Multiple sequence alignment - TraesCS2D01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G121600 chr2D 100.000 2937 0 0 1 2937 70797410 70794474 0.000000e+00 5424.0
1 TraesCS2D01G121600 chr2D 86.827 1541 111 31 740 2270 71391116 71392574 0.000000e+00 1637.0
2 TraesCS2D01G121600 chr2D 83.429 525 68 15 1908 2426 71201780 71202291 1.230000e-128 470.0
3 TraesCS2D01G121600 chr2D 94.118 119 7 0 2811 2929 71393178 71393296 6.470000e-42 182.0
4 TraesCS2D01G121600 chr2D 86.667 105 13 1 2417 2520 71202329 71202433 6.650000e-22 115.0
5 TraesCS2D01G121600 chr2A 87.727 1597 122 26 702 2270 70192942 70194492 0.000000e+00 1796.0
6 TraesCS2D01G121600 chr2A 100.000 45 0 0 313 357 748821163 748821119 1.880000e-12 84.2
7 TraesCS2D01G121600 chr2B 95.204 834 29 3 1524 2357 107081295 107080473 0.000000e+00 1308.0
8 TraesCS2D01G121600 chr2B 89.826 747 59 3 1524 2270 107532162 107532891 0.000000e+00 942.0
9 TraesCS2D01G121600 chr2B 90.118 678 49 6 770 1435 107531443 107532114 0.000000e+00 865.0
10 TraesCS2D01G121600 chr2B 88.275 597 64 3 763 1355 107085508 107084914 0.000000e+00 710.0
11 TraesCS2D01G121600 chr2B 94.958 119 6 0 2811 2929 107533464 107533582 1.390000e-43 187.0
12 TraesCS2D01G121600 chr2B 89.744 117 12 0 1848 1964 107521533 107521649 1.820000e-32 150.0
13 TraesCS2D01G121600 chr5D 97.152 316 9 0 1 316 359547731 359548046 4.310000e-148 534.0
14 TraesCS2D01G121600 chr5D 96.508 315 10 1 1 314 84452879 84453193 1.210000e-143 520.0
15 TraesCS2D01G121600 chr5D 96.497 314 11 0 2 315 432178796 432178483 1.210000e-143 520.0
16 TraesCS2D01G121600 chr5D 100.000 46 0 0 313 358 547601126 547601081 5.220000e-13 86.1
17 TraesCS2D01G121600 chr5D 95.349 43 1 1 313 355 60901444 60901485 1.890000e-07 67.6
18 TraesCS2D01G121600 chr3D 96.875 320 9 1 1 319 486146596 486146277 4.310000e-148 534.0
19 TraesCS2D01G121600 chr3D 95.584 317 13 1 1 317 363854263 363853948 9.390000e-140 507.0
20 TraesCS2D01G121600 chr3D 94.286 35 1 1 332 366 447575900 447575933 5.000000e-03 52.8
21 TraesCS2D01G121600 chr4A 96.238 319 12 0 1 319 274645865 274646183 9.330000e-145 523.0
22 TraesCS2D01G121600 chr3A 96.178 314 12 0 1 314 418753442 418753129 5.610000e-142 514.0
23 TraesCS2D01G121600 chr5B 95.611 319 13 1 1 319 56362142 56362459 7.260000e-141 510.0
24 TraesCS2D01G121600 chr6D 95.584 317 14 0 1 317 58721388 58721072 2.610000e-140 508.0
25 TraesCS2D01G121600 chr7B 100.000 45 0 0 313 357 375197136 375197180 1.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G121600 chr2D 70794474 70797410 2936 True 5424.000000 5424 100.0000 1 2937 1 chr2D.!!$R1 2936
1 TraesCS2D01G121600 chr2D 71391116 71393296 2180 False 909.500000 1637 90.4725 740 2929 2 chr2D.!!$F2 2189
2 TraesCS2D01G121600 chr2D 71201780 71202433 653 False 292.500000 470 85.0480 1908 2520 2 chr2D.!!$F1 612
3 TraesCS2D01G121600 chr2A 70192942 70194492 1550 False 1796.000000 1796 87.7270 702 2270 1 chr2A.!!$F1 1568
4 TraesCS2D01G121600 chr2B 107080473 107085508 5035 True 1009.000000 1308 91.7395 763 2357 2 chr2B.!!$R1 1594
5 TraesCS2D01G121600 chr2B 107531443 107533582 2139 False 664.666667 942 91.6340 770 2929 3 chr2B.!!$F2 2159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.030908 GTTCCGTAGCTCCGATGAGG 59.969 60.0 0.00 0.00 39.14 3.86 F
517 518 0.034863 ACCATTTCCGTATGCCCGTT 60.035 50.0 0.00 0.00 0.00 4.44 F
564 565 0.034863 GGCCAGAACATAACCCGGAA 60.035 55.0 0.73 0.00 0.00 4.30 F
591 592 0.037975 AGCTGGCCGCAAAATTTGAG 60.038 50.0 19.30 6.17 42.61 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1380 0.465705 GAACCGGATCCAGATGCAGA 59.534 55.000 9.46 0.00 0.00 4.26 R
1410 4939 1.043116 TGCTGCCTATCTACTGCGGT 61.043 55.000 2.42 2.42 33.88 5.68 R
1878 5408 1.490574 CTGGTCCTCCCTCCAGTTAG 58.509 60.000 3.38 0.00 44.19 2.34 R
2452 6032 1.954382 CTGGGATGCATGACAGAATGG 59.046 52.381 17.99 0.00 43.62 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.677508 GAGGAGTTCTGGGAGCAGT 58.322 57.895 0.00 0.00 0.00 4.40
19 20 0.980423 GAGGAGTTCTGGGAGCAGTT 59.020 55.000 0.00 0.00 0.00 3.16
20 21 0.980423 AGGAGTTCTGGGAGCAGTTC 59.020 55.000 0.00 0.00 0.00 3.01
21 22 0.035915 GGAGTTCTGGGAGCAGTTCC 60.036 60.000 0.00 0.00 46.00 3.62
29 30 4.816990 GAGCAGTTCCGTAGCTCC 57.183 61.111 0.00 0.00 46.82 4.70
30 31 1.226717 GAGCAGTTCCGTAGCTCCG 60.227 63.158 0.00 0.00 46.82 4.63
31 32 1.654954 GAGCAGTTCCGTAGCTCCGA 61.655 60.000 0.00 0.00 46.82 4.55
32 33 1.038130 AGCAGTTCCGTAGCTCCGAT 61.038 55.000 0.00 0.00 32.05 4.18
33 34 0.872021 GCAGTTCCGTAGCTCCGATG 60.872 60.000 0.00 0.00 0.00 3.84
34 35 0.738975 CAGTTCCGTAGCTCCGATGA 59.261 55.000 0.00 0.00 0.00 2.92
35 36 1.025812 AGTTCCGTAGCTCCGATGAG 58.974 55.000 0.00 0.00 41.84 2.90
36 37 0.030908 GTTCCGTAGCTCCGATGAGG 59.969 60.000 0.00 0.00 39.14 3.86
51 52 6.839454 TCCGATGAGGAGTAGTTTATCTAGT 58.161 40.000 0.00 0.00 45.98 2.57
52 53 7.971201 TCCGATGAGGAGTAGTTTATCTAGTA 58.029 38.462 0.00 0.00 45.98 1.82
53 54 8.095792 TCCGATGAGGAGTAGTTTATCTAGTAG 58.904 40.741 0.00 0.00 45.98 2.57
54 55 7.879160 CCGATGAGGAGTAGTTTATCTAGTAGT 59.121 40.741 0.00 0.00 45.00 2.73
55 56 9.275398 CGATGAGGAGTAGTTTATCTAGTAGTT 57.725 37.037 0.00 0.00 32.96 2.24
58 59 9.970553 TGAGGAGTAGTTTATCTAGTAGTTTGA 57.029 33.333 0.00 0.00 32.96 2.69
72 73 9.856488 TCTAGTAGTTTGAATAAGCAGTAGTTG 57.144 33.333 0.00 0.00 0.00 3.16
73 74 9.856488 CTAGTAGTTTGAATAAGCAGTAGTTGA 57.144 33.333 0.00 0.00 0.00 3.18
75 76 9.209175 AGTAGTTTGAATAAGCAGTAGTTGAAG 57.791 33.333 0.00 0.00 0.00 3.02
76 77 8.989980 GTAGTTTGAATAAGCAGTAGTTGAAGT 58.010 33.333 0.00 0.00 0.00 3.01
77 78 8.451908 AGTTTGAATAAGCAGTAGTTGAAGTT 57.548 30.769 0.00 0.00 0.00 2.66
78 79 8.345565 AGTTTGAATAAGCAGTAGTTGAAGTTG 58.654 33.333 0.00 0.00 0.00 3.16
79 80 8.342634 GTTTGAATAAGCAGTAGTTGAAGTTGA 58.657 33.333 0.00 0.00 0.00 3.18
80 81 8.621532 TTGAATAAGCAGTAGTTGAAGTTGAT 57.378 30.769 0.00 0.00 0.00 2.57
81 82 8.032952 TGAATAAGCAGTAGTTGAAGTTGATG 57.967 34.615 0.00 0.00 0.00 3.07
82 83 7.661437 TGAATAAGCAGTAGTTGAAGTTGATGT 59.339 33.333 0.00 0.00 0.00 3.06
83 84 9.151471 GAATAAGCAGTAGTTGAAGTTGATGTA 57.849 33.333 0.00 0.00 0.00 2.29
84 85 9.672673 AATAAGCAGTAGTTGAAGTTGATGTAT 57.327 29.630 0.00 0.00 0.00 2.29
85 86 6.974932 AGCAGTAGTTGAAGTTGATGTATG 57.025 37.500 0.00 0.00 0.00 2.39
86 87 6.701340 AGCAGTAGTTGAAGTTGATGTATGA 58.299 36.000 0.00 0.00 0.00 2.15
87 88 7.161404 AGCAGTAGTTGAAGTTGATGTATGAA 58.839 34.615 0.00 0.00 0.00 2.57
88 89 7.661437 AGCAGTAGTTGAAGTTGATGTATGAAA 59.339 33.333 0.00 0.00 0.00 2.69
89 90 7.746475 GCAGTAGTTGAAGTTGATGTATGAAAC 59.254 37.037 0.00 0.00 0.00 2.78
90 91 8.993121 CAGTAGTTGAAGTTGATGTATGAAACT 58.007 33.333 0.00 0.00 35.70 2.66
94 95 9.507329 AGTTGAAGTTGATGTATGAAACTATGT 57.493 29.630 0.00 0.00 33.09 2.29
97 98 9.500785 TGAAGTTGATGTATGAAACTATGTTGA 57.499 29.630 0.00 0.00 33.09 3.18
117 118 9.985730 ATGTTGAATTTGATGTTTGAACTATGT 57.014 25.926 0.00 0.00 0.00 2.29
118 119 9.814899 TGTTGAATTTGATGTTTGAACTATGTT 57.185 25.926 0.00 0.00 0.00 2.71
124 125 8.815141 TTTGATGTTTGAACTATGTTGAATGG 57.185 30.769 0.00 0.00 0.00 3.16
125 126 7.757941 TGATGTTTGAACTATGTTGAATGGA 57.242 32.000 0.00 0.00 0.00 3.41
126 127 7.592938 TGATGTTTGAACTATGTTGAATGGAC 58.407 34.615 0.00 0.00 0.00 4.02
127 128 7.448161 TGATGTTTGAACTATGTTGAATGGACT 59.552 33.333 0.00 0.00 0.00 3.85
128 129 8.862325 ATGTTTGAACTATGTTGAATGGACTA 57.138 30.769 0.00 0.00 0.00 2.59
129 130 8.684386 TGTTTGAACTATGTTGAATGGACTAA 57.316 30.769 0.00 0.00 0.00 2.24
130 131 9.295825 TGTTTGAACTATGTTGAATGGACTAAT 57.704 29.630 0.00 0.00 0.00 1.73
139 140 8.818141 ATGTTGAATGGACTAATAGTATGTCG 57.182 34.615 0.00 0.00 0.00 4.35
140 141 7.778083 TGTTGAATGGACTAATAGTATGTCGT 58.222 34.615 0.00 0.00 0.00 4.34
141 142 8.255206 TGTTGAATGGACTAATAGTATGTCGTT 58.745 33.333 0.00 0.00 0.00 3.85
142 143 9.095065 GTTGAATGGACTAATAGTATGTCGTTT 57.905 33.333 0.00 0.00 0.00 3.60
143 144 9.661563 TTGAATGGACTAATAGTATGTCGTTTT 57.338 29.630 0.00 0.00 0.00 2.43
146 147 8.792831 ATGGACTAATAGTATGTCGTTTTACG 57.207 34.615 0.00 0.00 44.19 3.18
147 148 6.692681 TGGACTAATAGTATGTCGTTTTACGC 59.307 38.462 0.00 0.00 42.21 4.42
148 149 6.142958 GGACTAATAGTATGTCGTTTTACGCC 59.857 42.308 0.00 0.00 42.21 5.68
149 150 6.799512 ACTAATAGTATGTCGTTTTACGCCT 58.200 36.000 0.00 0.00 42.21 5.52
150 151 7.260603 ACTAATAGTATGTCGTTTTACGCCTT 58.739 34.615 0.00 0.00 42.21 4.35
151 152 6.579491 AATAGTATGTCGTTTTACGCCTTC 57.421 37.500 0.00 0.00 42.21 3.46
152 153 3.916761 AGTATGTCGTTTTACGCCTTCA 58.083 40.909 0.00 0.00 42.21 3.02
153 154 4.501071 AGTATGTCGTTTTACGCCTTCAT 58.499 39.130 0.00 0.00 42.21 2.57
154 155 4.933400 AGTATGTCGTTTTACGCCTTCATT 59.067 37.500 0.00 0.00 42.21 2.57
155 156 4.759516 ATGTCGTTTTACGCCTTCATTT 57.240 36.364 0.00 0.00 42.21 2.32
156 157 4.555348 TGTCGTTTTACGCCTTCATTTT 57.445 36.364 0.00 0.00 42.21 1.82
157 158 4.283678 TGTCGTTTTACGCCTTCATTTTG 58.716 39.130 0.00 0.00 42.21 2.44
158 159 3.666797 GTCGTTTTACGCCTTCATTTTGG 59.333 43.478 0.00 0.00 42.21 3.28
159 160 3.564644 TCGTTTTACGCCTTCATTTTGGA 59.435 39.130 0.00 0.00 42.21 3.53
160 161 3.666797 CGTTTTACGCCTTCATTTTGGAC 59.333 43.478 0.00 0.00 33.65 4.02
161 162 3.926821 TTTACGCCTTCATTTTGGACC 57.073 42.857 0.00 0.00 0.00 4.46
162 163 2.570415 TACGCCTTCATTTTGGACCA 57.430 45.000 0.00 0.00 0.00 4.02
163 164 1.923356 ACGCCTTCATTTTGGACCAT 58.077 45.000 0.00 0.00 0.00 3.55
164 165 1.818674 ACGCCTTCATTTTGGACCATC 59.181 47.619 0.00 0.00 0.00 3.51
165 166 2.094675 CGCCTTCATTTTGGACCATCT 58.905 47.619 0.00 0.00 0.00 2.90
166 167 3.278574 CGCCTTCATTTTGGACCATCTA 58.721 45.455 0.00 0.00 0.00 1.98
167 168 3.885297 CGCCTTCATTTTGGACCATCTAT 59.115 43.478 0.00 0.00 0.00 1.98
168 169 4.339247 CGCCTTCATTTTGGACCATCTATT 59.661 41.667 0.00 0.00 0.00 1.73
169 170 5.594926 GCCTTCATTTTGGACCATCTATTG 58.405 41.667 0.00 0.00 0.00 1.90
184 185 5.888105 CATCTATTGGAGTTGCTCTTTTGG 58.112 41.667 0.00 0.00 0.00 3.28
185 186 5.241403 TCTATTGGAGTTGCTCTTTTGGA 57.759 39.130 0.00 0.00 0.00 3.53
186 187 5.003804 TCTATTGGAGTTGCTCTTTTGGAC 58.996 41.667 0.00 0.00 0.00 4.02
187 188 1.981256 TGGAGTTGCTCTTTTGGACC 58.019 50.000 0.00 0.00 0.00 4.46
188 189 1.214175 TGGAGTTGCTCTTTTGGACCA 59.786 47.619 0.00 0.00 0.00 4.02
189 190 2.158475 TGGAGTTGCTCTTTTGGACCAT 60.158 45.455 0.00 0.00 0.00 3.55
190 191 2.489722 GGAGTTGCTCTTTTGGACCATC 59.510 50.000 0.00 0.00 0.00 3.51
191 192 3.149196 GAGTTGCTCTTTTGGACCATCA 58.851 45.455 0.00 0.00 0.00 3.07
192 193 3.565307 AGTTGCTCTTTTGGACCATCAA 58.435 40.909 0.00 0.00 0.00 2.57
193 194 4.154942 AGTTGCTCTTTTGGACCATCAAT 58.845 39.130 0.00 0.00 0.00 2.57
194 195 4.590222 AGTTGCTCTTTTGGACCATCAATT 59.410 37.500 0.00 0.00 0.00 2.32
195 196 5.070847 AGTTGCTCTTTTGGACCATCAATTT 59.929 36.000 0.00 0.00 0.00 1.82
196 197 4.885413 TGCTCTTTTGGACCATCAATTTG 58.115 39.130 0.00 0.00 0.00 2.32
197 198 4.248058 GCTCTTTTGGACCATCAATTTGG 58.752 43.478 0.00 0.00 42.82 3.28
198 199 4.021192 GCTCTTTTGGACCATCAATTTGGA 60.021 41.667 3.10 0.00 39.25 3.53
199 200 5.467035 TCTTTTGGACCATCAATTTGGAC 57.533 39.130 3.10 0.00 39.25 4.02
204 205 3.635591 GGACCATCAATTTGGACCATCT 58.364 45.455 11.42 0.00 46.78 2.90
205 206 3.382546 GGACCATCAATTTGGACCATCTG 59.617 47.826 11.42 0.00 46.78 2.90
206 207 4.019174 GACCATCAATTTGGACCATCTGT 58.981 43.478 3.10 0.00 39.25 3.41
207 208 4.419282 ACCATCAATTTGGACCATCTGTT 58.581 39.130 3.10 0.00 39.25 3.16
208 209 4.221262 ACCATCAATTTGGACCATCTGTTG 59.779 41.667 3.10 0.00 39.25 3.33
209 210 6.796646 ACCATCAATTTGGACCATCTGTTGG 61.797 44.000 18.12 18.12 44.65 3.77
210 211 8.907229 ACCATCAATTTGGACCATCTGTTGGA 62.907 42.308 22.75 7.30 42.98 3.53
238 239 2.766970 TTTTTCGGAGCTCCAAAACG 57.233 45.000 31.67 17.41 35.14 3.60
239 240 0.309612 TTTTCGGAGCTCCAAAACGC 59.690 50.000 31.67 3.61 35.14 4.84
240 241 0.816018 TTTCGGAGCTCCAAAACGCA 60.816 50.000 31.67 5.55 35.14 5.24
241 242 1.503818 TTCGGAGCTCCAAAACGCAC 61.504 55.000 31.67 2.06 35.14 5.34
242 243 1.961277 CGGAGCTCCAAAACGCACT 60.961 57.895 31.67 0.00 35.14 4.40
243 244 1.507141 CGGAGCTCCAAAACGCACTT 61.507 55.000 31.67 0.00 35.14 3.16
244 245 0.668535 GGAGCTCCAAAACGCACTTT 59.331 50.000 28.43 0.00 35.64 2.66
245 246 1.067060 GGAGCTCCAAAACGCACTTTT 59.933 47.619 28.43 0.00 35.64 2.27
246 247 2.481276 GGAGCTCCAAAACGCACTTTTT 60.481 45.455 28.43 0.00 35.64 1.94
247 248 2.535574 GAGCTCCAAAACGCACTTTTTG 59.464 45.455 0.87 5.60 43.34 2.44
248 249 2.165437 AGCTCCAAAACGCACTTTTTGA 59.835 40.909 12.39 4.28 45.54 2.69
249 250 3.123050 GCTCCAAAACGCACTTTTTGAT 58.877 40.909 12.39 0.00 45.54 2.57
250 251 3.060339 GCTCCAAAACGCACTTTTTGATG 60.060 43.478 12.39 6.91 45.54 3.07
251 252 3.452474 TCCAAAACGCACTTTTTGATGG 58.548 40.909 12.39 0.00 45.54 3.51
252 253 3.118956 TCCAAAACGCACTTTTTGATGGT 60.119 39.130 12.39 0.00 45.54 3.55
253 254 3.245048 CCAAAACGCACTTTTTGATGGTC 59.755 43.478 12.39 0.00 45.54 4.02
254 255 2.793278 AACGCACTTTTTGATGGTCC 57.207 45.000 0.00 0.00 0.00 4.46
255 256 1.686355 ACGCACTTTTTGATGGTCCA 58.314 45.000 0.00 0.00 0.00 4.02
256 257 2.028130 ACGCACTTTTTGATGGTCCAA 58.972 42.857 0.00 0.00 0.00 3.53
257 258 2.428890 ACGCACTTTTTGATGGTCCAAA 59.571 40.909 0.00 0.00 34.56 3.28
258 259 3.069443 ACGCACTTTTTGATGGTCCAAAT 59.931 39.130 0.00 0.00 36.12 2.32
259 260 4.057432 CGCACTTTTTGATGGTCCAAATT 58.943 39.130 0.00 0.00 36.12 1.82
260 261 4.511082 CGCACTTTTTGATGGTCCAAATTT 59.489 37.500 0.00 0.00 36.12 1.82
261 262 5.007528 CGCACTTTTTGATGGTCCAAATTTT 59.992 36.000 0.00 0.00 36.12 1.82
262 263 6.201806 CGCACTTTTTGATGGTCCAAATTTTA 59.798 34.615 0.00 0.00 36.12 1.52
263 264 7.351981 GCACTTTTTGATGGTCCAAATTTTAC 58.648 34.615 0.00 0.00 36.12 2.01
264 265 7.011857 GCACTTTTTGATGGTCCAAATTTTACA 59.988 33.333 0.00 0.00 36.12 2.41
265 266 9.054922 CACTTTTTGATGGTCCAAATTTTACAT 57.945 29.630 0.00 0.00 36.12 2.29
266 267 9.271828 ACTTTTTGATGGTCCAAATTTTACATC 57.728 29.630 0.00 11.39 36.12 3.06
267 268 9.492973 CTTTTTGATGGTCCAAATTTTACATCT 57.507 29.630 15.99 0.00 36.12 2.90
268 269 9.487790 TTTTTGATGGTCCAAATTTTACATCTC 57.512 29.630 15.99 6.21 36.12 2.75
269 270 6.773976 TGATGGTCCAAATTTTACATCTCC 57.226 37.500 15.99 3.91 36.56 3.71
270 271 5.356751 TGATGGTCCAAATTTTACATCTCCG 59.643 40.000 15.99 0.00 36.56 4.63
271 272 4.013728 TGGTCCAAATTTTACATCTCCGG 58.986 43.478 0.00 0.00 0.00 5.14
272 273 4.014406 GGTCCAAATTTTACATCTCCGGT 58.986 43.478 0.00 0.00 0.00 5.28
273 274 4.461431 GGTCCAAATTTTACATCTCCGGTT 59.539 41.667 0.00 0.00 0.00 4.44
274 275 5.047590 GGTCCAAATTTTACATCTCCGGTTT 60.048 40.000 0.00 0.00 0.00 3.27
275 276 6.452242 GTCCAAATTTTACATCTCCGGTTTT 58.548 36.000 0.00 0.00 0.00 2.43
276 277 6.364976 GTCCAAATTTTACATCTCCGGTTTTG 59.635 38.462 0.00 0.00 0.00 2.44
277 278 5.637387 CCAAATTTTACATCTCCGGTTTTGG 59.363 40.000 0.00 0.00 35.93 3.28
278 279 6.451393 CAAATTTTACATCTCCGGTTTTGGA 58.549 36.000 0.00 0.00 36.37 3.53
279 280 5.638596 ATTTTACATCTCCGGTTTTGGAC 57.361 39.130 0.00 0.00 33.48 4.02
280 281 2.773993 TACATCTCCGGTTTTGGACC 57.226 50.000 0.00 0.00 45.55 4.46
294 295 2.517650 TGGACCGCCAAATTTTGAAC 57.482 45.000 10.72 1.92 42.49 3.18
295 296 1.069358 TGGACCGCCAAATTTTGAACC 59.931 47.619 10.72 6.82 42.49 3.62
296 297 1.069358 GGACCGCCAAATTTTGAACCA 59.931 47.619 10.72 0.00 0.00 3.67
297 298 2.289382 GGACCGCCAAATTTTGAACCAT 60.289 45.455 10.72 0.00 0.00 3.55
298 299 2.993220 GACCGCCAAATTTTGAACCATC 59.007 45.455 10.72 0.00 0.00 3.51
299 300 2.632512 ACCGCCAAATTTTGAACCATCT 59.367 40.909 10.72 0.00 0.00 2.90
300 301 3.829601 ACCGCCAAATTTTGAACCATCTA 59.170 39.130 10.72 0.00 0.00 1.98
301 302 4.466015 ACCGCCAAATTTTGAACCATCTAT 59.534 37.500 10.72 0.00 0.00 1.98
302 303 5.046663 ACCGCCAAATTTTGAACCATCTATT 60.047 36.000 10.72 0.00 0.00 1.73
303 304 5.291614 CCGCCAAATTTTGAACCATCTATTG 59.708 40.000 10.72 0.00 0.00 1.90
327 328 1.723870 GCTCTTAGCACATTGGCGG 59.276 57.895 0.00 0.00 41.89 6.13
328 329 1.718757 GCTCTTAGCACATTGGCGGG 61.719 60.000 0.00 0.00 41.89 6.13
329 330 1.718757 CTCTTAGCACATTGGCGGGC 61.719 60.000 0.00 0.00 39.27 6.13
330 331 2.753849 TTAGCACATTGGCGGGCC 60.754 61.111 1.86 1.86 39.27 5.80
331 332 3.280938 TTAGCACATTGGCGGGCCT 62.281 57.895 11.55 0.00 39.27 5.19
332 333 2.779742 TTAGCACATTGGCGGGCCTT 62.780 55.000 11.55 0.00 39.27 4.35
333 334 4.440127 GCACATTGGCGGGCCTTG 62.440 66.667 11.55 10.87 36.94 3.61
334 335 3.762247 CACATTGGCGGGCCTTGG 61.762 66.667 11.55 2.65 36.94 3.61
359 360 4.489771 CCGCCCTGCACCCCTAAG 62.490 72.222 0.00 0.00 0.00 2.18
360 361 3.717294 CGCCCTGCACCCCTAAGT 61.717 66.667 0.00 0.00 0.00 2.24
361 362 2.763902 GCCCTGCACCCCTAAGTT 59.236 61.111 0.00 0.00 0.00 2.66
362 363 1.378646 GCCCTGCACCCCTAAGTTC 60.379 63.158 0.00 0.00 0.00 3.01
363 364 1.853250 GCCCTGCACCCCTAAGTTCT 61.853 60.000 0.00 0.00 0.00 3.01
364 365 1.580059 CCCTGCACCCCTAAGTTCTA 58.420 55.000 0.00 0.00 0.00 2.10
365 366 2.127708 CCCTGCACCCCTAAGTTCTAT 58.872 52.381 0.00 0.00 0.00 1.98
366 367 2.158755 CCCTGCACCCCTAAGTTCTATG 60.159 54.545 0.00 0.00 0.00 2.23
367 368 2.565841 CTGCACCCCTAAGTTCTATGC 58.434 52.381 0.00 0.00 0.00 3.14
368 369 1.912731 TGCACCCCTAAGTTCTATGCA 59.087 47.619 0.00 0.00 39.16 3.96
369 370 2.307392 TGCACCCCTAAGTTCTATGCAA 59.693 45.455 0.00 0.00 38.56 4.08
370 371 3.053693 TGCACCCCTAAGTTCTATGCAAT 60.054 43.478 0.00 0.00 38.56 3.56
371 372 4.165180 TGCACCCCTAAGTTCTATGCAATA 59.835 41.667 0.00 0.00 38.56 1.90
372 373 5.130350 GCACCCCTAAGTTCTATGCAATAA 58.870 41.667 0.00 0.00 0.00 1.40
373 374 5.770162 GCACCCCTAAGTTCTATGCAATAAT 59.230 40.000 0.00 0.00 0.00 1.28
374 375 6.940298 GCACCCCTAAGTTCTATGCAATAATA 59.060 38.462 0.00 0.00 0.00 0.98
375 376 7.611855 GCACCCCTAAGTTCTATGCAATAATAT 59.388 37.037 0.00 0.00 0.00 1.28
422 423 6.459670 AAAAACCCATCTCGTTTAACAACT 57.540 33.333 0.00 0.00 33.17 3.16
423 424 5.432885 AAACCCATCTCGTTTAACAACTG 57.567 39.130 0.00 0.00 31.75 3.16
424 425 2.812011 ACCCATCTCGTTTAACAACTGC 59.188 45.455 0.00 0.00 0.00 4.40
425 426 3.074412 CCCATCTCGTTTAACAACTGCT 58.926 45.455 0.00 0.00 0.00 4.24
426 427 3.502211 CCCATCTCGTTTAACAACTGCTT 59.498 43.478 0.00 0.00 0.00 3.91
427 428 4.023193 CCCATCTCGTTTAACAACTGCTTT 60.023 41.667 0.00 0.00 0.00 3.51
428 429 5.147162 CCATCTCGTTTAACAACTGCTTTC 58.853 41.667 0.00 0.00 0.00 2.62
429 430 4.446857 TCTCGTTTAACAACTGCTTTCG 57.553 40.909 0.00 0.00 0.00 3.46
430 431 3.246699 TCTCGTTTAACAACTGCTTTCGG 59.753 43.478 0.00 0.00 0.00 4.30
431 432 2.937799 TCGTTTAACAACTGCTTTCGGT 59.062 40.909 0.00 0.00 0.00 4.69
432 433 3.033185 CGTTTAACAACTGCTTTCGGTG 58.967 45.455 0.00 0.00 0.00 4.94
433 434 3.242478 CGTTTAACAACTGCTTTCGGTGA 60.242 43.478 0.00 0.00 0.00 4.02
434 435 4.664188 GTTTAACAACTGCTTTCGGTGAA 58.336 39.130 0.00 0.00 0.00 3.18
435 436 5.278604 GTTTAACAACTGCTTTCGGTGAAT 58.721 37.500 0.00 0.00 0.00 2.57
436 437 6.432107 GTTTAACAACTGCTTTCGGTGAATA 58.568 36.000 0.00 0.00 0.00 1.75
437 438 4.749245 AACAACTGCTTTCGGTGAATAG 57.251 40.909 0.00 0.00 0.00 1.73
438 439 3.074412 ACAACTGCTTTCGGTGAATAGG 58.926 45.455 0.00 0.00 0.00 2.57
439 440 1.739067 ACTGCTTTCGGTGAATAGGC 58.261 50.000 0.00 0.00 0.00 3.93
440 441 1.017387 CTGCTTTCGGTGAATAGGCC 58.983 55.000 0.00 0.00 0.00 5.19
442 443 2.014594 CTTTCGGTGAATAGGCCGC 58.985 57.895 0.00 0.00 46.79 6.53
443 444 0.462047 CTTTCGGTGAATAGGCCGCT 60.462 55.000 0.00 0.00 46.79 5.52
444 445 0.742990 TTTCGGTGAATAGGCCGCTG 60.743 55.000 0.00 0.00 46.79 5.18
445 446 3.272334 CGGTGAATAGGCCGCTGC 61.272 66.667 0.00 0.00 41.53 5.25
446 447 2.124736 GGTGAATAGGCCGCTGCA 60.125 61.111 1.55 0.00 40.13 4.41
447 448 1.526917 GGTGAATAGGCCGCTGCAT 60.527 57.895 1.55 0.00 40.13 3.96
448 449 0.250295 GGTGAATAGGCCGCTGCATA 60.250 55.000 1.55 0.00 38.25 3.14
449 450 1.593196 GTGAATAGGCCGCTGCATAA 58.407 50.000 1.55 0.00 37.29 1.90
450 451 2.154462 GTGAATAGGCCGCTGCATAAT 58.846 47.619 1.55 0.00 37.29 1.28
451 452 2.554032 GTGAATAGGCCGCTGCATAATT 59.446 45.455 1.55 0.00 37.29 1.40
452 453 3.004734 GTGAATAGGCCGCTGCATAATTT 59.995 43.478 1.55 0.00 37.29 1.82
453 454 3.004629 TGAATAGGCCGCTGCATAATTTG 59.995 43.478 1.55 0.00 37.29 2.32
467 468 4.990257 CATAATTTGCAACCACTGAGAGG 58.010 43.478 0.00 0.00 0.00 3.69
468 469 2.664402 ATTTGCAACCACTGAGAGGT 57.336 45.000 0.00 0.00 42.34 3.85
469 470 3.788227 ATTTGCAACCACTGAGAGGTA 57.212 42.857 1.00 0.00 38.76 3.08
470 471 3.569194 TTTGCAACCACTGAGAGGTAA 57.431 42.857 1.00 0.00 38.76 2.85
471 472 3.788227 TTGCAACCACTGAGAGGTAAT 57.212 42.857 1.00 0.00 38.76 1.89
472 473 3.788227 TGCAACCACTGAGAGGTAATT 57.212 42.857 1.00 0.00 38.76 1.40
473 474 3.411446 TGCAACCACTGAGAGGTAATTG 58.589 45.455 1.00 0.00 38.76 2.32
474 475 3.181445 TGCAACCACTGAGAGGTAATTGT 60.181 43.478 1.00 0.00 38.76 2.71
475 476 3.189287 GCAACCACTGAGAGGTAATTGTG 59.811 47.826 1.00 0.00 38.76 3.33
476 477 4.641396 CAACCACTGAGAGGTAATTGTGA 58.359 43.478 1.00 0.00 38.76 3.58
477 478 4.543590 ACCACTGAGAGGTAATTGTGAG 57.456 45.455 0.00 0.00 37.67 3.51
478 479 3.265791 CCACTGAGAGGTAATTGTGAGC 58.734 50.000 0.00 0.00 0.00 4.26
479 480 3.306989 CCACTGAGAGGTAATTGTGAGCA 60.307 47.826 0.00 0.00 0.00 4.26
480 481 3.931468 CACTGAGAGGTAATTGTGAGCAG 59.069 47.826 0.00 0.00 0.00 4.24
481 482 3.055530 ACTGAGAGGTAATTGTGAGCAGG 60.056 47.826 0.00 0.00 0.00 4.85
482 483 3.173151 TGAGAGGTAATTGTGAGCAGGA 58.827 45.455 0.00 0.00 0.00 3.86
483 484 3.776969 TGAGAGGTAATTGTGAGCAGGAT 59.223 43.478 0.00 0.00 0.00 3.24
484 485 4.141846 TGAGAGGTAATTGTGAGCAGGATC 60.142 45.833 0.00 0.00 0.00 3.36
485 486 3.776969 AGAGGTAATTGTGAGCAGGATCA 59.223 43.478 0.00 0.00 0.00 2.92
486 487 4.225942 AGAGGTAATTGTGAGCAGGATCAA 59.774 41.667 0.00 0.00 0.00 2.57
487 488 4.922206 AGGTAATTGTGAGCAGGATCAAA 58.078 39.130 0.00 0.00 0.00 2.69
488 489 5.513233 AGGTAATTGTGAGCAGGATCAAAT 58.487 37.500 0.00 0.00 0.00 2.32
489 490 5.591877 AGGTAATTGTGAGCAGGATCAAATC 59.408 40.000 0.00 0.00 0.00 2.17
490 491 4.627611 AATTGTGAGCAGGATCAAATCG 57.372 40.909 0.00 0.00 0.00 3.34
491 492 2.028420 TGTGAGCAGGATCAAATCGG 57.972 50.000 0.00 0.00 0.00 4.18
492 493 1.303309 GTGAGCAGGATCAAATCGGG 58.697 55.000 0.00 0.00 0.00 5.14
493 494 0.464373 TGAGCAGGATCAAATCGGGC 60.464 55.000 0.00 0.00 0.00 6.13
494 495 0.464373 GAGCAGGATCAAATCGGGCA 60.464 55.000 0.00 0.00 33.23 5.36
495 496 0.749454 AGCAGGATCAAATCGGGCAC 60.749 55.000 0.00 0.00 33.23 5.01
496 497 0.749454 GCAGGATCAAATCGGGCACT 60.749 55.000 0.00 0.00 0.00 4.40
497 498 1.019673 CAGGATCAAATCGGGCACTG 58.980 55.000 0.00 0.00 0.00 3.66
505 506 4.713946 TCGGGCACTGACCATTTC 57.286 55.556 0.64 0.00 39.80 2.17
506 507 1.002624 TCGGGCACTGACCATTTCC 60.003 57.895 0.64 0.00 39.80 3.13
507 508 2.398554 CGGGCACTGACCATTTCCG 61.399 63.158 0.64 0.00 36.31 4.30
508 509 1.303317 GGGCACTGACCATTTCCGT 60.303 57.895 0.00 0.00 0.00 4.69
509 510 0.035820 GGGCACTGACCATTTCCGTA 60.036 55.000 0.00 0.00 0.00 4.02
510 511 1.408266 GGGCACTGACCATTTCCGTAT 60.408 52.381 0.00 0.00 0.00 3.06
511 512 1.670811 GGCACTGACCATTTCCGTATG 59.329 52.381 0.00 0.00 0.00 2.39
512 513 1.064060 GCACTGACCATTTCCGTATGC 59.936 52.381 0.00 0.00 0.00 3.14
513 514 1.670811 CACTGACCATTTCCGTATGCC 59.329 52.381 0.00 0.00 0.00 4.40
514 515 1.308998 CTGACCATTTCCGTATGCCC 58.691 55.000 0.00 0.00 0.00 5.36
515 516 0.462937 TGACCATTTCCGTATGCCCG 60.463 55.000 0.00 0.00 0.00 6.13
516 517 0.463116 GACCATTTCCGTATGCCCGT 60.463 55.000 0.00 0.00 0.00 5.28
517 518 0.034863 ACCATTTCCGTATGCCCGTT 60.035 50.000 0.00 0.00 0.00 4.44
518 519 1.099689 CCATTTCCGTATGCCCGTTT 58.900 50.000 0.00 0.00 0.00 3.60
519 520 2.290464 CCATTTCCGTATGCCCGTTTA 58.710 47.619 0.00 0.00 0.00 2.01
520 521 2.289547 CCATTTCCGTATGCCCGTTTAG 59.710 50.000 0.00 0.00 0.00 1.85
521 522 3.199677 CATTTCCGTATGCCCGTTTAGA 58.800 45.455 0.00 0.00 0.00 2.10
522 523 3.331478 TTTCCGTATGCCCGTTTAGAA 57.669 42.857 0.00 0.00 0.00 2.10
523 524 2.298411 TCCGTATGCCCGTTTAGAAC 57.702 50.000 0.00 0.00 0.00 3.01
524 525 1.134729 TCCGTATGCCCGTTTAGAACC 60.135 52.381 0.00 0.00 0.00 3.62
525 526 1.292992 CGTATGCCCGTTTAGAACCC 58.707 55.000 0.00 0.00 0.00 4.11
526 527 1.292992 GTATGCCCGTTTAGAACCCG 58.707 55.000 0.00 0.00 0.00 5.28
527 528 1.134729 GTATGCCCGTTTAGAACCCGA 60.135 52.381 0.00 0.00 0.00 5.14
528 529 0.325602 ATGCCCGTTTAGAACCCGAA 59.674 50.000 0.00 0.00 0.00 4.30
529 530 0.325602 TGCCCGTTTAGAACCCGAAT 59.674 50.000 0.00 0.00 0.00 3.34
530 531 1.012086 GCCCGTTTAGAACCCGAATC 58.988 55.000 0.00 0.00 0.00 2.52
531 532 1.660167 CCCGTTTAGAACCCGAATCC 58.340 55.000 0.00 0.00 0.00 3.01
532 533 1.065998 CCCGTTTAGAACCCGAATCCA 60.066 52.381 0.00 0.00 0.00 3.41
533 534 2.277084 CCGTTTAGAACCCGAATCCAG 58.723 52.381 0.00 0.00 0.00 3.86
534 535 1.664151 CGTTTAGAACCCGAATCCAGC 59.336 52.381 0.00 0.00 0.00 4.85
535 536 2.677037 CGTTTAGAACCCGAATCCAGCT 60.677 50.000 0.00 0.00 0.00 4.24
536 537 2.678336 GTTTAGAACCCGAATCCAGCTG 59.322 50.000 6.78 6.78 0.00 4.24
537 538 1.860641 TAGAACCCGAATCCAGCTGA 58.139 50.000 17.39 1.21 0.00 4.26
538 539 0.539051 AGAACCCGAATCCAGCTGAG 59.461 55.000 17.39 5.49 0.00 3.35
539 540 0.462759 GAACCCGAATCCAGCTGAGG 60.463 60.000 17.39 9.96 0.00 3.86
540 541 0.909610 AACCCGAATCCAGCTGAGGA 60.910 55.000 17.39 5.01 43.01 3.71
541 542 0.909610 ACCCGAATCCAGCTGAGGAA 60.910 55.000 17.39 0.00 41.92 3.36
542 543 0.253044 CCCGAATCCAGCTGAGGAAA 59.747 55.000 17.39 0.00 41.92 3.13
543 544 1.133976 CCCGAATCCAGCTGAGGAAAT 60.134 52.381 17.39 0.00 41.92 2.17
544 545 1.945394 CCGAATCCAGCTGAGGAAATG 59.055 52.381 17.39 0.00 41.92 2.32
545 546 1.945394 CGAATCCAGCTGAGGAAATGG 59.055 52.381 17.39 0.00 41.92 3.16
546 547 2.305009 GAATCCAGCTGAGGAAATGGG 58.695 52.381 17.39 0.00 41.92 4.00
547 548 0.106318 ATCCAGCTGAGGAAATGGGC 60.106 55.000 17.39 0.00 41.92 5.36
548 549 1.755783 CCAGCTGAGGAAATGGGCC 60.756 63.158 17.39 0.00 0.00 5.80
549 550 1.000521 CAGCTGAGGAAATGGGCCA 60.001 57.895 9.61 9.61 0.00 5.36
550 551 1.035932 CAGCTGAGGAAATGGGCCAG 61.036 60.000 13.78 0.00 0.00 4.85
551 552 1.210204 AGCTGAGGAAATGGGCCAGA 61.210 55.000 13.78 0.00 0.00 3.86
552 553 0.323725 GCTGAGGAAATGGGCCAGAA 60.324 55.000 13.78 0.00 0.00 3.02
553 554 1.467920 CTGAGGAAATGGGCCAGAAC 58.532 55.000 13.78 5.19 0.00 3.01
554 555 0.776810 TGAGGAAATGGGCCAGAACA 59.223 50.000 13.78 3.50 0.00 3.18
555 556 1.358787 TGAGGAAATGGGCCAGAACAT 59.641 47.619 13.78 2.65 0.00 2.71
556 557 2.580322 TGAGGAAATGGGCCAGAACATA 59.420 45.455 13.78 0.00 0.00 2.29
557 558 3.011144 TGAGGAAATGGGCCAGAACATAA 59.989 43.478 13.78 0.00 0.00 1.90
558 559 3.365472 AGGAAATGGGCCAGAACATAAC 58.635 45.455 13.78 0.00 0.00 1.89
559 560 2.430694 GGAAATGGGCCAGAACATAACC 59.569 50.000 13.78 3.10 0.00 2.85
560 561 2.159179 AATGGGCCAGAACATAACCC 57.841 50.000 13.78 0.00 41.24 4.11
561 562 0.106719 ATGGGCCAGAACATAACCCG 60.107 55.000 13.78 0.00 44.00 5.28
562 563 1.453197 GGGCCAGAACATAACCCGG 60.453 63.158 4.39 0.00 0.00 5.73
563 564 1.605453 GGCCAGAACATAACCCGGA 59.395 57.895 0.73 0.00 0.00 5.14
564 565 0.034863 GGCCAGAACATAACCCGGAA 60.035 55.000 0.73 0.00 0.00 4.30
565 566 1.379527 GCCAGAACATAACCCGGAAG 58.620 55.000 0.73 0.00 0.00 3.46
577 578 3.987404 CGGAAGGGAAACAGCTGG 58.013 61.111 19.93 0.00 0.00 4.85
578 579 2.335712 CGGAAGGGAAACAGCTGGC 61.336 63.158 19.93 6.81 0.00 4.85
579 580 1.979155 GGAAGGGAAACAGCTGGCC 60.979 63.158 19.93 15.66 0.00 5.36
580 581 2.282462 AAGGGAAACAGCTGGCCG 60.282 61.111 19.93 0.00 0.00 6.13
583 584 3.294493 GGAAACAGCTGGCCGCAA 61.294 61.111 19.93 0.00 42.61 4.85
584 585 2.727544 GAAACAGCTGGCCGCAAA 59.272 55.556 19.93 0.00 42.61 3.68
585 586 1.067250 GAAACAGCTGGCCGCAAAA 59.933 52.632 19.93 0.00 42.61 2.44
586 587 0.319813 GAAACAGCTGGCCGCAAAAT 60.320 50.000 19.93 5.33 42.61 1.82
587 588 0.106521 AAACAGCTGGCCGCAAAATT 59.893 45.000 19.93 0.00 42.61 1.82
588 589 0.106521 AACAGCTGGCCGCAAAATTT 59.893 45.000 19.93 0.00 42.61 1.82
589 590 0.600782 ACAGCTGGCCGCAAAATTTG 60.601 50.000 19.93 0.57 42.61 2.32
590 591 0.319727 CAGCTGGCCGCAAAATTTGA 60.320 50.000 19.30 0.00 42.61 2.69
591 592 0.037975 AGCTGGCCGCAAAATTTGAG 60.038 50.000 19.30 6.17 42.61 3.02
592 593 1.629345 GCTGGCCGCAAAATTTGAGC 61.629 55.000 10.26 10.83 38.92 4.26
593 594 0.037975 CTGGCCGCAAAATTTGAGCT 60.038 50.000 10.26 0.00 33.55 4.09
594 595 0.038343 TGGCCGCAAAATTTGAGCTC 60.038 50.000 10.26 6.82 33.55 4.09
595 596 0.038343 GGCCGCAAAATTTGAGCTCA 60.038 50.000 13.74 13.74 33.55 4.26
596 597 1.404583 GGCCGCAAAATTTGAGCTCAT 60.405 47.619 19.04 0.00 33.55 2.90
597 598 2.340337 GCCGCAAAATTTGAGCTCATT 58.660 42.857 19.04 7.03 0.00 2.57
598 599 3.510719 GCCGCAAAATTTGAGCTCATTA 58.489 40.909 19.04 9.45 0.00 1.90
599 600 3.304293 GCCGCAAAATTTGAGCTCATTAC 59.696 43.478 19.04 2.50 0.00 1.89
600 601 4.737054 CCGCAAAATTTGAGCTCATTACT 58.263 39.130 19.04 0.00 0.00 2.24
601 602 5.676079 GCCGCAAAATTTGAGCTCATTACTA 60.676 40.000 19.04 0.00 0.00 1.82
602 603 6.321717 CCGCAAAATTTGAGCTCATTACTAA 58.678 36.000 19.04 8.86 0.00 2.24
603 604 6.974622 CCGCAAAATTTGAGCTCATTACTAAT 59.025 34.615 19.04 10.99 0.00 1.73
604 605 7.043854 CCGCAAAATTTGAGCTCATTACTAATG 60.044 37.037 19.04 11.84 40.28 1.90
605 606 7.485913 CGCAAAATTTGAGCTCATTACTAATGT 59.514 33.333 19.04 6.08 39.87 2.71
606 607 9.787532 GCAAAATTTGAGCTCATTACTAATGTA 57.212 29.630 19.04 0.00 39.87 2.29
611 612 8.893219 TTTGAGCTCATTACTAATGTATCAGG 57.107 34.615 19.04 0.00 39.87 3.86
612 613 6.459066 TGAGCTCATTACTAATGTATCAGGC 58.541 40.000 13.74 5.58 39.87 4.85
613 614 6.268617 TGAGCTCATTACTAATGTATCAGGCT 59.731 38.462 13.74 9.03 39.87 4.58
614 615 7.072263 AGCTCATTACTAATGTATCAGGCTT 57.928 36.000 8.37 0.00 39.87 4.35
615 616 8.195165 AGCTCATTACTAATGTATCAGGCTTA 57.805 34.615 8.37 0.00 39.87 3.09
616 617 8.820831 AGCTCATTACTAATGTATCAGGCTTAT 58.179 33.333 8.37 0.00 39.87 1.73
617 618 9.442047 GCTCATTACTAATGTATCAGGCTTATT 57.558 33.333 8.37 0.00 39.87 1.40
656 657 9.803315 TTGCTTTATGTGTGTTTAAAATGTACA 57.197 25.926 0.00 0.00 0.00 2.90
657 658 9.239002 TGCTTTATGTGTGTTTAAAATGTACAC 57.761 29.630 0.00 14.42 41.85 2.90
658 659 9.458374 GCTTTATGTGTGTTTAAAATGTACACT 57.542 29.630 18.70 0.00 41.98 3.55
724 725 7.875327 AGTATTTACATATTCGGTTGGCTTT 57.125 32.000 0.00 0.00 0.00 3.51
725 726 7.703328 AGTATTTACATATTCGGTTGGCTTTG 58.297 34.615 0.00 0.00 0.00 2.77
726 727 6.767524 ATTTACATATTCGGTTGGCTTTGA 57.232 33.333 0.00 0.00 0.00 2.69
727 728 5.811399 TTACATATTCGGTTGGCTTTGAG 57.189 39.130 0.00 0.00 0.00 3.02
728 729 3.950397 ACATATTCGGTTGGCTTTGAGA 58.050 40.909 0.00 0.00 0.00 3.27
737 743 3.308046 GGTTGGCTTTGAGAAGGAGAGAT 60.308 47.826 0.00 0.00 33.34 2.75
787 793 2.016393 TAGAATCGGGCGCTCACCAG 62.016 60.000 8.62 0.00 0.00 4.00
828 838 4.138487 ACCCGAATCCACTAGATGAAAC 57.862 45.455 0.00 0.00 34.56 2.78
839 849 5.337330 CCACTAGATGAAACGGGTTAGAACT 60.337 44.000 0.00 0.00 0.00 3.01
851 862 2.038164 GGTTAGAACTGAACCCGGAAGT 59.962 50.000 0.73 0.00 40.51 3.01
875 886 2.626780 GGGACAGCTGGCCGAAAAC 61.627 63.158 32.34 14.56 47.00 2.43
1093 1123 2.203640 TCCTCACCCTGACGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
1329 1376 0.889306 AGTTCCTGCTCTACGTGGTC 59.111 55.000 0.00 0.00 0.00 4.02
1333 1380 1.139734 CTGCTCTACGTGGTCGCAT 59.860 57.895 15.84 0.00 41.18 4.73
1337 1384 0.867753 CTCTACGTGGTCGCATCTGC 60.868 60.000 0.00 0.00 41.18 4.26
1401 4930 4.098914 AGCACCTGTAACATTTCCTTCA 57.901 40.909 0.00 0.00 0.00 3.02
1438 4968 2.392662 AGATAGGCAGCAAGCTAGTGA 58.607 47.619 0.00 0.00 44.79 3.41
1459 4989 8.165239 AGTGACTGAGCTCTAGATTAATACAG 57.835 38.462 16.19 2.11 0.00 2.74
1460 4990 7.777910 AGTGACTGAGCTCTAGATTAATACAGT 59.222 37.037 16.19 5.62 38.48 3.55
1461 4991 9.058174 GTGACTGAGCTCTAGATTAATACAGTA 57.942 37.037 16.19 0.00 36.45 2.74
1462 4992 9.058174 TGACTGAGCTCTAGATTAATACAGTAC 57.942 37.037 16.19 1.82 36.45 2.73
1463 4993 9.280174 GACTGAGCTCTAGATTAATACAGTACT 57.720 37.037 16.19 0.00 36.45 2.73
1464 4994 9.062524 ACTGAGCTCTAGATTAATACAGTACTG 57.937 37.037 21.44 21.44 34.95 2.74
1465 4995 8.982091 TGAGCTCTAGATTAATACAGTACTGT 57.018 34.615 30.13 30.13 46.87 3.55
1496 5026 9.109533 CATAAACAAAATTTACGTGTCCACTAC 57.890 33.333 0.00 0.00 0.00 2.73
1498 5028 6.930667 ACAAAATTTACGTGTCCACTACTT 57.069 33.333 0.00 0.00 0.00 2.24
1508 5038 9.762933 TTACGTGTCCACTACTTTAATTAAGTT 57.237 29.630 0.00 0.00 44.73 2.66
1509 5039 8.080083 ACGTGTCCACTACTTTAATTAAGTTG 57.920 34.615 0.00 3.63 44.73 3.16
1510 5040 7.013529 CGTGTCCACTACTTTAATTAAGTTGC 58.986 38.462 0.00 0.00 44.73 4.17
1511 5041 7.303261 GTGTCCACTACTTTAATTAAGTTGCC 58.697 38.462 0.00 0.00 44.73 4.52
1512 5042 6.999272 TGTCCACTACTTTAATTAAGTTGCCA 59.001 34.615 0.00 0.00 44.73 4.92
1513 5043 7.502895 TGTCCACTACTTTAATTAAGTTGCCAA 59.497 33.333 0.00 0.00 44.73 4.52
1514 5044 8.354426 GTCCACTACTTTAATTAAGTTGCCAAA 58.646 33.333 0.00 0.00 44.73 3.28
1515 5045 8.354426 TCCACTACTTTAATTAAGTTGCCAAAC 58.646 33.333 0.00 0.00 44.73 2.93
1516 5046 8.138712 CCACTACTTTAATTAAGTTGCCAAACA 58.861 33.333 0.00 0.00 44.73 2.83
1517 5047 9.522804 CACTACTTTAATTAAGTTGCCAAACAA 57.477 29.630 0.00 0.00 44.73 2.83
1627 5157 3.905968 TCCATACTCATGTCCCTCGTTA 58.094 45.455 0.00 0.00 0.00 3.18
1878 5408 4.082190 TGTCATTCCAGCTGTAGTACTGAC 60.082 45.833 13.81 15.24 35.90 3.51
1932 5462 2.287970 ACATGACTCACGTCGCAAACTA 60.288 45.455 0.00 0.00 43.21 2.24
1981 5511 7.078249 TCTAGGAGCCATATTATTTTCAGCA 57.922 36.000 0.00 0.00 0.00 4.41
2220 5754 1.228245 TTGTGCTGAGAGGCCAACC 60.228 57.895 5.01 0.00 0.00 3.77
2249 5783 4.455877 AGTTCTACTGTATGCCTTTGTTGC 59.544 41.667 0.00 0.00 0.00 4.17
2361 5895 7.530426 AAATACAACTCATTTGCCTCTTCTT 57.470 32.000 0.00 0.00 39.01 2.52
2366 5900 6.547510 ACAACTCATTTGCCTCTTCTTAACTT 59.452 34.615 0.00 0.00 39.01 2.66
2373 5907 5.590530 TGCCTCTTCTTAACTTTTTGCAA 57.409 34.783 0.00 0.00 0.00 4.08
2386 5920 5.109210 ACTTTTTGCAAGCACCTTTCTTAC 58.891 37.500 0.00 0.00 0.00 2.34
2401 5935 5.474876 CCTTTCTTACAAGCATGAGGTTTCT 59.525 40.000 0.00 0.00 32.07 2.52
2408 5942 5.625150 ACAAGCATGAGGTTTCTAGTTTCT 58.375 37.500 0.00 0.00 32.07 2.52
2409 5943 5.471456 ACAAGCATGAGGTTTCTAGTTTCTG 59.529 40.000 0.00 0.00 32.07 3.02
2410 5944 5.489792 AGCATGAGGTTTCTAGTTTCTGA 57.510 39.130 0.00 0.00 0.00 3.27
2412 5946 6.479884 AGCATGAGGTTTCTAGTTTCTGAAT 58.520 36.000 0.00 0.00 0.00 2.57
2413 5947 6.597280 AGCATGAGGTTTCTAGTTTCTGAATC 59.403 38.462 0.00 0.00 0.00 2.52
2419 5999 5.480205 GTTTCTAGTTTCTGAATCCCGAGT 58.520 41.667 0.00 0.00 0.00 4.18
2426 6006 4.884668 TTCTGAATCCCGAGTAACACTT 57.115 40.909 0.00 0.00 0.00 3.16
2481 6061 2.171237 TCATGCATCCCAGTTAGTCCTG 59.829 50.000 0.00 0.00 0.00 3.86
2492 6073 4.241681 CAGTTAGTCCTGCAAGAGAGTTC 58.758 47.826 0.00 0.00 34.07 3.01
2494 6075 4.219725 AGTTAGTCCTGCAAGAGAGTTCTC 59.780 45.833 0.80 0.80 43.17 2.87
2507 6088 3.993736 GAGAGTTCTCTTTCTTGGCTGTC 59.006 47.826 3.77 0.00 39.81 3.51
2537 6118 9.057089 AGATGTTAGCTAATATTTAAGTGGTGC 57.943 33.333 15.87 1.23 0.00 5.01
2538 6119 8.746052 ATGTTAGCTAATATTTAAGTGGTGCA 57.254 30.769 9.88 0.00 0.00 4.57
2539 6120 8.746052 TGTTAGCTAATATTTAAGTGGTGCAT 57.254 30.769 9.88 0.00 0.00 3.96
2540 6121 9.184523 TGTTAGCTAATATTTAAGTGGTGCATT 57.815 29.630 9.88 0.00 0.00 3.56
2543 6124 8.980481 AGCTAATATTTAAGTGGTGCATTAGT 57.020 30.769 0.00 0.00 30.67 2.24
2544 6125 9.057089 AGCTAATATTTAAGTGGTGCATTAGTC 57.943 33.333 0.00 0.00 30.67 2.59
2545 6126 9.057089 GCTAATATTTAAGTGGTGCATTAGTCT 57.943 33.333 0.00 0.00 30.67 3.24
2547 6128 8.451908 AATATTTAAGTGGTGCATTAGTCTCC 57.548 34.615 0.00 0.00 0.00 3.71
2548 6129 4.901197 TTAAGTGGTGCATTAGTCTCCA 57.099 40.909 0.00 0.00 0.00 3.86
2549 6130 5.435686 TTAAGTGGTGCATTAGTCTCCAT 57.564 39.130 0.00 0.00 0.00 3.41
2550 6131 6.553953 TTAAGTGGTGCATTAGTCTCCATA 57.446 37.500 0.00 0.00 0.00 2.74
2551 6132 4.679373 AGTGGTGCATTAGTCTCCATAG 57.321 45.455 0.00 0.00 0.00 2.23
2552 6133 3.134458 GTGGTGCATTAGTCTCCATAGC 58.866 50.000 0.00 0.00 0.00 2.97
2553 6134 3.041211 TGGTGCATTAGTCTCCATAGCT 58.959 45.455 0.00 0.00 0.00 3.32
2554 6135 3.070159 TGGTGCATTAGTCTCCATAGCTC 59.930 47.826 0.00 0.00 0.00 4.09
2555 6136 3.070159 GGTGCATTAGTCTCCATAGCTCA 59.930 47.826 0.00 0.00 0.00 4.26
2556 6137 4.305769 GTGCATTAGTCTCCATAGCTCAG 58.694 47.826 0.00 0.00 0.00 3.35
2557 6138 3.323115 TGCATTAGTCTCCATAGCTCAGG 59.677 47.826 0.00 0.00 0.00 3.86
2558 6139 3.576118 GCATTAGTCTCCATAGCTCAGGA 59.424 47.826 6.85 6.85 0.00 3.86
2587 6168 3.874543 TGTTTATCCATCGAAATCCACCG 59.125 43.478 0.00 0.00 0.00 4.94
2594 6175 1.717194 TCGAAATCCACCGTAAGTGC 58.283 50.000 0.00 0.00 45.83 4.40
2596 6177 1.393539 CGAAATCCACCGTAAGTGCTG 59.606 52.381 0.00 0.00 45.83 4.41
2597 6178 1.130561 GAAATCCACCGTAAGTGCTGC 59.869 52.381 0.00 0.00 45.83 5.25
2599 6180 3.788766 CCACCGTAAGTGCTGCGC 61.789 66.667 4.76 4.76 45.83 6.09
2604 6185 2.027073 CGTAAGTGCTGCGCCTCAA 61.027 57.895 9.97 0.00 0.00 3.02
2623 6204 4.227197 TCAAATTTCAAAGGGCTGGGTTA 58.773 39.130 0.00 0.00 0.00 2.85
2625 6206 5.309282 TCAAATTTCAAAGGGCTGGGTTATT 59.691 36.000 0.00 0.00 0.00 1.40
2679 6372 7.478520 TTCAAGTCAGTAAACTCAGTAAAGC 57.521 36.000 0.00 0.00 0.00 3.51
2691 6384 4.277672 ACTCAGTAAAGCAGTCGACACTTA 59.722 41.667 19.50 6.46 0.00 2.24
2698 6391 4.595762 AGCAGTCGACACTTACCTTAAA 57.404 40.909 19.50 0.00 0.00 1.52
2700 6393 4.053295 GCAGTCGACACTTACCTTAAACA 58.947 43.478 19.50 0.00 0.00 2.83
2711 6404 8.427276 ACACTTACCTTAAACAGTAGCTACTTT 58.573 33.333 23.94 18.19 33.46 2.66
2712 6405 9.918630 CACTTACCTTAAACAGTAGCTACTTTA 57.081 33.333 23.94 17.18 33.46 1.85
2725 6418 6.926272 AGTAGCTACTTTATCTACTTGCATGC 59.074 38.462 20.95 11.82 39.78 4.06
2732 6425 1.155889 TCTACTTGCATGCGGTGTTG 58.844 50.000 21.26 15.79 0.00 3.33
2733 6426 0.874390 CTACTTGCATGCGGTGTTGT 59.126 50.000 21.26 12.28 0.00 3.32
2739 6432 0.456653 GCATGCGGTGTTGTTCCATC 60.457 55.000 0.00 0.00 0.00 3.51
2751 6444 6.348540 GGTGTTGTTCCATCTCATTTCTGTAC 60.349 42.308 0.00 0.00 0.00 2.90
2761 6454 4.997395 TCTCATTTCTGTACAAGTGCCTTC 59.003 41.667 0.00 0.00 0.00 3.46
2762 6455 4.713553 TCATTTCTGTACAAGTGCCTTCA 58.286 39.130 0.00 0.00 0.00 3.02
2766 6459 2.072298 CTGTACAAGTGCCTTCAGAGC 58.928 52.381 0.00 0.00 0.00 4.09
2778 6471 3.881688 GCCTTCAGAGCACATATGTTGAT 59.118 43.478 5.37 0.48 0.00 2.57
2779 6472 5.059161 GCCTTCAGAGCACATATGTTGATA 58.941 41.667 5.37 0.00 0.00 2.15
2789 6482 9.212641 GAGCACATATGTTGATATTGTAGTGAT 57.787 33.333 5.37 0.00 0.00 3.06
2868 6669 4.341806 TGGGGATGATTGCATAATGACAAC 59.658 41.667 0.00 0.00 34.11 3.32
2889 6690 7.989826 ACAACTATATTTCATTCAGACAAGCC 58.010 34.615 0.00 0.00 0.00 4.35
2915 6716 6.154877 ACATGATGCCATTAGTTCCATTGAAA 59.845 34.615 0.00 0.00 30.79 2.69
2929 6730 9.933723 AGTTCCATTGAAATTTTCTTATTCTGG 57.066 29.630 10.33 7.81 30.79 3.86
2930 6731 9.710900 GTTCCATTGAAATTTTCTTATTCTGGT 57.289 29.630 10.33 0.00 30.79 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.980423 AACTGCTCCCAGAACTCCTC 59.020 55.000 0.00 0.00 41.77 3.71
1 2 0.980423 GAACTGCTCCCAGAACTCCT 59.020 55.000 0.00 0.00 41.77 3.69
2 3 0.035915 GGAACTGCTCCCAGAACTCC 60.036 60.000 0.00 0.00 41.77 3.85
3 4 0.390472 CGGAACTGCTCCCAGAACTC 60.390 60.000 0.00 0.00 41.87 3.01
4 5 1.122019 ACGGAACTGCTCCCAGAACT 61.122 55.000 0.00 0.00 41.87 3.01
5 6 0.606604 TACGGAACTGCTCCCAGAAC 59.393 55.000 0.00 0.00 41.87 3.01
6 7 0.895530 CTACGGAACTGCTCCCAGAA 59.104 55.000 0.00 0.00 41.87 3.02
7 8 1.605058 GCTACGGAACTGCTCCCAGA 61.605 60.000 0.00 0.00 41.87 3.86
8 9 1.153549 GCTACGGAACTGCTCCCAG 60.154 63.158 0.00 0.00 41.87 4.45
9 10 1.605058 GAGCTACGGAACTGCTCCCA 61.605 60.000 0.00 0.00 45.12 4.37
10 11 1.142097 GAGCTACGGAACTGCTCCC 59.858 63.158 0.00 0.00 45.12 4.30
11 12 4.816990 GAGCTACGGAACTGCTCC 57.183 61.111 0.00 0.00 45.12 4.70
13 14 1.038130 ATCGGAGCTACGGAACTGCT 61.038 55.000 20.39 0.00 40.02 4.24
14 15 0.872021 CATCGGAGCTACGGAACTGC 60.872 60.000 20.39 0.00 0.00 4.40
15 16 0.738975 TCATCGGAGCTACGGAACTG 59.261 55.000 20.39 11.28 0.00 3.16
16 17 1.025812 CTCATCGGAGCTACGGAACT 58.974 55.000 20.39 0.00 33.67 3.01
17 18 0.030908 CCTCATCGGAGCTACGGAAC 59.969 60.000 20.39 0.00 39.96 3.62
18 19 0.106868 TCCTCATCGGAGCTACGGAA 60.107 55.000 20.39 0.00 39.96 4.30
19 20 1.530283 TCCTCATCGGAGCTACGGA 59.470 57.895 20.39 7.90 39.96 4.69
20 21 4.159266 TCCTCATCGGAGCTACGG 57.841 61.111 20.39 2.85 39.96 4.02
27 28 6.839454 ACTAGATAAACTACTCCTCATCGGA 58.161 40.000 0.00 0.00 40.30 4.55
28 29 7.879160 ACTACTAGATAAACTACTCCTCATCGG 59.121 40.741 0.00 0.00 0.00 4.18
29 30 8.836268 ACTACTAGATAAACTACTCCTCATCG 57.164 38.462 0.00 0.00 0.00 3.84
32 33 9.970553 TCAAACTACTAGATAAACTACTCCTCA 57.029 33.333 0.00 0.00 0.00 3.86
46 47 9.856488 CAACTACTGCTTATTCAAACTACTAGA 57.144 33.333 0.00 0.00 0.00 2.43
47 48 9.856488 TCAACTACTGCTTATTCAAACTACTAG 57.144 33.333 0.00 0.00 0.00 2.57
49 50 9.209175 CTTCAACTACTGCTTATTCAAACTACT 57.791 33.333 0.00 0.00 0.00 2.57
50 51 8.989980 ACTTCAACTACTGCTTATTCAAACTAC 58.010 33.333 0.00 0.00 0.00 2.73
51 52 9.555727 AACTTCAACTACTGCTTATTCAAACTA 57.444 29.630 0.00 0.00 0.00 2.24
52 53 8.345565 CAACTTCAACTACTGCTTATTCAAACT 58.654 33.333 0.00 0.00 0.00 2.66
53 54 8.342634 TCAACTTCAACTACTGCTTATTCAAAC 58.657 33.333 0.00 0.00 0.00 2.93
54 55 8.445275 TCAACTTCAACTACTGCTTATTCAAA 57.555 30.769 0.00 0.00 0.00 2.69
55 56 8.506437 CATCAACTTCAACTACTGCTTATTCAA 58.494 33.333 0.00 0.00 0.00 2.69
56 57 7.661437 ACATCAACTTCAACTACTGCTTATTCA 59.339 33.333 0.00 0.00 0.00 2.57
57 58 8.034058 ACATCAACTTCAACTACTGCTTATTC 57.966 34.615 0.00 0.00 0.00 1.75
58 59 7.986085 ACATCAACTTCAACTACTGCTTATT 57.014 32.000 0.00 0.00 0.00 1.40
59 60 9.102757 CATACATCAACTTCAACTACTGCTTAT 57.897 33.333 0.00 0.00 0.00 1.73
60 61 8.311109 TCATACATCAACTTCAACTACTGCTTA 58.689 33.333 0.00 0.00 0.00 3.09
61 62 7.161404 TCATACATCAACTTCAACTACTGCTT 58.839 34.615 0.00 0.00 0.00 3.91
62 63 6.701340 TCATACATCAACTTCAACTACTGCT 58.299 36.000 0.00 0.00 0.00 4.24
63 64 6.968131 TCATACATCAACTTCAACTACTGC 57.032 37.500 0.00 0.00 0.00 4.40
64 65 8.993121 AGTTTCATACATCAACTTCAACTACTG 58.007 33.333 0.00 0.00 0.00 2.74
68 69 9.507329 ACATAGTTTCATACATCAACTTCAACT 57.493 29.630 0.00 0.00 32.88 3.16
71 72 9.500785 TCAACATAGTTTCATACATCAACTTCA 57.499 29.630 0.00 0.00 32.88 3.02
91 92 9.985730 ACATAGTTCAAACATCAAATTCAACAT 57.014 25.926 0.00 0.00 0.00 2.71
92 93 9.814899 AACATAGTTCAAACATCAAATTCAACA 57.185 25.926 0.00 0.00 0.00 3.33
98 99 9.426837 CCATTCAACATAGTTCAAACATCAAAT 57.573 29.630 0.00 0.00 0.00 2.32
99 100 8.637099 TCCATTCAACATAGTTCAAACATCAAA 58.363 29.630 0.00 0.00 0.00 2.69
100 101 8.081633 GTCCATTCAACATAGTTCAAACATCAA 58.918 33.333 0.00 0.00 0.00 2.57
101 102 7.448161 AGTCCATTCAACATAGTTCAAACATCA 59.552 33.333 0.00 0.00 0.00 3.07
102 103 7.820648 AGTCCATTCAACATAGTTCAAACATC 58.179 34.615 0.00 0.00 0.00 3.06
103 104 7.765695 AGTCCATTCAACATAGTTCAAACAT 57.234 32.000 0.00 0.00 0.00 2.71
104 105 8.684386 TTAGTCCATTCAACATAGTTCAAACA 57.316 30.769 0.00 0.00 0.00 2.83
113 114 9.908152 CGACATACTATTAGTCCATTCAACATA 57.092 33.333 0.00 0.00 0.00 2.29
114 115 8.421784 ACGACATACTATTAGTCCATTCAACAT 58.578 33.333 0.00 0.00 0.00 2.71
115 116 7.778083 ACGACATACTATTAGTCCATTCAACA 58.222 34.615 0.00 0.00 0.00 3.33
116 117 8.644318 AACGACATACTATTAGTCCATTCAAC 57.356 34.615 0.00 0.00 0.00 3.18
117 118 9.661563 AAAACGACATACTATTAGTCCATTCAA 57.338 29.630 0.00 0.00 0.00 2.69
120 121 9.241317 CGTAAAACGACATACTATTAGTCCATT 57.759 33.333 0.00 0.00 46.05 3.16
121 122 7.380602 GCGTAAAACGACATACTATTAGTCCAT 59.619 37.037 3.22 0.00 46.05 3.41
122 123 6.692681 GCGTAAAACGACATACTATTAGTCCA 59.307 38.462 3.22 0.00 46.05 4.02
123 124 7.086947 GCGTAAAACGACATACTATTAGTCC 57.913 40.000 3.22 0.00 46.05 3.85
137 138 3.564644 TCCAAAATGAAGGCGTAAAACGA 59.435 39.130 3.22 0.00 46.05 3.85
138 139 3.666797 GTCCAAAATGAAGGCGTAAAACG 59.333 43.478 0.00 0.00 45.88 3.60
139 140 3.985279 GGTCCAAAATGAAGGCGTAAAAC 59.015 43.478 0.00 0.00 0.00 2.43
140 141 3.637229 TGGTCCAAAATGAAGGCGTAAAA 59.363 39.130 0.00 0.00 0.00 1.52
141 142 3.223435 TGGTCCAAAATGAAGGCGTAAA 58.777 40.909 0.00 0.00 0.00 2.01
142 143 2.865079 TGGTCCAAAATGAAGGCGTAA 58.135 42.857 0.00 0.00 0.00 3.18
143 144 2.570415 TGGTCCAAAATGAAGGCGTA 57.430 45.000 0.00 0.00 0.00 4.42
144 145 1.818674 GATGGTCCAAAATGAAGGCGT 59.181 47.619 0.00 0.00 0.00 5.68
145 146 2.094675 AGATGGTCCAAAATGAAGGCG 58.905 47.619 0.00 0.00 0.00 5.52
146 147 5.452356 CCAATAGATGGTCCAAAATGAAGGC 60.452 44.000 0.00 0.00 44.85 4.35
147 148 6.152932 CCAATAGATGGTCCAAAATGAAGG 57.847 41.667 0.00 0.00 44.85 3.46
161 162 5.649395 TCCAAAAGAGCAACTCCAATAGATG 59.351 40.000 0.00 0.00 0.00 2.90
162 163 5.649831 GTCCAAAAGAGCAACTCCAATAGAT 59.350 40.000 0.00 0.00 0.00 1.98
163 164 5.003804 GTCCAAAAGAGCAACTCCAATAGA 58.996 41.667 0.00 0.00 0.00 1.98
164 165 4.156739 GGTCCAAAAGAGCAACTCCAATAG 59.843 45.833 0.00 0.00 42.81 1.73
165 166 4.079253 GGTCCAAAAGAGCAACTCCAATA 58.921 43.478 0.00 0.00 42.81 1.90
166 167 2.893489 GGTCCAAAAGAGCAACTCCAAT 59.107 45.455 0.00 0.00 42.81 3.16
167 168 2.306847 GGTCCAAAAGAGCAACTCCAA 58.693 47.619 0.00 0.00 42.81 3.53
168 169 1.981256 GGTCCAAAAGAGCAACTCCA 58.019 50.000 0.00 0.00 42.81 3.86
175 176 4.021192 TCCAAATTGATGGTCCAAAAGAGC 60.021 41.667 0.00 0.00 41.46 4.09
176 177 5.473039 GTCCAAATTGATGGTCCAAAAGAG 58.527 41.667 0.00 0.00 41.46 2.85
177 178 4.283212 GGTCCAAATTGATGGTCCAAAAGA 59.717 41.667 0.00 0.00 44.93 2.52
178 179 4.568956 GGTCCAAATTGATGGTCCAAAAG 58.431 43.478 0.00 0.00 44.93 2.27
179 180 4.615588 GGTCCAAATTGATGGTCCAAAA 57.384 40.909 0.00 0.00 44.93 2.44
183 184 3.382546 CAGATGGTCCAAATTGATGGTCC 59.617 47.826 0.00 5.71 45.54 4.46
184 185 4.019174 ACAGATGGTCCAAATTGATGGTC 58.981 43.478 0.00 0.00 41.46 4.02
185 186 4.051661 ACAGATGGTCCAAATTGATGGT 57.948 40.909 0.00 0.00 41.46 3.55
186 187 4.382254 CCAACAGATGGTCCAAATTGATGG 60.382 45.833 12.44 12.44 44.85 3.51
187 188 4.751060 CCAACAGATGGTCCAAATTGATG 58.249 43.478 0.00 0.12 44.85 3.07
221 222 0.816018 TGCGTTTTGGAGCTCCGAAA 60.816 50.000 35.12 35.12 44.84 3.46
222 223 1.227704 TGCGTTTTGGAGCTCCGAA 60.228 52.632 28.68 28.68 39.43 4.30
223 224 1.959226 GTGCGTTTTGGAGCTCCGA 60.959 57.895 27.43 23.72 39.43 4.55
224 225 1.507141 AAGTGCGTTTTGGAGCTCCG 61.507 55.000 27.43 15.91 39.43 4.63
225 226 0.668535 AAAGTGCGTTTTGGAGCTCC 59.331 50.000 26.78 26.78 0.00 4.70
226 227 2.492019 AAAAGTGCGTTTTGGAGCTC 57.508 45.000 4.71 4.71 36.96 4.09
227 228 2.165437 TCAAAAAGTGCGTTTTGGAGCT 59.835 40.909 18.10 0.00 44.86 4.09
228 229 2.535331 TCAAAAAGTGCGTTTTGGAGC 58.465 42.857 18.10 0.00 44.86 4.70
229 230 3.490526 CCATCAAAAAGTGCGTTTTGGAG 59.509 43.478 18.10 12.64 44.86 3.86
230 231 3.118956 ACCATCAAAAAGTGCGTTTTGGA 60.119 39.130 18.10 10.54 44.86 3.53
231 232 3.194062 ACCATCAAAAAGTGCGTTTTGG 58.806 40.909 18.10 9.60 44.86 3.28
232 233 3.245048 GGACCATCAAAAAGTGCGTTTTG 59.755 43.478 14.16 14.16 45.71 2.44
233 234 3.118956 TGGACCATCAAAAAGTGCGTTTT 60.119 39.130 0.00 0.00 40.26 2.43
234 235 2.428890 TGGACCATCAAAAAGTGCGTTT 59.571 40.909 0.00 0.00 0.00 3.60
235 236 2.028130 TGGACCATCAAAAAGTGCGTT 58.972 42.857 0.00 0.00 0.00 4.84
236 237 1.686355 TGGACCATCAAAAAGTGCGT 58.314 45.000 0.00 0.00 0.00 5.24
237 238 2.791383 TTGGACCATCAAAAAGTGCG 57.209 45.000 0.00 0.00 0.00 5.34
238 239 6.375945 AAAATTTGGACCATCAAAAAGTGC 57.624 33.333 0.00 0.00 39.64 4.40
239 240 8.430801 TGTAAAATTTGGACCATCAAAAAGTG 57.569 30.769 0.00 0.00 39.64 3.16
240 241 9.271828 GATGTAAAATTTGGACCATCAAAAAGT 57.728 29.630 0.00 0.00 39.64 2.66
241 242 9.492973 AGATGTAAAATTTGGACCATCAAAAAG 57.507 29.630 15.87 0.00 39.64 2.27
242 243 9.487790 GAGATGTAAAATTTGGACCATCAAAAA 57.512 29.630 15.87 0.00 39.64 1.94
243 244 8.093927 GGAGATGTAAAATTTGGACCATCAAAA 58.906 33.333 15.87 0.00 39.64 2.44
244 245 7.576666 CGGAGATGTAAAATTTGGACCATCAAA 60.577 37.037 15.87 0.00 40.37 2.69
245 246 6.127758 CGGAGATGTAAAATTTGGACCATCAA 60.128 38.462 15.87 0.00 32.98 2.57
246 247 5.356751 CGGAGATGTAAAATTTGGACCATCA 59.643 40.000 15.87 0.00 32.98 3.07
247 248 5.221048 CCGGAGATGTAAAATTTGGACCATC 60.221 44.000 0.00 1.98 0.00 3.51
248 249 4.644685 CCGGAGATGTAAAATTTGGACCAT 59.355 41.667 0.00 0.00 0.00 3.55
249 250 4.013728 CCGGAGATGTAAAATTTGGACCA 58.986 43.478 0.00 0.00 0.00 4.02
250 251 4.014406 ACCGGAGATGTAAAATTTGGACC 58.986 43.478 9.46 0.00 0.00 4.46
251 252 5.638596 AACCGGAGATGTAAAATTTGGAC 57.361 39.130 9.46 0.00 0.00 4.02
252 253 6.451393 CAAAACCGGAGATGTAAAATTTGGA 58.549 36.000 9.46 0.00 0.00 3.53
253 254 5.637387 CCAAAACCGGAGATGTAAAATTTGG 59.363 40.000 9.46 8.70 0.00 3.28
254 255 6.364976 GTCCAAAACCGGAGATGTAAAATTTG 59.635 38.462 9.46 3.67 35.10 2.32
255 256 6.452242 GTCCAAAACCGGAGATGTAAAATTT 58.548 36.000 9.46 0.00 35.10 1.82
256 257 5.047590 GGTCCAAAACCGGAGATGTAAAATT 60.048 40.000 9.46 0.00 38.58 1.82
257 258 4.461431 GGTCCAAAACCGGAGATGTAAAAT 59.539 41.667 9.46 0.00 38.58 1.82
258 259 3.822167 GGTCCAAAACCGGAGATGTAAAA 59.178 43.478 9.46 0.00 38.58 1.52
259 260 3.414269 GGTCCAAAACCGGAGATGTAAA 58.586 45.455 9.46 0.00 38.58 2.01
260 261 3.062122 GGTCCAAAACCGGAGATGTAA 57.938 47.619 9.46 0.00 38.58 2.41
261 262 2.773993 GGTCCAAAACCGGAGATGTA 57.226 50.000 9.46 0.00 38.58 2.29
262 263 3.644861 GGTCCAAAACCGGAGATGT 57.355 52.632 9.46 0.00 38.58 3.06
275 276 1.069358 GGTTCAAAATTTGGCGGTCCA 59.931 47.619 5.83 0.00 41.55 4.02
276 277 1.069358 TGGTTCAAAATTTGGCGGTCC 59.931 47.619 5.83 3.05 0.00 4.46
277 278 2.517650 TGGTTCAAAATTTGGCGGTC 57.482 45.000 5.83 0.00 0.00 4.79
278 279 2.632512 AGATGGTTCAAAATTTGGCGGT 59.367 40.909 5.83 0.00 0.00 5.68
279 280 3.317603 AGATGGTTCAAAATTTGGCGG 57.682 42.857 5.83 0.00 0.00 6.13
280 281 5.291614 CCAATAGATGGTTCAAAATTTGGCG 59.708 40.000 5.83 0.00 44.85 5.69
281 282 6.667007 CCAATAGATGGTTCAAAATTTGGC 57.333 37.500 5.83 0.00 44.85 4.52
309 310 1.718757 CCCGCCAATGTGCTAAGAGC 61.719 60.000 0.00 0.00 42.82 4.09
310 311 1.718757 GCCCGCCAATGTGCTAAGAG 61.719 60.000 0.00 0.00 0.00 2.85
311 312 1.748879 GCCCGCCAATGTGCTAAGA 60.749 57.895 0.00 0.00 0.00 2.10
312 313 2.774799 GGCCCGCCAATGTGCTAAG 61.775 63.158 0.00 0.00 35.81 2.18
313 314 2.753849 GGCCCGCCAATGTGCTAA 60.754 61.111 0.00 0.00 35.81 3.09
314 315 3.280938 AAGGCCCGCCAATGTGCTA 62.281 57.895 8.74 0.00 38.92 3.49
315 316 4.684134 AAGGCCCGCCAATGTGCT 62.684 61.111 8.74 0.00 38.92 4.40
316 317 4.440127 CAAGGCCCGCCAATGTGC 62.440 66.667 8.74 0.00 38.92 4.57
317 318 3.762247 CCAAGGCCCGCCAATGTG 61.762 66.667 8.74 0.47 38.92 3.21
342 343 4.489771 CTTAGGGGTGCAGGGCGG 62.490 72.222 0.00 0.00 0.00 6.13
343 344 3.268103 AACTTAGGGGTGCAGGGCG 62.268 63.158 0.00 0.00 0.00 6.13
344 345 1.378646 GAACTTAGGGGTGCAGGGC 60.379 63.158 0.00 0.00 0.00 5.19
345 346 1.580059 TAGAACTTAGGGGTGCAGGG 58.420 55.000 0.00 0.00 0.00 4.45
346 347 2.746472 GCATAGAACTTAGGGGTGCAGG 60.746 54.545 0.00 0.00 0.00 4.85
347 348 2.092968 TGCATAGAACTTAGGGGTGCAG 60.093 50.000 0.00 0.00 36.33 4.41
348 349 1.912731 TGCATAGAACTTAGGGGTGCA 59.087 47.619 0.00 0.00 38.62 4.57
349 350 2.710096 TGCATAGAACTTAGGGGTGC 57.290 50.000 0.00 0.00 0.00 5.01
399 400 6.270064 CAGTTGTTAAACGAGATGGGTTTTT 58.730 36.000 0.00 0.00 41.45 1.94
400 401 5.735070 GCAGTTGTTAAACGAGATGGGTTTT 60.735 40.000 0.00 0.00 41.45 2.43
401 402 4.261447 GCAGTTGTTAAACGAGATGGGTTT 60.261 41.667 0.00 0.00 41.45 3.27
402 403 3.252458 GCAGTTGTTAAACGAGATGGGTT 59.748 43.478 0.00 0.00 41.45 4.11
403 404 2.812011 GCAGTTGTTAAACGAGATGGGT 59.188 45.455 0.00 0.00 41.45 4.51
404 405 3.074412 AGCAGTTGTTAAACGAGATGGG 58.926 45.455 0.00 0.00 41.45 4.00
405 406 4.749245 AAGCAGTTGTTAAACGAGATGG 57.251 40.909 0.00 0.00 41.45 3.51
406 407 4.840772 CGAAAGCAGTTGTTAAACGAGATG 59.159 41.667 0.00 0.00 41.45 2.90
407 408 4.084013 CCGAAAGCAGTTGTTAAACGAGAT 60.084 41.667 0.00 0.00 41.45 2.75
408 409 3.246699 CCGAAAGCAGTTGTTAAACGAGA 59.753 43.478 0.00 0.00 41.45 4.04
409 410 3.001939 ACCGAAAGCAGTTGTTAAACGAG 59.998 43.478 0.00 0.00 41.45 4.18
410 411 2.937799 ACCGAAAGCAGTTGTTAAACGA 59.062 40.909 0.00 0.00 41.45 3.85
411 412 3.033185 CACCGAAAGCAGTTGTTAAACG 58.967 45.455 0.00 0.00 41.45 3.60
412 413 4.281525 TCACCGAAAGCAGTTGTTAAAC 57.718 40.909 0.00 0.00 36.47 2.01
413 414 4.966965 TTCACCGAAAGCAGTTGTTAAA 57.033 36.364 0.00 0.00 0.00 1.52
414 415 5.180492 CCTATTCACCGAAAGCAGTTGTTAA 59.820 40.000 0.00 0.00 0.00 2.01
415 416 4.693566 CCTATTCACCGAAAGCAGTTGTTA 59.306 41.667 0.00 0.00 0.00 2.41
416 417 3.502211 CCTATTCACCGAAAGCAGTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
417 418 3.074412 CCTATTCACCGAAAGCAGTTGT 58.926 45.455 0.00 0.00 0.00 3.32
418 419 2.159517 GCCTATTCACCGAAAGCAGTTG 60.160 50.000 0.00 0.00 0.00 3.16
419 420 2.084546 GCCTATTCACCGAAAGCAGTT 58.915 47.619 0.00 0.00 0.00 3.16
420 421 1.679032 GGCCTATTCACCGAAAGCAGT 60.679 52.381 0.00 0.00 0.00 4.40
421 422 1.017387 GGCCTATTCACCGAAAGCAG 58.983 55.000 0.00 0.00 0.00 4.24
422 423 3.168773 GGCCTATTCACCGAAAGCA 57.831 52.632 0.00 0.00 0.00 3.91
429 430 0.250295 TATGCAGCGGCCTATTCACC 60.250 55.000 6.32 0.00 40.13 4.02
430 431 1.593196 TTATGCAGCGGCCTATTCAC 58.407 50.000 6.32 0.00 40.13 3.18
431 432 2.566833 ATTATGCAGCGGCCTATTCA 57.433 45.000 6.32 0.00 40.13 2.57
432 433 3.568538 CAAATTATGCAGCGGCCTATTC 58.431 45.455 6.32 0.00 40.13 1.75
433 434 3.648339 CAAATTATGCAGCGGCCTATT 57.352 42.857 6.32 0.44 40.13 1.73
444 445 7.793398 TACCTCTCAGTGGTTGCAAATTATGC 61.793 42.308 3.13 5.87 45.60 3.14
445 446 4.460382 ACCTCTCAGTGGTTGCAAATTATG 59.540 41.667 0.00 0.00 33.34 1.90
446 447 4.666512 ACCTCTCAGTGGTTGCAAATTAT 58.333 39.130 0.00 0.00 33.34 1.28
447 448 4.098914 ACCTCTCAGTGGTTGCAAATTA 57.901 40.909 0.00 0.00 33.34 1.40
448 449 2.949447 ACCTCTCAGTGGTTGCAAATT 58.051 42.857 0.00 0.00 33.34 1.82
449 450 2.664402 ACCTCTCAGTGGTTGCAAAT 57.336 45.000 0.00 0.00 33.34 2.32
450 451 3.569194 TTACCTCTCAGTGGTTGCAAA 57.431 42.857 3.13 0.00 38.88 3.68
451 452 3.788227 ATTACCTCTCAGTGGTTGCAA 57.212 42.857 3.13 0.00 38.88 4.08
452 453 3.181445 ACAATTACCTCTCAGTGGTTGCA 60.181 43.478 3.13 0.00 38.88 4.08
453 454 3.189287 CACAATTACCTCTCAGTGGTTGC 59.811 47.826 3.13 0.00 38.88 4.17
454 455 4.641396 TCACAATTACCTCTCAGTGGTTG 58.359 43.478 3.13 0.00 38.88 3.77
455 456 4.804261 GCTCACAATTACCTCTCAGTGGTT 60.804 45.833 3.13 0.00 38.88 3.67
456 457 3.307059 GCTCACAATTACCTCTCAGTGGT 60.307 47.826 3.38 3.38 41.28 4.16
457 458 3.265791 GCTCACAATTACCTCTCAGTGG 58.734 50.000 0.00 0.00 0.00 4.00
458 459 3.930336 TGCTCACAATTACCTCTCAGTG 58.070 45.455 0.00 0.00 0.00 3.66
459 460 3.055530 CCTGCTCACAATTACCTCTCAGT 60.056 47.826 0.00 0.00 0.00 3.41
460 461 3.196469 TCCTGCTCACAATTACCTCTCAG 59.804 47.826 0.00 0.00 0.00 3.35
461 462 3.173151 TCCTGCTCACAATTACCTCTCA 58.827 45.455 0.00 0.00 0.00 3.27
462 463 3.895232 TCCTGCTCACAATTACCTCTC 57.105 47.619 0.00 0.00 0.00 3.20
463 464 3.776969 TGATCCTGCTCACAATTACCTCT 59.223 43.478 0.00 0.00 0.00 3.69
464 465 4.142609 TGATCCTGCTCACAATTACCTC 57.857 45.455 0.00 0.00 0.00 3.85
465 466 4.574674 TTGATCCTGCTCACAATTACCT 57.425 40.909 0.00 0.00 0.00 3.08
466 467 5.504665 CGATTTGATCCTGCTCACAATTACC 60.505 44.000 0.00 0.00 0.00 2.85
467 468 5.504665 CCGATTTGATCCTGCTCACAATTAC 60.505 44.000 0.00 0.00 0.00 1.89
468 469 4.576053 CCGATTTGATCCTGCTCACAATTA 59.424 41.667 0.00 0.00 0.00 1.40
469 470 3.379372 CCGATTTGATCCTGCTCACAATT 59.621 43.478 0.00 0.00 0.00 2.32
470 471 2.947652 CCGATTTGATCCTGCTCACAAT 59.052 45.455 0.00 0.00 0.00 2.71
471 472 2.358957 CCGATTTGATCCTGCTCACAA 58.641 47.619 0.00 0.00 0.00 3.33
472 473 1.407299 CCCGATTTGATCCTGCTCACA 60.407 52.381 0.00 0.00 0.00 3.58
473 474 1.303309 CCCGATTTGATCCTGCTCAC 58.697 55.000 0.00 0.00 0.00 3.51
474 475 0.464373 GCCCGATTTGATCCTGCTCA 60.464 55.000 0.00 0.00 0.00 4.26
475 476 0.464373 TGCCCGATTTGATCCTGCTC 60.464 55.000 0.00 0.00 0.00 4.26
476 477 0.749454 GTGCCCGATTTGATCCTGCT 60.749 55.000 0.00 0.00 0.00 4.24
477 478 0.749454 AGTGCCCGATTTGATCCTGC 60.749 55.000 0.00 0.00 0.00 4.85
478 479 1.019673 CAGTGCCCGATTTGATCCTG 58.980 55.000 0.00 0.00 0.00 3.86
479 480 0.911769 TCAGTGCCCGATTTGATCCT 59.088 50.000 0.00 0.00 0.00 3.24
480 481 1.017387 GTCAGTGCCCGATTTGATCC 58.983 55.000 0.00 0.00 0.00 3.36
481 482 1.017387 GGTCAGTGCCCGATTTGATC 58.983 55.000 0.00 0.00 0.00 2.92
482 483 0.327924 TGGTCAGTGCCCGATTTGAT 59.672 50.000 1.78 0.00 0.00 2.57
483 484 0.327924 ATGGTCAGTGCCCGATTTGA 59.672 50.000 1.78 0.00 0.00 2.69
484 485 1.176527 AATGGTCAGTGCCCGATTTG 58.823 50.000 1.78 0.00 0.00 2.32
485 486 1.818674 GAAATGGTCAGTGCCCGATTT 59.181 47.619 1.79 1.79 0.00 2.17
486 487 1.463674 GAAATGGTCAGTGCCCGATT 58.536 50.000 1.78 0.00 0.00 3.34
487 488 0.394352 GGAAATGGTCAGTGCCCGAT 60.394 55.000 1.78 0.00 0.00 4.18
488 489 1.002624 GGAAATGGTCAGTGCCCGA 60.003 57.895 1.78 0.00 0.00 5.14
489 490 2.398554 CGGAAATGGTCAGTGCCCG 61.399 63.158 0.00 0.00 0.00 6.13
490 491 0.035820 TACGGAAATGGTCAGTGCCC 60.036 55.000 1.78 0.00 35.26 5.36
491 492 1.670811 CATACGGAAATGGTCAGTGCC 59.329 52.381 0.00 0.00 35.26 5.01
492 493 1.064060 GCATACGGAAATGGTCAGTGC 59.936 52.381 0.00 0.00 35.26 4.40
493 494 1.670811 GGCATACGGAAATGGTCAGTG 59.329 52.381 0.00 0.00 35.26 3.66
494 495 1.408266 GGGCATACGGAAATGGTCAGT 60.408 52.381 0.00 0.00 38.33 3.41
495 496 1.308998 GGGCATACGGAAATGGTCAG 58.691 55.000 0.00 0.00 0.00 3.51
496 497 0.462937 CGGGCATACGGAAATGGTCA 60.463 55.000 0.00 0.00 0.00 4.02
497 498 0.463116 ACGGGCATACGGAAATGGTC 60.463 55.000 0.00 0.00 38.39 4.02
498 499 0.034863 AACGGGCATACGGAAATGGT 60.035 50.000 0.00 0.00 38.39 3.55
499 500 1.099689 AAACGGGCATACGGAAATGG 58.900 50.000 0.00 0.00 38.39 3.16
500 501 3.199677 TCTAAACGGGCATACGGAAATG 58.800 45.455 0.00 0.00 38.39 2.32
501 502 3.547054 TCTAAACGGGCATACGGAAAT 57.453 42.857 0.00 0.00 38.39 2.17
502 503 3.002102 GTTCTAAACGGGCATACGGAAA 58.998 45.455 0.00 0.00 38.39 3.13
503 504 2.620242 GTTCTAAACGGGCATACGGAA 58.380 47.619 0.00 0.00 38.39 4.30
504 505 1.134729 GGTTCTAAACGGGCATACGGA 60.135 52.381 0.00 0.00 38.39 4.69
505 506 1.292992 GGTTCTAAACGGGCATACGG 58.707 55.000 0.00 0.00 38.39 4.02
506 507 1.292992 GGGTTCTAAACGGGCATACG 58.707 55.000 0.00 0.00 40.31 3.06
507 508 1.134729 TCGGGTTCTAAACGGGCATAC 60.135 52.381 0.00 0.00 0.00 2.39
508 509 1.193323 TCGGGTTCTAAACGGGCATA 58.807 50.000 0.00 0.00 0.00 3.14
509 510 0.325602 TTCGGGTTCTAAACGGGCAT 59.674 50.000 0.00 0.00 0.00 4.40
510 511 0.325602 ATTCGGGTTCTAAACGGGCA 59.674 50.000 0.00 0.00 0.00 5.36
511 512 1.012086 GATTCGGGTTCTAAACGGGC 58.988 55.000 0.00 0.00 0.00 6.13
512 513 1.065998 TGGATTCGGGTTCTAAACGGG 60.066 52.381 0.00 0.00 0.00 5.28
513 514 2.277084 CTGGATTCGGGTTCTAAACGG 58.723 52.381 0.00 0.00 0.00 4.44
514 515 1.664151 GCTGGATTCGGGTTCTAAACG 59.336 52.381 0.00 0.00 0.00 3.60
515 516 2.678336 CAGCTGGATTCGGGTTCTAAAC 59.322 50.000 5.57 0.00 0.00 2.01
516 517 2.569853 TCAGCTGGATTCGGGTTCTAAA 59.430 45.455 15.13 0.00 0.00 1.85
517 518 2.168521 CTCAGCTGGATTCGGGTTCTAA 59.831 50.000 15.13 0.00 0.00 2.10
518 519 1.757118 CTCAGCTGGATTCGGGTTCTA 59.243 52.381 15.13 0.00 0.00 2.10
519 520 0.539051 CTCAGCTGGATTCGGGTTCT 59.461 55.000 15.13 0.00 0.00 3.01
520 521 0.462759 CCTCAGCTGGATTCGGGTTC 60.463 60.000 15.13 0.00 0.00 3.62
521 522 0.909610 TCCTCAGCTGGATTCGGGTT 60.910 55.000 15.13 0.00 0.00 4.11
522 523 0.909610 TTCCTCAGCTGGATTCGGGT 60.910 55.000 15.13 0.00 35.83 5.28
523 524 0.253044 TTTCCTCAGCTGGATTCGGG 59.747 55.000 15.13 7.09 35.83 5.14
524 525 1.945394 CATTTCCTCAGCTGGATTCGG 59.055 52.381 15.13 7.18 35.83 4.30
525 526 1.945394 CCATTTCCTCAGCTGGATTCG 59.055 52.381 15.13 0.00 35.83 3.34
526 527 2.305009 CCCATTTCCTCAGCTGGATTC 58.695 52.381 15.13 0.00 35.83 2.52
527 528 1.687368 GCCCATTTCCTCAGCTGGATT 60.687 52.381 15.13 0.00 35.83 3.01
528 529 0.106318 GCCCATTTCCTCAGCTGGAT 60.106 55.000 15.13 0.00 35.83 3.41
529 530 1.304282 GCCCATTTCCTCAGCTGGA 59.696 57.895 15.13 0.18 0.00 3.86
530 531 1.755783 GGCCCATTTCCTCAGCTGG 60.756 63.158 15.13 4.45 0.00 4.85
531 532 1.000521 TGGCCCATTTCCTCAGCTG 60.001 57.895 7.63 7.63 0.00 4.24
532 533 1.210204 TCTGGCCCATTTCCTCAGCT 61.210 55.000 0.00 0.00 0.00 4.24
533 534 0.323725 TTCTGGCCCATTTCCTCAGC 60.324 55.000 0.00 0.00 0.00 4.26
534 535 1.272092 TGTTCTGGCCCATTTCCTCAG 60.272 52.381 0.00 0.00 0.00 3.35
535 536 0.776810 TGTTCTGGCCCATTTCCTCA 59.223 50.000 0.00 0.00 0.00 3.86
536 537 2.149973 ATGTTCTGGCCCATTTCCTC 57.850 50.000 0.00 0.00 0.00 3.71
537 538 3.365472 GTTATGTTCTGGCCCATTTCCT 58.635 45.455 0.00 0.00 0.00 3.36
538 539 2.430694 GGTTATGTTCTGGCCCATTTCC 59.569 50.000 0.00 0.00 0.00 3.13
539 540 2.430694 GGGTTATGTTCTGGCCCATTTC 59.569 50.000 0.00 0.00 39.13 2.17
540 541 2.466846 GGGTTATGTTCTGGCCCATTT 58.533 47.619 0.00 0.00 39.13 2.32
541 542 1.684869 CGGGTTATGTTCTGGCCCATT 60.685 52.381 0.00 0.00 39.27 3.16
542 543 0.106719 CGGGTTATGTTCTGGCCCAT 60.107 55.000 0.00 0.00 39.27 4.00
543 544 1.301623 CGGGTTATGTTCTGGCCCA 59.698 57.895 0.00 0.00 39.27 5.36
544 545 1.453197 CCGGGTTATGTTCTGGCCC 60.453 63.158 0.00 0.00 36.08 5.80
545 546 0.034863 TTCCGGGTTATGTTCTGGCC 60.035 55.000 0.00 0.00 0.00 5.36
546 547 1.379527 CTTCCGGGTTATGTTCTGGC 58.620 55.000 0.00 0.00 0.00 4.85
547 548 1.408266 CCCTTCCGGGTTATGTTCTGG 60.408 57.143 0.00 0.00 46.12 3.86
548 549 2.038387 CCCTTCCGGGTTATGTTCTG 57.962 55.000 0.00 0.00 46.12 3.02
559 560 1.675641 CCAGCTGTTTCCCTTCCGG 60.676 63.158 13.81 0.00 0.00 5.14
560 561 2.335712 GCCAGCTGTTTCCCTTCCG 61.336 63.158 13.81 0.00 0.00 4.30
561 562 1.979155 GGCCAGCTGTTTCCCTTCC 60.979 63.158 13.81 0.00 0.00 3.46
562 563 2.335712 CGGCCAGCTGTTTCCCTTC 61.336 63.158 13.81 0.00 0.00 3.46
563 564 2.282462 CGGCCAGCTGTTTCCCTT 60.282 61.111 13.81 0.00 0.00 3.95
574 575 0.037975 AGCTCAAATTTTGCGGCCAG 60.038 50.000 2.24 0.00 32.44 4.85
575 576 0.038343 GAGCTCAAATTTTGCGGCCA 60.038 50.000 9.40 0.00 32.44 5.36
576 577 0.038343 TGAGCTCAAATTTTGCGGCC 60.038 50.000 15.67 0.00 32.44 6.13
577 578 2.000429 ATGAGCTCAAATTTTGCGGC 58.000 45.000 22.50 14.59 0.00 6.53
578 579 4.737054 AGTAATGAGCTCAAATTTTGCGG 58.263 39.130 22.50 1.70 0.00 5.69
579 580 7.485913 ACATTAGTAATGAGCTCAAATTTTGCG 59.514 33.333 26.08 9.49 41.46 4.85
580 581 8.693542 ACATTAGTAATGAGCTCAAATTTTGC 57.306 30.769 26.08 13.74 41.46 3.68
585 586 9.499479 CCTGATACATTAGTAATGAGCTCAAAT 57.501 33.333 26.08 15.23 41.46 2.32
586 587 7.442364 GCCTGATACATTAGTAATGAGCTCAAA 59.558 37.037 26.08 10.55 41.46 2.69
587 588 6.931281 GCCTGATACATTAGTAATGAGCTCAA 59.069 38.462 26.08 1.31 41.46 3.02
588 589 6.268617 AGCCTGATACATTAGTAATGAGCTCA 59.731 38.462 26.08 20.79 41.46 4.26
589 590 6.696411 AGCCTGATACATTAGTAATGAGCTC 58.304 40.000 26.08 18.31 41.46 4.09
590 591 6.678568 AGCCTGATACATTAGTAATGAGCT 57.321 37.500 26.08 18.80 41.46 4.09
591 592 9.442047 AATAAGCCTGATACATTAGTAATGAGC 57.558 33.333 26.08 17.33 41.46 4.26
630 631 9.803315 TGTACATTTTAAACACACATAAAGCAA 57.197 25.926 0.00 0.00 0.00 3.91
631 632 9.239002 GTGTACATTTTAAACACACATAAAGCA 57.761 29.630 0.00 0.00 42.40 3.91
632 633 9.458374 AGTGTACATTTTAAACACACATAAAGC 57.542 29.630 17.19 0.00 44.68 3.51
696 697 9.398538 AGCCAACCGAATATGTAAATACTTAAA 57.601 29.630 0.00 0.00 0.00 1.52
697 698 8.967664 AGCCAACCGAATATGTAAATACTTAA 57.032 30.769 0.00 0.00 0.00 1.85
698 699 8.967664 AAGCCAACCGAATATGTAAATACTTA 57.032 30.769 0.00 0.00 0.00 2.24
699 700 7.875327 AAGCCAACCGAATATGTAAATACTT 57.125 32.000 0.00 0.00 0.00 2.24
700 701 7.554835 TCAAAGCCAACCGAATATGTAAATACT 59.445 33.333 0.00 0.00 0.00 2.12
724 725 3.436325 CCCTGCTCTATCTCTCCTTCTCA 60.436 52.174 0.00 0.00 0.00 3.27
725 726 3.157087 CCCTGCTCTATCTCTCCTTCTC 58.843 54.545 0.00 0.00 0.00 2.87
726 727 2.517980 ACCCTGCTCTATCTCTCCTTCT 59.482 50.000 0.00 0.00 0.00 2.85
727 728 2.957474 ACCCTGCTCTATCTCTCCTTC 58.043 52.381 0.00 0.00 0.00 3.46
728 729 4.544564 TTACCCTGCTCTATCTCTCCTT 57.455 45.455 0.00 0.00 0.00 3.36
737 743 4.284490 CCAGCTCATAATTACCCTGCTCTA 59.716 45.833 0.00 0.00 0.00 2.43
787 793 2.670210 CCAAACGGGTACGCCGAAC 61.670 63.158 23.94 0.00 46.04 3.95
794 800 0.250252 TTCGGGTTCCAAACGGGTAC 60.250 55.000 0.00 0.00 38.11 3.34
839 849 1.301401 CGCTTCACTTCCGGGTTCA 60.301 57.895 0.00 0.00 0.00 3.18
851 862 4.704833 GCCAGCTGTCCCGCTTCA 62.705 66.667 13.81 0.00 38.41 3.02
1118 1165 3.459063 GGTAGGGGAGCGCTTCGT 61.459 66.667 13.26 11.62 0.00 3.85
1329 1376 1.289800 CGGATCCAGATGCAGATGCG 61.290 60.000 13.41 11.94 45.56 4.73
1333 1380 0.465705 GAACCGGATCCAGATGCAGA 59.534 55.000 9.46 0.00 0.00 4.26
1337 1384 1.759445 ACTCTGAACCGGATCCAGATG 59.241 52.381 9.46 12.72 36.48 2.90
1401 4930 5.701290 GCCTATCTACTGCGGTAATTCAATT 59.299 40.000 6.88 0.00 0.00 2.32
1410 4939 1.043116 TGCTGCCTATCTACTGCGGT 61.043 55.000 2.42 2.42 33.88 5.68
1438 4968 9.062524 CAGTACTGTATTAATCTAGAGCTCAGT 57.937 37.037 17.77 8.88 37.40 3.41
1466 4996 8.838365 TGGACACGTAAATTTTGTTTATGTACT 58.162 29.630 0.00 0.00 33.69 2.73
1467 4997 8.894864 GTGGACACGTAAATTTTGTTTATGTAC 58.105 33.333 0.00 0.00 33.69 2.90
1468 4998 8.838365 AGTGGACACGTAAATTTTGTTTATGTA 58.162 29.630 0.00 0.00 33.69 2.29
1469 4999 7.708998 AGTGGACACGTAAATTTTGTTTATGT 58.291 30.769 0.00 0.81 35.24 2.29
1470 5000 9.109533 GTAGTGGACACGTAAATTTTGTTTATG 57.890 33.333 0.00 0.00 36.20 1.90
1471 5001 9.059260 AGTAGTGGACACGTAAATTTTGTTTAT 57.941 29.630 0.00 0.00 36.20 1.40
1472 5002 8.436046 AGTAGTGGACACGTAAATTTTGTTTA 57.564 30.769 0.00 0.00 36.20 2.01
1504 5034 8.956533 ACAACTTATATTTTGTTTGGCAACTT 57.043 26.923 0.00 0.00 36.72 2.66
1505 5035 7.655732 GGACAACTTATATTTTGTTTGGCAACT 59.344 33.333 0.00 0.00 36.06 3.16
1506 5036 7.655732 AGGACAACTTATATTTTGTTTGGCAAC 59.344 33.333 0.00 0.00 36.06 4.17
1507 5037 7.655328 CAGGACAACTTATATTTTGTTTGGCAA 59.345 33.333 0.00 0.00 36.06 4.52
1508 5038 7.014711 TCAGGACAACTTATATTTTGTTTGGCA 59.985 33.333 2.02 0.00 36.06 4.92
1509 5039 7.375053 TCAGGACAACTTATATTTTGTTTGGC 58.625 34.615 2.02 0.00 36.06 4.52
1510 5040 9.357652 CATCAGGACAACTTATATTTTGTTTGG 57.642 33.333 2.02 0.00 36.06 3.28
1511 5041 9.357652 CCATCAGGACAACTTATATTTTGTTTG 57.642 33.333 2.02 4.54 36.06 2.93
1512 5042 8.531146 CCCATCAGGACAACTTATATTTTGTTT 58.469 33.333 2.02 0.00 36.06 2.83
1513 5043 7.893302 TCCCATCAGGACAACTTATATTTTGTT 59.107 33.333 2.02 0.00 40.93 2.83
1514 5044 7.410174 TCCCATCAGGACAACTTATATTTTGT 58.590 34.615 0.25 0.25 40.93 2.83
1515 5045 7.880160 TCCCATCAGGACAACTTATATTTTG 57.120 36.000 0.00 0.00 40.93 2.44
1543 5073 6.859112 AACACTACACTACATCCTCATTCT 57.141 37.500 0.00 0.00 0.00 2.40
1549 5079 6.014584 TCACATGAAACACTACACTACATCCT 60.015 38.462 0.00 0.00 0.00 3.24
1627 5157 4.060205 GACAGCAATTTCAGCAAAACCAT 58.940 39.130 0.00 0.00 0.00 3.55
1878 5408 1.490574 CTGGTCCTCCCTCCAGTTAG 58.509 60.000 3.38 0.00 44.19 2.34
2249 5783 7.621428 ACTAATCATTCTGATGGTCAGTTTG 57.379 36.000 6.83 6.30 44.58 2.93
2361 5895 5.337578 AGAAAGGTGCTTGCAAAAAGTTA 57.662 34.783 0.00 0.00 0.00 2.24
2366 5900 4.727507 TGTAAGAAAGGTGCTTGCAAAA 57.272 36.364 0.00 0.00 35.52 2.44
2373 5907 3.754965 TCATGCTTGTAAGAAAGGTGCT 58.245 40.909 0.00 0.00 0.00 4.40
2386 5920 5.702670 TCAGAAACTAGAAACCTCATGCTTG 59.297 40.000 0.00 0.00 0.00 4.01
2401 5935 5.479375 AGTGTTACTCGGGATTCAGAAACTA 59.521 40.000 0.00 0.00 0.00 2.24
2408 5942 4.529377 ACCTTAAGTGTTACTCGGGATTCA 59.471 41.667 0.97 0.00 0.00 2.57
2409 5943 4.868734 CACCTTAAGTGTTACTCGGGATTC 59.131 45.833 0.97 0.00 41.93 2.52
2410 5944 4.828829 CACCTTAAGTGTTACTCGGGATT 58.171 43.478 0.97 0.00 41.93 3.01
2412 5946 3.947910 CACCTTAAGTGTTACTCGGGA 57.052 47.619 0.97 0.00 41.93 5.14
2442 6022 5.106197 TGCATGACAGAATGGTTTGATACAC 60.106 40.000 0.00 0.00 43.62 2.90
2444 6024 5.565592 TGCATGACAGAATGGTTTGATAC 57.434 39.130 0.00 0.00 43.62 2.24
2446 6026 4.098960 GGATGCATGACAGAATGGTTTGAT 59.901 41.667 2.46 0.00 43.62 2.57
2452 6032 1.954382 CTGGGATGCATGACAGAATGG 59.046 52.381 17.99 0.00 43.62 3.16
2492 6073 4.377839 TCTATCGACAGCCAAGAAAGAG 57.622 45.455 0.00 0.00 0.00 2.85
2494 6075 4.437239 ACATCTATCGACAGCCAAGAAAG 58.563 43.478 0.00 0.00 0.00 2.62
2500 6081 2.959030 AGCTAACATCTATCGACAGCCA 59.041 45.455 0.00 0.00 0.00 4.75
2501 6082 3.651803 AGCTAACATCTATCGACAGCC 57.348 47.619 0.00 0.00 0.00 4.85
2521 6102 9.555727 GGAGACTAATGCACCACTTAAATATTA 57.444 33.333 0.00 0.00 0.00 0.98
2522 6103 8.052748 TGGAGACTAATGCACCACTTAAATATT 58.947 33.333 0.00 0.00 0.00 1.28
2523 6104 7.573710 TGGAGACTAATGCACCACTTAAATAT 58.426 34.615 0.00 0.00 0.00 1.28
2524 6105 6.953101 TGGAGACTAATGCACCACTTAAATA 58.047 36.000 0.00 0.00 0.00 1.40
2525 6106 5.815581 TGGAGACTAATGCACCACTTAAAT 58.184 37.500 0.00 0.00 0.00 1.40
2526 6107 5.235850 TGGAGACTAATGCACCACTTAAA 57.764 39.130 0.00 0.00 0.00 1.52
2527 6108 4.901197 TGGAGACTAATGCACCACTTAA 57.099 40.909 0.00 0.00 0.00 1.85
2528 6109 5.453339 GCTATGGAGACTAATGCACCACTTA 60.453 44.000 0.00 0.00 33.38 2.24
2529 6110 4.684485 GCTATGGAGACTAATGCACCACTT 60.684 45.833 0.00 0.00 33.38 3.16
2530 6111 3.181461 GCTATGGAGACTAATGCACCACT 60.181 47.826 0.00 0.00 33.38 4.00
2531 6112 3.134458 GCTATGGAGACTAATGCACCAC 58.866 50.000 0.00 0.00 33.38 4.16
2532 6113 3.041211 AGCTATGGAGACTAATGCACCA 58.959 45.455 0.00 0.00 35.09 4.17
2533 6114 3.070159 TGAGCTATGGAGACTAATGCACC 59.930 47.826 0.00 0.00 0.00 5.01
2534 6115 4.305769 CTGAGCTATGGAGACTAATGCAC 58.694 47.826 0.00 0.00 0.00 4.57
2535 6116 3.323115 CCTGAGCTATGGAGACTAATGCA 59.677 47.826 0.00 0.00 0.00 3.96
2536 6117 3.576118 TCCTGAGCTATGGAGACTAATGC 59.424 47.826 3.29 0.00 0.00 3.56
2552 6133 5.344743 TGGATAAACACTTAGCTCCTGAG 57.655 43.478 0.00 0.00 0.00 3.35
2553 6134 5.451937 CGATGGATAAACACTTAGCTCCTGA 60.452 44.000 0.00 0.00 0.00 3.86
2554 6135 4.747108 CGATGGATAAACACTTAGCTCCTG 59.253 45.833 0.00 0.00 0.00 3.86
2555 6136 4.649674 TCGATGGATAAACACTTAGCTCCT 59.350 41.667 0.00 0.00 0.00 3.69
2556 6137 4.945246 TCGATGGATAAACACTTAGCTCC 58.055 43.478 0.00 0.00 0.00 4.70
2557 6138 6.903883 TTTCGATGGATAAACACTTAGCTC 57.096 37.500 0.00 0.00 0.00 4.09
2558 6139 6.483640 GGATTTCGATGGATAAACACTTAGCT 59.516 38.462 0.00 0.00 0.00 3.32
2559 6140 6.260050 TGGATTTCGATGGATAAACACTTAGC 59.740 38.462 0.00 0.00 0.00 3.09
2560 6141 7.254795 GGTGGATTTCGATGGATAAACACTTAG 60.255 40.741 0.00 0.00 0.00 2.18
2561 6142 6.540914 GGTGGATTTCGATGGATAAACACTTA 59.459 38.462 0.00 0.00 0.00 2.24
2562 6143 5.357032 GGTGGATTTCGATGGATAAACACTT 59.643 40.000 0.00 0.00 0.00 3.16
2563 6144 4.881850 GGTGGATTTCGATGGATAAACACT 59.118 41.667 0.00 0.00 0.00 3.55
2564 6145 4.260620 CGGTGGATTTCGATGGATAAACAC 60.261 45.833 0.00 0.00 0.00 3.32
2565 6146 3.874543 CGGTGGATTTCGATGGATAAACA 59.125 43.478 0.00 0.00 0.00 2.83
2566 6147 3.875134 ACGGTGGATTTCGATGGATAAAC 59.125 43.478 0.00 0.00 0.00 2.01
2572 6153 2.607635 CACTTACGGTGGATTTCGATGG 59.392 50.000 0.00 0.00 41.90 3.51
2594 6175 2.331194 CCTTTGAAATTTGAGGCGCAG 58.669 47.619 10.83 0.00 0.00 5.18
2596 6177 1.713597 CCCTTTGAAATTTGAGGCGC 58.286 50.000 0.00 0.00 0.00 6.53
2597 6178 1.273327 AGCCCTTTGAAATTTGAGGCG 59.727 47.619 0.00 0.00 43.72 5.52
2599 6180 2.027837 CCCAGCCCTTTGAAATTTGAGG 60.028 50.000 0.00 0.10 0.00 3.86
2604 6185 4.019411 CCAATAACCCAGCCCTTTGAAATT 60.019 41.667 0.00 0.00 0.00 1.82
2625 6206 8.603898 TGAATTGAGTAAGTAGAAGATACCCA 57.396 34.615 0.00 0.00 0.00 4.51
2663 6334 5.221130 GTCGACTGCTTTACTGAGTTTACT 58.779 41.667 8.70 0.00 0.00 2.24
2671 6342 3.673809 GGTAAGTGTCGACTGCTTTACTG 59.326 47.826 23.43 0.00 30.61 2.74
2672 6343 3.573110 AGGTAAGTGTCGACTGCTTTACT 59.427 43.478 23.43 19.24 30.61 2.24
2676 6369 4.595762 TTAAGGTAAGTGTCGACTGCTT 57.404 40.909 22.43 22.43 30.61 3.91
2679 6372 5.287226 ACTGTTTAAGGTAAGTGTCGACTG 58.713 41.667 17.92 0.00 30.61 3.51
2711 6404 2.935849 CAACACCGCATGCAAGTAGATA 59.064 45.455 19.57 0.00 0.00 1.98
2712 6405 1.739466 CAACACCGCATGCAAGTAGAT 59.261 47.619 19.57 0.95 0.00 1.98
2732 6425 6.621596 GCACTTGTACAGAAATGAGATGGAAC 60.622 42.308 0.00 0.00 0.00 3.62
2733 6426 5.412594 GCACTTGTACAGAAATGAGATGGAA 59.587 40.000 0.00 0.00 0.00 3.53
2761 6454 8.493547 CACTACAATATCAACATATGTGCTCTG 58.506 37.037 9.63 3.95 0.00 3.35
2762 6455 8.424133 TCACTACAATATCAACATATGTGCTCT 58.576 33.333 9.63 0.00 0.00 4.09
2789 6482 9.658799 CAAGAACCTGTGAAAGAAGAGAATATA 57.341 33.333 0.00 0.00 0.00 0.86
2826 6627 5.487488 TCCCCACAACAGTAGTATTCTTCAT 59.513 40.000 0.00 0.00 0.00 2.57
2868 6669 7.558161 TGTGGCTTGTCTGAATGAAATATAG 57.442 36.000 0.00 0.00 0.00 1.31
2889 6690 5.068067 TCAATGGAACTAATGGCATCATGTG 59.932 40.000 0.00 1.45 33.18 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.