.38 4.70
918 1098 2.632377 GATCAAATCAACCCAGCTCGA 58.368 47.619 0.00 0.00 0.00 4.04
919 1099 1.672881 GGATCAAATCAACCCAGCTCG 59.327 52.381 0.00 0.00 0.00 5.03
924 1104 3.509442 AGCTTTGGATCAAATCAACCCA 58.491 40.909 0.00 0.00 32.70 4.51
925 1105 3.428045 CGAGCTTTGGATCAAATCAACCC 60.428 47.826 0.00 0.00 32.70 4.11
927 1107 3.174375 GCGAGCTTTGGATCAAATCAAC 58.826 45.455 0.00 0.00 32.70 3.18
937 1119 1.365699 GGAAATACGCGAGCTTTGGA 58.634 50.000 15.93 0.00 0.00 3.53
966 1148 1.680555 GCTCCTCCGTCAGAGAGAGAA 60.681 57.143 10.49 0.00 46.50 2.87
967 1149 0.107410 GCTCCTCCGTCAGAGAGAGA 60.107 60.000 10.49 0.00 46.50 3.10
1204 1389 4.022849 CGAGCAGAAAGAAATTGGAAGGTT 60.023 41.667 0.00 0.00 0.00 3.50
1414 1608 1.004394 ACGGATGGTTCCTTCCTTTCC 59.996 52.381 17.67 0.00 40.17 3.13
1416 1610 2.971901 AACGGATGGTTCCTTCCTTT 57.028 45.000 17.67 13.32 40.17 3.11
1427 1621 2.107141 GCTCGGAGGAACGGATGG 59.893 66.667 7.20 0.00 0.00 3.51
1428 1622 1.066587 GAGCTCGGAGGAACGGATG 59.933 63.158 7.20 0.00 0.00 3.51
1431 1625 2.182030 GTGAGCTCGGAGGAACGG 59.818 66.667 9.64 0.00 0.00 4.44
1449 1643 0.175989 AGATTCGACGGGAAAGCTCC 59.824 55.000 0.00 0.00 38.36 4.70
1452 1646 0.179145 TCGAGATTCGACGGGAAAGC 60.179 55.000 0.00 0.00 44.82 3.51
1490 1684 2.027100 GGGAAGGGACAAGATCGAAAGT 60.027 50.000 0.00 0.00 0.00 2.66
1492 1686 1.066430 CGGGAAGGGACAAGATCGAAA 60.066 52.381 0.00 0.00 0.00 3.46
1493 1687 0.535335 CGGGAAGGGACAAGATCGAA 59.465 55.000 0.00 0.00 0.00 3.71
1496 1690 1.153147 GCCGGGAAGGGACAAGATC 60.153 63.158 2.18 0.00 41.48 2.75
1497 1691 2.680370 GGCCGGGAAGGGACAAGAT 61.680 63.158 2.18 0.00 41.48 2.40
1498 1692 3.327404 GGCCGGGAAGGGACAAGA 61.327 66.667 2.18 0.00 41.48 3.02
1499 1693 4.426313 GGGCCGGGAAGGGACAAG 62.426 72.222 2.18 0.00 41.48 3.16
1527 1723 1.136110 GGCCATTTTTGATACGGTGGG 59.864 52.381 0.00 0.00 0.00 4.61
1539 1735 0.322322 CCACATGCACAGGCCATTTT 59.678 50.000 5.01 0.00 40.13 1.82
1605 1801 5.643777 CCATGTTTGGTACTAGGAGAAACTG 59.356 44.000 9.81 6.57 38.30 3.16
1606 1802 5.546499 TCCATGTTTGGTACTAGGAGAAACT 59.454 40.000 9.81 0.00 44.06 2.66
1607 1803 5.801380 TCCATGTTTGGTACTAGGAGAAAC 58.199 41.667 0.00 0.00 44.06 2.78
1608 1804 6.012858 ACATCCATGTTTGGTACTAGGAGAAA 60.013 38.462 0.00 0.00 44.06 2.52
1609 1805 5.487488 ACATCCATGTTTGGTACTAGGAGAA 59.513 40.000 0.00 0.00 44.06 2.87
1610 1806 5.030147 ACATCCATGTTTGGTACTAGGAGA 58.970 41.667 0.00 0.00 44.06 3.71
1611 1807 5.359194 ACATCCATGTTTGGTACTAGGAG 57.641 43.478 0.00 0.00 44.06 3.69
1646 1842 0.697079 ATCCAGATATGCCAGCCAGG 59.303 55.000 0.00 0.00 41.84 4.45
1793 1993 6.322201 AGGCAAATCCTATGGAAATTACACTG 59.678 38.462 0.00 0.00 45.41 3.66
1794 1994 6.435164 AGGCAAATCCTATGGAAATTACACT 58.565 36.000 0.00 0.00 45.41 3.55
1799 1999 8.825774 AGTAAAAAGGCAAATCCTATGGAAATT 58.174 29.630 0.00 0.00 46.94 1.82
1843 2043 6.820656 ACAAGTGTTAAATGCCATGAACAAAA 59.179 30.769 6.92 0.00 33.82 2.44
1862 2062 3.525537 CACCCAGCAGTATAGACAAGTG 58.474 50.000 0.00 0.00 0.00 3.16
1913 2113 3.452627 GGGGCAGATTCTTCTAGAGACAA 59.547 47.826 0.00 0.00 33.02 3.18
1940 2140 6.271488 CTGAACCAAAATTCAGCCTATTGA 57.729 37.500 2.78 0.00 46.69 2.57
2180 2380 4.949856 TCATCTACTCTGCCCAAAAATTCC 59.050 41.667 0.00 0.00 0.00 3.01
2189 2389 5.736951 ACATCTATTCATCTACTCTGCCC 57.263 43.478 0.00 0.00 0.00 5.36
2228 2428 0.448593 GTCGTCAGAGAAGTCCGAGG 59.551 60.000 0.00 0.00 0.00 4.63
2409 2609 3.385433 CCAATTGCTGCATATGGGAAAGA 59.615 43.478 20.52 0.00 0.00 2.52
2410 2610 3.385433 TCCAATTGCTGCATATGGGAAAG 59.615 43.478 25.01 7.74 0.00 2.62
2411 2611 3.372897 TCCAATTGCTGCATATGGGAAA 58.627 40.909 25.01 10.59 0.00 3.13
2412 2612 2.960384 CTCCAATTGCTGCATATGGGAA 59.040 45.455 25.01 12.31 0.00 3.97
2592 2795 5.505780 TGAGAACCTGTTTTCCAGAAGAAA 58.494 37.500 0.00 0.00 44.49 2.52
2593 2796 5.110814 TGAGAACCTGTTTTCCAGAAGAA 57.889 39.130 0.00 0.00 44.49 2.52
2594 2797 4.771114 TGAGAACCTGTTTTCCAGAAGA 57.229 40.909 0.00 0.00 44.49 2.87
2595 2798 5.532406 TGATTGAGAACCTGTTTTCCAGAAG 59.468 40.000 0.00 0.00 44.49 2.85
2811 3018 2.746362 GCAAAGGTGAGACTCCAGAATG 59.254 50.000 0.00 0.00 0.00 2.67
2857 3064 3.011566 TGTTAAATCCATGTGGCCGAT 57.988 42.857 0.00 0.00 34.44 4.18
2958 3165 5.516696 TCGATGCTTGATAAGAAAGAACTCG 59.483 40.000 0.00 0.00 0.00 4.18
2973 3183 1.118033 GCGCATGAAATCGATGCTTG 58.882 50.000 0.30 4.49 43.45 4.01
2987 3197 2.201732 CACCAAGTTAGTATCGCGCAT 58.798 47.619 8.75 2.59 0.00 4.73
4226 4438 4.746535 TTCTGGCATCGACCTTATTGTA 57.253 40.909 0.00 0.00 0.00 2.41
4230 4442 4.696479 AAGATTCTGGCATCGACCTTAT 57.304 40.909 0.00 0.00 0.00 1.73
4233 4445 2.026822 ACAAAGATTCTGGCATCGACCT 60.027 45.455 0.00 0.00 0.00 3.85
4234 4446 2.096496 CACAAAGATTCTGGCATCGACC 59.904 50.000 0.00 0.00 0.00 4.79
4235 4447 2.476854 GCACAAAGATTCTGGCATCGAC 60.477 50.000 0.00 0.00 0.00 4.20
4236 4448 1.739466 GCACAAAGATTCTGGCATCGA 59.261 47.619 0.00 0.00 0.00 3.59
4237 4449 1.469703 TGCACAAAGATTCTGGCATCG 59.530 47.619 0.00 0.00 0.00 3.84
4238 4450 2.416431 GGTGCACAAAGATTCTGGCATC 60.416 50.000 20.43 2.87 33.43 3.91
4241 4453 1.251251 AGGTGCACAAAGATTCTGGC 58.749 50.000 20.43 0.00 0.00 4.85
4243 4455 2.669364 GCAAGGTGCACAAAGATTCTG 58.331 47.619 20.43 4.48 44.26 3.02
4255 4467 3.914364 CGAATTTGAGTAAAGCAAGGTGC 59.086 43.478 0.00 0.00 45.46 5.01
4256 4468 3.914364 GCGAATTTGAGTAAAGCAAGGTG 59.086 43.478 0.00 0.00 0.00 4.00
4257 4469 3.568007 TGCGAATTTGAGTAAAGCAAGGT 59.432 39.130 0.00 0.00 0.00 3.50
4258 4470 4.159377 TGCGAATTTGAGTAAAGCAAGG 57.841 40.909 0.00 0.00 0.00 3.61
4260 4472 9.284594 GTTAATATGCGAATTTGAGTAAAGCAA 57.715 29.630 0.00 0.00 36.69 3.91
4261 4473 8.673711 AGTTAATATGCGAATTTGAGTAAAGCA 58.326 29.630 0.00 0.00 37.54 3.91
4262 4474 9.159470 GAGTTAATATGCGAATTTGAGTAAAGC 57.841 33.333 0.00 0.00 0.00 3.51
4267 4479 8.942338 TGTAGAGTTAATATGCGAATTTGAGT 57.058 30.769 0.00 0.00 0.00 3.41
4308 4531 3.004734 GGCAAAGAGTTAAGCTTGCAGAA 59.995 43.478 9.86 0.00 0.00 3.02
4357 4580 2.317609 GCCGTGTAGCTGTGTGTGG 61.318 63.158 0.00 0.00 0.00 4.17
4369 4592 0.738063 TCATTATCGCGTTGCCGTGT 60.738 50.000 5.77 0.00 44.70 4.49
4408 4631 5.011635 TCTCACCATAGTGCTAAACAGAACA 59.988 40.000 0.00 0.00 44.16 3.18
4464 4687 4.152647 TCTCGGATGATAAGCTGGTACAT 58.847 43.478 0.00 0.00 38.20 2.29
4511 4734 5.178252 CGATACATGATGTCAGATGGTTTCC 59.822 44.000 0.00 0.00 0.00 3.13
4557 4784 2.005451 CGGATCAGAGGCTTTGTCAAG 58.995 52.381 4.83 0.00 0.00 3.02
4635 4862 0.701147 TGAGGAGAGGAGAGTGCAGA 59.299 55.000 0.00 0.00 0.00 4.26
4885 5112 2.171840 GTCTCCTGAAGCTGTAGTGGA 58.828 52.381 0.00 0.00 0.00 4.02
4889 5116 3.088532 AGAGTGTCTCCTGAAGCTGTAG 58.911 50.000 0.00 0.00 0.00 2.74
4922 5149 1.202521 TGCGACACTTGCTTCTCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
4932 5159 1.194098 CTTCTGAAGCTGCGACACTTG 59.806 52.381 4.20 0.00 0.00 3.16
4940 5167 4.603231 CTTCATCTTCTTCTGAAGCTGC 57.397 45.455 12.54 0.00 46.81 5.25
4955 5182 8.178964 CGCTATAGTATTACCTGAGACTTCATC 58.821 40.741 0.84 0.00 31.68 2.92
4956 5183 7.666388 ACGCTATAGTATTACCTGAGACTTCAT 59.334 37.037 0.84 0.00 31.68 2.57
4957 5184 6.996879 ACGCTATAGTATTACCTGAGACTTCA 59.003 38.462 0.84 0.00 0.00 3.02
5046 5273 2.283529 ATCTTCCTGTCGGTGCCGT 61.284 57.895 10.60 0.00 40.74 5.68
5068 5295 1.674441 CTCGCATCACCGTTACTAGGA 59.326 52.381 0.00 0.00 0.00 2.94
5097 5324 0.526096 TGTCGTAACCGATAAGGCGC 60.526 55.000 0.00 0.00 46.30 6.53
5177 5404 4.385405 GTCAGACGCCTGCCTGCT 62.385 66.667 0.00 0.00 40.20 4.24
5324 5552 9.857656 AGAGGCAAATTCAATTCAAGATAGATA 57.142 29.630 0.00 0.00 0.00 1.98
5335 5563 5.616866 CGACGTACAAGAGGCAAATTCAATT 60.617 40.000 0.00 0.00 0.00 2.32
5362 5590 1.378531 TTGGCATCATAACGACAGCC 58.621 50.000 0.00 0.00 44.63 4.85
5430 5682 4.570772 GCAGGCTAACACGAAAAGATATCA 59.429 41.667 5.32 0.00 0.00 2.15
5438 5690 1.601903 CAACAGCAGGCTAACACGAAA 59.398 47.619 0.00 0.00 0.00 3.46
5440 5692 1.227999 GCAACAGCAGGCTAACACGA 61.228 55.000 0.00 0.00 0.00 4.35
5472 5724 6.058833 TGCTACAAAAGTAGTGTGAAATGGA 58.941 36.000 4.76 0.00 0.00 3.41
5479 5731 5.064707 AGTGTGTTGCTACAAAAGTAGTGTG 59.935 40.000 1.60 0.00 35.69 3.82
5500 5752 3.550437 ATTTGGCTGCTCCTAGTAGTG 57.450 47.619 0.00 0.00 35.26 2.74
5585 5841 2.852180 GCAACGGACCAAACCACCC 61.852 63.158 0.00 0.00 0.00 4.61
5610 5867 3.426695 GGAACTGAATCTGAAACATGCCG 60.427 47.826 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.