Multiple sequence alignment - TraesCS2D01G120800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G120800 chr2D 100.000 3090 0 0 1 3090 70375575 70378664 0.000000e+00 5707
1 TraesCS2D01G120800 chr2D 80.068 1179 184 37 944 2086 70464153 70465316 0.000000e+00 828
2 TraesCS2D01G120800 chr2D 79.746 1180 192 33 944 2086 70511530 70512699 0.000000e+00 811
3 TraesCS2D01G120800 chr2D 78.880 1179 204 30 944 2086 70383263 70384432 0.000000e+00 756
4 TraesCS2D01G120800 chr2D 79.671 851 152 14 1255 2086 69962211 69961363 7.380000e-166 593
5 TraesCS2D01G120800 chr2D 80.714 700 127 5 1392 2086 70460539 70461235 3.510000e-149 538
6 TraesCS2D01G120800 chr2D 88.967 426 45 1 1 424 204488741 204489166 2.730000e-145 525
7 TraesCS2D01G120800 chr2D 87.264 424 50 3 1 421 528421658 528422080 5.990000e-132 481
8 TraesCS2D01G120800 chr2D 80.206 389 71 5 1521 1909 81152422 81152040 1.400000e-73 287
9 TraesCS2D01G120800 chr2D 82.746 284 37 8 944 1225 69962885 69962612 3.080000e-60 243
10 TraesCS2D01G120800 chr2B 93.596 1421 65 11 735 2133 106163036 106161620 0.000000e+00 2097
11 TraesCS2D01G120800 chr2B 91.911 853 30 13 2142 2965 106161565 106160723 0.000000e+00 1157
12 TraesCS2D01G120800 chr2B 79.611 1182 197 29 941 2086 106619489 106620662 0.000000e+00 808
13 TraesCS2D01G120800 chr2B 79.625 1173 192 36 944 2086 106149330 106148175 0.000000e+00 798
14 TraesCS2D01G120800 chr2B 79.419 1171 201 31 944 2086 106469195 106470353 0.000000e+00 791
15 TraesCS2D01G120800 chr2B 79.705 1153 187 32 964 2086 106717838 106718973 0.000000e+00 789
16 TraesCS2D01G120800 chr2B 79.184 1177 201 30 944 2086 106153724 106152558 0.000000e+00 776
17 TraesCS2D01G120800 chr2B 80.593 675 119 8 1415 2086 106159190 106158525 7.640000e-141 510
18 TraesCS2D01G120800 chr2B 78.382 754 134 21 1255 1985 106429343 106430090 2.170000e-126 462
19 TraesCS2D01G120800 chr2B 80.357 392 65 9 1521 1909 132830455 132830073 1.400000e-73 287
20 TraesCS2D01G120800 chr2B 83.959 293 38 8 936 1225 106079300 106079014 3.930000e-69 272
21 TraesCS2D01G120800 chr2B 89.941 169 10 6 456 621 106164838 106164674 8.680000e-51 211
22 TraesCS2D01G120800 chr2B 94.667 75 4 0 646 720 106163092 106163018 1.950000e-22 117
23 TraesCS2D01G120800 chrUn 91.183 431 32 3 1 428 91138444 91138017 5.740000e-162 580
24 TraesCS2D01G120800 chr2A 91.469 422 30 2 1 420 151263140 151262723 2.670000e-160 575
25 TraesCS2D01G120800 chr5D 89.302 430 44 1 1 428 545219267 545219696 3.510000e-149 538
26 TraesCS2D01G120800 chr1A 88.710 434 34 10 1 422 339917201 339917631 1.640000e-142 516
27 TraesCS2D01G120800 chr1A 87.850 428 46 5 3 426 516145610 516145185 5.950000e-137 497
28 TraesCS2D01G120800 chr7A 87.793 426 46 5 3 424 551093860 551094283 7.700000e-136 494
29 TraesCS2D01G120800 chr3D 86.168 441 54 3 1 435 45908129 45907690 1.300000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G120800 chr2D 70375575 70378664 3089 False 5707.0 5707 100.0000 1 3090 1 chr2D.!!$F1 3089
1 TraesCS2D01G120800 chr2D 70511530 70512699 1169 False 811.0 811 79.7460 944 2086 1 chr2D.!!$F3 1142
2 TraesCS2D01G120800 chr2D 70383263 70384432 1169 False 756.0 756 78.8800 944 2086 1 chr2D.!!$F2 1142
3 TraesCS2D01G120800 chr2D 70460539 70465316 4777 False 683.0 828 80.3910 944 2086 2 chr2D.!!$F6 1142
4 TraesCS2D01G120800 chr2D 69961363 69962885 1522 True 418.0 593 81.2085 944 2086 2 chr2D.!!$R2 1142
5 TraesCS2D01G120800 chr2B 106158525 106164838 6313 True 818.4 2097 90.1416 456 2965 5 chr2B.!!$R4 2509
6 TraesCS2D01G120800 chr2B 106619489 106620662 1173 False 808.0 808 79.6110 941 2086 1 chr2B.!!$F3 1145
7 TraesCS2D01G120800 chr2B 106469195 106470353 1158 False 791.0 791 79.4190 944 2086 1 chr2B.!!$F2 1142
8 TraesCS2D01G120800 chr2B 106717838 106718973 1135 False 789.0 789 79.7050 964 2086 1 chr2B.!!$F4 1122
9 TraesCS2D01G120800 chr2B 106148175 106153724 5549 True 787.0 798 79.4045 944 2086 2 chr2B.!!$R3 1142
10 TraesCS2D01G120800 chr2B 106429343 106430090 747 False 462.0 462 78.3820 1255 1985 1 chr2B.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.03563 GCAACATGTCAGCTCTCCCT 60.036 55.0 14.11 0.0 0.0 4.20 F
1300 4367 0.03601 CGTGCAGGGAGAAGGTGATT 60.036 55.0 0.00 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 4533 0.035915 TGATGTTCCGGGCGATGAAA 60.036 50.0 0.00 0.0 0.0 2.69 R
2994 7263 0.034896 CTTCCCTTGCCACGTGTAGT 59.965 55.0 15.65 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.703416 GACACCATGATTGTCAGCTCA 58.297 47.619 17.80 0.00 42.58 4.26
21 22 3.076621 GACACCATGATTGTCAGCTCAA 58.923 45.455 17.80 0.00 42.58 3.02
23 24 4.084287 ACACCATGATTGTCAGCTCAAAT 58.916 39.130 0.00 0.00 0.00 2.32
24 25 4.157289 ACACCATGATTGTCAGCTCAAATC 59.843 41.667 0.00 5.85 0.00 2.17
25 26 4.398358 CACCATGATTGTCAGCTCAAATCT 59.602 41.667 11.74 0.00 0.00 2.40
26 27 4.639310 ACCATGATTGTCAGCTCAAATCTC 59.361 41.667 11.74 0.00 0.00 2.75
27 28 4.260661 CCATGATTGTCAGCTCAAATCTCG 60.261 45.833 11.74 5.20 0.00 4.04
28 29 3.930336 TGATTGTCAGCTCAAATCTCGT 58.070 40.909 11.74 0.00 0.00 4.18
29 30 4.318332 TGATTGTCAGCTCAAATCTCGTT 58.682 39.130 11.74 0.00 0.00 3.85
30 31 4.756642 TGATTGTCAGCTCAAATCTCGTTT 59.243 37.500 11.74 0.00 0.00 3.60
31 32 4.472691 TTGTCAGCTCAAATCTCGTTTG 57.527 40.909 0.00 0.00 46.86 2.93
32 33 2.224079 TGTCAGCTCAAATCTCGTTTGC 59.776 45.455 0.00 0.00 45.45 3.68
33 34 1.806542 TCAGCTCAAATCTCGTTTGCC 59.193 47.619 0.00 0.00 45.45 4.52
34 35 1.536766 CAGCTCAAATCTCGTTTGCCA 59.463 47.619 0.00 0.00 45.45 4.92
35 36 2.163010 CAGCTCAAATCTCGTTTGCCAT 59.837 45.455 0.00 0.00 45.45 4.40
37 38 2.095059 GCTCAAATCTCGTTTGCCATGT 60.095 45.455 0.00 0.00 45.45 3.21
40 41 3.758023 TCAAATCTCGTTTGCCATGTCAT 59.242 39.130 0.00 0.00 45.45 3.06
41 42 4.940654 TCAAATCTCGTTTGCCATGTCATA 59.059 37.500 0.00 0.00 45.45 2.15
42 43 5.414144 TCAAATCTCGTTTGCCATGTCATAA 59.586 36.000 0.00 0.00 45.45 1.90
44 45 4.880886 TCTCGTTTGCCATGTCATAATG 57.119 40.909 0.00 0.00 0.00 1.90
47 48 3.376859 TCGTTTGCCATGTCATAATGACC 59.623 43.478 0.00 0.00 46.40 4.02
48 49 3.489059 CGTTTGCCATGTCATAATGACCC 60.489 47.826 0.00 0.00 46.40 4.46
49 50 3.378861 TTGCCATGTCATAATGACCCA 57.621 42.857 0.00 0.00 46.40 4.51
50 51 3.378861 TGCCATGTCATAATGACCCAA 57.621 42.857 0.00 0.00 46.40 4.12
51 52 3.706183 TGCCATGTCATAATGACCCAAA 58.294 40.909 0.00 0.00 46.40 3.28
52 53 4.288398 TGCCATGTCATAATGACCCAAAT 58.712 39.130 0.00 0.00 46.40 2.32
53 54 5.453158 TGCCATGTCATAATGACCCAAATA 58.547 37.500 0.00 0.00 46.40 1.40
54 55 5.896106 TGCCATGTCATAATGACCCAAATAA 59.104 36.000 0.00 0.00 46.40 1.40
56 57 6.040842 GCCATGTCATAATGACCCAAATAACT 59.959 38.462 0.00 0.00 46.40 2.24
58 59 9.300681 CCATGTCATAATGACCCAAATAACTAT 57.699 33.333 0.00 0.00 46.40 2.12
63 64 9.944376 TCATAATGACCCAAATAACTATAGAGC 57.056 33.333 6.78 0.00 0.00 4.09
64 65 9.725019 CATAATGACCCAAATAACTATAGAGCA 57.275 33.333 6.78 0.00 0.00 4.26
66 67 8.451908 AATGACCCAAATAACTATAGAGCAAC 57.548 34.615 6.78 0.00 0.00 4.17
67 68 6.953101 TGACCCAAATAACTATAGAGCAACA 58.047 36.000 6.78 0.00 0.00 3.33
70 71 7.346471 ACCCAAATAACTATAGAGCAACATGT 58.654 34.615 6.78 0.00 0.00 3.21
72 73 7.498900 CCCAAATAACTATAGAGCAACATGTCA 59.501 37.037 6.78 0.00 0.00 3.58
74 75 7.721286 AATAACTATAGAGCAACATGTCAGC 57.279 36.000 6.78 13.66 0.00 4.26
75 76 5.350504 AACTATAGAGCAACATGTCAGCT 57.649 39.130 21.54 21.54 42.17 4.24
79 80 3.547567 AGCAACATGTCAGCTCTCC 57.452 52.632 17.28 0.00 32.05 3.71
81 82 0.035630 GCAACATGTCAGCTCTCCCT 60.036 55.000 14.11 0.00 0.00 4.20
83 84 1.554160 CAACATGTCAGCTCTCCCTCT 59.446 52.381 0.00 0.00 0.00 3.69
84 85 2.762887 CAACATGTCAGCTCTCCCTCTA 59.237 50.000 0.00 0.00 0.00 2.43
85 86 3.326946 ACATGTCAGCTCTCCCTCTAT 57.673 47.619 0.00 0.00 0.00 1.98
87 88 3.117169 ACATGTCAGCTCTCCCTCTATCT 60.117 47.826 0.00 0.00 0.00 1.98
89 90 2.511637 TGTCAGCTCTCCCTCTATCTCA 59.488 50.000 0.00 0.00 0.00 3.27
90 91 2.884639 GTCAGCTCTCCCTCTATCTCAC 59.115 54.545 0.00 0.00 0.00 3.51
91 92 2.782925 TCAGCTCTCCCTCTATCTCACT 59.217 50.000 0.00 0.00 0.00 3.41
92 93 3.977326 TCAGCTCTCCCTCTATCTCACTA 59.023 47.826 0.00 0.00 0.00 2.74
93 94 4.072131 CAGCTCTCCCTCTATCTCACTAC 58.928 52.174 0.00 0.00 0.00 2.73
94 95 3.719479 AGCTCTCCCTCTATCTCACTACA 59.281 47.826 0.00 0.00 0.00 2.74
95 96 4.167113 AGCTCTCCCTCTATCTCACTACAA 59.833 45.833 0.00 0.00 0.00 2.41
96 97 5.076873 GCTCTCCCTCTATCTCACTACAAT 58.923 45.833 0.00 0.00 0.00 2.71
98 99 6.717540 GCTCTCCCTCTATCTCACTACAATAA 59.282 42.308 0.00 0.00 0.00 1.40
100 101 8.698973 TCTCCCTCTATCTCACTACAATAAAG 57.301 38.462 0.00 0.00 0.00 1.85
101 102 8.282982 TCTCCCTCTATCTCACTACAATAAAGT 58.717 37.037 0.00 0.00 0.00 2.66
102 103 8.239038 TCCCTCTATCTCACTACAATAAAGTG 57.761 38.462 0.00 0.00 44.66 3.16
103 104 7.839705 TCCCTCTATCTCACTACAATAAAGTGT 59.160 37.037 3.40 0.00 43.88 3.55
104 105 7.923344 CCCTCTATCTCACTACAATAAAGTGTG 59.077 40.741 3.40 1.71 43.88 3.82
106 107 7.782049 TCTATCTCACTACAATAAAGTGTGGG 58.218 38.462 3.40 0.00 43.88 4.61
107 108 5.818678 TCTCACTACAATAAAGTGTGGGT 57.181 39.130 3.40 0.00 43.88 4.51
108 109 5.790593 TCTCACTACAATAAAGTGTGGGTC 58.209 41.667 3.40 0.00 43.88 4.46
109 110 4.901868 TCACTACAATAAAGTGTGGGTCC 58.098 43.478 3.40 0.00 43.88 4.46
110 111 4.348461 TCACTACAATAAAGTGTGGGTCCA 59.652 41.667 3.40 0.00 43.88 4.02
112 113 5.048991 CACTACAATAAAGTGTGGGTCCAAC 60.049 44.000 0.00 0.00 39.61 3.77
113 114 4.178956 ACAATAAAGTGTGGGTCCAACT 57.821 40.909 0.00 0.00 0.00 3.16
114 115 4.542697 ACAATAAAGTGTGGGTCCAACTT 58.457 39.130 0.00 9.92 35.70 2.66
116 117 2.818751 AAAGTGTGGGTCCAACTTGA 57.181 45.000 13.93 0.00 34.46 3.02
117 118 3.312736 AAAGTGTGGGTCCAACTTGAT 57.687 42.857 13.93 2.95 34.46 2.57
118 119 2.568623 AGTGTGGGTCCAACTTGATC 57.431 50.000 0.00 0.00 0.00 2.92
120 121 0.404040 TGTGGGTCCAACTTGATCCC 59.596 55.000 11.81 11.81 34.38 3.85
121 122 0.404040 GTGGGTCCAACTTGATCCCA 59.596 55.000 15.44 15.44 44.76 4.37
122 123 1.153539 TGGGTCCAACTTGATCCCAA 58.846 50.000 16.46 5.81 44.12 4.12
123 124 1.203001 TGGGTCCAACTTGATCCCAAC 60.203 52.381 16.46 0.00 44.12 3.77
124 125 1.203001 GGGTCCAACTTGATCCCAACA 60.203 52.381 13.12 0.00 38.15 3.33
125 126 2.593026 GGTCCAACTTGATCCCAACAA 58.407 47.619 0.00 0.00 0.00 2.83
127 128 2.031157 GTCCAACTTGATCCCAACAACG 60.031 50.000 0.00 0.00 0.00 4.10
128 129 1.953686 CCAACTTGATCCCAACAACGT 59.046 47.619 0.00 0.00 0.00 3.99
129 130 2.360801 CCAACTTGATCCCAACAACGTT 59.639 45.455 0.00 0.00 0.00 3.99
131 132 3.208747 ACTTGATCCCAACAACGTTCT 57.791 42.857 0.00 0.00 0.00 3.01
132 133 3.551846 ACTTGATCCCAACAACGTTCTT 58.448 40.909 0.00 0.00 0.00 2.52
133 134 4.710324 ACTTGATCCCAACAACGTTCTTA 58.290 39.130 0.00 0.00 0.00 2.10
134 135 5.313712 ACTTGATCCCAACAACGTTCTTAT 58.686 37.500 0.00 0.00 0.00 1.73
135 136 5.768164 ACTTGATCCCAACAACGTTCTTATT 59.232 36.000 0.00 0.00 0.00 1.40
136 137 6.264518 ACTTGATCCCAACAACGTTCTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
137 138 6.642707 TGATCCCAACAACGTTCTTATTTT 57.357 33.333 0.00 0.00 0.00 1.82
138 139 6.674066 TGATCCCAACAACGTTCTTATTTTC 58.326 36.000 0.00 0.00 0.00 2.29
139 140 6.488683 TGATCCCAACAACGTTCTTATTTTCT 59.511 34.615 0.00 0.00 0.00 2.52
140 141 6.308371 TCCCAACAACGTTCTTATTTTCTC 57.692 37.500 0.00 0.00 0.00 2.87
141 142 6.059484 TCCCAACAACGTTCTTATTTTCTCT 58.941 36.000 0.00 0.00 0.00 3.10
143 144 7.716123 TCCCAACAACGTTCTTATTTTCTCTTA 59.284 33.333 0.00 0.00 0.00 2.10
144 145 8.347035 CCCAACAACGTTCTTATTTTCTCTTAA 58.653 33.333 0.00 0.00 0.00 1.85
145 146 9.724839 CCAACAACGTTCTTATTTTCTCTTAAA 57.275 29.630 0.00 0.00 0.00 1.52
159 160 9.860898 ATTTTCTCTTAAATTATTCGCTTGCTT 57.139 25.926 0.00 0.00 0.00 3.91
162 163 8.718102 TCTCTTAAATTATTCGCTTGCTTACT 57.282 30.769 0.00 0.00 0.00 2.24
165 166 7.551262 TCTTAAATTATTCGCTTGCTTACTCCA 59.449 33.333 0.00 0.00 0.00 3.86
166 167 6.509418 AAATTATTCGCTTGCTTACTCCAA 57.491 33.333 0.00 0.00 0.00 3.53
167 168 6.509418 AATTATTCGCTTGCTTACTCCAAA 57.491 33.333 0.00 0.00 0.00 3.28
170 171 2.566913 TCGCTTGCTTACTCCAAACAA 58.433 42.857 0.00 0.00 0.00 2.83
171 172 2.548057 TCGCTTGCTTACTCCAAACAAG 59.452 45.455 0.00 0.00 40.49 3.16
172 173 2.290641 CGCTTGCTTACTCCAAACAAGT 59.709 45.455 0.00 0.00 39.86 3.16
173 174 3.632189 GCTTGCTTACTCCAAACAAGTG 58.368 45.455 0.00 0.00 39.86 3.16
174 175 3.550842 GCTTGCTTACTCCAAACAAGTGG 60.551 47.826 0.00 0.00 39.86 4.00
176 177 1.886542 GCTTACTCCAAACAAGTGGGG 59.113 52.381 0.00 0.00 45.60 4.96
180 181 0.184933 CTCCAAACAAGTGGGGTCCA 59.815 55.000 0.00 0.00 39.34 4.02
193 194 4.938575 TGGGGTCCACACTTATTATTGT 57.061 40.909 0.00 0.00 0.00 2.71
195 196 4.289934 TGGGGTCCACACTTATTATTGTGA 59.710 41.667 3.99 0.00 45.03 3.58
196 197 4.881850 GGGGTCCACACTTATTATTGTGAG 59.118 45.833 3.99 0.00 45.03 3.51
197 198 5.338871 GGGGTCCACACTTATTATTGTGAGA 60.339 44.000 3.99 0.00 45.03 3.27
198 199 6.357367 GGGTCCACACTTATTATTGTGAGAT 58.643 40.000 3.99 0.00 45.03 2.75
199 200 7.419750 GGGGTCCACACTTATTATTGTGAGATA 60.420 40.741 3.99 0.00 45.03 1.98
201 202 8.421784 GGTCCACACTTATTATTGTGAGATAGA 58.578 37.037 3.99 0.00 45.03 1.98
202 203 9.469807 GTCCACACTTATTATTGTGAGATAGAG 57.530 37.037 3.99 0.00 45.03 2.43
203 204 9.421399 TCCACACTTATTATTGTGAGATAGAGA 57.579 33.333 3.99 0.00 45.03 3.10
204 205 9.689976 CCACACTTATTATTGTGAGATAGAGAG 57.310 37.037 3.99 0.00 45.03 3.20
207 208 9.624697 CACTTATTATTGTGAGATAGAGAGAGC 57.375 37.037 0.00 0.00 36.38 4.09
208 209 9.586732 ACTTATTATTGTGAGATAGAGAGAGCT 57.413 33.333 0.00 0.00 0.00 4.09
209 210 9.844790 CTTATTATTGTGAGATAGAGAGAGCTG 57.155 37.037 0.00 0.00 0.00 4.24
211 212 5.772825 ATTGTGAGATAGAGAGAGCTGAC 57.227 43.478 0.00 0.00 0.00 3.51
212 213 4.227864 TGTGAGATAGAGAGAGCTGACA 57.772 45.455 0.00 0.00 0.00 3.58
213 214 4.790937 TGTGAGATAGAGAGAGCTGACAT 58.209 43.478 0.00 0.00 0.00 3.06
214 215 4.579753 TGTGAGATAGAGAGAGCTGACATG 59.420 45.833 0.00 0.00 0.00 3.21
215 216 4.580167 GTGAGATAGAGAGAGCTGACATGT 59.420 45.833 0.00 0.00 0.00 3.21
218 219 1.193323 AGAGAGAGCTGACATGTGGG 58.807 55.000 1.15 0.00 0.00 4.61
219 220 0.901124 GAGAGAGCTGACATGTGGGT 59.099 55.000 1.15 0.76 0.00 4.51
222 223 3.891977 GAGAGAGCTGACATGTGGGTATA 59.108 47.826 1.15 0.00 0.00 1.47
223 224 3.894427 AGAGAGCTGACATGTGGGTATAG 59.106 47.826 1.15 0.00 0.00 1.31
224 225 2.968574 AGAGCTGACATGTGGGTATAGG 59.031 50.000 1.15 0.00 0.00 2.57
225 226 2.037772 GAGCTGACATGTGGGTATAGGG 59.962 54.545 1.15 0.00 0.00 3.53
226 227 1.768870 GCTGACATGTGGGTATAGGGT 59.231 52.381 1.15 0.00 0.00 4.34
227 228 2.172717 GCTGACATGTGGGTATAGGGTT 59.827 50.000 1.15 0.00 0.00 4.11
228 229 3.389983 GCTGACATGTGGGTATAGGGTTA 59.610 47.826 1.15 0.00 0.00 2.85
230 231 5.456186 GCTGACATGTGGGTATAGGGTTATT 60.456 44.000 1.15 0.00 0.00 1.40
231 232 6.584471 TGACATGTGGGTATAGGGTTATTT 57.416 37.500 1.15 0.00 0.00 1.40
232 233 6.975949 TGACATGTGGGTATAGGGTTATTTT 58.024 36.000 1.15 0.00 0.00 1.82
235 236 7.186268 ACATGTGGGTATAGGGTTATTTTTGT 58.814 34.615 0.00 0.00 0.00 2.83
236 237 7.340999 ACATGTGGGTATAGGGTTATTTTTGTC 59.659 37.037 0.00 0.00 0.00 3.18
237 238 6.791371 TGTGGGTATAGGGTTATTTTTGTCA 58.209 36.000 0.00 0.00 0.00 3.58
238 239 7.415086 TGTGGGTATAGGGTTATTTTTGTCAT 58.585 34.615 0.00 0.00 0.00 3.06
240 241 9.411189 GTGGGTATAGGGTTATTTTTGTCATAA 57.589 33.333 0.00 0.00 0.00 1.90
241 242 9.411189 TGGGTATAGGGTTATTTTTGTCATAAC 57.589 33.333 0.00 0.00 36.67 1.89
246 247 7.790782 AGGGTTATTTTTGTCATAACATGGT 57.209 32.000 0.00 0.00 38.40 3.55
247 248 7.836842 AGGGTTATTTTTGTCATAACATGGTC 58.163 34.615 0.00 0.00 38.40 4.02
248 249 7.453126 AGGGTTATTTTTGTCATAACATGGTCA 59.547 33.333 0.00 0.00 38.40 4.02
249 250 8.091449 GGGTTATTTTTGTCATAACATGGTCAA 58.909 33.333 0.00 0.00 38.40 3.18
250 251 9.651913 GGTTATTTTTGTCATAACATGGTCAAT 57.348 29.630 0.00 0.00 38.40 2.57
254 255 7.523293 TTTTGTCATAACATGGTCAATGAGT 57.477 32.000 0.00 0.00 38.72 3.41
255 256 7.523293 TTTGTCATAACATGGTCAATGAGTT 57.477 32.000 0.00 0.00 38.72 3.01
257 258 6.912082 TGTCATAACATGGTCAATGAGTTTG 58.088 36.000 0.00 0.00 38.72 2.93
258 259 6.714356 TGTCATAACATGGTCAATGAGTTTGA 59.286 34.615 0.00 0.00 42.09 2.69
270 271 7.202016 TCAATGAGTTTGACCTGACAATAAC 57.798 36.000 0.00 0.00 39.44 1.89
272 273 4.951254 TGAGTTTGACCTGACAATAACGA 58.049 39.130 0.00 0.00 0.00 3.85
274 275 5.408299 TGAGTTTGACCTGACAATAACGATG 59.592 40.000 0.00 0.00 0.00 3.84
275 276 5.305585 AGTTTGACCTGACAATAACGATGT 58.694 37.500 0.00 0.00 0.00 3.06
276 277 5.408604 AGTTTGACCTGACAATAACGATGTC 59.591 40.000 0.00 0.00 45.82 3.06
277 278 4.801330 TGACCTGACAATAACGATGTCT 57.199 40.909 8.01 0.00 45.81 3.41
278 279 4.494484 TGACCTGACAATAACGATGTCTG 58.506 43.478 8.01 7.26 45.81 3.51
279 280 4.219725 TGACCTGACAATAACGATGTCTGA 59.780 41.667 13.06 0.00 45.81 3.27
280 281 5.105351 TGACCTGACAATAACGATGTCTGAT 60.105 40.000 13.06 0.00 45.81 2.90
282 283 4.509230 CCTGACAATAACGATGTCTGATGG 59.491 45.833 13.06 5.23 45.81 3.51
284 285 3.871006 GACAATAACGATGTCTGATGGCA 59.129 43.478 0.00 0.00 43.03 4.92
285 286 4.454678 ACAATAACGATGTCTGATGGCAT 58.545 39.130 0.00 0.00 0.00 4.40
287 288 5.357878 ACAATAACGATGTCTGATGGCATTT 59.642 36.000 0.00 0.00 0.00 2.32
288 289 5.679734 ATAACGATGTCTGATGGCATTTC 57.320 39.130 0.00 0.00 0.00 2.17
290 291 2.941064 ACGATGTCTGATGGCATTTCAG 59.059 45.455 11.10 11.10 41.61 3.02
291 292 3.200483 CGATGTCTGATGGCATTTCAGA 58.800 45.455 15.09 15.09 45.53 3.27
300 301 8.162878 TCTGATGGCATTTCAGAGAAAATATC 57.837 34.615 15.09 0.00 43.49 1.63
301 302 7.997223 TCTGATGGCATTTCAGAGAAAATATCT 59.003 33.333 15.09 0.00 43.49 1.98
302 303 9.281371 CTGATGGCATTTCAGAGAAAATATCTA 57.719 33.333 11.80 0.00 42.63 1.98
303 304 9.631257 TGATGGCATTTCAGAGAAAATATCTAA 57.369 29.630 0.00 0.00 38.96 2.10
306 307 8.853126 TGGCATTTCAGAGAAAATATCTAATGG 58.147 33.333 0.00 0.00 38.96 3.16
307 308 9.071276 GGCATTTCAGAGAAAATATCTAATGGA 57.929 33.333 0.00 0.00 38.96 3.41
315 316 8.854117 AGAGAAAATATCTAATGGAACAATGGC 58.146 33.333 0.00 0.00 40.01 4.40
316 317 8.537728 AGAAAATATCTAATGGAACAATGGCA 57.462 30.769 0.00 0.00 38.40 4.92
317 318 9.151177 AGAAAATATCTAATGGAACAATGGCAT 57.849 29.630 0.00 0.00 38.40 4.40
325 326 4.952071 TGGAACAATGGCATTTTTGAGA 57.048 36.364 15.77 0.00 31.92 3.27
326 327 5.287674 TGGAACAATGGCATTTTTGAGAA 57.712 34.783 15.77 0.00 31.92 2.87
327 328 5.678583 TGGAACAATGGCATTTTTGAGAAA 58.321 33.333 15.77 0.00 31.92 2.52
330 331 6.038050 GGAACAATGGCATTTTTGAGAAAACA 59.962 34.615 15.77 0.00 37.56 2.83
331 332 7.255208 GGAACAATGGCATTTTTGAGAAAACAT 60.255 33.333 15.77 0.00 37.56 2.71
333 334 6.993902 ACAATGGCATTTTTGAGAAAACATCT 59.006 30.769 10.65 0.00 42.61 2.90
334 335 7.499895 ACAATGGCATTTTTGAGAAAACATCTT 59.500 29.630 10.65 0.00 38.96 2.40
335 336 8.991026 CAATGGCATTTTTGAGAAAACATCTTA 58.009 29.630 10.65 0.00 38.96 2.10
338 339 6.089417 GGCATTTTTGAGAAAACATCTTACGG 59.911 38.462 0.00 0.00 38.96 4.02
339 340 6.861055 GCATTTTTGAGAAAACATCTTACGGA 59.139 34.615 0.00 0.00 38.96 4.69
341 342 5.607119 TTTGAGAAAACATCTTACGGAGC 57.393 39.130 0.00 0.00 38.96 4.70
343 344 3.057104 TGAGAAAACATCTTACGGAGCGA 60.057 43.478 0.00 0.00 38.96 4.93
344 345 4.113354 GAGAAAACATCTTACGGAGCGAT 58.887 43.478 0.00 0.00 38.96 4.58
347 348 0.249489 ACATCTTACGGAGCGATGGC 60.249 55.000 12.08 0.00 39.00 4.40
348 349 0.249447 CATCTTACGGAGCGATGGCA 60.249 55.000 1.50 0.00 43.41 4.92
349 350 0.681733 ATCTTACGGAGCGATGGCAT 59.318 50.000 0.00 0.00 43.41 4.40
350 351 0.464036 TCTTACGGAGCGATGGCATT 59.536 50.000 0.00 0.00 43.41 3.56
351 352 1.134521 TCTTACGGAGCGATGGCATTT 60.135 47.619 0.00 0.00 43.41 2.32
353 354 1.745232 TACGGAGCGATGGCATTTTT 58.255 45.000 0.00 0.00 43.41 1.94
354 355 0.171007 ACGGAGCGATGGCATTTTTG 59.829 50.000 0.00 0.00 43.41 2.44
355 356 0.451383 CGGAGCGATGGCATTTTTGA 59.549 50.000 0.00 0.00 43.41 2.69
358 359 0.889994 AGCGATGGCATTTTTGAGCA 59.110 45.000 0.00 0.00 43.41 4.26
360 361 1.403249 GCGATGGCATTTTTGAGCAGT 60.403 47.619 0.00 0.00 39.62 4.40
361 362 2.927871 GCGATGGCATTTTTGAGCAGTT 60.928 45.455 0.00 0.00 39.62 3.16
362 363 2.664568 CGATGGCATTTTTGAGCAGTTG 59.335 45.455 0.00 0.00 0.00 3.16
363 364 3.656559 GATGGCATTTTTGAGCAGTTGT 58.343 40.909 0.00 0.00 0.00 3.32
364 365 4.615682 CGATGGCATTTTTGAGCAGTTGTA 60.616 41.667 0.00 0.00 0.00 2.41
365 366 4.662468 TGGCATTTTTGAGCAGTTGTAA 57.338 36.364 0.00 0.00 0.00 2.41
366 367 5.212532 TGGCATTTTTGAGCAGTTGTAAT 57.787 34.783 0.00 0.00 0.00 1.89
367 368 5.609423 TGGCATTTTTGAGCAGTTGTAATT 58.391 33.333 0.00 0.00 0.00 1.40
368 369 6.054295 TGGCATTTTTGAGCAGTTGTAATTT 58.946 32.000 0.00 0.00 0.00 1.82
370 371 6.424812 GGCATTTTTGAGCAGTTGTAATTTCT 59.575 34.615 0.00 0.00 0.00 2.52
371 372 7.598493 GGCATTTTTGAGCAGTTGTAATTTCTA 59.402 33.333 0.00 0.00 0.00 2.10
372 373 8.977505 GCATTTTTGAGCAGTTGTAATTTCTAA 58.022 29.630 0.00 0.00 0.00 2.10
377 378 7.977789 TGAGCAGTTGTAATTTCTAATGACA 57.022 32.000 0.00 0.00 0.00 3.58
378 379 8.389779 TGAGCAGTTGTAATTTCTAATGACAA 57.610 30.769 0.00 0.00 0.00 3.18
379 380 8.845227 TGAGCAGTTGTAATTTCTAATGACAAA 58.155 29.630 4.34 0.00 32.20 2.83
380 381 9.677567 GAGCAGTTGTAATTTCTAATGACAAAA 57.322 29.630 4.34 0.00 32.20 2.44
381 382 9.463443 AGCAGTTGTAATTTCTAATGACAAAAC 57.537 29.630 4.34 0.00 32.20 2.43
382 383 9.463443 GCAGTTGTAATTTCTAATGACAAAACT 57.537 29.630 4.34 0.00 32.20 2.66
391 392 9.778741 ATTTCTAATGACAAAACTGAGTAGTGA 57.221 29.630 2.82 0.00 37.19 3.41
392 393 8.818141 TTCTAATGACAAAACTGAGTAGTGAG 57.182 34.615 2.82 0.00 37.19 3.51
393 394 8.178313 TCTAATGACAAAACTGAGTAGTGAGA 57.822 34.615 2.82 0.00 37.19 3.27
394 395 8.082852 TCTAATGACAAAACTGAGTAGTGAGAC 58.917 37.037 2.82 0.00 37.19 3.36
395 396 5.592104 TGACAAAACTGAGTAGTGAGACA 57.408 39.130 2.82 0.00 37.19 3.41
396 397 5.348986 TGACAAAACTGAGTAGTGAGACAC 58.651 41.667 2.82 0.00 37.19 3.67
397 398 5.105513 TGACAAAACTGAGTAGTGAGACACA 60.106 40.000 4.75 0.00 37.19 3.72
398 399 5.730550 ACAAAACTGAGTAGTGAGACACAA 58.269 37.500 4.75 0.00 37.19 3.33
399 400 5.581085 ACAAAACTGAGTAGTGAGACACAAC 59.419 40.000 4.75 0.00 37.19 3.32
401 402 6.710597 AAACTGAGTAGTGAGACACAACTA 57.289 37.500 4.75 0.00 37.19 2.24
402 403 5.950758 ACTGAGTAGTGAGACACAACTAG 57.049 43.478 4.75 0.00 36.74 2.57
403 404 5.378332 ACTGAGTAGTGAGACACAACTAGT 58.622 41.667 4.75 0.00 36.74 2.57
420 421 9.853555 CACAACTAGTGGCATAAATGATAAAAA 57.146 29.630 0.00 0.00 44.69 1.94
421 422 9.855021 ACAACTAGTGGCATAAATGATAAAAAC 57.145 29.630 0.00 0.00 0.00 2.43
423 424 8.007405 ACTAGTGGCATAAATGATAAAAACCC 57.993 34.615 0.00 0.00 0.00 4.11
424 425 7.839200 ACTAGTGGCATAAATGATAAAAACCCT 59.161 33.333 0.00 0.00 0.00 4.34
425 426 7.494922 AGTGGCATAAATGATAAAAACCCTT 57.505 32.000 0.00 0.00 0.00 3.95
426 427 7.917003 AGTGGCATAAATGATAAAAACCCTTT 58.083 30.769 0.00 0.00 0.00 3.11
427 428 8.382405 AGTGGCATAAATGATAAAAACCCTTTT 58.618 29.630 0.00 0.00 38.34 2.27
428 429 8.664798 GTGGCATAAATGATAAAAACCCTTTTC 58.335 33.333 0.00 0.00 36.20 2.29
429 430 7.547370 TGGCATAAATGATAAAAACCCTTTTCG 59.453 33.333 0.00 0.00 36.20 3.46
430 431 7.762159 GGCATAAATGATAAAAACCCTTTTCGA 59.238 33.333 0.00 0.00 36.20 3.71
431 432 9.145865 GCATAAATGATAAAAACCCTTTTCGAA 57.854 29.630 0.00 0.00 36.20 3.71
498 499 8.373256 GTTTCTTTTCTTTTCTTCAAACTTCCG 58.627 33.333 0.00 0.00 0.00 4.30
501 502 8.085909 TCTTTTCTTTTCTTCAAACTTCCGTTT 58.914 29.630 0.00 0.00 43.85 3.60
540 541 1.824852 GGTGATCAATCCAAACCACCC 59.175 52.381 0.00 0.00 38.40 4.61
551 552 1.075374 CAAACCACCCATTCCTCCTCA 59.925 52.381 0.00 0.00 0.00 3.86
560 561 3.499202 CCCATTCCTCCTCACCATATTGG 60.499 52.174 0.00 0.00 45.02 3.16
563 564 2.421725 TCCTCCTCACCATATTGGCAT 58.578 47.619 0.00 0.00 42.67 4.40
585 586 7.226523 GGCATGTCTTTGTTTGTTTTAGGAAAT 59.773 33.333 0.00 0.00 0.00 2.17
605 606 9.227777 AGGAAATATCGCCAAGTTTATATAACC 57.772 33.333 0.00 0.00 0.00 2.85
606 607 9.005777 GGAAATATCGCCAAGTTTATATAACCA 57.994 33.333 0.00 0.00 0.00 3.67
690 2251 6.223852 ACCGCTCTATACCATCATAGTTTTG 58.776 40.000 0.00 0.00 31.57 2.44
711 2272 9.385902 GTTTTGTTAGGAAATTAAGACGTAACC 57.614 33.333 0.00 0.00 35.46 2.85
714 2275 7.215789 TGTTAGGAAATTAAGACGTAACCACA 58.784 34.615 0.00 0.00 35.46 4.17
715 2276 7.879160 TGTTAGGAAATTAAGACGTAACCACAT 59.121 33.333 0.00 0.00 35.46 3.21
716 2277 6.737254 AGGAAATTAAGACGTAACCACATG 57.263 37.500 0.00 0.00 0.00 3.21
717 2278 5.123344 AGGAAATTAAGACGTAACCACATGC 59.877 40.000 0.00 0.00 0.00 4.06
718 2279 5.106475 GGAAATTAAGACGTAACCACATGCA 60.106 40.000 0.00 0.00 0.00 3.96
719 2280 6.404293 GGAAATTAAGACGTAACCACATGCAT 60.404 38.462 0.00 0.00 0.00 3.96
720 2281 7.201661 GGAAATTAAGACGTAACCACATGCATA 60.202 37.037 0.00 0.00 0.00 3.14
723 2284 4.202245 AGACGTAACCACATGCATAAGT 57.798 40.909 0.00 0.00 0.00 2.24
724 2285 4.575885 AGACGTAACCACATGCATAAGTT 58.424 39.130 0.00 6.15 0.00 2.66
725 2286 4.630069 AGACGTAACCACATGCATAAGTTC 59.370 41.667 0.00 0.00 0.00 3.01
726 2287 4.320023 ACGTAACCACATGCATAAGTTCA 58.680 39.130 0.00 0.00 0.00 3.18
727 2288 4.757657 ACGTAACCACATGCATAAGTTCAA 59.242 37.500 0.00 0.00 0.00 2.69
728 2289 5.239744 ACGTAACCACATGCATAAGTTCAAA 59.760 36.000 0.00 0.00 0.00 2.69
730 2291 6.638873 CGTAACCACATGCATAAGTTCAAAAA 59.361 34.615 0.00 0.00 0.00 1.94
756 2317 3.674997 AGACGTAACCACATGCATCTTT 58.325 40.909 0.00 0.00 0.00 2.52
769 2330 1.717645 GCATCTTTCAAAAGCTGTGCG 59.282 47.619 7.83 0.00 35.26 5.34
801 2362 2.993899 CGTGTTTCTTCCTACGCAAGAT 59.006 45.455 0.00 0.00 43.62 2.40
810 2371 5.523916 TCTTCCTACGCAAGATCATAAAAGC 59.476 40.000 0.00 0.00 43.62 3.51
892 2453 6.126568 TCTTTCTACAAAACCCTTCAAACG 57.873 37.500 0.00 0.00 0.00 3.60
942 2503 4.566004 ACACGTATGGATAAATGGATCGG 58.434 43.478 0.00 0.00 0.00 4.18
1024 3699 1.002033 AGTGTCACCGTGTCGTTAGTC 60.002 52.381 0.00 0.00 0.00 2.59
1037 3718 3.332493 TTAGTCTGGTCGCGGTCGC 62.332 63.158 6.13 5.16 35.26 5.19
1116 3797 0.390340 CCATCACGGTGGACAGTCAG 60.390 60.000 8.50 0.00 42.02 3.51
1235 4301 1.006102 CCGTCGTCCTTGCTCAACT 60.006 57.895 0.00 0.00 0.00 3.16
1279 4346 1.604755 TGTTTATGTTGGTCACGTGGC 59.395 47.619 17.00 15.01 0.00 5.01
1299 4366 1.599047 CGTGCAGGGAGAAGGTGAT 59.401 57.895 0.00 0.00 0.00 3.06
1300 4367 0.036010 CGTGCAGGGAGAAGGTGATT 60.036 55.000 0.00 0.00 0.00 2.57
1308 4375 1.270893 GGAGAAGGTGATTATCCCGGC 60.271 57.143 0.00 0.00 42.52 6.13
1363 4430 1.628340 TCCTGGAACACGGACATCAAT 59.372 47.619 0.00 0.00 32.34 2.57
1453 4533 2.833582 ACCGTCCTCGCCGATGAT 60.834 61.111 0.00 0.00 35.54 2.45
1588 4668 1.423161 GCCTTCCATAGCTTCCAGGAT 59.577 52.381 0.00 0.00 0.00 3.24
1681 4761 0.969894 GCTACGGCCAGTCCATCTAT 59.030 55.000 2.24 0.00 34.01 1.98
1684 4764 1.722034 ACGGCCAGTCCATCTATGAT 58.278 50.000 2.24 0.00 34.01 2.45
2021 5104 1.357991 GGAGAAGCAACTGAGCGAGC 61.358 60.000 0.00 0.00 40.15 5.03
2095 5181 3.827625 CGAGCAGCCATACTAGTATGAC 58.172 50.000 34.61 27.00 44.22 3.06
2102 5188 3.849911 CCATACTAGTATGACATGGCCG 58.150 50.000 34.61 17.21 44.22 6.13
2115 5201 2.035783 GGCCGGGCCTTCTTTTCT 59.964 61.111 30.86 0.00 46.69 2.52
2130 5216 4.632153 TCTTTTCTACAACTCACTCCTGC 58.368 43.478 0.00 0.00 0.00 4.85
2135 5221 1.888215 ACAACTCACTCCTGCATGTG 58.112 50.000 7.92 7.92 35.68 3.21
2137 5223 1.534163 CAACTCACTCCTGCATGTGTG 59.466 52.381 15.43 15.43 35.82 3.82
2159 5291 0.886490 AGTGGCTGGAAAAGTGCTCG 60.886 55.000 0.00 0.00 0.00 5.03
2160 5292 0.884704 GTGGCTGGAAAAGTGCTCGA 60.885 55.000 0.00 0.00 0.00 4.04
2161 5293 0.036732 TGGCTGGAAAAGTGCTCGAT 59.963 50.000 0.00 0.00 0.00 3.59
2162 5294 0.729690 GGCTGGAAAAGTGCTCGATC 59.270 55.000 0.00 0.00 0.00 3.69
2163 5295 1.442769 GCTGGAAAAGTGCTCGATCA 58.557 50.000 0.00 0.00 0.00 2.92
2205 5337 5.994668 ACACCAATCTGTTTTGTTTGTTTGT 59.005 32.000 0.00 0.00 0.00 2.83
2245 5377 9.461312 AGCATCTGTATTTAGGAAAACATACAA 57.539 29.630 0.00 0.00 0.00 2.41
2289 5446 7.448748 AAACAACTCATACTATTGTTCCACC 57.551 36.000 2.35 0.00 43.85 4.61
2290 5447 6.121776 ACAACTCATACTATTGTTCCACCA 57.878 37.500 0.00 0.00 32.70 4.17
2291 5448 5.938125 ACAACTCATACTATTGTTCCACCAC 59.062 40.000 0.00 0.00 32.70 4.16
2292 5449 5.099042 ACTCATACTATTGTTCCACCACC 57.901 43.478 0.00 0.00 0.00 4.61
2320 5477 6.530913 AAACGTCATCGAAATCCAGATATG 57.469 37.500 0.00 0.00 40.62 1.78
2328 5485 8.037166 TCATCGAAATCCAGATATGAATAGTGG 58.963 37.037 0.00 0.00 0.00 4.00
2548 5709 4.395959 AGCACCTGATATTTTTGGCATG 57.604 40.909 0.00 0.00 0.00 4.06
2561 5722 1.148048 GGCATGGGAAGAGAGAGGC 59.852 63.158 0.00 0.00 0.00 4.70
2641 5802 2.367202 GCCGGACATTCCTCCTCCA 61.367 63.158 5.05 0.00 33.30 3.86
2773 6378 5.902613 TCTTTCGGGTCGATTAAGTCTAA 57.097 39.130 0.00 0.00 35.23 2.10
2893 7162 4.380867 GCCTTTTATGGTGATTGGTGTCTG 60.381 45.833 0.00 0.00 0.00 3.51
2896 7165 2.496899 ATGGTGATTGGTGTCTGGAC 57.503 50.000 0.00 0.00 0.00 4.02
2918 7187 0.537188 CCATCAGCCGAACTACACCT 59.463 55.000 0.00 0.00 0.00 4.00
2962 7231 0.824109 GTCCATCTCCCGTGACATGA 59.176 55.000 0.00 0.00 0.00 3.07
2963 7232 1.114627 TCCATCTCCCGTGACATGAG 58.885 55.000 0.00 0.00 0.00 2.90
2964 7233 0.105593 CCATCTCCCGTGACATGAGG 59.894 60.000 0.00 0.00 0.00 3.86
2967 7236 0.608130 TCTCCCGTGACATGAGGTTG 59.392 55.000 0.00 0.00 0.00 3.77
2968 7237 0.391661 CTCCCGTGACATGAGGTTGG 60.392 60.000 0.00 0.00 0.00 3.77
2970 7239 2.040544 CCGTGACATGAGGTTGGGC 61.041 63.158 0.00 0.00 0.00 5.36
2971 7240 2.040544 CGTGACATGAGGTTGGGCC 61.041 63.158 0.00 0.00 37.58 5.80
2972 7241 1.678970 GTGACATGAGGTTGGGCCC 60.679 63.158 17.59 17.59 38.26 5.80
2975 7244 0.681243 GACATGAGGTTGGGCCCTTC 60.681 60.000 25.70 15.66 38.26 3.46
2977 7246 0.251742 CATGAGGTTGGGCCCTTCAA 60.252 55.000 25.70 6.04 38.26 2.69
2978 7247 0.040204 ATGAGGTTGGGCCCTTCAAG 59.960 55.000 25.70 0.00 38.26 3.02
2979 7248 1.304464 GAGGTTGGGCCCTTCAAGG 60.304 63.158 25.70 0.00 38.26 3.61
2989 7258 2.035530 CCCTTCAAGGCAAGCTAGAG 57.964 55.000 0.00 0.00 32.73 2.43
2990 7259 1.377536 CCTTCAAGGCAAGCTAGAGC 58.622 55.000 0.00 0.00 42.49 4.09
2993 7262 3.432749 CCTTCAAGGCAAGCTAGAGCATA 60.433 47.826 4.01 0.00 45.16 3.14
2994 7263 3.912496 TCAAGGCAAGCTAGAGCATAA 57.088 42.857 4.01 0.00 45.16 1.90
2995 7264 3.535561 TCAAGGCAAGCTAGAGCATAAC 58.464 45.455 4.01 0.00 45.16 1.89
2996 7265 3.198635 TCAAGGCAAGCTAGAGCATAACT 59.801 43.478 4.01 0.00 45.16 2.24
2998 7267 4.329462 AGGCAAGCTAGAGCATAACTAC 57.671 45.455 4.01 0.00 45.16 2.73
3000 7269 3.804873 GGCAAGCTAGAGCATAACTACAC 59.195 47.826 4.01 0.00 45.16 2.90
3001 7270 3.487574 GCAAGCTAGAGCATAACTACACG 59.512 47.826 4.01 0.00 45.16 4.49
3002 7271 4.673441 CAAGCTAGAGCATAACTACACGT 58.327 43.478 4.01 0.00 45.16 4.49
3003 7272 4.294416 AGCTAGAGCATAACTACACGTG 57.706 45.455 15.48 15.48 45.16 4.49
3004 7273 3.066900 AGCTAGAGCATAACTACACGTGG 59.933 47.826 21.57 5.28 45.16 4.94
3005 7274 2.295253 AGAGCATAACTACACGTGGC 57.705 50.000 21.57 11.50 0.00 5.01
3028 7308 1.275573 GGGAAGGGCGAGTATATCCAC 59.724 57.143 0.00 0.00 0.00 4.02
3032 7312 0.037232 GGGCGAGTATATCCACTGGC 60.037 60.000 4.51 4.51 46.13 4.85
3041 7321 1.191535 TATCCACTGGCTACGCTTGT 58.808 50.000 0.00 0.00 0.00 3.16
3054 7334 3.698029 ACGCTTGTTCCATTATCATGC 57.302 42.857 0.00 0.00 0.00 4.06
3082 7362 0.317479 AACCCGTCTTTCAGAGGTCG 59.683 55.000 0.00 0.00 0.00 4.79
3083 7363 1.215647 CCCGTCTTTCAGAGGTCGG 59.784 63.158 0.00 0.00 40.35 4.79
3084 7364 1.215647 CCGTCTTTCAGAGGTCGGG 59.784 63.158 0.00 0.00 38.56 5.14
3087 7367 1.000506 CGTCTTTCAGAGGTCGGGAAA 59.999 52.381 0.00 0.00 0.00 3.13
3089 7369 3.473625 GTCTTTCAGAGGTCGGGAAAAA 58.526 45.455 0.00 0.00 30.87 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.703416 TGAGCTGACAATCATGGTGTC 58.297 47.619 18.32 18.32 44.67 3.67
1 2 2.865119 TGAGCTGACAATCATGGTGT 57.135 45.000 0.00 2.97 0.00 4.16
3 4 4.597004 AGATTTGAGCTGACAATCATGGT 58.403 39.130 0.00 0.00 0.00 3.55
4 5 4.260661 CGAGATTTGAGCTGACAATCATGG 60.261 45.833 0.00 0.00 0.00 3.66
6 7 4.511527 ACGAGATTTGAGCTGACAATCAT 58.488 39.130 0.00 0.00 0.00 2.45
7 8 3.930336 ACGAGATTTGAGCTGACAATCA 58.070 40.909 0.00 0.00 0.00 2.57
8 9 4.935885 AACGAGATTTGAGCTGACAATC 57.064 40.909 0.00 0.00 0.00 2.67
20 21 5.895636 TTATGACATGGCAAACGAGATTT 57.104 34.783 4.70 0.00 0.00 2.17
21 22 5.589855 TCATTATGACATGGCAAACGAGATT 59.410 36.000 4.70 0.00 0.00 2.40
23 24 4.332543 GTCATTATGACATGGCAAACGAGA 59.667 41.667 19.23 0.00 46.22 4.04
24 25 4.591202 GTCATTATGACATGGCAAACGAG 58.409 43.478 19.23 0.00 46.22 4.18
25 26 4.614555 GTCATTATGACATGGCAAACGA 57.385 40.909 19.23 0.00 46.22 3.85
37 38 9.944376 GCTCTATAGTTATTTGGGTCATTATGA 57.056 33.333 0.00 0.00 0.00 2.15
40 41 9.555727 GTTGCTCTATAGTTATTTGGGTCATTA 57.444 33.333 0.00 0.00 0.00 1.90
41 42 8.052748 TGTTGCTCTATAGTTATTTGGGTCATT 58.947 33.333 0.00 0.00 0.00 2.57
42 43 7.573710 TGTTGCTCTATAGTTATTTGGGTCAT 58.426 34.615 0.00 0.00 0.00 3.06
44 45 7.499232 ACATGTTGCTCTATAGTTATTTGGGTC 59.501 37.037 0.00 0.00 0.00 4.46
46 47 7.498900 TGACATGTTGCTCTATAGTTATTTGGG 59.501 37.037 0.00 0.00 0.00 4.12
47 48 8.437360 TGACATGTTGCTCTATAGTTATTTGG 57.563 34.615 0.00 0.00 0.00 3.28
48 49 8.066595 GCTGACATGTTGCTCTATAGTTATTTG 58.933 37.037 14.84 0.00 0.00 2.32
49 50 7.989741 AGCTGACATGTTGCTCTATAGTTATTT 59.010 33.333 17.83 0.00 30.41 1.40
50 51 7.504403 AGCTGACATGTTGCTCTATAGTTATT 58.496 34.615 17.83 0.00 30.41 1.40
51 52 7.060383 AGCTGACATGTTGCTCTATAGTTAT 57.940 36.000 17.83 0.00 30.41 1.89
52 53 6.471233 AGCTGACATGTTGCTCTATAGTTA 57.529 37.500 17.83 0.00 30.41 2.24
53 54 5.350504 AGCTGACATGTTGCTCTATAGTT 57.649 39.130 17.83 0.00 30.41 2.24
54 55 4.942852 GAGCTGACATGTTGCTCTATAGT 58.057 43.478 30.63 11.59 46.69 2.12
62 63 0.035630 AGGGAGAGCTGACATGTTGC 60.036 55.000 14.44 14.44 0.00 4.17
63 64 1.554160 AGAGGGAGAGCTGACATGTTG 59.446 52.381 0.00 0.00 0.00 3.33
64 65 1.949799 AGAGGGAGAGCTGACATGTT 58.050 50.000 0.00 0.00 0.00 2.71
65 66 2.836636 TAGAGGGAGAGCTGACATGT 57.163 50.000 0.00 0.00 0.00 3.21
66 67 3.499338 AGATAGAGGGAGAGCTGACATG 58.501 50.000 0.00 0.00 0.00 3.21
67 68 3.139957 TGAGATAGAGGGAGAGCTGACAT 59.860 47.826 0.00 0.00 0.00 3.06
70 71 2.782925 AGTGAGATAGAGGGAGAGCTGA 59.217 50.000 0.00 0.00 0.00 4.26
72 73 3.719479 TGTAGTGAGATAGAGGGAGAGCT 59.281 47.826 0.00 0.00 0.00 4.09
74 75 8.698973 TTTATTGTAGTGAGATAGAGGGAGAG 57.301 38.462 0.00 0.00 0.00 3.20
75 76 8.282982 ACTTTATTGTAGTGAGATAGAGGGAGA 58.717 37.037 0.00 0.00 0.00 3.71
76 77 8.356657 CACTTTATTGTAGTGAGATAGAGGGAG 58.643 40.741 0.00 0.00 44.52 4.30
77 78 7.839705 ACACTTTATTGTAGTGAGATAGAGGGA 59.160 37.037 9.74 0.00 44.52 4.20
78 79 7.923344 CACACTTTATTGTAGTGAGATAGAGGG 59.077 40.741 9.74 0.00 44.52 4.30
79 80 7.923344 CCACACTTTATTGTAGTGAGATAGAGG 59.077 40.741 9.74 0.00 44.52 3.69
81 82 7.399191 ACCCACACTTTATTGTAGTGAGATAGA 59.601 37.037 9.74 0.00 44.52 1.98
83 84 7.364408 GGACCCACACTTTATTGTAGTGAGATA 60.364 40.741 9.74 0.00 44.52 1.98
84 85 6.374417 ACCCACACTTTATTGTAGTGAGAT 57.626 37.500 9.74 0.00 44.52 2.75
85 86 5.279809 GGACCCACACTTTATTGTAGTGAGA 60.280 44.000 9.74 0.00 44.52 3.27
87 88 4.348461 TGGACCCACACTTTATTGTAGTGA 59.652 41.667 9.74 0.00 44.52 3.41
89 90 4.986054 TGGACCCACACTTTATTGTAGT 57.014 40.909 0.00 0.00 0.00 2.73
90 91 5.313712 AGTTGGACCCACACTTTATTGTAG 58.686 41.667 0.00 0.00 0.00 2.74
91 92 5.313280 AGTTGGACCCACACTTTATTGTA 57.687 39.130 0.00 0.00 0.00 2.41
92 93 4.178956 AGTTGGACCCACACTTTATTGT 57.821 40.909 0.00 0.00 0.00 2.71
93 94 4.582656 TCAAGTTGGACCCACACTTTATTG 59.417 41.667 2.34 0.00 30.73 1.90
94 95 4.798882 TCAAGTTGGACCCACACTTTATT 58.201 39.130 2.34 0.00 30.73 1.40
95 96 4.447138 TCAAGTTGGACCCACACTTTAT 57.553 40.909 2.34 0.00 30.73 1.40
96 97 3.935818 TCAAGTTGGACCCACACTTTA 57.064 42.857 2.34 4.84 30.73 1.85
98 99 2.489073 GGATCAAGTTGGACCCACACTT 60.489 50.000 2.34 9.34 32.11 3.16
100 101 1.534729 GGATCAAGTTGGACCCACAC 58.465 55.000 2.34 0.00 0.00 3.82
101 102 0.404040 GGGATCAAGTTGGACCCACA 59.596 55.000 23.68 0.00 40.20 4.17
102 103 0.404040 TGGGATCAAGTTGGACCCAC 59.596 55.000 25.89 10.65 44.50 4.61
103 104 2.875704 TGGGATCAAGTTGGACCCA 58.124 52.632 25.89 25.89 46.74 4.51
104 105 1.203001 TGTTGGGATCAAGTTGGACCC 60.203 52.381 22.59 22.59 40.79 4.46
106 107 2.031157 CGTTGTTGGGATCAAGTTGGAC 60.031 50.000 2.34 0.00 32.92 4.02
107 108 2.226330 CGTTGTTGGGATCAAGTTGGA 58.774 47.619 2.34 0.00 32.92 3.53
108 109 1.953686 ACGTTGTTGGGATCAAGTTGG 59.046 47.619 2.34 0.00 32.92 3.77
109 110 3.315191 AGAACGTTGTTGGGATCAAGTTG 59.685 43.478 5.00 0.00 32.92 3.16
110 111 3.551846 AGAACGTTGTTGGGATCAAGTT 58.448 40.909 5.00 0.00 32.92 2.66
112 113 5.880054 ATAAGAACGTTGTTGGGATCAAG 57.120 39.130 19.93 0.00 32.92 3.02
113 114 6.642707 AAATAAGAACGTTGTTGGGATCAA 57.357 33.333 19.93 0.00 0.00 2.57
114 115 6.488683 AGAAAATAAGAACGTTGTTGGGATCA 59.511 34.615 19.93 0.00 0.00 2.92
116 117 6.715264 AGAGAAAATAAGAACGTTGTTGGGAT 59.285 34.615 19.93 3.67 0.00 3.85
117 118 6.059484 AGAGAAAATAAGAACGTTGTTGGGA 58.941 36.000 19.93 1.23 0.00 4.37
118 119 6.313744 AGAGAAAATAAGAACGTTGTTGGG 57.686 37.500 19.93 0.00 0.00 4.12
133 134 9.860898 AAGCAAGCGAATAATTTAAGAGAAAAT 57.139 25.926 0.00 0.00 0.00 1.82
135 136 9.769093 GTAAGCAAGCGAATAATTTAAGAGAAA 57.231 29.630 0.00 0.00 0.00 2.52
136 137 9.162764 AGTAAGCAAGCGAATAATTTAAGAGAA 57.837 29.630 0.00 0.00 0.00 2.87
137 138 8.718102 AGTAAGCAAGCGAATAATTTAAGAGA 57.282 30.769 0.00 0.00 0.00 3.10
138 139 8.064814 GGAGTAAGCAAGCGAATAATTTAAGAG 58.935 37.037 0.00 0.00 0.00 2.85
139 140 7.551262 TGGAGTAAGCAAGCGAATAATTTAAGA 59.449 33.333 0.00 0.00 0.00 2.10
140 141 7.693952 TGGAGTAAGCAAGCGAATAATTTAAG 58.306 34.615 0.00 0.00 0.00 1.85
141 142 7.618502 TGGAGTAAGCAAGCGAATAATTTAA 57.381 32.000 0.00 0.00 0.00 1.52
143 144 6.509418 TTGGAGTAAGCAAGCGAATAATTT 57.491 33.333 0.00 0.00 0.00 1.82
144 145 6.072175 TGTTTGGAGTAAGCAAGCGAATAATT 60.072 34.615 0.00 0.00 0.00 1.40
145 146 5.414454 TGTTTGGAGTAAGCAAGCGAATAAT 59.586 36.000 0.00 0.00 0.00 1.28
146 147 4.757657 TGTTTGGAGTAAGCAAGCGAATAA 59.242 37.500 0.00 0.00 0.00 1.40
147 148 4.320023 TGTTTGGAGTAAGCAAGCGAATA 58.680 39.130 0.00 0.00 0.00 1.75
149 150 2.566913 TGTTTGGAGTAAGCAAGCGAA 58.433 42.857 0.00 0.00 0.00 4.70
150 151 2.248280 TGTTTGGAGTAAGCAAGCGA 57.752 45.000 0.00 0.00 0.00 4.93
151 152 2.921126 CTTGTTTGGAGTAAGCAAGCG 58.079 47.619 3.87 0.00 46.03 4.68
154 155 2.955660 CCCACTTGTTTGGAGTAAGCAA 59.044 45.455 0.00 0.00 39.24 3.91
155 156 2.582052 CCCACTTGTTTGGAGTAAGCA 58.418 47.619 0.00 0.00 39.24 3.91
156 157 1.886542 CCCCACTTGTTTGGAGTAAGC 59.113 52.381 0.00 0.00 39.24 3.09
157 158 3.146847 GACCCCACTTGTTTGGAGTAAG 58.853 50.000 0.00 0.00 39.24 2.34
158 159 2.158579 GGACCCCACTTGTTTGGAGTAA 60.159 50.000 0.00 0.00 39.24 2.24
159 160 1.422402 GGACCCCACTTGTTTGGAGTA 59.578 52.381 0.00 0.00 39.24 2.59
160 161 0.185175 GGACCCCACTTGTTTGGAGT 59.815 55.000 0.00 0.00 39.24 3.85
162 163 2.322772 TGGACCCCACTTGTTTGGA 58.677 52.632 0.00 0.00 39.24 3.53
172 173 4.594970 CACAATAATAAGTGTGGACCCCA 58.405 43.478 0.00 0.00 45.60 4.96
181 182 9.624697 GCTCTCTCTATCTCACAATAATAAGTG 57.375 37.037 0.00 0.00 37.10 3.16
182 183 9.586732 AGCTCTCTCTATCTCACAATAATAAGT 57.413 33.333 0.00 0.00 0.00 2.24
183 184 9.844790 CAGCTCTCTCTATCTCACAATAATAAG 57.155 37.037 0.00 0.00 0.00 1.73
184 185 9.579932 TCAGCTCTCTCTATCTCACAATAATAA 57.420 33.333 0.00 0.00 0.00 1.40
185 186 9.008965 GTCAGCTCTCTCTATCTCACAATAATA 57.991 37.037 0.00 0.00 0.00 0.98
186 187 7.505248 TGTCAGCTCTCTCTATCTCACAATAAT 59.495 37.037 0.00 0.00 0.00 1.28
187 188 6.830838 TGTCAGCTCTCTCTATCTCACAATAA 59.169 38.462 0.00 0.00 0.00 1.40
188 189 6.360618 TGTCAGCTCTCTCTATCTCACAATA 58.639 40.000 0.00 0.00 0.00 1.90
189 190 5.199723 TGTCAGCTCTCTCTATCTCACAAT 58.800 41.667 0.00 0.00 0.00 2.71
191 192 4.227864 TGTCAGCTCTCTCTATCTCACA 57.772 45.455 0.00 0.00 0.00 3.58
193 194 4.579753 CACATGTCAGCTCTCTCTATCTCA 59.420 45.833 0.00 0.00 0.00 3.27
195 196 3.890756 CCACATGTCAGCTCTCTCTATCT 59.109 47.826 0.00 0.00 0.00 1.98
196 197 3.005684 CCCACATGTCAGCTCTCTCTATC 59.994 52.174 0.00 0.00 0.00 2.08
197 198 2.964464 CCCACATGTCAGCTCTCTCTAT 59.036 50.000 0.00 0.00 0.00 1.98
198 199 2.291865 ACCCACATGTCAGCTCTCTCTA 60.292 50.000 0.00 0.00 0.00 2.43
199 200 1.193323 CCCACATGTCAGCTCTCTCT 58.807 55.000 0.00 0.00 0.00 3.10
201 202 2.238084 TACCCACATGTCAGCTCTCT 57.762 50.000 0.00 0.00 0.00 3.10
202 203 3.006323 CCTATACCCACATGTCAGCTCTC 59.994 52.174 0.00 0.00 0.00 3.20
203 204 2.968574 CCTATACCCACATGTCAGCTCT 59.031 50.000 0.00 0.00 0.00 4.09
204 205 2.037772 CCCTATACCCACATGTCAGCTC 59.962 54.545 0.00 0.00 0.00 4.09
205 206 2.050144 CCCTATACCCACATGTCAGCT 58.950 52.381 0.00 0.00 0.00 4.24
206 207 1.768870 ACCCTATACCCACATGTCAGC 59.231 52.381 0.00 0.00 0.00 4.26
207 208 5.825593 ATAACCCTATACCCACATGTCAG 57.174 43.478 0.00 0.00 0.00 3.51
208 209 6.584471 AAATAACCCTATACCCACATGTCA 57.416 37.500 0.00 0.00 0.00 3.58
209 210 7.340999 ACAAAAATAACCCTATACCCACATGTC 59.659 37.037 0.00 0.00 0.00 3.06
211 212 7.340743 TGACAAAAATAACCCTATACCCACATG 59.659 37.037 0.00 0.00 0.00 3.21
212 213 7.415086 TGACAAAAATAACCCTATACCCACAT 58.585 34.615 0.00 0.00 0.00 3.21
213 214 6.791371 TGACAAAAATAACCCTATACCCACA 58.209 36.000 0.00 0.00 0.00 4.17
214 215 7.891498 ATGACAAAAATAACCCTATACCCAC 57.109 36.000 0.00 0.00 0.00 4.61
215 216 9.411189 GTTATGACAAAAATAACCCTATACCCA 57.589 33.333 0.00 0.00 35.40 4.51
222 223 7.453126 TGACCATGTTATGACAAAAATAACCCT 59.547 33.333 0.00 0.00 38.97 4.34
223 224 7.607250 TGACCATGTTATGACAAAAATAACCC 58.393 34.615 0.00 0.00 38.97 4.11
224 225 9.651913 ATTGACCATGTTATGACAAAAATAACC 57.348 29.630 0.00 0.00 38.97 2.85
228 229 8.587608 ACTCATTGACCATGTTATGACAAAAAT 58.412 29.630 0.00 0.00 39.66 1.82
230 231 7.523293 ACTCATTGACCATGTTATGACAAAA 57.477 32.000 0.00 0.00 39.66 2.44
231 232 7.523293 AACTCATTGACCATGTTATGACAAA 57.477 32.000 0.00 0.00 39.66 2.83
232 233 7.230309 TCAAACTCATTGACCATGTTATGACAA 59.770 33.333 0.00 0.00 43.08 3.18
246 247 6.073276 CGTTATTGTCAGGTCAAACTCATTGA 60.073 38.462 0.00 0.00 45.71 2.57
247 248 6.073276 TCGTTATTGTCAGGTCAAACTCATTG 60.073 38.462 0.00 0.00 40.58 2.82
248 249 5.995282 TCGTTATTGTCAGGTCAAACTCATT 59.005 36.000 0.00 0.00 0.00 2.57
249 250 5.547465 TCGTTATTGTCAGGTCAAACTCAT 58.453 37.500 0.00 0.00 0.00 2.90
250 251 4.951254 TCGTTATTGTCAGGTCAAACTCA 58.049 39.130 0.00 0.00 0.00 3.41
251 252 5.408604 ACATCGTTATTGTCAGGTCAAACTC 59.591 40.000 0.00 0.00 0.00 3.01
252 253 5.305585 ACATCGTTATTGTCAGGTCAAACT 58.694 37.500 0.00 0.00 0.00 2.66
254 255 5.408299 CAGACATCGTTATTGTCAGGTCAAA 59.592 40.000 6.59 0.00 44.73 2.69
255 256 4.929211 CAGACATCGTTATTGTCAGGTCAA 59.071 41.667 6.59 0.00 44.73 3.18
257 258 4.744570 TCAGACATCGTTATTGTCAGGTC 58.255 43.478 6.59 0.00 44.73 3.85
258 259 4.801330 TCAGACATCGTTATTGTCAGGT 57.199 40.909 6.59 0.00 44.73 4.00
259 260 4.509230 CCATCAGACATCGTTATTGTCAGG 59.491 45.833 6.59 0.00 44.73 3.86
260 261 4.025396 GCCATCAGACATCGTTATTGTCAG 60.025 45.833 6.59 0.00 44.73 3.51
262 263 3.871006 TGCCATCAGACATCGTTATTGTC 59.129 43.478 0.00 0.00 43.05 3.18
263 264 3.872696 TGCCATCAGACATCGTTATTGT 58.127 40.909 0.00 0.00 0.00 2.71
264 265 5.428496 AATGCCATCAGACATCGTTATTG 57.572 39.130 0.00 0.00 0.00 1.90
265 266 5.589855 TGAAATGCCATCAGACATCGTTATT 59.410 36.000 0.00 0.00 0.00 1.40
266 267 5.125356 TGAAATGCCATCAGACATCGTTAT 58.875 37.500 0.00 0.00 0.00 1.89
268 269 3.346315 TGAAATGCCATCAGACATCGTT 58.654 40.909 0.00 0.00 0.00 3.85
269 270 2.941064 CTGAAATGCCATCAGACATCGT 59.059 45.455 4.91 0.00 45.74 3.73
270 271 3.200483 TCTGAAATGCCATCAGACATCG 58.800 45.455 8.60 0.00 46.23 3.84
272 273 4.498894 TCTCTGAAATGCCATCAGACAT 57.501 40.909 8.60 0.00 46.23 3.06
274 275 5.633830 TTTTCTCTGAAATGCCATCAGAC 57.366 39.130 8.60 0.00 46.23 3.51
276 277 8.167605 AGATATTTTCTCTGAAATGCCATCAG 57.832 34.615 4.58 4.58 44.53 2.90
277 278 9.631257 TTAGATATTTTCTCTGAAATGCCATCA 57.369 29.630 0.00 0.00 35.79 3.07
280 281 8.853126 CCATTAGATATTTTCTCTGAAATGCCA 58.147 33.333 0.00 0.00 35.79 4.92
290 291 8.632679 TGCCATTGTTCCATTAGATATTTTCTC 58.367 33.333 0.00 0.00 35.79 2.87
291 292 8.537728 TGCCATTGTTCCATTAGATATTTTCT 57.462 30.769 0.00 0.00 38.57 2.52
292 293 9.768662 AATGCCATTGTTCCATTAGATATTTTC 57.231 29.630 0.00 0.00 0.00 2.29
296 297 9.550406 CAAAAATGCCATTGTTCCATTAGATAT 57.450 29.630 0.00 0.00 0.00 1.63
298 299 7.622713 TCAAAAATGCCATTGTTCCATTAGAT 58.377 30.769 0.00 0.00 0.00 1.98
299 300 7.002250 TCAAAAATGCCATTGTTCCATTAGA 57.998 32.000 0.00 0.00 0.00 2.10
300 301 7.098477 TCTCAAAAATGCCATTGTTCCATTAG 58.902 34.615 0.00 0.00 0.00 1.73
301 302 7.002250 TCTCAAAAATGCCATTGTTCCATTA 57.998 32.000 0.00 0.00 0.00 1.90
302 303 5.867330 TCTCAAAAATGCCATTGTTCCATT 58.133 33.333 0.00 0.00 0.00 3.16
303 304 5.486735 TCTCAAAAATGCCATTGTTCCAT 57.513 34.783 0.00 0.00 0.00 3.41
305 306 6.038050 TGTTTTCTCAAAAATGCCATTGTTCC 59.962 34.615 0.00 0.00 36.77 3.62
306 307 7.014092 TGTTTTCTCAAAAATGCCATTGTTC 57.986 32.000 0.00 0.00 36.77 3.18
307 308 6.998968 TGTTTTCTCAAAAATGCCATTGTT 57.001 29.167 0.00 0.00 36.77 2.83
309 310 7.429636 AGATGTTTTCTCAAAAATGCCATTG 57.570 32.000 0.00 0.00 36.77 2.82
310 311 8.992073 GTAAGATGTTTTCTCAAAAATGCCATT 58.008 29.630 0.00 0.00 36.77 3.16
311 312 7.329226 CGTAAGATGTTTTCTCAAAAATGCCAT 59.671 33.333 0.00 0.00 36.65 4.40
312 313 6.640499 CGTAAGATGTTTTCTCAAAAATGCCA 59.360 34.615 0.00 0.00 36.65 4.92
313 314 6.089417 CCGTAAGATGTTTTCTCAAAAATGCC 59.911 38.462 0.00 0.00 36.65 4.40
314 315 6.861055 TCCGTAAGATGTTTTCTCAAAAATGC 59.139 34.615 0.00 0.00 36.65 3.56
315 316 7.061094 GCTCCGTAAGATGTTTTCTCAAAAATG 59.939 37.037 0.00 0.00 36.65 2.32
316 317 7.084486 GCTCCGTAAGATGTTTTCTCAAAAAT 58.916 34.615 0.00 0.00 36.65 1.82
317 318 6.435428 GCTCCGTAAGATGTTTTCTCAAAAA 58.565 36.000 0.00 0.00 43.02 1.94
318 319 5.333798 CGCTCCGTAAGATGTTTTCTCAAAA 60.334 40.000 0.00 0.00 43.02 2.44
319 320 4.151689 CGCTCCGTAAGATGTTTTCTCAAA 59.848 41.667 0.00 0.00 43.02 2.69
320 321 3.678072 CGCTCCGTAAGATGTTTTCTCAA 59.322 43.478 0.00 0.00 43.02 3.02
321 322 3.057104 TCGCTCCGTAAGATGTTTTCTCA 60.057 43.478 0.00 0.00 43.02 3.27
322 323 3.508762 TCGCTCCGTAAGATGTTTTCTC 58.491 45.455 0.00 0.00 43.02 2.87
323 324 3.587797 TCGCTCCGTAAGATGTTTTCT 57.412 42.857 0.00 0.00 43.02 2.52
324 325 3.001330 CCATCGCTCCGTAAGATGTTTTC 59.999 47.826 4.33 0.00 39.89 2.29
325 326 2.936498 CCATCGCTCCGTAAGATGTTTT 59.064 45.455 4.33 0.00 39.89 2.43
326 327 2.550978 CCATCGCTCCGTAAGATGTTT 58.449 47.619 4.33 0.00 39.89 2.83
327 328 1.806623 GCCATCGCTCCGTAAGATGTT 60.807 52.381 4.33 0.00 39.89 2.71
330 331 0.681733 ATGCCATCGCTCCGTAAGAT 59.318 50.000 0.00 0.00 35.69 2.40
331 332 0.464036 AATGCCATCGCTCCGTAAGA 59.536 50.000 0.00 0.00 35.69 2.10
333 334 1.745232 AAAATGCCATCGCTCCGTAA 58.255 45.000 0.00 0.00 35.36 3.18
334 335 1.400142 CAAAAATGCCATCGCTCCGTA 59.600 47.619 0.00 0.00 35.36 4.02
335 336 0.171007 CAAAAATGCCATCGCTCCGT 59.829 50.000 0.00 0.00 35.36 4.69
338 339 1.135315 TGCTCAAAAATGCCATCGCTC 60.135 47.619 0.00 0.00 35.36 5.03
339 340 0.889994 TGCTCAAAAATGCCATCGCT 59.110 45.000 0.00 0.00 35.36 4.93
341 342 2.642139 ACTGCTCAAAAATGCCATCG 57.358 45.000 0.00 0.00 0.00 3.84
343 344 3.756933 ACAACTGCTCAAAAATGCCAT 57.243 38.095 0.00 0.00 0.00 4.40
344 345 4.662468 TTACAACTGCTCAAAAATGCCA 57.338 36.364 0.00 0.00 0.00 4.92
350 351 9.677567 GTCATTAGAAATTACAACTGCTCAAAA 57.322 29.630 0.00 0.00 0.00 2.44
351 352 8.845227 TGTCATTAGAAATTACAACTGCTCAAA 58.155 29.630 0.00 0.00 0.00 2.69
353 354 7.977789 TGTCATTAGAAATTACAACTGCTCA 57.022 32.000 0.00 0.00 0.00 4.26
354 355 9.677567 TTTTGTCATTAGAAATTACAACTGCTC 57.322 29.630 0.19 0.00 30.28 4.26
355 356 9.463443 GTTTTGTCATTAGAAATTACAACTGCT 57.537 29.630 0.19 0.00 30.28 4.24
365 366 9.778741 TCACTACTCAGTTTTGTCATTAGAAAT 57.221 29.630 0.00 0.00 30.46 2.17
366 367 9.261180 CTCACTACTCAGTTTTGTCATTAGAAA 57.739 33.333 0.00 0.00 30.46 2.52
367 368 8.638873 TCTCACTACTCAGTTTTGTCATTAGAA 58.361 33.333 0.00 0.00 30.46 2.10
368 369 8.082852 GTCTCACTACTCAGTTTTGTCATTAGA 58.917 37.037 0.00 0.00 30.46 2.10
370 371 7.652105 GTGTCTCACTACTCAGTTTTGTCATTA 59.348 37.037 0.00 0.00 30.46 1.90
371 372 6.480320 GTGTCTCACTACTCAGTTTTGTCATT 59.520 38.462 0.00 0.00 30.46 2.57
372 373 5.986135 GTGTCTCACTACTCAGTTTTGTCAT 59.014 40.000 0.00 0.00 30.46 3.06
373 374 5.105513 TGTGTCTCACTACTCAGTTTTGTCA 60.106 40.000 1.72 0.00 35.11 3.58
374 375 5.348986 TGTGTCTCACTACTCAGTTTTGTC 58.651 41.667 1.72 0.00 35.11 3.18
377 378 5.978814 AGTTGTGTCTCACTACTCAGTTTT 58.021 37.500 10.15 0.00 44.27 2.43
378 379 5.599999 AGTTGTGTCTCACTACTCAGTTT 57.400 39.130 10.15 0.00 44.27 2.66
379 380 5.828859 ACTAGTTGTGTCTCACTACTCAGTT 59.171 40.000 16.88 1.09 44.27 3.16
380 381 5.239744 CACTAGTTGTGTCTCACTACTCAGT 59.760 44.000 16.88 15.07 44.27 3.41
381 382 5.335269 CCACTAGTTGTGTCTCACTACTCAG 60.335 48.000 16.88 14.63 44.27 3.35
382 383 4.519350 CCACTAGTTGTGTCTCACTACTCA 59.481 45.833 16.88 6.78 44.27 3.41
383 384 4.616373 GCCACTAGTTGTGTCTCACTACTC 60.616 50.000 16.88 3.44 44.27 2.59
385 386 3.005472 TGCCACTAGTTGTGTCTCACTAC 59.995 47.826 4.03 6.41 44.81 2.73
387 388 2.039418 TGCCACTAGTTGTGTCTCACT 58.961 47.619 4.03 0.00 44.81 3.41
389 390 4.882842 TTATGCCACTAGTTGTGTCTCA 57.117 40.909 4.03 0.08 44.81 3.27
391 392 5.804639 TCATTTATGCCACTAGTTGTGTCT 58.195 37.500 4.03 0.00 44.81 3.41
392 393 6.683974 ATCATTTATGCCACTAGTTGTGTC 57.316 37.500 4.03 0.00 44.81 3.67
393 394 8.574251 TTTATCATTTATGCCACTAGTTGTGT 57.426 30.769 4.03 0.00 44.81 3.72
394 395 9.853555 TTTTTATCATTTATGCCACTAGTTGTG 57.146 29.630 0.00 0.00 45.80 3.33
395 396 9.855021 GTTTTTATCATTTATGCCACTAGTTGT 57.145 29.630 0.00 0.00 0.00 3.32
396 397 9.301153 GGTTTTTATCATTTATGCCACTAGTTG 57.699 33.333 0.00 0.00 0.00 3.16
397 398 8.474831 GGGTTTTTATCATTTATGCCACTAGTT 58.525 33.333 0.00 0.00 0.00 2.24
398 399 7.839200 AGGGTTTTTATCATTTATGCCACTAGT 59.161 33.333 0.00 0.00 0.00 2.57
399 400 8.237811 AGGGTTTTTATCATTTATGCCACTAG 57.762 34.615 0.00 0.00 0.00 2.57
401 402 7.494922 AAGGGTTTTTATCATTTATGCCACT 57.505 32.000 0.00 0.00 0.00 4.00
402 403 8.560355 AAAAGGGTTTTTATCATTTATGCCAC 57.440 30.769 0.00 0.00 34.81 5.01
403 404 7.547370 CGAAAAGGGTTTTTATCATTTATGCCA 59.453 33.333 0.00 0.00 36.66 4.92
432 433 8.650143 AATATCCACATACCACTTGACTTTTT 57.350 30.769 0.00 0.00 0.00 1.94
434 435 8.650143 AAAATATCCACATACCACTTGACTTT 57.350 30.769 0.00 0.00 0.00 2.66
435 436 8.650143 AAAAATATCCACATACCACTTGACTT 57.350 30.769 0.00 0.00 0.00 3.01
472 473 8.373256 CGGAAGTTTGAAGAAAAGAAAAGAAAC 58.627 33.333 0.00 0.00 0.00 2.78
475 476 7.153217 ACGGAAGTTTGAAGAAAAGAAAAGA 57.847 32.000 0.00 0.00 46.40 2.52
498 499 5.579119 ACCACGAACCTTCAATTTTTCAAAC 59.421 36.000 0.00 0.00 0.00 2.93
501 502 4.399618 TCACCACGAACCTTCAATTTTTCA 59.600 37.500 0.00 0.00 0.00 2.69
502 503 4.927422 TCACCACGAACCTTCAATTTTTC 58.073 39.130 0.00 0.00 0.00 2.29
503 504 4.993029 TCACCACGAACCTTCAATTTTT 57.007 36.364 0.00 0.00 0.00 1.94
508 509 2.920724 TGATCACCACGAACCTTCAA 57.079 45.000 0.00 0.00 0.00 2.69
540 541 3.152341 GCCAATATGGTGAGGAGGAATG 58.848 50.000 0.00 0.00 40.46 2.67
551 552 5.011943 ACAAACAAAGACATGCCAATATGGT 59.988 36.000 0.00 0.00 40.46 3.55
560 561 7.532682 TTTCCTAAAACAAACAAAGACATGC 57.467 32.000 0.00 0.00 0.00 4.06
563 564 9.672086 CGATATTTCCTAAAACAAACAAAGACA 57.328 29.630 0.00 0.00 0.00 3.41
585 586 9.999660 TGTATTGGTTATATAAACTTGGCGATA 57.000 29.630 11.71 0.00 0.00 2.92
603 604 9.582874 TTACCATAAGGGGATATATGTATTGGT 57.417 33.333 5.43 5.43 42.91 3.67
617 806 7.552459 CAGGTGTTAATTTTTACCATAAGGGG 58.448 38.462 0.00 0.00 42.91 4.79
637 826 1.635663 CGTTTTCGCCCTAGCAGGTG 61.636 60.000 2.18 0.00 39.83 4.00
669 2230 9.209175 CCTAACAAAACTATGATGGTATAGAGC 57.791 37.037 0.00 0.00 35.20 4.09
690 2251 7.656707 TGTGGTTACGTCTTAATTTCCTAAC 57.343 36.000 0.00 0.00 0.00 2.34
702 2263 4.202245 ACTTATGCATGTGGTTACGTCT 57.798 40.909 10.16 0.00 0.00 4.18
704 2265 4.320023 TGAACTTATGCATGTGGTTACGT 58.680 39.130 10.16 0.00 0.00 3.57
706 2267 7.938563 TTTTTGAACTTATGCATGTGGTTAC 57.061 32.000 10.16 6.61 0.00 2.50
731 2292 4.518970 AGATGCATGTGGTTACGTCTTTTT 59.481 37.500 2.46 0.00 0.00 1.94
733 2294 3.674997 AGATGCATGTGGTTACGTCTTT 58.325 40.909 2.46 0.00 0.00 2.52
756 2317 1.063972 GCACACGCACAGCTTTTGA 59.936 52.632 0.00 0.00 38.36 2.69
769 2330 1.932564 GAAACACGCACACGCACAC 60.933 57.895 0.00 0.00 45.53 3.82
801 2362 9.391006 ACAACCTTTTATCTATCGCTTTTATGA 57.609 29.630 0.00 0.00 0.00 2.15
810 2371 4.328983 ACACGCACAACCTTTTATCTATCG 59.671 41.667 0.00 0.00 0.00 2.92
892 2453 9.925268 CCGTATTAATACAACTGTTTTATGACC 57.075 33.333 22.27 0.00 32.87 4.02
1116 3797 0.327576 TCCAGAAATCCCCTCCTCCC 60.328 60.000 0.00 0.00 0.00 4.30
1279 4346 4.379243 ACCTTCTCCCTGCACGCG 62.379 66.667 3.53 3.53 0.00 6.01
1299 4366 1.827394 CCTTTCTCCGCCGGGATAA 59.173 57.895 1.90 0.00 42.83 1.75
1300 4367 2.803817 GCCTTTCTCCGCCGGGATA 61.804 63.158 1.90 0.00 42.83 2.59
1308 4375 1.936547 GCAAGATGTAGCCTTTCTCCG 59.063 52.381 0.00 0.00 0.00 4.63
1347 4414 4.226761 GTTGAAATTGATGTCCGTGTTCC 58.773 43.478 0.00 0.00 0.00 3.62
1421 4501 2.032681 GGTGAAGGTGGCGCTCTT 59.967 61.111 7.64 9.15 0.00 2.85
1453 4533 0.035915 TGATGTTCCGGGCGATGAAA 60.036 50.000 0.00 0.00 0.00 2.69
1606 4686 4.335647 CTGAAGTGGTGGCGGCCT 62.336 66.667 21.46 0.00 0.00 5.19
1903 4986 1.075748 GGCTTTCCATGCCTCCCAT 60.076 57.895 0.00 0.00 46.38 4.00
2021 5104 0.969894 ACGAACTTCTCCACCTCCAG 59.030 55.000 0.00 0.00 0.00 3.86
2102 5188 3.502595 GTGAGTTGTAGAAAAGAAGGCCC 59.497 47.826 0.00 0.00 0.00 5.80
2115 5201 2.368548 ACACATGCAGGAGTGAGTTGTA 59.631 45.455 19.64 0.00 39.03 2.41
2130 5216 1.174078 TCCAGCCACTTGCACACATG 61.174 55.000 0.00 0.00 44.83 3.21
2135 5221 0.746659 ACTTTTCCAGCCACTTGCAC 59.253 50.000 0.00 0.00 44.83 4.57
2137 5223 0.598419 GCACTTTTCCAGCCACTTGC 60.598 55.000 0.00 0.00 41.71 4.01
2138 5224 1.000938 GAGCACTTTTCCAGCCACTTG 60.001 52.381 0.00 0.00 0.00 3.16
2139 5225 1.322442 GAGCACTTTTCCAGCCACTT 58.678 50.000 0.00 0.00 0.00 3.16
2159 5291 8.600625 GGTGTTACAAAGTTTTCCTTTTTGATC 58.399 33.333 3.49 0.00 41.51 2.92
2160 5292 8.097662 TGGTGTTACAAAGTTTTCCTTTTTGAT 58.902 29.630 3.49 0.00 41.51 2.57
2161 5293 7.442656 TGGTGTTACAAAGTTTTCCTTTTTGA 58.557 30.769 3.49 0.00 41.51 2.69
2162 5294 7.659652 TGGTGTTACAAAGTTTTCCTTTTTG 57.340 32.000 0.00 0.00 41.51 2.44
2163 5295 8.856153 ATTGGTGTTACAAAGTTTTCCTTTTT 57.144 26.923 0.00 0.00 41.51 1.94
2219 5351 9.461312 TTGTATGTTTTCCTAAATACAGATGCT 57.539 29.630 0.00 0.00 0.00 3.79
2245 5377 7.372451 TGTTTTTGCTTGCGTCTATATACTT 57.628 32.000 0.00 0.00 0.00 2.24
2255 5412 2.645730 TGAGTTGTTTTTGCTTGCGT 57.354 40.000 0.00 0.00 0.00 5.24
2261 5418 7.865385 TGGAACAATAGTATGAGTTGTTTTTGC 59.135 33.333 6.09 0.00 43.74 3.68
2289 5446 3.326733 TTCGATGACGTTTTGTTGGTG 57.673 42.857 0.00 0.00 40.69 4.17
2290 5447 4.533222 GATTTCGATGACGTTTTGTTGGT 58.467 39.130 0.00 0.00 40.69 3.67
2291 5448 3.911964 GGATTTCGATGACGTTTTGTTGG 59.088 43.478 0.00 0.00 40.69 3.77
2292 5449 4.532276 TGGATTTCGATGACGTTTTGTTG 58.468 39.130 0.00 0.00 40.69 3.33
2337 5496 3.070018 AGTGTGACAGAAATGCTACAGC 58.930 45.455 0.00 0.00 42.50 4.40
2340 5499 7.348201 GCATTATAGTGTGACAGAAATGCTAC 58.652 38.462 18.76 0.00 42.61 3.58
2403 5562 6.452757 ACCCCTGAAAAATCAATTCCAAAT 57.547 33.333 0.00 0.00 0.00 2.32
2413 5572 5.017294 TGTGACAAAACCCCTGAAAAATC 57.983 39.130 0.00 0.00 0.00 2.17
2415 5574 4.223923 ACATGTGACAAAACCCCTGAAAAA 59.776 37.500 0.00 0.00 0.00 1.94
2416 5575 3.772025 ACATGTGACAAAACCCCTGAAAA 59.228 39.130 0.00 0.00 0.00 2.29
2420 5579 2.586425 AGACATGTGACAAAACCCCTG 58.414 47.619 1.15 0.00 0.00 4.45
2421 5580 3.312736 AAGACATGTGACAAAACCCCT 57.687 42.857 1.15 0.00 0.00 4.79
2548 5709 1.691434 CATACTGGCCTCTCTCTTCCC 59.309 57.143 3.32 0.00 0.00 3.97
2561 5722 7.870954 TGAGTGTAAACTTGTAACTCATACTGG 59.129 37.037 0.00 0.00 41.63 4.00
2641 5802 4.985538 TTTAAACACATGAACGGGTTGT 57.014 36.364 0.00 0.00 0.00 3.32
2893 7162 1.745489 GTTCGGCTGATGGTGGTCC 60.745 63.158 0.00 0.00 0.00 4.46
2896 7165 0.249120 TGTAGTTCGGCTGATGGTGG 59.751 55.000 0.00 0.00 0.00 4.61
2918 7187 2.621338 GAGTTGAGACATGCCGATGAA 58.379 47.619 0.00 0.00 33.36 2.57
2962 7231 2.854076 CCTTGAAGGGCCCAACCT 59.146 61.111 27.56 4.70 44.56 3.50
2963 7232 2.997315 GCCTTGAAGGGCCCAACC 60.997 66.667 27.56 13.05 45.92 3.77
2970 7239 2.016096 GCTCTAGCTTGCCTTGAAGGG 61.016 57.143 13.99 0.00 35.27 3.95
2971 7240 1.339438 TGCTCTAGCTTGCCTTGAAGG 60.339 52.381 6.92 6.92 42.66 3.46
2972 7241 2.105006 TGCTCTAGCTTGCCTTGAAG 57.895 50.000 3.26 0.00 42.66 3.02
2975 7244 3.539604 AGTTATGCTCTAGCTTGCCTTG 58.460 45.455 3.26 0.00 42.66 3.61
2977 7246 3.706594 TGTAGTTATGCTCTAGCTTGCCT 59.293 43.478 3.26 1.01 42.66 4.75
2978 7247 3.804873 GTGTAGTTATGCTCTAGCTTGCC 59.195 47.826 3.26 0.00 42.66 4.52
2979 7248 3.487574 CGTGTAGTTATGCTCTAGCTTGC 59.512 47.826 3.26 0.00 42.66 4.01
2980 7249 4.500837 CACGTGTAGTTATGCTCTAGCTTG 59.499 45.833 7.58 0.00 42.66 4.01
2981 7250 4.440250 CCACGTGTAGTTATGCTCTAGCTT 60.440 45.833 15.65 0.00 42.66 3.74
2983 7252 3.372954 CCACGTGTAGTTATGCTCTAGC 58.627 50.000 15.65 0.00 42.50 3.42
2984 7253 3.181490 TGCCACGTGTAGTTATGCTCTAG 60.181 47.826 15.65 0.00 0.00 2.43
2986 7255 1.548719 TGCCACGTGTAGTTATGCTCT 59.451 47.619 15.65 0.00 0.00 4.09
2987 7256 2.004583 TGCCACGTGTAGTTATGCTC 57.995 50.000 15.65 0.00 0.00 4.26
2988 7257 2.346803 CTTGCCACGTGTAGTTATGCT 58.653 47.619 15.65 0.00 0.00 3.79
2989 7258 1.396996 CCTTGCCACGTGTAGTTATGC 59.603 52.381 15.65 9.24 0.00 3.14
2990 7259 2.006888 CCCTTGCCACGTGTAGTTATG 58.993 52.381 15.65 0.00 0.00 1.90
2993 7262 0.470766 TTCCCTTGCCACGTGTAGTT 59.529 50.000 15.65 0.00 0.00 2.24
2994 7263 0.034896 CTTCCCTTGCCACGTGTAGT 59.965 55.000 15.65 0.00 0.00 2.73
2995 7264 0.673644 CCTTCCCTTGCCACGTGTAG 60.674 60.000 15.65 8.56 0.00 2.74
2996 7265 1.373435 CCTTCCCTTGCCACGTGTA 59.627 57.895 15.65 0.00 0.00 2.90
2998 7267 2.672996 CCCTTCCCTTGCCACGTG 60.673 66.667 9.08 9.08 0.00 4.49
3001 7270 4.344865 TCGCCCTTCCCTTGCCAC 62.345 66.667 0.00 0.00 0.00 5.01
3002 7271 4.033776 CTCGCCCTTCCCTTGCCA 62.034 66.667 0.00 0.00 0.00 4.92
3003 7272 1.984288 ATACTCGCCCTTCCCTTGCC 61.984 60.000 0.00 0.00 0.00 4.52
3004 7273 0.756903 TATACTCGCCCTTCCCTTGC 59.243 55.000 0.00 0.00 0.00 4.01
3005 7274 2.028020 GGATATACTCGCCCTTCCCTTG 60.028 54.545 0.00 0.00 0.00 3.61
3032 7312 5.559608 CAGCATGATAATGGAACAAGCGTAG 60.560 44.000 0.00 0.00 40.75 3.51
3054 7334 2.500098 TGAAAGACGGGTTCCCTATCAG 59.500 50.000 6.31 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.