Multiple sequence alignment - TraesCS2D01G120000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G120000 chr2D 100.000 8946 0 0 1 8946 69268283 69277228 0.000000e+00 16521.0
1 TraesCS2D01G120000 chr2D 97.945 5451 104 4 1534 6983 645845950 645851393 0.000000e+00 9439.0
2 TraesCS2D01G120000 chr2D 97.396 5453 111 8 1533 6983 573264936 573270359 0.000000e+00 9254.0
3 TraesCS2D01G120000 chr2D 97.598 5413 105 5 1590 6983 631551053 631556459 0.000000e+00 9252.0
4 TraesCS2D01G120000 chr2D 97.945 4963 96 2 2023 6984 592281545 592276588 0.000000e+00 8595.0
5 TraesCS2D01G120000 chr2D 97.822 4959 105 3 2026 6983 591546854 591541898 0.000000e+00 8556.0
6 TraesCS2D01G120000 chr2D 97.575 4165 69 6 1534 5691 314817933 314813794 0.000000e+00 7103.0
7 TraesCS2D01G120000 chr2D 87.639 898 80 12 8008 8895 107527588 107526712 0.000000e+00 1014.0
8 TraesCS2D01G120000 chr2D 86.145 895 101 13 8006 8893 112553427 112554305 0.000000e+00 944.0
9 TraesCS2D01G120000 chr2D 79.401 267 45 7 284 541 78512712 78512447 7.140000e-41 180.0
10 TraesCS2D01G120000 chr7D 98.257 5451 90 2 1534 6983 469895958 469890512 0.000000e+00 9535.0
11 TraesCS2D01G120000 chr7D 85.761 927 112 14 8008 8920 593540254 593539334 0.000000e+00 963.0
12 TraesCS2D01G120000 chr7D 73.059 631 140 27 7304 7919 379091139 379091754 7.090000e-46 196.0
13 TraesCS2D01G120000 chr7D 91.892 74 6 0 564 637 169588123 169588050 4.420000e-18 104.0
14 TraesCS2D01G120000 chr3D 98.066 4963 91 3 2022 6983 402355191 402350233 0.000000e+00 8628.0
15 TraesCS2D01G120000 chr3D 88.815 903 85 11 8004 8895 182327391 182326494 0.000000e+00 1094.0
16 TraesCS2D01G120000 chr3D 91.379 58 5 0 288 345 570469656 570469599 7.450000e-11 80.5
17 TraesCS2D01G120000 chr5D 98.065 4962 89 4 2023 6983 279154631 279149676 0.000000e+00 8624.0
18 TraesCS2D01G120000 chr5D 87.111 900 103 11 8006 8896 438181735 438180840 0.000000e+00 1007.0
19 TraesCS2D01G120000 chr5D 97.113 381 11 0 1529 1909 441909174 441909554 2.110000e-180 643.0
20 TraesCS2D01G120000 chr5D 97.347 377 10 0 1533 1909 280546838 280546462 7.570000e-180 641.0
21 TraesCS2D01G120000 chr4D 98.044 4960 88 5 2026 6984 397101753 397106704 0.000000e+00 8613.0
22 TraesCS2D01G120000 chr7B 93.407 1820 91 18 1534 3326 639506994 639508811 0.000000e+00 2669.0
23 TraesCS2D01G120000 chr7B 73.059 631 140 26 7304 7919 374529912 374530527 7.090000e-46 196.0
24 TraesCS2D01G120000 chr2B 95.805 1025 43 0 6984 8008 105895958 105896982 0.000000e+00 1655.0
25 TraesCS2D01G120000 chr2B 85.432 961 116 18 8006 8946 153215259 153216215 0.000000e+00 977.0
26 TraesCS2D01G120000 chr2B 96.034 580 20 1 958 1534 105895384 105895963 0.000000e+00 941.0
27 TraesCS2D01G120000 chr2B 86.885 61 6 2 284 343 24122231 24122172 5.800000e-07 67.6
28 TraesCS2D01G120000 chr2A 93.969 1028 40 5 6984 8011 69314004 69315009 0.000000e+00 1535.0
29 TraesCS2D01G120000 chr2A 95.356 689 32 0 846 1534 69313321 69314009 0.000000e+00 1096.0
30 TraesCS2D01G120000 chr2A 89.265 680 55 12 176 839 69312473 69313150 0.000000e+00 835.0
31 TraesCS2D01G120000 chr2A 95.011 441 22 0 1534 1974 744901969 744901529 0.000000e+00 693.0
32 TraesCS2D01G120000 chr2A 97.080 137 4 0 3 139 69312338 69312474 1.940000e-56 231.0
33 TraesCS2D01G120000 chr2A 72.742 609 136 27 7304 7897 338546626 338547219 2.570000e-40 178.0
34 TraesCS2D01G120000 chr2A 97.619 42 1 0 728 769 686615851 686615810 1.250000e-08 73.1
35 TraesCS2D01G120000 chr1D 87.236 948 94 12 8008 8946 417249906 417248977 0.000000e+00 1055.0
36 TraesCS2D01G120000 chr1D 88.206 797 85 5 8131 8922 362783831 362783039 0.000000e+00 942.0
37 TraesCS2D01G120000 chr3A 83.961 929 120 22 8012 8920 721294411 721293492 0.000000e+00 863.0
38 TraesCS2D01G120000 chr3A 79.425 904 135 32 8003 8892 86712342 86713208 7.730000e-165 592.0
39 TraesCS2D01G120000 chr1A 82.268 970 159 6 6992 7952 545418134 545417169 0.000000e+00 826.0
40 TraesCS2D01G120000 chr1A 90.476 42 4 0 577 618 431947386 431947427 1.000000e-03 56.5
41 TraesCS2D01G120000 chr6D 82.049 947 162 7 6985 7929 157451580 157450640 0.000000e+00 800.0
42 TraesCS2D01G120000 chr6D 97.606 376 9 0 1534 1909 417474364 417474739 0.000000e+00 645.0
43 TraesCS2D01G120000 chr6D 94.595 37 2 0 604 640 101787758 101787722 3.490000e-04 58.4
44 TraesCS2D01G120000 chr5A 79.487 897 148 28 8008 8885 681508627 681509506 9.930000e-169 604.0
45 TraesCS2D01G120000 chr5A 78.243 239 40 6 564 791 592056359 592056122 9.360000e-30 143.0
46 TraesCS2D01G120000 chr5A 78.243 239 40 6 564 791 592057132 592056895 9.360000e-30 143.0
47 TraesCS2D01G120000 chr6B 81.532 509 90 4 7423 7929 280999281 280998775 5.000000e-112 416.0
48 TraesCS2D01G120000 chr6B 80.106 377 72 2 7044 7420 281005343 281004970 2.460000e-70 278.0
49 TraesCS2D01G120000 chr7A 73.016 630 142 24 7304 7919 427557897 427558512 7.090000e-46 196.0
50 TraesCS2D01G120000 chr7A 79.646 113 19 4 7734 7844 108502586 108502476 2.680000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G120000 chr2D 69268283 69277228 8945 False 16521.00 16521 100.0000 1 8946 1 chr2D.!!$F1 8945
1 TraesCS2D01G120000 chr2D 645845950 645851393 5443 False 9439.00 9439 97.9450 1534 6983 1 chr2D.!!$F5 5449
2 TraesCS2D01G120000 chr2D 573264936 573270359 5423 False 9254.00 9254 97.3960 1533 6983 1 chr2D.!!$F3 5450
3 TraesCS2D01G120000 chr2D 631551053 631556459 5406 False 9252.00 9252 97.5980 1590 6983 1 chr2D.!!$F4 5393
4 TraesCS2D01G120000 chr2D 592276588 592281545 4957 True 8595.00 8595 97.9450 2023 6984 1 chr2D.!!$R5 4961
5 TraesCS2D01G120000 chr2D 591541898 591546854 4956 True 8556.00 8556 97.8220 2026 6983 1 chr2D.!!$R4 4957
6 TraesCS2D01G120000 chr2D 314813794 314817933 4139 True 7103.00 7103 97.5750 1534 5691 1 chr2D.!!$R3 4157
7 TraesCS2D01G120000 chr2D 107526712 107527588 876 True 1014.00 1014 87.6390 8008 8895 1 chr2D.!!$R2 887
8 TraesCS2D01G120000 chr2D 112553427 112554305 878 False 944.00 944 86.1450 8006 8893 1 chr2D.!!$F2 887
9 TraesCS2D01G120000 chr7D 469890512 469895958 5446 True 9535.00 9535 98.2570 1534 6983 1 chr7D.!!$R2 5449
10 TraesCS2D01G120000 chr7D 593539334 593540254 920 True 963.00 963 85.7610 8008 8920 1 chr7D.!!$R3 912
11 TraesCS2D01G120000 chr3D 402350233 402355191 4958 True 8628.00 8628 98.0660 2022 6983 1 chr3D.!!$R2 4961
12 TraesCS2D01G120000 chr3D 182326494 182327391 897 True 1094.00 1094 88.8150 8004 8895 1 chr3D.!!$R1 891
13 TraesCS2D01G120000 chr5D 279149676 279154631 4955 True 8624.00 8624 98.0650 2023 6983 1 chr5D.!!$R1 4960
14 TraesCS2D01G120000 chr5D 438180840 438181735 895 True 1007.00 1007 87.1110 8006 8896 1 chr5D.!!$R3 890
15 TraesCS2D01G120000 chr4D 397101753 397106704 4951 False 8613.00 8613 98.0440 2026 6984 1 chr4D.!!$F1 4958
16 TraesCS2D01G120000 chr7B 639506994 639508811 1817 False 2669.00 2669 93.4070 1534 3326 1 chr7B.!!$F2 1792
17 TraesCS2D01G120000 chr2B 105895384 105896982 1598 False 1298.00 1655 95.9195 958 8008 2 chr2B.!!$F2 7050
18 TraesCS2D01G120000 chr2B 153215259 153216215 956 False 977.00 977 85.4320 8006 8946 1 chr2B.!!$F1 940
19 TraesCS2D01G120000 chr2A 69312338 69315009 2671 False 924.25 1535 93.9175 3 8011 4 chr2A.!!$F2 8008
20 TraesCS2D01G120000 chr1D 417248977 417249906 929 True 1055.00 1055 87.2360 8008 8946 1 chr1D.!!$R2 938
21 TraesCS2D01G120000 chr1D 362783039 362783831 792 True 942.00 942 88.2060 8131 8922 1 chr1D.!!$R1 791
22 TraesCS2D01G120000 chr3A 721293492 721294411 919 True 863.00 863 83.9610 8012 8920 1 chr3A.!!$R1 908
23 TraesCS2D01G120000 chr3A 86712342 86713208 866 False 592.00 592 79.4250 8003 8892 1 chr3A.!!$F1 889
24 TraesCS2D01G120000 chr1A 545417169 545418134 965 True 826.00 826 82.2680 6992 7952 1 chr1A.!!$R1 960
25 TraesCS2D01G120000 chr6D 157450640 157451580 940 True 800.00 800 82.0490 6985 7929 1 chr6D.!!$R2 944
26 TraesCS2D01G120000 chr5A 681508627 681509506 879 False 604.00 604 79.4870 8008 8885 1 chr5A.!!$F1 877
27 TraesCS2D01G120000 chr6B 280998775 280999281 506 True 416.00 416 81.5320 7423 7929 1 chr6B.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 402 0.108377 ATTTTCGCGGCAAAATCCCC 60.108 50.000 6.13 0.00 31.53 4.81 F
766 782 0.252881 AGGATGAGTTGGAGAGGGCA 60.253 55.000 0.00 0.00 0.00 5.36 F
842 858 0.620556 ATGGAGGCTCGGATTGTTGT 59.379 50.000 8.69 0.00 0.00 3.32 F
882 1062 0.677414 TTAAATGACCGGTTCCCGCC 60.677 55.000 9.42 0.00 46.86 6.13 F
1935 2145 1.003866 GAAATCCATCGCTTGCGTACC 60.004 52.381 14.70 0.00 0.00 3.34 F
2453 2705 1.119574 ACAACTACCTCCTGTGGCGT 61.120 55.000 0.00 0.00 0.00 5.68 F
4277 4547 1.610522 GACACTTCTTGCACATGCCTT 59.389 47.619 0.49 0.00 41.18 4.35 F
5288 5558 0.763652 CATGCTGAGGCTGACCCTAT 59.236 55.000 0.00 0.00 46.60 2.57 F
5626 5896 2.238245 GCTTCGACAGCTTGATGTTG 57.762 50.000 10.97 0.18 46.27 3.33 F
7627 7934 0.179100 AGGTGAACATCCTGATCGCG 60.179 55.000 0.00 0.00 31.52 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2145 1.452651 AATCCTGCATGGGAGCACG 60.453 57.895 0.80 0.0 40.11 5.34 R
2754 3008 0.687354 TTCTTGACCTCACCCAGCTC 59.313 55.000 0.00 0.0 0.00 4.09 R
2815 3069 3.064207 GACGACAGTGTATCAGCCAAAA 58.936 45.455 0.00 0.0 0.00 2.44 R
3140 3401 3.356639 CTCGCAGTGGAGCCGCTTA 62.357 63.158 0.00 0.0 34.14 3.09 R
4126 4396 1.785647 AGGTTACGATACTCACCCCC 58.214 55.000 0.00 0.0 0.00 5.40 R
4643 4913 3.897239 TCAGGCAAAACTGGAAAAGAGA 58.103 40.909 0.00 0.0 38.98 3.10 R
6341 6611 1.005037 ATCAGTCCAGAACGCGCAA 60.005 52.632 5.73 0.0 0.00 4.85 R
6364 6634 2.358957 CCAGTCGGCATCAGAAAATGA 58.641 47.619 0.00 0.0 43.70 2.57 R
7718 8025 0.688087 ATCTCCTTCCTCCCGGTGAC 60.688 60.000 0.00 0.0 0.00 3.67 R
8806 9167 1.403780 GGTATCGAGCCACACGTCTTT 60.404 52.381 4.16 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.023575 CGGCATTAGGCTATACAATGAATTTC 58.976 38.462 11.04 0.00 44.01 2.17
100 101 7.998964 ACCCATCTACCAAATATGAGTTTAAGG 59.001 37.037 0.00 0.00 0.00 2.69
171 172 8.691661 ATATAATTGCACTTAAGGTGTTAGGG 57.308 34.615 7.53 0.00 46.86 3.53
172 173 3.868619 TTGCACTTAAGGTGTTAGGGT 57.131 42.857 7.53 0.00 46.86 4.34
173 174 3.134574 TGCACTTAAGGTGTTAGGGTG 57.865 47.619 7.53 0.00 46.86 4.61
174 175 2.440253 TGCACTTAAGGTGTTAGGGTGT 59.560 45.455 7.53 0.00 46.86 4.16
175 176 3.072211 GCACTTAAGGTGTTAGGGTGTC 58.928 50.000 7.53 0.00 46.86 3.67
176 177 3.244457 GCACTTAAGGTGTTAGGGTGTCT 60.244 47.826 7.53 0.00 46.86 3.41
177 178 4.745783 GCACTTAAGGTGTTAGGGTGTCTT 60.746 45.833 7.53 0.00 46.86 3.01
178 179 4.995487 CACTTAAGGTGTTAGGGTGTCTTC 59.005 45.833 7.53 0.00 40.79 2.87
179 180 4.657039 ACTTAAGGTGTTAGGGTGTCTTCA 59.343 41.667 7.53 0.00 0.00 3.02
180 181 5.131475 ACTTAAGGTGTTAGGGTGTCTTCAA 59.869 40.000 7.53 0.00 0.00 2.69
181 182 3.487120 AGGTGTTAGGGTGTCTTCAAC 57.513 47.619 0.00 0.00 0.00 3.18
182 183 2.140717 GGTGTTAGGGTGTCTTCAACG 58.859 52.381 0.00 0.00 30.94 4.10
183 184 1.529865 GTGTTAGGGTGTCTTCAACGC 59.470 52.381 0.00 0.00 37.67 4.84
190 191 1.006571 TGTCTTCAACGCCGACCTC 60.007 57.895 0.00 0.00 0.00 3.85
196 197 2.663852 AACGCCGACCTCAAACCG 60.664 61.111 0.00 0.00 0.00 4.44
225 226 5.596836 TCTTTTTGGATGCAGTTGTTTCT 57.403 34.783 0.00 0.00 0.00 2.52
237 238 0.891904 TTGTTTCTACCCGGCAAGCC 60.892 55.000 0.00 0.00 0.00 4.35
248 249 1.907807 GGCAAGCCATCCAACACCA 60.908 57.895 6.14 0.00 35.81 4.17
249 250 1.290009 GCAAGCCATCCAACACCAC 59.710 57.895 0.00 0.00 0.00 4.16
256 258 2.234414 GCCATCCAACACCACATTCATT 59.766 45.455 0.00 0.00 0.00 2.57
294 296 2.440247 CCCTAAGGGCTTTGCGGG 60.440 66.667 4.57 4.57 35.35 6.13
371 374 1.084289 GATCCGCGCCTTTGTAGTTT 58.916 50.000 0.00 0.00 0.00 2.66
380 383 3.002862 CGCCTTTGTAGTTTGTTGCACTA 59.997 43.478 0.00 0.00 0.00 2.74
399 402 0.108377 ATTTTCGCGGCAAAATCCCC 60.108 50.000 6.13 0.00 31.53 4.81
475 478 3.075005 TCTTCTTCCCTCCCGCCG 61.075 66.667 0.00 0.00 0.00 6.46
476 479 3.391382 CTTCTTCCCTCCCGCCGT 61.391 66.667 0.00 0.00 0.00 5.68
511 518 5.163457 GGAGGAGAACTTGTCTAGAAGATGG 60.163 48.000 0.00 0.00 36.41 3.51
512 519 5.584913 AGGAGAACTTGTCTAGAAGATGGA 58.415 41.667 0.00 0.00 36.41 3.41
525 532 0.618968 AGATGGAGGTGGTGGAGGAC 60.619 60.000 0.00 0.00 0.00 3.85
559 566 2.871182 TGTCCGGAGATGAGAAATCG 57.129 50.000 3.06 0.00 0.00 3.34
561 568 1.681793 GTCCGGAGATGAGAAATCGGA 59.318 52.381 3.06 0.00 43.29 4.55
562 569 2.297597 GTCCGGAGATGAGAAATCGGAT 59.702 50.000 3.06 0.00 46.27 4.18
564 571 2.297315 CCGGAGATGAGAAATCGGATGA 59.703 50.000 0.00 0.00 39.83 2.92
580 587 2.093973 GGATGACCGAGAAGAAGCTCAA 60.094 50.000 0.00 0.00 34.56 3.02
581 588 3.589988 GATGACCGAGAAGAAGCTCAAA 58.410 45.455 0.00 0.00 34.56 2.69
585 592 1.989165 CCGAGAAGAAGCTCAAACTCG 59.011 52.381 19.16 19.16 44.05 4.18
617 624 2.422832 GGCCATGCTCAAAGAGAAGAAG 59.577 50.000 0.00 0.00 0.00 2.85
644 651 1.746220 CTCGACGAGAAGAAGGTGGAT 59.254 52.381 20.25 0.00 0.00 3.41
647 654 3.564644 TCGACGAGAAGAAGGTGGATATC 59.435 47.826 0.00 0.00 0.00 1.63
648 655 3.566322 CGACGAGAAGAAGGTGGATATCT 59.434 47.826 2.05 0.00 0.00 1.98
651 658 4.956700 ACGAGAAGAAGGTGGATATCTCAA 59.043 41.667 2.05 0.00 34.41 3.02
653 660 5.068460 CGAGAAGAAGGTGGATATCTCAACT 59.932 44.000 2.05 4.42 34.41 3.16
654 661 6.232581 AGAAGAAGGTGGATATCTCAACTG 57.767 41.667 11.17 0.00 31.76 3.16
668 675 2.867855 AACTGCTTCGGAGGACGCA 61.868 57.895 0.00 0.00 44.16 5.24
692 699 0.911769 TGCTCACCTTGTAGATGGGG 59.088 55.000 0.00 0.00 0.00 4.96
734 750 3.610040 TGATCGTGTAAGCCAAGATGT 57.390 42.857 0.00 0.00 41.54 3.06
736 752 3.684305 TGATCGTGTAAGCCAAGATGTTG 59.316 43.478 0.00 0.00 41.54 3.33
739 755 2.031245 CGTGTAAGCCAAGATGTTGCAA 60.031 45.455 0.00 0.00 31.64 4.08
766 782 0.252881 AGGATGAGTTGGAGAGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
773 789 3.035173 TTGGAGAGGGCAGATGCGG 62.035 63.158 0.00 0.00 43.26 5.69
813 829 4.477975 CGAGACGGAGGTGGCGAC 62.478 72.222 0.00 0.00 0.00 5.19
839 855 1.153086 GCATGGAGGCTCGGATTGT 60.153 57.895 8.69 0.00 0.00 2.71
840 856 0.749454 GCATGGAGGCTCGGATTGTT 60.749 55.000 8.69 0.00 0.00 2.83
841 857 1.019673 CATGGAGGCTCGGATTGTTG 58.980 55.000 8.69 0.00 0.00 3.33
842 858 0.620556 ATGGAGGCTCGGATTGTTGT 59.379 50.000 8.69 0.00 0.00 3.32
843 859 1.271856 TGGAGGCTCGGATTGTTGTA 58.728 50.000 8.69 0.00 0.00 2.41
844 860 1.066430 TGGAGGCTCGGATTGTTGTAC 60.066 52.381 8.69 0.00 0.00 2.90
872 1052 5.701290 AGTATGCCGATAGCTTTAAATGACC 59.299 40.000 0.00 0.00 44.23 4.02
875 1055 3.463944 CCGATAGCTTTAAATGACCGGT 58.536 45.455 6.92 6.92 0.00 5.28
877 1057 4.025145 CCGATAGCTTTAAATGACCGGTTC 60.025 45.833 9.42 2.34 0.00 3.62
882 1062 0.677414 TTAAATGACCGGTTCCCGCC 60.677 55.000 9.42 0.00 46.86 6.13
902 1082 3.993103 CGTGTCGACGGCTAATCC 58.007 61.111 11.62 0.00 42.18 3.01
905 1085 2.420466 GTCGACGGCTAATCCCCC 59.580 66.667 0.00 0.00 0.00 5.40
913 1093 1.004918 GCTAATCCCCCGATCCACG 60.005 63.158 0.00 0.00 42.18 4.94
927 1107 2.735478 CACGGCGTGCTCGGTTTA 60.735 61.111 28.30 0.00 37.56 2.01
934 1114 1.705337 CGTGCTCGGTTTATGGGCAG 61.705 60.000 0.00 0.00 33.47 4.85
936 1116 1.748879 GCTCGGTTTATGGGCAGCA 60.749 57.895 0.00 0.00 0.00 4.41
950 1130 2.104792 GGGCAGCATTGGAGATACACTA 59.895 50.000 0.00 0.00 0.00 2.74
1391 1574 3.449227 CTACTGGCGCCTCGTCCA 61.449 66.667 29.70 4.55 33.65 4.02
1528 1711 2.359850 TCACGGTGAGGCCATTGC 60.360 61.111 5.01 0.00 36.97 3.56
1529 1712 2.360350 CACGGTGAGGCCATTGCT 60.360 61.111 5.01 0.00 37.74 3.91
1530 1713 2.045926 ACGGTGAGGCCATTGCTC 60.046 61.111 5.01 0.00 37.74 4.26
1531 1714 2.825836 CGGTGAGGCCATTGCTCC 60.826 66.667 5.01 0.59 37.74 4.70
1676 1864 9.265901 CCTAATCTGTTTAACATGGTATCAGAG 57.734 37.037 21.95 13.53 34.70 3.35
1677 1865 7.559590 AATCTGTTTAACATGGTATCAGAGC 57.440 36.000 21.95 1.13 34.70 4.09
1792 2001 1.515954 CGTTCATGGCGTCTACCCT 59.484 57.895 0.00 0.00 0.00 4.34
1935 2145 1.003866 GAAATCCATCGCTTGCGTACC 60.004 52.381 14.70 0.00 0.00 3.34
1953 2163 4.672251 GTGCTCCCATGCAGGATT 57.328 55.556 0.00 0.00 44.20 3.01
2097 2349 3.374402 CTCGTGGCACTCCCGTCT 61.374 66.667 16.72 0.00 35.87 4.18
2453 2705 1.119574 ACAACTACCTCCTGTGGCGT 61.120 55.000 0.00 0.00 0.00 5.68
2748 3002 1.678970 GCCCGTTCCTCTGCCATTT 60.679 57.895 0.00 0.00 0.00 2.32
2754 3008 2.159707 CGTTCCTCTGCCATTTGTAACG 60.160 50.000 0.00 0.00 33.51 3.18
2815 3069 4.202253 GGCCTTCTTCAACAAGGTCAAAAT 60.202 41.667 0.00 0.00 44.01 1.82
2995 3249 1.745320 AACACCGAACAGAGGCTCGT 61.745 55.000 9.22 7.50 33.17 4.18
4085 4353 5.681337 TTCAAGCACATGTTGAACGATTA 57.319 34.783 7.25 0.00 38.66 1.75
4277 4547 1.610522 GACACTTCTTGCACATGCCTT 59.389 47.619 0.49 0.00 41.18 4.35
4394 4664 5.525745 TCGAAGTGTTGCTTAATGAAACTCA 59.474 36.000 0.00 0.00 37.59 3.41
4643 4913 1.115930 ACTCCCGTCACTGAGTTGCT 61.116 55.000 0.00 0.00 38.67 3.91
4829 5099 4.715130 TGCCTCCGCCACTACCCT 62.715 66.667 0.00 0.00 0.00 4.34
4902 5172 3.998672 GTGACCAAGTCGCCGGGA 61.999 66.667 2.18 0.00 37.12 5.14
5097 5367 1.375908 GGATGCGCCTGTTGACTCA 60.376 57.895 4.18 0.00 0.00 3.41
5288 5558 0.763652 CATGCTGAGGCTGACCCTAT 59.236 55.000 0.00 0.00 46.60 2.57
5358 5628 3.131850 TGCGATGGAGCAGGAGATA 57.868 52.632 0.00 0.00 42.92 1.98
5486 5756 2.290260 CCATTGAGAGGTACAAGGCACA 60.290 50.000 0.00 0.00 0.00 4.57
5626 5896 2.238245 GCTTCGACAGCTTGATGTTG 57.762 50.000 10.97 0.18 46.27 3.33
5962 6232 2.878406 GGTGCTGAGTTTGCTGTTAAGA 59.122 45.455 0.00 0.00 0.00 2.10
6341 6611 4.229639 TCATATGGTCTCCATCTTCAGCT 58.770 43.478 2.13 0.00 40.74 4.24
6364 6634 1.202348 CGCGTTCTGGACTGATCTCAT 60.202 52.381 0.00 0.00 0.00 2.90
6450 6721 4.280929 GTGTTCTTTGGGCCTAACTTGATT 59.719 41.667 0.00 0.00 0.00 2.57
6775 7046 2.003937 TTTCACTAAACCCTTGCCCC 57.996 50.000 0.00 0.00 0.00 5.80
6947 7220 2.203877 AGCCGTACCCACCAAGGA 60.204 61.111 0.00 0.00 41.22 3.36
6962 7235 4.336433 CACCAAGGATATCGAGCATTGTTT 59.664 41.667 8.56 0.00 0.00 2.83
6973 7247 7.624360 ATCGAGCATTGTTTCAAACCTAATA 57.376 32.000 0.00 0.00 0.00 0.98
7330 7616 2.932234 CGACGAGGTGGTCAGCCTT 61.932 63.158 0.00 0.00 36.29 4.35
7501 7787 1.808390 GCCGTATCTGAACGCCGTT 60.808 57.895 0.16 0.16 41.51 4.44
7622 7929 1.596934 GCGGAGGTGAACATCCTGA 59.403 57.895 11.96 0.00 44.12 3.86
7627 7934 0.179100 AGGTGAACATCCTGATCGCG 60.179 55.000 0.00 0.00 31.52 5.87
7631 7938 0.598680 GAACATCCTGATCGCGGAGG 60.599 60.000 6.13 9.91 38.26 4.30
7633 7940 1.300465 CATCCTGATCGCGGAGGTG 60.300 63.158 6.13 7.02 33.29 4.00
7636 7943 3.147595 CTGATCGCGGAGGTGGGA 61.148 66.667 6.13 0.00 35.12 4.37
7844 8151 1.247419 CGTGAGAGAGCTGGAGTGGT 61.247 60.000 0.00 0.00 0.00 4.16
7888 8195 0.613572 TGGACATGACCGAGGTGCTA 60.614 55.000 9.68 0.00 0.00 3.49
8010 8317 3.937706 ACAATCAGCAGCATCACTTAGAC 59.062 43.478 0.00 0.00 0.00 2.59
8129 8468 4.142047 GGAAACGATTGCGCGCGA 62.142 61.111 37.18 25.63 42.48 5.87
8149 8488 4.736896 GAGAAAGCGGGCGGTCGT 62.737 66.667 0.00 0.00 0.00 4.34
8228 8569 0.665670 CCTCGCATCGCTATCCACAG 60.666 60.000 0.00 0.00 0.00 3.66
8484 8842 1.096386 AGAGGTCTCGCGCGTAGATT 61.096 55.000 30.98 20.33 34.09 2.40
8502 8860 5.633830 AGATTAACTTCCACGACGTCTTA 57.366 39.130 14.70 0.43 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.746611 CCGAGTGTAAATTACCCGTTATCC 59.253 45.833 0.18 0.00 0.00 2.59
1 2 4.209911 GCCGAGTGTAAATTACCCGTTATC 59.790 45.833 0.18 0.00 0.00 1.75
4 5 2.289569 TGCCGAGTGTAAATTACCCGTT 60.290 45.455 0.18 0.00 0.00 4.44
6 7 2.012937 TGCCGAGTGTAAATTACCCG 57.987 50.000 0.18 2.36 0.00 5.28
7 8 4.514066 CCTAATGCCGAGTGTAAATTACCC 59.486 45.833 0.18 0.00 0.00 3.69
100 101 5.278858 CCGTACCCTGAGTTTATGGATACTC 60.279 48.000 0.00 0.00 40.89 2.59
156 157 4.657039 TGAAGACACCCTAACACCTTAAGT 59.343 41.667 0.97 0.00 0.00 2.24
157 158 5.223449 TGAAGACACCCTAACACCTTAAG 57.777 43.478 0.00 0.00 0.00 1.85
158 159 5.370679 GTTGAAGACACCCTAACACCTTAA 58.629 41.667 0.00 0.00 0.00 1.85
159 160 4.501915 CGTTGAAGACACCCTAACACCTTA 60.502 45.833 0.00 0.00 0.00 2.69
160 161 3.743269 CGTTGAAGACACCCTAACACCTT 60.743 47.826 0.00 0.00 0.00 3.50
161 162 2.224209 CGTTGAAGACACCCTAACACCT 60.224 50.000 0.00 0.00 0.00 4.00
162 163 2.140717 CGTTGAAGACACCCTAACACC 58.859 52.381 0.00 0.00 0.00 4.16
163 164 1.529865 GCGTTGAAGACACCCTAACAC 59.470 52.381 0.00 0.00 0.00 3.32
164 165 1.541670 GGCGTTGAAGACACCCTAACA 60.542 52.381 0.00 0.00 0.00 2.41
165 166 1.154197 GGCGTTGAAGACACCCTAAC 58.846 55.000 0.00 0.00 0.00 2.34
166 167 0.320073 CGGCGTTGAAGACACCCTAA 60.320 55.000 0.00 0.00 0.00 2.69
167 168 1.180456 TCGGCGTTGAAGACACCCTA 61.180 55.000 6.85 0.00 0.00 3.53
168 169 2.030562 CGGCGTTGAAGACACCCT 59.969 61.111 0.00 0.00 0.00 4.34
169 170 2.029964 TCGGCGTTGAAGACACCC 59.970 61.111 6.85 0.00 0.00 4.61
170 171 2.315386 GGTCGGCGTTGAAGACACC 61.315 63.158 6.85 0.00 36.68 4.16
171 172 1.282930 GAGGTCGGCGTTGAAGACAC 61.283 60.000 6.85 0.00 36.68 3.67
172 173 1.006571 GAGGTCGGCGTTGAAGACA 60.007 57.895 6.85 0.00 36.68 3.41
173 174 0.599204 TTGAGGTCGGCGTTGAAGAC 60.599 55.000 6.85 0.00 0.00 3.01
174 175 0.105224 TTTGAGGTCGGCGTTGAAGA 59.895 50.000 6.85 0.00 0.00 2.87
175 176 0.234884 GTTTGAGGTCGGCGTTGAAG 59.765 55.000 6.85 0.00 0.00 3.02
176 177 1.161563 GGTTTGAGGTCGGCGTTGAA 61.162 55.000 6.85 0.00 0.00 2.69
177 178 1.595929 GGTTTGAGGTCGGCGTTGA 60.596 57.895 6.85 0.00 0.00 3.18
178 179 2.943653 GGTTTGAGGTCGGCGTTG 59.056 61.111 6.85 0.00 0.00 4.10
179 180 2.663852 CGGTTTGAGGTCGGCGTT 60.664 61.111 6.85 0.00 0.00 4.84
182 183 3.119096 GAGCGGTTTGAGGTCGGC 61.119 66.667 0.00 0.00 0.00 5.54
185 186 1.134560 AGATACGAGCGGTTTGAGGTC 59.865 52.381 0.00 0.00 0.00 3.85
186 187 1.183549 AGATACGAGCGGTTTGAGGT 58.816 50.000 0.00 0.00 0.00 3.85
190 191 3.187637 TCCAAAAAGATACGAGCGGTTTG 59.812 43.478 0.00 0.00 0.00 2.93
196 197 3.375299 ACTGCATCCAAAAAGATACGAGC 59.625 43.478 0.00 0.00 0.00 5.03
225 226 2.607568 TTGGATGGCTTGCCGGGTA 61.608 57.895 2.18 0.00 0.00 3.69
237 238 5.902613 ACTAATGAATGTGGTGTTGGATG 57.097 39.130 0.00 0.00 0.00 3.51
248 249 3.840468 TGCGACGTGTACTAATGAATGT 58.160 40.909 0.00 0.00 0.00 2.71
249 250 3.857665 ACTGCGACGTGTACTAATGAATG 59.142 43.478 0.00 0.00 0.00 2.67
256 258 0.166597 CCGAACTGCGACGTGTACTA 59.833 55.000 0.00 0.00 44.57 1.82
294 296 0.309922 TGTGACTCGTGTCCGAACTC 59.690 55.000 14.57 0.63 43.69 3.01
338 340 1.369091 CGGATCCGCCTCAGTTTTGG 61.369 60.000 23.37 0.00 0.00 3.28
371 374 0.109964 GCCGCGAAAATAGTGCAACA 60.110 50.000 8.23 0.00 41.43 3.33
380 383 0.108377 GGGGATTTTGCCGCGAAAAT 60.108 50.000 15.81 15.81 38.07 1.82
399 402 2.488153 GTTGGATGGAAAAAGAGACCGG 59.512 50.000 0.00 0.00 0.00 5.28
401 404 3.255888 GTGGTTGGATGGAAAAAGAGACC 59.744 47.826 0.00 0.00 0.00 3.85
402 405 4.145052 AGTGGTTGGATGGAAAAAGAGAC 58.855 43.478 0.00 0.00 0.00 3.36
475 478 3.391665 CTCCTCCGGGTCCATGCAC 62.392 68.421 0.00 0.00 0.00 4.57
476 479 3.083349 CTCCTCCGGGTCCATGCA 61.083 66.667 0.00 0.00 0.00 3.96
485 492 2.724454 TCTAGACAAGTTCTCCTCCGG 58.276 52.381 0.00 0.00 35.55 5.14
497 504 3.515502 CACCACCTCCATCTTCTAGACAA 59.484 47.826 0.00 0.00 0.00 3.18
501 508 2.697751 CTCCACCACCTCCATCTTCTAG 59.302 54.545 0.00 0.00 0.00 2.43
504 511 0.543749 CCTCCACCACCTCCATCTTC 59.456 60.000 0.00 0.00 0.00 2.87
540 547 1.409064 CCGATTTCTCATCTCCGGACA 59.591 52.381 0.00 0.00 39.31 4.02
541 548 1.681793 TCCGATTTCTCATCTCCGGAC 59.318 52.381 0.00 0.00 40.69 4.79
559 566 1.478510 TGAGCTTCTTCTCGGTCATCC 59.521 52.381 0.00 0.00 35.90 3.51
561 568 3.007398 AGTTTGAGCTTCTTCTCGGTCAT 59.993 43.478 0.00 0.00 37.48 3.06
562 569 2.365617 AGTTTGAGCTTCTTCTCGGTCA 59.634 45.455 0.00 0.00 35.90 4.02
564 571 2.608261 CGAGTTTGAGCTTCTTCTCGGT 60.608 50.000 17.93 0.00 40.29 4.69
580 587 1.971357 TGGCCTTCTTCTCTTCGAGTT 59.029 47.619 3.32 0.00 0.00 3.01
581 588 1.633774 TGGCCTTCTTCTCTTCGAGT 58.366 50.000 3.32 0.00 0.00 4.18
585 592 2.287769 GAGCATGGCCTTCTTCTCTTC 58.712 52.381 3.32 0.00 0.00 2.87
598 605 2.422832 GCCTTCTTCTCTTTGAGCATGG 59.577 50.000 0.00 0.00 0.00 3.66
617 624 1.880340 CTTCTCGTCGAGCATGGCC 60.880 63.158 17.61 0.00 0.00 5.36
644 651 2.427453 GTCCTCCGAAGCAGTTGAGATA 59.573 50.000 0.00 0.00 0.00 1.98
647 654 0.734253 CGTCCTCCGAAGCAGTTGAG 60.734 60.000 0.00 0.00 39.56 3.02
648 655 1.289066 CGTCCTCCGAAGCAGTTGA 59.711 57.895 0.00 0.00 39.56 3.18
651 658 3.303135 TGCGTCCTCCGAAGCAGT 61.303 61.111 0.00 0.00 46.63 4.40
654 661 0.741221 ATCTTTGCGTCCTCCGAAGC 60.741 55.000 0.00 0.00 43.05 3.86
668 675 4.521146 CCATCTACAAGGTGAGCATCTTT 58.479 43.478 0.00 0.00 34.92 2.52
677 684 5.630415 TCTAAATCCCCATCTACAAGGTG 57.370 43.478 0.00 0.00 0.00 4.00
678 685 7.017651 CCTTATCTAAATCCCCATCTACAAGGT 59.982 40.741 0.00 0.00 0.00 3.50
680 687 8.097662 GTCCTTATCTAAATCCCCATCTACAAG 58.902 40.741 0.00 0.00 0.00 3.16
682 689 7.016268 GTGTCCTTATCTAAATCCCCATCTACA 59.984 40.741 0.00 0.00 0.00 2.74
683 690 7.016268 TGTGTCCTTATCTAAATCCCCATCTAC 59.984 40.741 0.00 0.00 0.00 2.59
684 691 7.079700 TGTGTCCTTATCTAAATCCCCATCTA 58.920 38.462 0.00 0.00 0.00 1.98
692 699 9.213799 GATCATCCTTGTGTCCTTATCTAAATC 57.786 37.037 0.00 0.00 0.00 2.17
736 752 0.674895 ACTCATCCTTCTGCCGTTGC 60.675 55.000 0.00 0.00 38.26 4.17
739 755 0.036010 CCAACTCATCCTTCTGCCGT 60.036 55.000 0.00 0.00 0.00 5.68
766 782 2.759973 TCCTTCTCCGCCGCATCT 60.760 61.111 0.00 0.00 0.00 2.90
801 817 1.811266 CAATCTGTCGCCACCTCCG 60.811 63.158 0.00 0.00 0.00 4.63
804 820 1.078848 GCTCAATCTGTCGCCACCT 60.079 57.895 0.00 0.00 0.00 4.00
807 823 0.745486 CCATGCTCAATCTGTCGCCA 60.745 55.000 0.00 0.00 0.00 5.69
808 824 0.462581 TCCATGCTCAATCTGTCGCC 60.463 55.000 0.00 0.00 0.00 5.54
813 829 3.802862 AGCCTCCATGCTCAATCTG 57.197 52.632 0.00 0.00 36.75 2.90
834 850 3.319238 GCATACTGCCGTACAACAATC 57.681 47.619 0.00 0.00 37.42 2.67
855 1035 4.025145 GGAACCGGTCATTTAAAGCTATCG 60.025 45.833 8.04 0.00 0.00 2.92
913 1093 2.469516 CCCATAAACCGAGCACGCC 61.470 63.158 0.00 0.00 38.29 5.68
916 1096 1.993369 GCTGCCCATAAACCGAGCAC 61.993 60.000 0.00 0.00 0.00 4.40
927 1107 1.496001 TGTATCTCCAATGCTGCCCAT 59.504 47.619 0.00 0.00 35.06 4.00
934 1114 6.761242 TGTATGTTGTAGTGTATCTCCAATGC 59.239 38.462 0.00 0.00 0.00 3.56
936 1116 8.198109 GTCTGTATGTTGTAGTGTATCTCCAAT 58.802 37.037 0.00 0.00 0.00 3.16
950 1130 2.703536 TCTGGTGTGGTCTGTATGTTGT 59.296 45.455 0.00 0.00 0.00 3.32
1034 1214 1.197430 AGAGAGGGTGCTGAACAGGG 61.197 60.000 3.99 0.00 0.00 4.45
1191 1374 0.915872 AGATGACTGGACCATGGCCA 60.916 55.000 21.86 21.86 0.00 5.36
1192 1375 0.179034 GAGATGACTGGACCATGGCC 60.179 60.000 13.04 14.81 0.00 5.36
1200 1383 2.885113 CGCACGGAGATGACTGGA 59.115 61.111 0.00 0.00 0.00 3.86
1935 2145 1.452651 AATCCTGCATGGGAGCACG 60.453 57.895 0.80 0.00 40.11 5.34
1953 2163 1.756665 CCAGGGATGGATCGCATCA 59.243 57.895 19.48 0.16 41.67 3.07
2097 2349 2.788640 GCCCACCGTACGGCATCTA 61.789 63.158 33.62 0.00 45.01 1.98
2453 2705 4.254709 AGCGGCAACACCTGAGCA 62.255 61.111 1.45 0.00 35.61 4.26
2748 3002 0.830444 ACCTCACCCAGCTCGTTACA 60.830 55.000 0.00 0.00 0.00 2.41
2754 3008 0.687354 TTCTTGACCTCACCCAGCTC 59.313 55.000 0.00 0.00 0.00 4.09
2815 3069 3.064207 GACGACAGTGTATCAGCCAAAA 58.936 45.455 0.00 0.00 0.00 2.44
3140 3401 3.356639 CTCGCAGTGGAGCCGCTTA 62.357 63.158 0.00 0.00 34.14 3.09
4085 4353 8.584157 TGAACATGGATAATTTTGTGCTTAAGT 58.416 29.630 4.02 0.00 0.00 2.24
4126 4396 1.785647 AGGTTACGATACTCACCCCC 58.214 55.000 0.00 0.00 0.00 5.40
4127 4397 4.160252 TGTTAAGGTTACGATACTCACCCC 59.840 45.833 0.00 0.00 0.00 4.95
4128 4398 5.105063 GTGTTAAGGTTACGATACTCACCC 58.895 45.833 0.00 0.00 0.00 4.61
4394 4664 4.846940 ACACTTTGAGGAGGGAGTAATCTT 59.153 41.667 0.00 0.00 0.00 2.40
4643 4913 3.897239 TCAGGCAAAACTGGAAAAGAGA 58.103 40.909 0.00 0.00 38.98 3.10
4829 5099 4.351938 CGACGTCGGGGTCAAGCA 62.352 66.667 29.70 0.00 36.73 3.91
5288 5558 2.542178 CGAAAATGTCGTGGTTCAGTCA 59.458 45.455 0.00 0.00 45.09 3.41
5358 5628 3.450457 TGTTGTTTCTTTGAAGGGCATGT 59.550 39.130 0.00 0.00 0.00 3.21
5486 5756 2.656698 GAACCCCTTGGCAACCAGGT 62.657 60.000 0.00 0.02 33.81 4.00
5962 6232 6.894103 AGAAAATAATGCAGTCTCCCAAGATT 59.106 34.615 0.00 0.00 33.08 2.40
6061 6331 1.072332 ACTGCAACATACCGGCACA 59.928 52.632 0.00 0.00 33.34 4.57
6308 6578 4.141620 GGAGACCATATGAACCAGTGTGAT 60.142 45.833 3.65 0.00 0.00 3.06
6341 6611 1.005037 ATCAGTCCAGAACGCGCAA 60.005 52.632 5.73 0.00 0.00 4.85
6364 6634 2.358957 CCAGTCGGCATCAGAAAATGA 58.641 47.619 0.00 0.00 43.70 2.57
6450 6721 4.953010 TTGCGAGCTTGCCAGGCA 62.953 61.111 23.34 11.22 36.47 4.75
6910 7182 7.878477 CGGCTGTCGTATATTTATAAAAGGA 57.122 36.000 1.21 0.00 0.00 3.36
6926 7198 3.229156 TTGGTGGGTACGGCTGTCG 62.229 63.158 0.00 0.00 45.88 4.35
6947 7220 7.624360 TTAGGTTTGAAACAATGCTCGATAT 57.376 32.000 10.53 0.00 0.00 1.63
6962 7235 7.879160 ACGGAGTGTTAAACATATTAGGTTTGA 59.121 33.333 14.85 5.67 42.51 2.69
7573 7859 2.196925 CCTGTAGCCGCCGATCTCT 61.197 63.158 0.00 0.00 0.00 3.10
7616 7923 2.502492 CCACCTCCGCGATCAGGAT 61.502 63.158 21.27 6.79 37.13 3.24
7636 7943 4.678269 CACACCGTCTCGTCGCGT 62.678 66.667 5.77 0.00 0.00 6.01
7718 8025 0.688087 ATCTCCTTCCTCCCGGTGAC 60.688 60.000 0.00 0.00 0.00 3.67
7831 8138 2.753029 GGCAACCACTCCAGCTCT 59.247 61.111 0.00 0.00 0.00 4.09
7861 8168 1.892819 CGGTCATGTCCACCTGCTCT 61.893 60.000 9.71 0.00 0.00 4.09
7888 8195 1.338107 TCATGACCGTGGTGAACTCT 58.662 50.000 0.00 0.00 0.00 3.24
8010 8317 3.197790 CGCCGCTGTTGGAGATGG 61.198 66.667 0.00 0.00 0.00 3.51
8094 8407 3.493440 CCGCGCGTTAGTTTCCCC 61.493 66.667 29.95 0.00 0.00 4.81
8213 8554 1.502163 GGCACTGTGGATAGCGATGC 61.502 60.000 10.21 0.00 0.00 3.91
8255 8598 1.451028 GAAGCGGCAGAGGAAGCAT 60.451 57.895 1.45 0.00 0.00 3.79
8470 8828 2.540361 GGAAGTTAATCTACGCGCGAGA 60.540 50.000 39.36 31.27 0.00 4.04
8479 8837 5.633830 AAGACGTCGTGGAAGTTAATCTA 57.366 39.130 10.46 0.00 0.00 1.98
8484 8842 3.554524 CGTTAAGACGTCGTGGAAGTTA 58.445 45.455 14.55 0.72 44.08 2.24
8530 8888 2.617308 CTGTTATAAGACGAGGCGGAGA 59.383 50.000 0.00 0.00 0.00 3.71
8587 8948 3.531207 CTCGGCGATGAGGAGGCA 61.531 66.667 11.27 0.00 32.18 4.75
8658 9019 1.961793 CCCAGAAGGTGTTTTCGTCA 58.038 50.000 0.00 0.00 32.33 4.35
8746 9107 1.818850 GCGTTAACGAGATCGCACTA 58.181 50.000 31.03 0.00 46.40 2.74
8806 9167 1.403780 GGTATCGAGCCACACGTCTTT 60.404 52.381 4.16 0.00 0.00 2.52
8832 9193 3.057969 TCATCATTCTCGCTGGTGTTT 57.942 42.857 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.