Multiple sequence alignment - TraesCS2D01G119900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G119900 chr2D 100.000 2581 0 0 1 2581 69148159 69150739 0.000000e+00 4767
1 TraesCS2D01G119900 chr2D 87.278 1407 122 26 778 2148 65265916 65264531 0.000000e+00 1554
2 TraesCS2D01G119900 chr2D 86.966 1404 125 21 770 2148 64732339 64733709 0.000000e+00 1526
3 TraesCS2D01G119900 chr2D 88.164 997 56 26 770 1726 68903108 68902134 0.000000e+00 1131
4 TraesCS2D01G119900 chr2D 91.335 427 37 0 1724 2150 68888185 68887759 4.520000e-163 584
5 TraesCS2D01G119900 chr2D 100.000 248 0 0 2901 3148 69151059 69151306 2.860000e-125 459
6 TraesCS2D01G119900 chr2D 84.925 398 26 18 334 704 68903826 68903436 3.830000e-99 372
7 TraesCS2D01G119900 chr2D 85.638 188 19 2 2191 2371 64921021 64921207 1.150000e-44 191
8 TraesCS2D01G119900 chr2B 87.420 1399 122 21 774 2148 101072897 101074265 0.000000e+00 1559
9 TraesCS2D01G119900 chr2B 87.304 1402 119 26 778 2148 101235730 101234357 0.000000e+00 1548
10 TraesCS2D01G119900 chr2B 91.422 851 69 3 1394 2244 101418960 101418114 0.000000e+00 1164
11 TraesCS2D01G119900 chr2B 91.304 851 70 3 1394 2244 101451878 101451032 0.000000e+00 1158
12 TraesCS2D01G119900 chr2B 91.304 851 69 4 1394 2244 101432861 101432016 0.000000e+00 1157
13 TraesCS2D01G119900 chr2B 88.591 596 32 22 769 1348 101452465 101451890 0.000000e+00 691
14 TraesCS2D01G119900 chr2B 84.992 593 32 22 770 1348 101419521 101418972 1.650000e-152 549
15 TraesCS2D01G119900 chr2B 90.488 389 20 11 970 1348 101433254 101432873 6.060000e-137 497
16 TraesCS2D01G119900 chr2B 89.211 380 29 8 336 704 101420221 101419843 6.150000e-127 464
17 TraesCS2D01G119900 chr2B 89.211 380 29 8 336 704 101434121 101433743 6.150000e-127 464
18 TraesCS2D01G119900 chr2B 87.087 333 31 7 383 704 101453117 101452786 1.780000e-97 366
19 TraesCS2D01G119900 chr2B 86.184 304 27 5 2293 2581 101418120 101417817 6.550000e-82 315
20 TraesCS2D01G119900 chr2B 85.855 304 27 9 2293 2581 101432022 101431720 3.050000e-80 309
21 TraesCS2D01G119900 chr2B 85.526 304 27 7 2293 2581 101451038 101450737 5.100000e-78 302
22 TraesCS2D01G119900 chr2B 82.069 290 33 15 420 704 101072334 101072609 2.440000e-56 230
23 TraesCS2D01G119900 chr2B 92.308 143 7 3 770 908 101433421 101433279 1.910000e-47 200
24 TraesCS2D01G119900 chr2B 86.170 188 19 1 2191 2371 101077230 101077417 2.480000e-46 196
25 TraesCS2D01G119900 chr2B 86.047 129 7 4 2975 3103 101416140 101416023 9.160000e-26 128
26 TraesCS2D01G119900 chr2B 88.542 96 7 4 3012 3103 101428338 101428243 2.570000e-21 113
27 TraesCS2D01G119900 chr2B 88.542 96 7 4 3012 3103 101441812 101441717 2.570000e-21 113
28 TraesCS2D01G119900 chr2B 95.714 70 3 0 704 773 101452715 101452646 2.570000e-21 113
29 TraesCS2D01G119900 chr2A 88.115 1077 103 12 1522 2581 65702506 65701438 0.000000e+00 1256
30 TraesCS2D01G119900 chr2A 91.942 757 39 8 778 1525 65703523 65702780 0.000000e+00 1040
31 TraesCS2D01G119900 chr2A 89.344 244 11 6 2905 3148 65700704 65700476 3.070000e-75 292
32 TraesCS2D01G119900 chr2A 89.030 237 12 6 415 637 65704127 65703891 6.650000e-72 281
33 TraesCS2D01G119900 chr2A 90.991 111 6 2 294 400 65812888 65812778 2.530000e-31 147
34 TraesCS2D01G119900 chr2A 96.154 78 3 0 704 781 65703780 65703703 9.160000e-26 128
35 TraesCS2D01G119900 chr6D 94.286 175 10 0 1 175 12278172 12277998 5.180000e-68 268
36 TraesCS2D01G119900 chr6D 93.714 175 11 0 1 175 12274900 12274726 2.410000e-66 263
37 TraesCS2D01G119900 chr3D 93.714 175 11 0 1 175 94024204 94024030 2.410000e-66 263
38 TraesCS2D01G119900 chr3D 92.857 98 6 1 1 98 94020937 94020841 1.180000e-29 141
39 TraesCS2D01G119900 chr3D 96.250 80 3 0 96 175 94008895 94008816 7.080000e-27 132
40 TraesCS2D01G119900 chr7B 92.571 175 13 0 1 175 684143965 684144139 5.210000e-63 252
41 TraesCS2D01G119900 chr1B 89.130 184 15 5 1 181 229964279 229964098 1.140000e-54 224
42 TraesCS2D01G119900 chr1B 89.326 178 14 5 1 175 229994146 229993971 5.290000e-53 219
43 TraesCS2D01G119900 chr7A 87.500 120 14 1 56 175 704626112 704625994 1.520000e-28 137
44 TraesCS2D01G119900 chr5A 84.545 110 17 0 2406 2515 544253335 544253226 3.320000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G119900 chr2D 69148159 69151306 3147 False 2613.000000 4767 100.000000 1 3148 2 chr2D.!!$F3 3147
1 TraesCS2D01G119900 chr2D 65264531 65265916 1385 True 1554.000000 1554 87.278000 778 2148 1 chr2D.!!$R1 1370
2 TraesCS2D01G119900 chr2D 64732339 64733709 1370 False 1526.000000 1526 86.966000 770 2148 1 chr2D.!!$F1 1378
3 TraesCS2D01G119900 chr2D 68902134 68903826 1692 True 751.500000 1131 86.544500 334 1726 2 chr2D.!!$R3 1392
4 TraesCS2D01G119900 chr2B 101234357 101235730 1373 True 1548.000000 1548 87.304000 778 2148 1 chr2B.!!$R1 1370
5 TraesCS2D01G119900 chr2B 101072334 101077417 5083 False 661.666667 1559 85.219667 420 2371 3 chr2B.!!$F1 1951
6 TraesCS2D01G119900 chr2B 101450737 101453117 2380 True 526.000000 1158 89.644400 383 2581 5 chr2B.!!$R5 2198
7 TraesCS2D01G119900 chr2B 101416023 101420221 4198 True 524.000000 1164 87.571200 336 3103 5 chr2B.!!$R3 2767
8 TraesCS2D01G119900 chr2B 101428243 101434121 5878 True 456.666667 1157 89.618000 336 3103 6 chr2B.!!$R4 2767
9 TraesCS2D01G119900 chr2A 65700476 65704127 3651 True 599.400000 1256 90.917000 415 3148 5 chr2A.!!$R2 2733
10 TraesCS2D01G119900 chr6D 12274726 12278172 3446 True 265.500000 268 94.000000 1 175 2 chr6D.!!$R1 174
11 TraesCS2D01G119900 chr3D 94020841 94024204 3363 True 202.000000 263 93.285500 1 175 2 chr3D.!!$R2 174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.103208 GGATCGCCGACACAGATCTT 59.897 55.0 0.0 0.0 40.28 2.40 F
255 256 0.181587 TTCCCGCCTGTTGAAGAACA 59.818 50.0 0.0 0.0 39.88 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2554 0.247460 CGTGATGGTGAGAGGCAAGA 59.753 55.0 0.0 0.0 0.00 3.02 R
2174 5417 0.748005 AACTGCCCATCACCGCATAC 60.748 55.0 0.0 0.0 33.78 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 5.940470 TCTGTTTCCTTCTTCCTGCTATTTC 59.060 40.000 0.00 0.00 0.00 2.17
115 116 5.273208 TCTAGGACTTCTCCTTGCTAATGT 58.727 41.667 0.00 0.00 45.77 2.71
149 150 1.570857 CCCAAGGTGATGGCCCACTA 61.571 60.000 11.36 0.00 39.26 2.74
165 166 0.907704 ACTATCCAGCCCAACACGGA 60.908 55.000 0.00 0.00 36.56 4.69
170 171 4.778143 AGCCCAACACGGATCGCC 62.778 66.667 0.00 0.00 36.56 5.54
180 181 4.327885 GGATCGCCGACACAGATC 57.672 61.111 0.00 0.00 39.84 2.75
181 182 1.736586 GGATCGCCGACACAGATCT 59.263 57.895 0.00 0.00 40.28 2.75
182 183 0.103208 GGATCGCCGACACAGATCTT 59.897 55.000 0.00 0.00 40.28 2.40
183 184 1.482278 GATCGCCGACACAGATCTTC 58.518 55.000 0.00 0.00 38.13 2.87
184 185 0.103208 ATCGCCGACACAGATCTTCC 59.897 55.000 0.00 0.00 0.00 3.46
185 186 1.519455 CGCCGACACAGATCTTCCC 60.519 63.158 0.00 0.00 0.00 3.97
186 187 1.519455 GCCGACACAGATCTTCCCG 60.519 63.158 0.00 0.00 0.00 5.14
187 188 1.519455 CCGACACAGATCTTCCCGC 60.519 63.158 0.00 0.00 0.00 6.13
188 189 1.874019 CGACACAGATCTTCCCGCG 60.874 63.158 0.00 0.00 0.00 6.46
189 190 2.125512 ACACAGATCTTCCCGCGC 60.126 61.111 0.00 0.00 0.00 6.86
190 191 2.125552 CACAGATCTTCCCGCGCA 60.126 61.111 8.75 0.00 0.00 6.09
191 192 2.169789 CACAGATCTTCCCGCGCAG 61.170 63.158 8.75 0.00 0.00 5.18
192 193 2.587194 CAGATCTTCCCGCGCAGG 60.587 66.667 8.75 5.49 40.63 4.85
193 194 4.537433 AGATCTTCCCGCGCAGGC 62.537 66.667 8.75 0.00 39.21 4.85
210 211 2.252260 CGGAAGCACGCCAAACTG 59.748 61.111 0.00 0.00 0.00 3.16
211 212 2.644992 GGAAGCACGCCAAACTGG 59.355 61.111 0.00 0.00 41.55 4.00
212 213 2.193536 GGAAGCACGCCAAACTGGT 61.194 57.895 0.00 0.00 40.46 4.00
213 214 1.282875 GAAGCACGCCAAACTGGTC 59.717 57.895 0.00 0.00 40.46 4.02
214 215 2.130073 GAAGCACGCCAAACTGGTCC 62.130 60.000 0.00 0.00 40.46 4.46
215 216 4.025401 GCACGCCAAACTGGTCCG 62.025 66.667 0.00 0.00 40.46 4.79
216 217 4.025401 CACGCCAAACTGGTCCGC 62.025 66.667 0.00 0.00 40.46 5.54
228 229 4.218478 GTCCGCGCGCGCTAAAAT 62.218 61.111 45.97 0.00 39.32 1.82
229 230 3.492545 TCCGCGCGCGCTAAAATT 61.493 55.556 45.97 0.00 39.32 1.82
230 231 2.165940 TCCGCGCGCGCTAAAATTA 61.166 52.632 45.97 23.42 39.32 1.40
231 232 1.717728 CCGCGCGCGCTAAAATTAG 60.718 57.895 45.97 29.95 39.32 1.73
232 233 1.012671 CGCGCGCGCTAAAATTAGT 60.013 52.632 45.97 0.00 39.32 2.24
233 234 0.585519 CGCGCGCGCTAAAATTAGTT 60.586 50.000 45.97 0.00 39.32 2.24
234 235 1.530856 GCGCGCGCTAAAATTAGTTT 58.469 45.000 44.38 0.00 38.26 2.66
235 236 1.908889 GCGCGCGCTAAAATTAGTTTT 59.091 42.857 44.38 1.35 40.48 2.43
236 237 2.340283 GCGCGCGCTAAAATTAGTTTTT 59.660 40.909 44.38 0.00 40.59 1.94
252 253 2.060050 TTTTTCCCGCCTGTTGAAGA 57.940 45.000 0.00 0.00 0.00 2.87
253 254 2.060050 TTTTCCCGCCTGTTGAAGAA 57.940 45.000 0.00 0.00 0.00 2.52
254 255 1.314730 TTTCCCGCCTGTTGAAGAAC 58.685 50.000 0.00 0.00 0.00 3.01
255 256 0.181587 TTCCCGCCTGTTGAAGAACA 59.818 50.000 0.00 0.00 39.88 3.18
266 267 4.883083 TGTTGAAGAACAGCGAAGTATCT 58.117 39.130 0.00 0.00 37.15 1.98
267 268 4.923871 TGTTGAAGAACAGCGAAGTATCTC 59.076 41.667 0.00 0.00 37.15 2.75
268 269 4.111375 TGAAGAACAGCGAAGTATCTCC 57.889 45.455 0.00 0.00 0.00 3.71
269 270 3.119101 TGAAGAACAGCGAAGTATCTCCC 60.119 47.826 0.00 0.00 0.00 4.30
270 271 1.757699 AGAACAGCGAAGTATCTCCCC 59.242 52.381 0.00 0.00 0.00 4.81
271 272 0.460311 AACAGCGAAGTATCTCCCCG 59.540 55.000 0.00 0.00 0.00 5.73
272 273 1.300233 CAGCGAAGTATCTCCCCGC 60.300 63.158 0.00 0.00 45.39 6.13
273 274 2.029221 GCGAAGTATCTCCCCGCC 59.971 66.667 0.00 0.00 39.97 6.13
274 275 2.335369 CGAAGTATCTCCCCGCCG 59.665 66.667 0.00 0.00 0.00 6.46
275 276 2.029221 GAAGTATCTCCCCGCCGC 59.971 66.667 0.00 0.00 0.00 6.53
276 277 3.843117 GAAGTATCTCCCCGCCGCG 62.843 68.421 5.59 5.59 0.00 6.46
289 290 4.781959 CCGCGGTTGCCATTGCTG 62.782 66.667 19.50 0.00 38.08 4.41
292 293 3.682885 CGGTTGCCATTGCTGCCA 61.683 61.111 0.00 0.00 38.71 4.92
293 294 2.047939 GGTTGCCATTGCTGCCAC 60.048 61.111 0.00 0.00 38.71 5.01
294 295 2.431260 GTTGCCATTGCTGCCACG 60.431 61.111 0.00 0.00 38.71 4.94
295 296 4.360964 TTGCCATTGCTGCCACGC 62.361 61.111 0.00 0.00 38.71 5.34
318 319 3.723348 GGTCTGCGCCCACGTTTC 61.723 66.667 4.18 0.00 42.83 2.78
319 320 3.723348 GTCTGCGCCCACGTTTCC 61.723 66.667 4.18 0.00 42.83 3.13
447 460 1.602771 CCCTCTTCCGAGAAACCCC 59.397 63.158 0.00 0.00 39.74 4.95
604 642 1.529713 CCCTCCGGAGAGTCTAGGC 60.530 68.421 33.39 0.00 38.58 3.93
695 739 1.097232 TCGAGTTAATTCGCTCCGGA 58.903 50.000 14.87 2.93 40.29 5.14
773 927 1.243342 TTTCTTGCACGCCCCATGAG 61.243 55.000 0.00 0.00 0.00 2.90
774 928 2.046023 CTTGCACGCCCCATGAGA 60.046 61.111 0.00 0.00 0.00 3.27
776 930 1.926511 CTTGCACGCCCCATGAGAAC 61.927 60.000 0.00 0.00 0.00 3.01
968 1339 6.080648 TGCTTATGCTTTGATCCATTCATC 57.919 37.500 1.96 0.00 40.48 2.92
997 1377 8.126871 TCATGTTAGATTTCTATAACACGCAC 57.873 34.615 0.27 0.00 42.82 5.34
998 1378 6.563398 TGTTAGATTTCTATAACACGCACG 57.437 37.500 0.00 0.00 37.06 5.34
999 1379 5.005012 TGTTAGATTTCTATAACACGCACGC 59.995 40.000 0.00 0.00 37.06 5.34
1000 1380 3.517602 AGATTTCTATAACACGCACGCA 58.482 40.909 0.00 0.00 0.00 5.24
1001 1381 4.119862 AGATTTCTATAACACGCACGCAT 58.880 39.130 0.00 0.00 0.00 4.73
1002 1382 3.649870 TTTCTATAACACGCACGCATG 57.350 42.857 0.00 0.00 0.00 4.06
1061 1441 2.026636 GTCCCATGCACTTTACCCACTA 60.027 50.000 0.00 0.00 0.00 2.74
1143 1523 2.854777 CGTCAAGCTCGTGGAGATAAAG 59.145 50.000 0.00 0.00 0.00 1.85
1277 1657 6.306987 TCAGTCAGGATGTATGTATGCTAGA 58.693 40.000 0.00 0.00 37.40 2.43
1360 1770 2.029290 TCCGTACTTGTCTTCTCTTGCC 60.029 50.000 0.00 0.00 0.00 4.52
1379 1789 6.542005 TCTTGCCGTCATATTGTGTCAATTAT 59.458 34.615 0.37 0.00 0.00 1.28
1417 1845 9.468532 AGATGTTTTGTTCTTTTAGAATTGCTC 57.531 29.630 0.00 0.00 36.50 4.26
1521 2070 7.751732 TGATGATGTTTACTTTGAAATCGAGG 58.248 34.615 0.00 0.00 0.00 4.63
1610 2436 2.038557 AGGACGTACCATTTGCTTCAGT 59.961 45.455 0.00 0.00 42.04 3.41
1677 2503 1.212688 CTGTCCAGGCCACCATATTGA 59.787 52.381 5.01 0.00 0.00 2.57
1679 2505 0.183492 TCCAGGCCACCATATTGAGC 59.817 55.000 5.01 0.00 0.00 4.26
1728 2554 1.206132 TCGATTATGGCGGTCAAGTGT 59.794 47.619 0.00 0.00 0.00 3.55
1745 2571 1.002430 GTGTCTTGCCTCTCACCATCA 59.998 52.381 0.00 0.00 0.00 3.07
1798 2624 3.965347 ACTTATACTACTCATGCCCCGTT 59.035 43.478 0.00 0.00 0.00 4.44
1799 2625 2.910688 ATACTACTCATGCCCCGTTG 57.089 50.000 0.00 0.00 0.00 4.10
1812 2638 1.604604 CCCGTTGATGGAAGTTGTGT 58.395 50.000 0.00 0.00 0.00 3.72
1818 2644 4.432712 GTTGATGGAAGTTGTGTTGCTTT 58.567 39.130 0.00 0.00 0.00 3.51
1909 2735 3.078891 AGAATTGGAAGGAAGCCTGAC 57.921 47.619 0.00 0.00 32.13 3.51
1910 2736 1.740025 GAATTGGAAGGAAGCCTGACG 59.260 52.381 0.00 0.00 32.13 4.35
1940 2766 2.426842 AAGCCTACTTGGAATCTGGC 57.573 50.000 0.00 0.00 40.54 4.85
1947 2773 3.032017 ACTTGGAATCTGGCGATATCG 57.968 47.619 20.79 20.79 43.27 2.92
1948 2774 2.365617 ACTTGGAATCTGGCGATATCGT 59.634 45.455 24.99 5.16 42.22 3.73
1980 2806 0.033366 GGTTTGCTTCACGCCCAAAT 59.967 50.000 0.00 0.00 38.05 2.32
2149 5392 1.888512 CAGTGGGTTGGGAGTTTGATG 59.111 52.381 0.00 0.00 0.00 3.07
2150 5393 1.780309 AGTGGGTTGGGAGTTTGATGA 59.220 47.619 0.00 0.00 0.00 2.92
2239 8404 5.326069 ACTTAGTGCTCTTTCCTCTCTACA 58.674 41.667 0.00 0.00 0.00 2.74
2243 8408 4.081752 AGTGCTCTTTCCTCTCTACATGTG 60.082 45.833 9.11 0.00 0.00 3.21
2244 8409 4.081972 GTGCTCTTTCCTCTCTACATGTGA 60.082 45.833 9.11 3.24 0.00 3.58
2245 8410 4.081972 TGCTCTTTCCTCTCTACATGTGAC 60.082 45.833 9.11 0.00 0.00 3.67
2246 8411 4.679372 GCTCTTTCCTCTCTACATGTGACC 60.679 50.000 9.11 0.00 0.00 4.02
2247 8412 4.678256 TCTTTCCTCTCTACATGTGACCT 58.322 43.478 9.11 0.00 0.00 3.85
2248 8413 5.827756 TCTTTCCTCTCTACATGTGACCTA 58.172 41.667 9.11 0.00 0.00 3.08
2249 8414 6.436027 TCTTTCCTCTCTACATGTGACCTAT 58.564 40.000 9.11 0.00 0.00 2.57
2250 8415 6.897966 TCTTTCCTCTCTACATGTGACCTATT 59.102 38.462 9.11 0.00 0.00 1.73
2251 8416 8.059461 TCTTTCCTCTCTACATGTGACCTATTA 58.941 37.037 9.11 0.00 0.00 0.98
2252 8417 8.603898 TTTCCTCTCTACATGTGACCTATTAA 57.396 34.615 9.11 0.00 0.00 1.40
2253 8418 8.783660 TTCCTCTCTACATGTGACCTATTAAT 57.216 34.615 9.11 0.00 0.00 1.40
2254 8419 8.183104 TCCTCTCTACATGTGACCTATTAATG 57.817 38.462 9.11 0.00 0.00 1.90
2255 8420 7.785028 TCCTCTCTACATGTGACCTATTAATGT 59.215 37.037 9.11 0.00 35.70 2.71
2256 8421 9.078990 CCTCTCTACATGTGACCTATTAATGTA 57.921 37.037 9.11 0.00 33.67 2.29
2263 8428 9.330063 ACATGTGACCTATTAATGTATCAGTTG 57.670 33.333 0.00 2.83 29.93 3.16
2264 8429 9.330063 CATGTGACCTATTAATGTATCAGTTGT 57.670 33.333 0.00 0.00 0.00 3.32
2265 8430 8.716646 TGTGACCTATTAATGTATCAGTTGTG 57.283 34.615 0.00 0.00 0.00 3.33
2266 8431 8.318412 TGTGACCTATTAATGTATCAGTTGTGT 58.682 33.333 0.00 0.00 0.00 3.72
2267 8432 8.604035 GTGACCTATTAATGTATCAGTTGTGTG 58.396 37.037 0.00 0.00 0.00 3.82
2268 8433 7.279981 TGACCTATTAATGTATCAGTTGTGTGC 59.720 37.037 0.00 0.00 0.00 4.57
2269 8434 7.338710 ACCTATTAATGTATCAGTTGTGTGCT 58.661 34.615 0.00 0.00 0.00 4.40
2270 8435 7.495934 ACCTATTAATGTATCAGTTGTGTGCTC 59.504 37.037 0.00 0.00 0.00 4.26
2271 8436 7.712639 CCTATTAATGTATCAGTTGTGTGCTCT 59.287 37.037 0.00 0.00 0.00 4.09
2272 8437 6.726258 TTAATGTATCAGTTGTGTGCTCTG 57.274 37.500 0.00 0.00 0.00 3.35
2273 8438 3.751479 TGTATCAGTTGTGTGCTCTGT 57.249 42.857 0.00 0.00 0.00 3.41
2274 8439 4.864704 TGTATCAGTTGTGTGCTCTGTA 57.135 40.909 0.00 0.00 0.00 2.74
2275 8440 5.208463 TGTATCAGTTGTGTGCTCTGTAA 57.792 39.130 0.00 0.00 0.00 2.41
2276 8441 5.793817 TGTATCAGTTGTGTGCTCTGTAAT 58.206 37.500 0.00 0.00 0.00 1.89
2277 8442 5.639082 TGTATCAGTTGTGTGCTCTGTAATG 59.361 40.000 0.00 0.00 0.00 1.90
2278 8443 2.807967 TCAGTTGTGTGCTCTGTAATGC 59.192 45.455 0.00 0.00 0.00 3.56
2279 8444 2.095567 CAGTTGTGTGCTCTGTAATGCC 60.096 50.000 0.00 0.00 0.00 4.40
2280 8445 2.154462 GTTGTGTGCTCTGTAATGCCT 58.846 47.619 0.00 0.00 0.00 4.75
2281 8446 2.099141 TGTGTGCTCTGTAATGCCTC 57.901 50.000 0.00 0.00 0.00 4.70
2282 8447 1.625315 TGTGTGCTCTGTAATGCCTCT 59.375 47.619 0.00 0.00 0.00 3.69
2283 8448 2.831526 TGTGTGCTCTGTAATGCCTCTA 59.168 45.455 0.00 0.00 0.00 2.43
2284 8449 3.260632 TGTGTGCTCTGTAATGCCTCTAA 59.739 43.478 0.00 0.00 0.00 2.10
2285 8450 4.253685 GTGTGCTCTGTAATGCCTCTAAA 58.746 43.478 0.00 0.00 0.00 1.85
2286 8451 4.093556 GTGTGCTCTGTAATGCCTCTAAAC 59.906 45.833 0.00 0.00 0.00 2.01
2287 8452 4.020218 TGTGCTCTGTAATGCCTCTAAACT 60.020 41.667 0.00 0.00 0.00 2.66
2288 8453 4.331168 GTGCTCTGTAATGCCTCTAAACTG 59.669 45.833 0.00 0.00 0.00 3.16
2289 8454 4.222810 TGCTCTGTAATGCCTCTAAACTGA 59.777 41.667 0.00 0.00 0.00 3.41
2290 8455 5.178797 GCTCTGTAATGCCTCTAAACTGAA 58.821 41.667 0.00 0.00 0.00 3.02
2291 8456 5.643777 GCTCTGTAATGCCTCTAAACTGAAA 59.356 40.000 0.00 0.00 0.00 2.69
2329 8561 6.665474 TTGCTAACACTTAGTTGTTTCGAA 57.335 33.333 0.00 0.00 41.50 3.71
2337 8569 8.168681 ACACTTAGTTGTTTCGAATTGTTTTG 57.831 30.769 0.00 0.00 0.00 2.44
2347 8579 8.324567 TGTTTCGAATTGTTTTGCTTCAAATAC 58.675 29.630 0.00 0.00 33.19 1.89
2474 8710 5.936686 ATGTGTTCACTCATTTCAGACTG 57.063 39.130 0.00 0.00 0.00 3.51
2479 8715 6.093219 GTGTTCACTCATTTCAGACTGCATAT 59.907 38.462 0.00 0.00 0.00 1.78
2507 8743 8.023128 GTCCATATTGAAATATCCAAACCATCG 58.977 37.037 0.00 0.00 29.35 3.84
2520 8758 7.315247 TCCAAACCATCGTATATTTGTGAAG 57.685 36.000 0.00 0.00 31.48 3.02
2521 8759 6.317642 TCCAAACCATCGTATATTTGTGAAGG 59.682 38.462 0.00 0.00 31.48 3.46
2522 8760 6.317642 CCAAACCATCGTATATTTGTGAAGGA 59.682 38.462 0.00 0.00 31.48 3.36
2531 8769 7.289317 TCGTATATTTGTGAAGGAAGGGAGTAT 59.711 37.037 0.00 0.00 0.00 2.12
2532 8770 8.582437 CGTATATTTGTGAAGGAAGGGAGTATA 58.418 37.037 0.00 0.00 0.00 1.47
2533 8771 9.708092 GTATATTTGTGAAGGAAGGGAGTATAC 57.292 37.037 0.00 0.00 0.00 1.47
2550 8799 8.138712 GGGAGTATACTATATAAGAGCATGCAC 58.861 40.741 21.98 14.59 0.00 4.57
2962 9813 9.125026 ACATCATAGATCGTACATGCATATAGA 57.875 33.333 0.00 0.00 0.00 1.98
2965 9816 8.571336 TCATAGATCGTACATGCATATAGATGG 58.429 37.037 0.00 0.00 33.26 3.51
2967 9818 7.036996 AGATCGTACATGCATATAGATGGAG 57.963 40.000 0.00 0.00 36.77 3.86
2968 9819 5.582689 TCGTACATGCATATAGATGGAGG 57.417 43.478 0.00 1.79 40.61 4.30
2969 9820 4.402474 TCGTACATGCATATAGATGGAGGG 59.598 45.833 8.35 0.73 39.27 4.30
2970 9821 4.442052 CGTACATGCATATAGATGGAGGGG 60.442 50.000 8.35 0.00 39.27 4.79
2971 9822 2.848694 ACATGCATATAGATGGAGGGGG 59.151 50.000 8.35 0.00 39.27 5.40
3029 12504 5.715753 ACTTTCGAGGTTAAGAGTATGGACT 59.284 40.000 1.68 0.00 39.20 3.85
3108 12586 1.227089 CTGCCGAGAGAATGGACGG 60.227 63.158 0.00 0.00 46.74 4.79
3144 12622 6.783708 ACCATCTAGTTCTCTCCAACTAAG 57.216 41.667 0.00 0.00 38.20 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.741221 CAAGGCGTGCTAGTTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
54 55 1.302832 CAGAAAGGCGGCTTGGACT 60.303 57.895 26.23 20.24 0.00 3.85
149 150 1.224592 GATCCGTGTTGGGCTGGAT 59.775 57.895 0.00 0.00 43.75 3.41
165 166 0.103208 GGAAGATCTGTGTCGGCGAT 59.897 55.000 14.79 0.00 0.00 4.58
170 171 1.874019 CGCGGGAAGATCTGTGTCG 60.874 63.158 0.00 0.00 0.00 4.35
175 176 2.587194 CCTGCGCGGGAAGATCTG 60.587 66.667 32.31 0.00 0.00 2.90
176 177 4.537433 GCCTGCGCGGGAAGATCT 62.537 66.667 39.24 0.00 0.00 2.75
193 194 2.252260 CAGTTTGGCGTGCTTCCG 59.748 61.111 0.00 0.00 0.00 4.30
194 195 2.130073 GACCAGTTTGGCGTGCTTCC 62.130 60.000 0.00 0.00 42.67 3.46
195 196 1.282875 GACCAGTTTGGCGTGCTTC 59.717 57.895 0.00 0.00 42.67 3.86
196 197 2.193536 GGACCAGTTTGGCGTGCTT 61.194 57.895 0.00 0.00 42.67 3.91
197 198 2.594592 GGACCAGTTTGGCGTGCT 60.595 61.111 0.00 0.00 42.67 4.40
198 199 4.025401 CGGACCAGTTTGGCGTGC 62.025 66.667 0.00 0.00 42.67 5.34
199 200 4.025401 GCGGACCAGTTTGGCGTG 62.025 66.667 0.00 0.00 42.67 5.34
214 215 3.585144 AAAACTAATTTTAGCGCGCGCG 61.585 45.455 45.73 45.73 36.22 6.86
215 216 1.530856 AAACTAATTTTAGCGCGCGC 58.469 45.000 45.10 45.10 42.33 6.86
233 234 2.060050 TCTTCAACAGGCGGGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
234 235 1.679153 GTTCTTCAACAGGCGGGAAAA 59.321 47.619 0.00 0.00 32.14 2.29
235 236 1.314730 GTTCTTCAACAGGCGGGAAA 58.685 50.000 0.00 0.00 32.14 3.13
236 237 0.181587 TGTTCTTCAACAGGCGGGAA 59.818 50.000 0.00 0.00 37.61 3.97
237 238 1.833606 TGTTCTTCAACAGGCGGGA 59.166 52.632 0.00 0.00 37.61 5.14
238 239 4.473643 TGTTCTTCAACAGGCGGG 57.526 55.556 0.00 0.00 37.61 6.13
244 245 4.883083 AGATACTTCGCTGTTCTTCAACA 58.117 39.130 0.00 0.00 40.40 3.33
245 246 4.327627 GGAGATACTTCGCTGTTCTTCAAC 59.672 45.833 0.00 0.00 0.00 3.18
246 247 4.495422 GGAGATACTTCGCTGTTCTTCAA 58.505 43.478 0.00 0.00 0.00 2.69
247 248 3.119101 GGGAGATACTTCGCTGTTCTTCA 60.119 47.826 0.00 0.00 0.00 3.02
248 249 3.449632 GGGAGATACTTCGCTGTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
249 250 2.168728 GGGGAGATACTTCGCTGTTCTT 59.831 50.000 0.00 0.00 0.00 2.52
250 251 1.757699 GGGGAGATACTTCGCTGTTCT 59.242 52.381 0.00 0.00 0.00 3.01
251 252 1.536284 CGGGGAGATACTTCGCTGTTC 60.536 57.143 0.00 0.00 33.18 3.18
252 253 0.460311 CGGGGAGATACTTCGCTGTT 59.540 55.000 0.00 0.00 33.18 3.16
253 254 2.017559 GCGGGGAGATACTTCGCTGT 62.018 60.000 0.00 0.00 42.62 4.40
254 255 1.300233 GCGGGGAGATACTTCGCTG 60.300 63.158 0.00 0.00 42.62 5.18
255 256 2.499827 GGCGGGGAGATACTTCGCT 61.500 63.158 0.00 0.00 44.88 4.93
256 257 2.029221 GGCGGGGAGATACTTCGC 59.971 66.667 0.00 0.00 44.80 4.70
257 258 2.335369 CGGCGGGGAGATACTTCG 59.665 66.667 0.00 0.00 0.00 3.79
258 259 2.029221 GCGGCGGGGAGATACTTC 59.971 66.667 9.78 0.00 0.00 3.01
259 260 3.912907 CGCGGCGGGGAGATACTT 61.913 66.667 15.84 0.00 0.00 2.24
272 273 4.781959 CAGCAATGGCAACCGCGG 62.782 66.667 26.86 26.86 44.61 6.46
275 276 3.682885 TGGCAGCAATGGCAACCG 61.683 61.111 1.61 0.00 44.61 4.44
276 277 2.047939 GTGGCAGCAATGGCAACC 60.048 61.111 6.03 0.00 45.89 3.77
277 278 2.431260 CGTGGCAGCAATGGCAAC 60.431 61.111 6.03 0.00 45.89 4.17
278 279 4.360964 GCGTGGCAGCAATGGCAA 62.361 61.111 6.03 0.00 45.89 4.52
302 303 3.723348 GGAAACGTGGGCGCAGAC 61.723 66.667 10.83 3.46 42.83 3.51
327 328 4.622456 AAAACAAGCGCGTGCCCG 62.622 61.111 23.44 11.68 44.31 6.13
328 329 2.279186 AAAAACAAGCGCGTGCCC 60.279 55.556 23.44 0.00 44.31 5.36
695 739 2.632996 TGTGGACTCACGAGATTTCCTT 59.367 45.455 0.00 0.00 46.42 3.36
773 927 3.735237 TTGCCTCTATCCATCTCGTTC 57.265 47.619 0.00 0.00 0.00 3.95
774 928 4.636249 GATTTGCCTCTATCCATCTCGTT 58.364 43.478 0.00 0.00 0.00 3.85
776 930 3.249091 CGATTTGCCTCTATCCATCTCG 58.751 50.000 0.00 0.00 0.00 4.04
997 1377 1.069022 CCAAACAGAAGTCCACATGCG 60.069 52.381 0.00 0.00 0.00 4.73
998 1378 1.956477 ACCAAACAGAAGTCCACATGC 59.044 47.619 0.00 0.00 0.00 4.06
999 1379 3.243501 CCAACCAAACAGAAGTCCACATG 60.244 47.826 0.00 0.00 0.00 3.21
1000 1380 2.958355 CCAACCAAACAGAAGTCCACAT 59.042 45.455 0.00 0.00 0.00 3.21
1001 1381 2.291282 ACCAACCAAACAGAAGTCCACA 60.291 45.455 0.00 0.00 0.00 4.17
1002 1382 2.099098 CACCAACCAAACAGAAGTCCAC 59.901 50.000 0.00 0.00 0.00 4.02
1061 1441 2.347490 GGTCGCATCCAGGTGTGT 59.653 61.111 0.00 0.00 0.00 3.72
1417 1845 2.070783 ACCAAACACGCCATTAGTACG 58.929 47.619 0.00 0.00 0.00 3.67
1521 2070 9.093970 AGACAATGTTTTGCCTTTTACTTTTAC 57.906 29.630 0.00 0.00 36.22 2.01
1728 2554 0.247460 CGTGATGGTGAGAGGCAAGA 59.753 55.000 0.00 0.00 0.00 3.02
1745 2571 3.132289 CACCAGTGACCTTATATGTCCGT 59.868 47.826 0.00 0.00 31.60 4.69
1798 2624 3.953612 AGAAAGCAACACAACTTCCATCA 59.046 39.130 0.00 0.00 0.00 3.07
1799 2625 4.574599 AGAAAGCAACACAACTTCCATC 57.425 40.909 0.00 0.00 0.00 3.51
1812 2638 3.462483 TCTACCACGTGAAGAAAGCAA 57.538 42.857 19.30 0.00 0.00 3.91
1818 2644 3.119245 GGCATAGTTCTACCACGTGAAGA 60.119 47.826 19.30 16.28 0.00 2.87
1909 2735 3.247006 AGTAGGCTTGTATGACAACCG 57.753 47.619 0.00 0.00 35.71 4.44
1910 2736 4.946784 CAAGTAGGCTTGTATGACAACC 57.053 45.455 0.00 0.00 45.18 3.77
1930 2756 1.960689 TGACGATATCGCCAGATTCCA 59.039 47.619 24.59 7.34 44.43 3.53
1931 2757 2.288213 TGTGACGATATCGCCAGATTCC 60.288 50.000 24.59 8.38 44.43 3.01
1954 2780 2.163818 CGTGAAGCAAACCTCACCTA 57.836 50.000 0.00 0.00 0.00 3.08
1980 2806 6.544928 TGTCTCCTGACTTATATTGCAAGA 57.455 37.500 4.94 0.00 43.29 3.02
2030 4638 2.496470 GACGGTAATCTCCACTTCCACT 59.504 50.000 0.00 0.00 0.00 4.00
2173 5416 1.153188 CTGCCCATCACCGCATACA 60.153 57.895 0.00 0.00 33.78 2.29
2174 5417 0.748005 AACTGCCCATCACCGCATAC 60.748 55.000 0.00 0.00 33.78 2.39
2179 5422 0.958091 TTCAAAACTGCCCATCACCG 59.042 50.000 0.00 0.00 0.00 4.94
2182 5425 1.999648 AGCTTCAAAACTGCCCATCA 58.000 45.000 0.00 0.00 0.00 3.07
2183 5426 2.297033 TGAAGCTTCAAAACTGCCCATC 59.703 45.455 26.61 0.00 33.55 3.51
2239 8404 9.330063 CACAACTGATACATTAATAGGTCACAT 57.670 33.333 0.00 0.00 0.00 3.21
2243 8408 7.495934 AGCACACAACTGATACATTAATAGGTC 59.504 37.037 0.00 0.00 0.00 3.85
2244 8409 7.338710 AGCACACAACTGATACATTAATAGGT 58.661 34.615 0.00 0.00 0.00 3.08
2245 8410 7.712639 AGAGCACACAACTGATACATTAATAGG 59.287 37.037 0.00 0.00 0.00 2.57
2246 8411 8.546244 CAGAGCACACAACTGATACATTAATAG 58.454 37.037 0.00 0.00 34.07 1.73
2247 8412 8.040727 ACAGAGCACACAACTGATACATTAATA 58.959 33.333 0.00 0.00 35.85 0.98
2248 8413 6.881065 ACAGAGCACACAACTGATACATTAAT 59.119 34.615 0.00 0.00 35.85 1.40
2249 8414 6.230472 ACAGAGCACACAACTGATACATTAA 58.770 36.000 0.00 0.00 35.85 1.40
2250 8415 5.793817 ACAGAGCACACAACTGATACATTA 58.206 37.500 0.00 0.00 35.85 1.90
2251 8416 4.645535 ACAGAGCACACAACTGATACATT 58.354 39.130 0.00 0.00 35.85 2.71
2252 8417 4.277515 ACAGAGCACACAACTGATACAT 57.722 40.909 0.00 0.00 35.85 2.29
2253 8418 3.751479 ACAGAGCACACAACTGATACA 57.249 42.857 0.00 0.00 35.85 2.29
2254 8419 5.446473 GCATTACAGAGCACACAACTGATAC 60.446 44.000 0.00 0.00 35.85 2.24
2255 8420 4.631377 GCATTACAGAGCACACAACTGATA 59.369 41.667 0.00 0.00 35.85 2.15
2256 8421 3.438087 GCATTACAGAGCACACAACTGAT 59.562 43.478 0.00 0.00 35.85 2.90
2257 8422 2.807967 GCATTACAGAGCACACAACTGA 59.192 45.455 0.00 0.00 35.85 3.41
2258 8423 2.095567 GGCATTACAGAGCACACAACTG 60.096 50.000 0.00 0.00 37.62 3.16
2259 8424 2.154462 GGCATTACAGAGCACACAACT 58.846 47.619 0.00 0.00 0.00 3.16
2260 8425 2.154462 AGGCATTACAGAGCACACAAC 58.846 47.619 0.00 0.00 0.00 3.32
2261 8426 2.038952 AGAGGCATTACAGAGCACACAA 59.961 45.455 0.00 0.00 0.00 3.33
2262 8427 1.625315 AGAGGCATTACAGAGCACACA 59.375 47.619 0.00 0.00 0.00 3.72
2263 8428 2.393271 AGAGGCATTACAGAGCACAC 57.607 50.000 0.00 0.00 0.00 3.82
2264 8429 4.020218 AGTTTAGAGGCATTACAGAGCACA 60.020 41.667 0.00 0.00 0.00 4.57
2265 8430 4.331168 CAGTTTAGAGGCATTACAGAGCAC 59.669 45.833 0.00 0.00 0.00 4.40
2266 8431 4.222810 TCAGTTTAGAGGCATTACAGAGCA 59.777 41.667 0.00 0.00 0.00 4.26
2267 8432 4.759782 TCAGTTTAGAGGCATTACAGAGC 58.240 43.478 0.00 0.00 0.00 4.09
2268 8433 7.856145 ATTTCAGTTTAGAGGCATTACAGAG 57.144 36.000 0.00 0.00 0.00 3.35
2269 8434 9.905713 ATAATTTCAGTTTAGAGGCATTACAGA 57.094 29.630 0.00 0.00 0.00 3.41
2270 8435 9.941664 CATAATTTCAGTTTAGAGGCATTACAG 57.058 33.333 0.00 0.00 0.00 2.74
2271 8436 9.461312 ACATAATTTCAGTTTAGAGGCATTACA 57.539 29.630 0.00 0.00 0.00 2.41
2272 8437 9.722056 CACATAATTTCAGTTTAGAGGCATTAC 57.278 33.333 0.00 0.00 0.00 1.89
2273 8438 8.405531 GCACATAATTTCAGTTTAGAGGCATTA 58.594 33.333 0.00 0.00 0.00 1.90
2274 8439 7.260603 GCACATAATTTCAGTTTAGAGGCATT 58.739 34.615 0.00 0.00 0.00 3.56
2275 8440 6.183360 GGCACATAATTTCAGTTTAGAGGCAT 60.183 38.462 0.00 0.00 0.00 4.40
2276 8441 5.125417 GGCACATAATTTCAGTTTAGAGGCA 59.875 40.000 0.00 0.00 0.00 4.75
2277 8442 5.125417 TGGCACATAATTTCAGTTTAGAGGC 59.875 40.000 0.00 0.00 0.00 4.70
2278 8443 6.757897 TGGCACATAATTTCAGTTTAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
2279 8444 9.643693 AATTTGGCACATAATTTCAGTTTAGAG 57.356 29.630 0.00 0.00 39.30 2.43
2280 8445 9.995003 AAATTTGGCACATAATTTCAGTTTAGA 57.005 25.926 3.18 0.00 39.30 2.10
2283 8448 7.861872 GCAAAATTTGGCACATAATTTCAGTTT 59.138 29.630 12.87 0.00 37.73 2.66
2284 8449 7.229106 AGCAAAATTTGGCACATAATTTCAGTT 59.771 29.630 19.63 2.09 37.73 3.16
2285 8450 6.711645 AGCAAAATTTGGCACATAATTTCAGT 59.288 30.769 19.63 0.00 37.73 3.41
2286 8451 7.136289 AGCAAAATTTGGCACATAATTTCAG 57.864 32.000 19.63 6.44 37.73 3.02
2287 8452 8.502387 GTTAGCAAAATTTGGCACATAATTTCA 58.498 29.630 19.63 0.00 37.73 2.69
2288 8453 8.502387 TGTTAGCAAAATTTGGCACATAATTTC 58.498 29.630 19.63 0.18 37.73 2.17
2289 8454 8.288913 GTGTTAGCAAAATTTGGCACATAATTT 58.711 29.630 19.63 3.18 39.10 1.82
2290 8455 7.661027 AGTGTTAGCAAAATTTGGCACATAATT 59.339 29.630 19.63 0.00 39.30 1.40
2291 8456 7.160726 AGTGTTAGCAAAATTTGGCACATAAT 58.839 30.769 19.63 0.26 39.30 1.28
2329 8561 5.402270 GTGCTCGTATTTGAAGCAAAACAAT 59.598 36.000 0.00 0.00 36.90 2.71
2337 8569 3.933332 ACTTAGGTGCTCGTATTTGAAGC 59.067 43.478 0.00 0.00 0.00 3.86
2347 8579 2.959516 TGTGATTCACTTAGGTGCTCG 58.040 47.619 17.26 0.00 42.72 5.03
2454 8690 3.561310 TGCAGTCTGAAATGAGTGAACAC 59.439 43.478 3.32 0.00 39.14 3.32
2474 8710 8.523915 TGGATATTTCAATATGGACCATATGC 57.476 34.615 24.69 10.26 37.17 3.14
2479 8715 7.128751 TGGTTTGGATATTTCAATATGGACCA 58.871 34.615 0.00 0.00 31.96 4.02
2502 8738 5.470098 CCCTTCCTTCACAAATATACGATGG 59.530 44.000 0.00 0.00 0.00 3.51
2507 8743 9.708092 GTATACTCCCTTCCTTCACAAATATAC 57.292 37.037 0.00 0.00 0.00 1.47
2520 8758 9.649316 ATGCTCTTATATAGTATACTCCCTTCC 57.351 37.037 9.12 0.00 0.00 3.46
2522 8760 8.919145 GCATGCTCTTATATAGTATACTCCCTT 58.081 37.037 11.37 0.00 0.00 3.95
2531 8769 8.802267 TGTATGTGTGCATGCTCTTATATAGTA 58.198 33.333 20.33 0.00 38.33 1.82
2532 8770 7.670364 TGTATGTGTGCATGCTCTTATATAGT 58.330 34.615 20.33 0.68 38.33 2.12
2533 8771 8.538409 TTGTATGTGTGCATGCTCTTATATAG 57.462 34.615 20.33 0.00 38.33 1.31
2550 8799 8.383175 ACCCCAATAGGTAATATCTTGTATGTG 58.617 37.037 0.00 0.00 38.79 3.21
3108 12586 6.540189 AGAACTAGATGGTTGATTATGCACAC 59.460 38.462 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.