Multiple sequence alignment - TraesCS2D01G119700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G119700 chr2D 100.000 2565 0 0 1 2565 68925295 68922731 0.000000e+00 4737.0
1 TraesCS2D01G119700 chr2D 100.000 1953 0 0 2851 4803 68922445 68920493 0.000000e+00 3607.0
2 TraesCS2D01G119700 chr2D 84.138 580 72 15 1921 2487 68923303 68922731 1.180000e-150 544.0
3 TraesCS2D01G119700 chr2D 84.138 580 72 15 1993 2565 68923375 68922809 1.180000e-150 544.0
4 TraesCS2D01G119700 chr2D 84.476 496 62 7 1226 1721 22503109 22503589 4.350000e-130 475.0
5 TraesCS2D01G119700 chr2D 82.353 170 27 1 2365 2531 68922406 68922237 1.390000e-30 145.0
6 TraesCS2D01G119700 chr2D 82.353 170 27 1 2890 3059 68922931 68922765 1.390000e-30 145.0
7 TraesCS2D01G119700 chr2D 80.105 191 32 4 2311 2497 68922421 68922233 2.330000e-28 137.0
8 TraesCS2D01G119700 chr2D 80.105 191 32 4 2875 3063 68922985 68922799 2.330000e-28 137.0
9 TraesCS2D01G119700 chr2A 88.040 1714 158 26 835 2513 65822597 65820896 0.000000e+00 1986.0
10 TraesCS2D01G119700 chr2A 88.502 1609 128 25 2876 4441 65820517 65818923 0.000000e+00 1893.0
11 TraesCS2D01G119700 chr2A 84.676 633 77 16 1943 2565 65821544 65820922 8.830000e-172 614.0
12 TraesCS2D01G119700 chr2A 85.468 523 60 10 1226 1746 24300484 24300992 9.150000e-147 531.0
13 TraesCS2D01G119700 chr2A 89.677 310 32 0 2231 2540 65821217 65820908 3.480000e-106 396.0
14 TraesCS2D01G119700 chr2A 85.445 371 33 9 1 351 65823575 65823206 2.730000e-97 366.0
15 TraesCS2D01G119700 chr2A 78.075 561 97 21 2015 2565 65821544 65821000 9.960000e-87 331.0
16 TraesCS2D01G119700 chr2A 96.739 184 6 0 4620 4803 98897413 98897596 1.680000e-79 307.0
17 TraesCS2D01G119700 chr2A 89.552 201 18 1 1921 2118 65821425 65821225 7.980000e-63 252.0
18 TraesCS2D01G119700 chr2A 88.344 163 7 4 692 854 65822785 65822635 8.210000e-43 185.0
19 TraesCS2D01G119700 chr2A 88.889 135 13 2 4489 4621 65818660 65818526 1.070000e-36 165.0
20 TraesCS2D01G119700 chr2A 83.432 169 25 1 2898 3066 65821075 65820910 2.310000e-33 154.0
21 TraesCS2D01G119700 chr2A 77.344 256 53 3 2851 3105 65821161 65820910 3.870000e-31 147.0
22 TraesCS2D01G119700 chr2A 79.688 192 29 4 2876 3063 65821175 65820990 3.900000e-26 130.0
23 TraesCS2D01G119700 chr2A 89.583 96 7 2 2473 2565 65820515 65820420 8.440000e-23 119.0
24 TraesCS2D01G119700 chr2B 88.023 1553 138 31 1049 2565 101489520 101487980 0.000000e+00 1794.0
25 TraesCS2D01G119700 chr2B 87.915 1415 117 27 2927 4304 101487624 101486227 0.000000e+00 1616.0
26 TraesCS2D01G119700 chr2B 83.968 630 84 14 1943 2565 101488677 101488058 5.350000e-164 588.0
27 TraesCS2D01G119700 chr2B 92.857 364 23 2 2205 2565 101488382 101488019 4.260000e-145 525.0
28 TraesCS2D01G119700 chr2B 83.544 474 33 20 167 615 101491095 101490642 7.490000e-108 401.0
29 TraesCS2D01G119700 chr2B 78.214 560 95 22 2015 2565 101488677 101488136 2.770000e-87 333.0
30 TraesCS2D01G119700 chr2B 96.196 184 7 0 4620 4803 94937270 94937453 7.810000e-78 302.0
31 TraesCS2D01G119700 chr2B 74.426 610 111 34 2890 3475 101487622 101487034 2.250000e-53 220.0
32 TraesCS2D01G119700 chr2B 82.470 251 30 9 2322 2565 101488340 101488097 1.750000e-49 207.0
33 TraesCS2D01G119700 chr2B 85.484 186 11 7 1 170 101494347 101494162 3.820000e-41 180.0
34 TraesCS2D01G119700 chr2B 76.923 234 43 5 2876 3105 101488311 101488085 6.530000e-24 122.0
35 TraesCS2D01G119700 chr2B 81.967 122 19 2 935 1056 101489811 101489693 3.060000e-17 100.0
36 TraesCS2D01G119700 chr2B 89.189 74 7 1 4549 4621 101458850 101458777 1.840000e-14 91.6
37 TraesCS2D01G119700 chr5B 97.283 184 5 0 4620 4803 646377957 646377774 3.610000e-81 313.0
38 TraesCS2D01G119700 chr5B 96.739 184 5 1 4621 4803 568185611 568185794 6.040000e-79 305.0
39 TraesCS2D01G119700 chrUn 96.721 183 6 0 4621 4803 8098797 8098615 6.040000e-79 305.0
40 TraesCS2D01G119700 chrUn 95.745 188 7 1 4617 4803 51420757 51420570 7.810000e-78 302.0
41 TraesCS2D01G119700 chr5D 96.739 184 5 1 4620 4803 535902200 535902018 6.040000e-79 305.0
42 TraesCS2D01G119700 chr7B 96.216 185 6 1 4620 4803 31555661 31555845 7.810000e-78 302.0
43 TraesCS2D01G119700 chr1D 95.745 188 7 1 4616 4803 491721471 491721657 7.810000e-78 302.0
44 TraesCS2D01G119700 chr3D 74.328 335 67 13 1221 1553 555454756 555454439 1.810000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G119700 chr2D 68920493 68925295 4802 True 1249.500000 4737 86.649000 1 4803 8 chr2D.!!$R1 4802
1 TraesCS2D01G119700 chr2A 24300484 24300992 508 False 531.000000 531 85.468000 1226 1746 1 chr2A.!!$F1 520
2 TraesCS2D01G119700 chr2A 65818526 65823575 5049 True 518.307692 1986 85.480538 1 4621 13 chr2A.!!$R1 4620
3 TraesCS2D01G119700 chr2B 101486227 101494347 8120 True 553.272727 1794 83.253727 1 4304 11 chr2B.!!$R2 4303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 65 0.036388 TCGCAGAGAAAAGCCGGATT 60.036 50.0 5.05 0.00 0.00 3.01 F
1047 4927 0.597637 GTGTCTATGACGATGCCCCG 60.598 60.0 0.00 0.00 34.95 5.73 F
1849 5919 0.322456 TGCAAAATCAGCCGGCTACT 60.322 50.0 32.30 17.04 0.00 2.57 F
2194 6267 0.320508 GCCGTCTCCGAAACCTTCTT 60.321 55.0 0.00 0.00 35.63 2.52 F
2307 6419 0.685097 CTTCTCCCAAACCAGTCGGA 59.315 55.0 0.00 0.00 35.59 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 5906 0.107456 CATCCAAGTAGCCGGCTGAT 59.893 55.0 38.98 27.47 0.00 2.90 R
1929 5999 0.390735 CATGCCCTTCTTGCTTTGCC 60.391 55.0 0.00 0.00 0.00 4.52 R
2895 7140 0.591659 GTTCAACTGGTTTCGGAGGC 59.408 55.0 0.00 0.00 0.00 4.70 R
3315 7851 0.603707 CAGCCACATTCGTGACTGGT 60.604 55.0 1.44 0.00 46.54 4.00 R
4305 8882 0.108615 TGCTCTTCTCTAGCGTTGGC 60.109 55.0 0.00 0.00 43.11 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 4.935808 ACAGAGAAAGCCGAACGAATAAAT 59.064 37.500 0.00 0.00 0.00 1.40
62 64 0.179000 ATCGCAGAGAAAAGCCGGAT 59.821 50.000 5.05 0.00 43.63 4.18
63 65 0.036388 TCGCAGAGAAAAGCCGGATT 60.036 50.000 5.05 0.00 0.00 3.01
72 74 1.359459 AAAGCCGGATTCGAAGCGAC 61.359 55.000 4.89 0.00 39.00 5.19
116 124 3.242543 CGTATGCAGGCAATCTTCTGAAC 60.243 47.826 0.00 0.00 33.11 3.18
117 125 1.159285 TGCAGGCAATCTTCTGAACG 58.841 50.000 0.00 0.00 33.11 3.95
118 126 1.160137 GCAGGCAATCTTCTGAACGT 58.840 50.000 0.00 0.00 33.11 3.99
119 127 1.129437 GCAGGCAATCTTCTGAACGTC 59.871 52.381 0.00 0.00 33.11 4.34
120 128 2.693069 CAGGCAATCTTCTGAACGTCT 58.307 47.619 0.00 0.00 33.11 4.18
121 129 2.414481 CAGGCAATCTTCTGAACGTCTG 59.586 50.000 0.00 0.00 33.11 3.51
122 130 2.037772 AGGCAATCTTCTGAACGTCTGT 59.962 45.455 0.00 0.00 0.00 3.41
123 131 2.158449 GGCAATCTTCTGAACGTCTGTG 59.842 50.000 0.00 0.00 0.00 3.66
124 132 2.802816 GCAATCTTCTGAACGTCTGTGT 59.197 45.455 0.00 0.00 0.00 3.72
125 133 3.120854 GCAATCTTCTGAACGTCTGTGTC 60.121 47.826 0.00 0.00 0.00 3.67
126 134 4.051237 CAATCTTCTGAACGTCTGTGTCA 58.949 43.478 0.00 0.00 0.00 3.58
128 136 2.949644 TCTTCTGAACGTCTGTGTCAGA 59.050 45.455 11.85 11.85 38.25 3.27
129 137 3.570125 TCTTCTGAACGTCTGTGTCAGAT 59.430 43.478 15.61 0.00 42.73 2.90
130 138 4.038042 TCTTCTGAACGTCTGTGTCAGATT 59.962 41.667 15.61 0.00 42.73 2.40
131 139 3.902150 TCTGAACGTCTGTGTCAGATTC 58.098 45.455 11.85 4.87 42.73 2.52
146 163 2.114616 AGATTCCCTTGAGCTGTCGAT 58.885 47.619 0.00 0.00 0.00 3.59
218 3305 3.710722 CCCGAAGCTGCTGTCCCT 61.711 66.667 1.35 0.00 0.00 4.20
219 3306 2.348998 CCGAAGCTGCTGTCCCTT 59.651 61.111 1.35 0.00 0.00 3.95
220 3307 2.037136 CCGAAGCTGCTGTCCCTTG 61.037 63.158 1.35 0.00 0.00 3.61
221 3308 1.302033 CGAAGCTGCTGTCCCTTGT 60.302 57.895 1.35 0.00 0.00 3.16
222 3309 1.572085 CGAAGCTGCTGTCCCTTGTG 61.572 60.000 1.35 0.00 0.00 3.33
223 3310 1.228367 AAGCTGCTGTCCCTTGTGG 60.228 57.895 1.35 0.00 0.00 4.17
224 3311 3.368571 GCTGCTGTCCCTTGTGGC 61.369 66.667 0.00 0.00 0.00 5.01
254 3356 1.229428 CAATCACGGTGTGTCTGCTT 58.771 50.000 8.17 0.00 34.79 3.91
269 3371 6.183360 TGTGTCTGCTTGTGAAGATGAATTTT 60.183 34.615 0.00 0.00 29.11 1.82
324 3427 3.056313 GCCACCGGCTCTGAATTGC 62.056 63.158 0.00 0.00 46.69 3.56
356 3474 3.305131 GGGAATTTTTCTCCAACGGACAC 60.305 47.826 0.00 0.00 34.34 3.67
365 3483 3.070446 TCTCCAACGGACACAACATAACT 59.930 43.478 0.00 0.00 0.00 2.24
366 3484 3.135225 TCCAACGGACACAACATAACTG 58.865 45.455 0.00 0.00 0.00 3.16
367 3485 2.350388 CCAACGGACACAACATAACTGC 60.350 50.000 0.00 0.00 0.00 4.40
368 3486 2.543777 ACGGACACAACATAACTGCT 57.456 45.000 0.00 0.00 0.00 4.24
390 3508 2.483876 CCTCTGTTTTCGCAGTCTTCA 58.516 47.619 0.00 0.00 37.70 3.02
425 3553 3.370103 CCCAAATGCCTGCAATCATCTTT 60.370 43.478 0.00 0.00 0.00 2.52
444 3572 7.340743 TCATCTTTGTTTTTGTCCCTTCTAACA 59.659 33.333 0.00 0.00 0.00 2.41
447 3575 7.394923 TCTTTGTTTTTGTCCCTTCTAACAGAA 59.605 33.333 0.00 0.00 32.50 3.02
458 3586 6.500751 TCCCTTCTAACAGAACCTCTAAACAT 59.499 38.462 0.00 0.00 29.89 2.71
485 3613 9.162764 TCTATTACAACTTTAGACTTTGCATCC 57.837 33.333 0.00 0.00 0.00 3.51
505 3633 5.845391 TCCGATTCTTCCAAAAACAAAGT 57.155 34.783 0.00 0.00 0.00 2.66
506 3634 6.945938 TCCGATTCTTCCAAAAACAAAGTA 57.054 33.333 0.00 0.00 0.00 2.24
530 3658 0.784495 TCTCCCACCACTACTCTGGT 59.216 55.000 0.00 0.00 46.18 4.00
531 3659 1.997791 TCTCCCACCACTACTCTGGTA 59.002 52.381 0.00 0.00 43.15 3.25
532 3660 2.100989 CTCCCACCACTACTCTGGTAC 58.899 57.143 0.00 0.00 43.15 3.34
560 3688 8.964772 AGTATGGGTCGAGGTTATTATATGTAC 58.035 37.037 0.00 0.00 0.00 2.90
561 3689 8.964772 GTATGGGTCGAGGTTATTATATGTACT 58.035 37.037 0.00 0.00 0.00 2.73
616 3744 3.552132 TCACAAGGCGGCTATTATTGA 57.448 42.857 13.71 7.83 0.00 2.57
617 3745 3.202906 TCACAAGGCGGCTATTATTGAC 58.797 45.455 13.71 0.00 0.00 3.18
649 3914 5.245850 CGAACCTTTATAACTCTTTTCGCG 58.754 41.667 0.00 0.00 0.00 5.87
652 3917 6.161911 ACCTTTATAACTCTTTTCGCGAAC 57.838 37.500 23.33 0.00 0.00 3.95
653 3918 5.121298 ACCTTTATAACTCTTTTCGCGAACC 59.879 40.000 23.33 0.00 0.00 3.62
685 3950 6.763135 TCTTGAACATGCTTCTACATATGTCC 59.237 38.462 12.68 0.00 32.97 4.02
753 4195 9.445878 TGCTAAATAGTACTAGCACGATACTAT 57.554 33.333 12.94 4.81 44.26 2.12
758 4200 9.669887 AATAGTACTAGCACGATACTATTAGCT 57.330 33.333 15.77 0.00 44.54 3.32
759 4201 7.599630 AGTACTAGCACGATACTATTAGCTC 57.400 40.000 0.00 0.00 33.83 4.09
760 4202 7.388437 AGTACTAGCACGATACTATTAGCTCT 58.612 38.462 0.00 0.00 33.83 4.09
761 4203 6.489127 ACTAGCACGATACTATTAGCTCTG 57.511 41.667 0.00 0.00 33.83 3.35
849 4687 6.464222 ACCTAGATCTGAAATTTTGTGACGA 58.536 36.000 5.18 0.00 0.00 4.20
875 4713 2.664568 TGTACGCGTTCTTTCTATGTGC 59.335 45.455 20.78 0.00 0.00 4.57
880 4759 2.223340 GCGTTCTTTCTATGTGCCATGG 60.223 50.000 7.63 7.63 0.00 3.66
898 4777 5.623141 GCCATGGTTTTCTTTCCAGATTCTC 60.623 44.000 14.67 0.00 37.14 2.87
899 4778 5.713861 CCATGGTTTTCTTTCCAGATTCTCT 59.286 40.000 2.57 0.00 37.14 3.10
916 4795 6.648725 AGATTCTCTACAACTTTCAGCTTCAC 59.351 38.462 0.00 0.00 0.00 3.18
918 4797 4.037565 TCTCTACAACTTTCAGCTTCACGA 59.962 41.667 0.00 0.00 0.00 4.35
960 4839 9.944663 TGGCGTATGATGTCTTAATTTTATTTC 57.055 29.630 0.00 0.00 0.00 2.17
962 4841 9.103048 GCGTATGATGTCTTAATTTTATTTCCG 57.897 33.333 0.00 0.00 0.00 4.30
980 4859 3.454375 TCCGTAGCTTTATTGCACTAGC 58.546 45.455 0.00 0.00 42.57 3.42
982 4861 4.340097 TCCGTAGCTTTATTGCACTAGCTA 59.660 41.667 11.93 11.93 43.31 3.32
984 4863 5.282510 CGTAGCTTTATTGCACTAGCTAGT 58.717 41.667 20.95 20.95 44.35 2.57
1033 4912 3.306364 CCTCGAGAATCAAACAGGTGTCT 60.306 47.826 15.71 0.00 33.17 3.41
1047 4927 0.597637 GTGTCTATGACGATGCCCCG 60.598 60.000 0.00 0.00 34.95 5.73
1097 5158 4.423732 CAAACTGGAATCTTATTTGCCCG 58.576 43.478 0.00 0.00 0.00 6.13
1127 5188 3.368116 CGCCCCTAAGCCTATACATACAC 60.368 52.174 0.00 0.00 0.00 2.90
1220 5281 2.157738 GTCCAGCTTGCTTCAGTTCAT 58.842 47.619 0.00 0.00 0.00 2.57
1314 5375 1.079405 CATGGAGGTGTACGCGGTT 60.079 57.895 12.47 0.00 0.00 4.44
1849 5919 0.322456 TGCAAAATCAGCCGGCTACT 60.322 50.000 32.30 17.04 0.00 2.57
1874 5944 1.667830 TGCCGTTTTCGCCTGAGAG 60.668 57.895 0.00 0.00 42.58 3.20
1914 5984 4.697756 CCTGCGCCTCCGAAACCA 62.698 66.667 4.18 0.00 36.29 3.67
1915 5985 3.423154 CTGCGCCTCCGAAACCAC 61.423 66.667 4.18 0.00 36.29 4.16
1919 5989 4.324991 GCCTCCGAAACCACCGGT 62.325 66.667 0.00 0.00 46.53 5.28
1920 5990 2.358247 CCTCCGAAACCACCGGTG 60.358 66.667 28.26 28.26 46.53 4.94
1921 5991 3.047877 CTCCGAAACCACCGGTGC 61.048 66.667 29.75 14.36 46.53 5.01
1922 5992 4.629523 TCCGAAACCACCGGTGCC 62.630 66.667 29.75 15.51 46.53 5.01
1923 5993 4.939368 CCGAAACCACCGGTGCCA 62.939 66.667 29.75 0.00 41.91 4.92
1924 5994 2.671619 CGAAACCACCGGTGCCAT 60.672 61.111 29.75 16.17 35.34 4.40
1925 5995 2.686816 CGAAACCACCGGTGCCATC 61.687 63.158 29.75 22.17 35.34 3.51
1926 5996 2.671619 AAACCACCGGTGCCATCG 60.672 61.111 29.75 17.26 35.34 3.84
1938 6008 3.746889 CCATCGCCGGCAAAGCAA 61.747 61.111 28.98 4.03 0.00 3.91
1939 6009 2.202518 CATCGCCGGCAAAGCAAG 60.203 61.111 28.98 8.23 0.00 4.01
1940 6010 2.359850 ATCGCCGGCAAAGCAAGA 60.360 55.556 28.98 14.16 0.00 3.02
1941 6011 1.971167 ATCGCCGGCAAAGCAAGAA 60.971 52.632 28.98 0.00 0.00 2.52
1942 6012 1.926511 ATCGCCGGCAAAGCAAGAAG 61.927 55.000 28.98 5.69 0.00 2.85
1943 6013 2.259511 GCCGGCAAAGCAAGAAGG 59.740 61.111 24.80 0.00 0.00 3.46
1944 6014 2.964978 CCGGCAAAGCAAGAAGGG 59.035 61.111 0.00 0.00 0.00 3.95
1945 6015 2.259511 CGGCAAAGCAAGAAGGGC 59.740 61.111 0.00 0.00 0.00 5.19
1946 6016 2.563798 CGGCAAAGCAAGAAGGGCA 61.564 57.895 0.00 0.00 0.00 5.36
1947 6017 1.880819 CGGCAAAGCAAGAAGGGCAT 61.881 55.000 0.00 0.00 0.00 4.40
1948 6018 0.390735 GGCAAAGCAAGAAGGGCATG 60.391 55.000 0.00 0.00 0.00 4.06
1949 6019 1.017701 GCAAAGCAAGAAGGGCATGC 61.018 55.000 9.90 9.90 41.35 4.06
1950 6020 0.390735 CAAAGCAAGAAGGGCATGCC 60.391 55.000 29.47 29.47 41.96 4.40
1951 6021 1.880819 AAAGCAAGAAGGGCATGCCG 61.881 55.000 29.90 16.17 41.96 5.69
1952 6022 4.503314 GCAAGAAGGGCATGCCGC 62.503 66.667 29.90 21.95 35.26 6.53
1976 6046 2.033194 CGCCGTCTCCCAAACCTTC 61.033 63.158 0.00 0.00 0.00 3.46
2088 6158 1.799258 CGCCTGCAAAGCAAGAAGGT 61.799 55.000 8.92 0.00 38.41 3.50
2160 6230 1.291272 GCCTGCAAAGCAAGAAGGG 59.709 57.895 3.57 0.00 38.41 3.95
2165 6235 0.604578 GCAAAGCAAGAAGGGCATGA 59.395 50.000 0.00 0.00 0.00 3.07
2169 6239 2.787249 CAAGAAGGGCATGACGCG 59.213 61.111 3.53 3.53 43.84 6.01
2194 6267 0.320508 GCCGTCTCCGAAACCTTCTT 60.321 55.000 0.00 0.00 35.63 2.52
2228 6301 2.256461 GTCGCCTGCAAAGCAAGG 59.744 61.111 8.92 0.00 38.41 3.61
2295 6407 3.797353 TCCATGCCGCCTTCTCCC 61.797 66.667 0.00 0.00 0.00 4.30
2307 6419 0.685097 CTTCTCCCAAACCAGTCGGA 59.315 55.000 0.00 0.00 35.59 4.55
2359 6471 2.290287 CCATCCGGTCAGGTGGTGA 61.290 63.158 0.00 0.00 41.99 4.02
2367 6479 2.747460 CAGGTGGTGACCATGCCG 60.747 66.667 7.94 0.00 45.98 5.69
2384 6496 2.694760 CGCCTTCTCCAAAGCCAGC 61.695 63.158 0.00 0.00 0.00 4.85
2451 6563 4.760047 GTGTCCATGCCGCCGTCT 62.760 66.667 0.00 0.00 0.00 4.18
2452 6564 4.451150 TGTCCATGCCGCCGTCTC 62.451 66.667 0.00 0.00 0.00 3.36
2453 6565 4.451150 GTCCATGCCGCCGTCTCA 62.451 66.667 0.00 0.00 0.00 3.27
2454 6566 4.147449 TCCATGCCGCCGTCTCAG 62.147 66.667 0.00 0.00 0.00 3.35
2455 6567 4.147449 CCATGCCGCCGTCTCAGA 62.147 66.667 0.00 0.00 0.00 3.27
2456 6568 2.125552 CATGCCGCCGTCTCAGAA 60.126 61.111 0.00 0.00 0.00 3.02
2457 6569 1.741401 CATGCCGCCGTCTCAGAAA 60.741 57.895 0.00 0.00 0.00 2.52
2458 6570 1.741770 ATGCCGCCGTCTCAGAAAC 60.742 57.895 0.00 0.00 0.00 2.78
2459 6571 2.048127 GCCGCCGTCTCAGAAACT 60.048 61.111 0.00 0.00 0.00 2.66
2460 6572 2.383527 GCCGCCGTCTCAGAAACTG 61.384 63.158 0.00 0.00 0.00 3.16
2461 6573 1.738099 CCGCCGTCTCAGAAACTGG 60.738 63.158 0.00 0.00 31.51 4.00
2462 6574 2.383527 CGCCGTCTCAGAAACTGGC 61.384 63.158 0.00 0.99 39.10 4.85
2463 6575 2.035442 GCCGTCTCAGAAACTGGCC 61.035 63.158 0.00 0.00 36.51 5.36
2464 6576 1.738099 CCGTCTCAGAAACTGGCCG 60.738 63.158 0.00 0.00 31.51 6.13
2465 6577 1.738099 CGTCTCAGAAACTGGCCGG 60.738 63.158 11.02 11.02 31.51 6.13
2466 6578 1.376037 GTCTCAGAAACTGGCCGGG 60.376 63.158 18.00 5.11 31.51 5.73
2467 6579 2.747855 CTCAGAAACTGGCCGGGC 60.748 66.667 23.42 23.42 31.51 6.13
2537 6688 2.048127 GCCGCCGTCTCAGAAACT 60.048 61.111 0.00 0.00 0.00 2.66
2868 7019 2.809601 CCGTCTCAGAAACCGGCG 60.810 66.667 0.00 0.00 33.20 6.46
2883 7128 4.722700 GCGGGGCATGTGGTGTCT 62.723 66.667 0.00 0.00 31.47 3.41
2910 7155 2.032071 CCGCCTCCGAAACCAGTT 59.968 61.111 0.00 0.00 36.29 3.16
2931 7458 2.281414 CGTGTGGTGTCCATGCCA 60.281 61.111 0.00 0.00 35.28 4.92
3078 7605 2.555547 AAAGCCAACCGAGCAGCAC 61.556 57.895 0.00 0.00 0.00 4.40
3189 7722 2.986979 CCAGCTGCACATGTGGCA 60.987 61.111 26.55 21.62 39.32 4.92
3286 7822 2.125673 CGCCGTCTCCGAAACCAT 60.126 61.111 0.00 0.00 35.63 3.55
3288 7824 1.814169 GCCGTCTCCGAAACCATCC 60.814 63.158 0.00 0.00 35.63 3.51
3297 7833 1.086696 CGAAACCATCCGTTCATGCT 58.913 50.000 0.00 0.00 31.78 3.79
3315 7851 1.228398 TGTGCCGCCATCTCCAAAA 60.228 52.632 0.00 0.00 0.00 2.44
3316 7852 1.212751 GTGCCGCCATCTCCAAAAC 59.787 57.895 0.00 0.00 0.00 2.43
3319 7855 1.937546 GCCGCCATCTCCAAAACCAG 61.938 60.000 0.00 0.00 0.00 4.00
3320 7856 0.609131 CCGCCATCTCCAAAACCAGT 60.609 55.000 0.00 0.00 0.00 4.00
3325 7861 2.549992 CCATCTCCAAAACCAGTCACGA 60.550 50.000 0.00 0.00 0.00 4.35
3331 7867 2.287547 CCAAAACCAGTCACGAATGTGG 60.288 50.000 0.00 0.00 46.42 4.17
3355 7894 2.436646 CGCCGTCTCCAAAGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
3447 7986 2.189521 CCATACGGCCAGGTGGTC 59.810 66.667 2.24 0.00 37.57 4.02
3479 8018 4.986708 TCCAAAACCAGCCGCCCC 62.987 66.667 0.00 0.00 0.00 5.80
3480 8019 4.994756 CCAAAACCAGCCGCCCCT 62.995 66.667 0.00 0.00 0.00 4.79
3490 8029 4.579384 CCGCCCCTGTGGTTGTGT 62.579 66.667 0.00 0.00 37.37 3.72
3630 8169 1.318158 AAGGAGAACCGACGGCGTAT 61.318 55.000 14.74 0.00 41.83 3.06
3641 8180 2.032634 CGGCGTATGCACCACAAGT 61.033 57.895 9.59 0.00 45.35 3.16
3645 8184 1.288419 CGTATGCACCACAAGTCGCA 61.288 55.000 0.00 0.00 37.07 5.10
3711 8250 3.304559 GCAGAGATGTTTACACGCACTAG 59.695 47.826 0.00 0.00 0.00 2.57
3714 8253 5.739630 CAGAGATGTTTACACGCACTAGTAG 59.260 44.000 0.00 0.00 0.00 2.57
3716 8255 3.928727 TGTTTACACGCACTAGTAGCT 57.071 42.857 13.14 0.00 0.00 3.32
3725 8271 3.318557 ACGCACTAGTAGCTAAAGATCCC 59.681 47.826 10.55 0.00 0.00 3.85
3736 8282 8.885346 AGTAGCTAAAGATCCCAATTTATAGCT 58.115 33.333 8.75 8.75 35.54 3.32
3737 8283 9.508642 GTAGCTAAAGATCCCAATTTATAGCTT 57.491 33.333 8.99 0.00 34.10 3.74
3738 8284 8.401490 AGCTAAAGATCCCAATTTATAGCTTG 57.599 34.615 0.00 0.00 30.03 4.01
3739 8285 8.220559 AGCTAAAGATCCCAATTTATAGCTTGA 58.779 33.333 0.00 0.00 30.03 3.02
3740 8286 9.018582 GCTAAAGATCCCAATTTATAGCTTGAT 57.981 33.333 0.00 0.00 0.00 2.57
3821 8392 7.870954 TGCTATAAATTAAGACATGGGTACGAG 59.129 37.037 0.00 0.00 0.00 4.18
3900 8474 7.173735 TGCATATATGGAAGAGTAAACAGCATG 59.826 37.037 14.51 0.00 46.00 4.06
3938 8513 6.305638 GTGGAAAATCGATTTGCTCAAACTAC 59.694 38.462 24.72 9.06 39.83 2.73
3984 8559 3.135225 TGAACATACTGAAACGTGTGGG 58.865 45.455 0.00 0.00 31.24 4.61
3998 8573 3.886505 ACGTGTGGGTAAATGATGTTTGT 59.113 39.130 0.00 0.00 0.00 2.83
3999 8574 4.225984 CGTGTGGGTAAATGATGTTTGTG 58.774 43.478 0.00 0.00 0.00 3.33
4000 8575 4.261405 CGTGTGGGTAAATGATGTTTGTGT 60.261 41.667 0.00 0.00 0.00 3.72
4001 8576 5.219633 GTGTGGGTAAATGATGTTTGTGTC 58.780 41.667 0.00 0.00 0.00 3.67
4002 8577 5.009610 GTGTGGGTAAATGATGTTTGTGTCT 59.990 40.000 0.00 0.00 0.00 3.41
4003 8578 5.596361 TGTGGGTAAATGATGTTTGTGTCTT 59.404 36.000 0.00 0.00 0.00 3.01
4004 8579 6.097554 TGTGGGTAAATGATGTTTGTGTCTTT 59.902 34.615 0.00 0.00 0.00 2.52
4005 8580 6.420604 GTGGGTAAATGATGTTTGTGTCTTTG 59.579 38.462 0.00 0.00 0.00 2.77
4024 8599 6.595716 GTCTTTGTGAGCATACTGAAACCTAT 59.404 38.462 0.00 0.00 0.00 2.57
4038 8613 8.561738 ACTGAAACCTATATGTGGTAGTTTTG 57.438 34.615 3.16 0.00 36.69 2.44
4124 8701 8.736244 GGCAACTTTGACTAGATTTGGTATTAA 58.264 33.333 0.00 0.00 31.99 1.40
4143 8720 5.440234 TTAATCGATTCGGGAGAGAAGAG 57.560 43.478 15.25 0.00 41.75 2.85
4158 8735 1.476007 AAGAGGAGGCGCAACTCTGT 61.476 55.000 22.71 13.13 40.49 3.41
4195 8772 0.878523 CAACCGACAACAAGGCTCGA 60.879 55.000 0.00 0.00 0.00 4.04
4217 8794 4.373116 GCCGTCGAGGTCAAGCCA 62.373 66.667 4.18 0.00 43.70 4.75
4222 8799 0.603569 GTCGAGGTCAAGCCAGAAGA 59.396 55.000 0.00 0.00 40.61 2.87
4268 8845 3.195698 GGCGTGACCGATGGAAGC 61.196 66.667 0.00 0.00 35.63 3.86
4274 8851 0.684535 TGACCGATGGAAGCAGTCAA 59.315 50.000 0.00 0.00 34.68 3.18
4279 8856 2.354704 CCGATGGAAGCAGTCAAAGGTA 60.355 50.000 0.00 0.00 0.00 3.08
4292 8869 4.527038 AGTCAAAGGTAGACGAATCAAGGA 59.473 41.667 0.00 0.00 40.84 3.36
4305 8882 1.127567 TCAAGGAGTGGGGTGGTCTG 61.128 60.000 0.00 0.00 0.00 3.51
4307 8884 4.035102 GGAGTGGGGTGGTCTGCC 62.035 72.222 0.00 0.00 0.00 4.85
4325 8902 1.919918 CCAACGCTAGAGAAGAGCAG 58.080 55.000 0.00 0.00 40.09 4.24
4328 8905 1.067250 CGCTAGAGAAGAGCAGGGC 59.933 63.158 0.00 0.00 40.09 5.19
4332 8909 1.606668 CTAGAGAAGAGCAGGGCGTAG 59.393 57.143 0.00 0.00 0.00 3.51
4345 8922 2.134287 GCGTAGAGGGATGCCTGGA 61.134 63.158 12.02 0.00 0.00 3.86
4429 9006 2.580815 CAGGCTGCAGACCGATGA 59.419 61.111 18.28 0.00 0.00 2.92
4438 9015 2.695147 TGCAGACCGATGATACATGAGT 59.305 45.455 0.00 0.00 0.00 3.41
4441 9018 4.737649 GCAGACCGATGATACATGAGTTGA 60.738 45.833 0.00 0.00 0.00 3.18
4442 9019 4.981054 CAGACCGATGATACATGAGTTGAG 59.019 45.833 0.00 0.00 0.00 3.02
4443 9020 4.038522 AGACCGATGATACATGAGTTGAGG 59.961 45.833 0.00 0.00 0.00 3.86
4444 9021 3.070159 ACCGATGATACATGAGTTGAGGG 59.930 47.826 0.00 0.00 0.00 4.30
4445 9022 3.070159 CCGATGATACATGAGTTGAGGGT 59.930 47.826 0.00 0.00 0.00 4.34
4446 9023 4.053983 CGATGATACATGAGTTGAGGGTG 58.946 47.826 0.00 0.00 0.00 4.61
4447 9024 3.266510 TGATACATGAGTTGAGGGTGC 57.733 47.619 0.00 0.00 0.00 5.01
4448 9025 2.840038 TGATACATGAGTTGAGGGTGCT 59.160 45.455 0.00 0.00 0.00 4.40
4449 9026 2.768253 TACATGAGTTGAGGGTGCTG 57.232 50.000 0.00 0.00 0.00 4.41
4450 9027 0.037303 ACATGAGTTGAGGGTGCTGG 59.963 55.000 0.00 0.00 0.00 4.85
4451 9028 0.325933 CATGAGTTGAGGGTGCTGGA 59.674 55.000 0.00 0.00 0.00 3.86
4452 9029 1.064906 CATGAGTTGAGGGTGCTGGAT 60.065 52.381 0.00 0.00 0.00 3.41
4453 9030 1.067295 TGAGTTGAGGGTGCTGGATT 58.933 50.000 0.00 0.00 0.00 3.01
4454 9031 1.425066 TGAGTTGAGGGTGCTGGATTT 59.575 47.619 0.00 0.00 0.00 2.17
4455 9032 2.087646 GAGTTGAGGGTGCTGGATTTC 58.912 52.381 0.00 0.00 0.00 2.17
4456 9033 1.425066 AGTTGAGGGTGCTGGATTTCA 59.575 47.619 0.00 0.00 0.00 2.69
4457 9034 2.158475 AGTTGAGGGTGCTGGATTTCAA 60.158 45.455 0.00 0.00 0.00 2.69
4458 9035 2.827921 GTTGAGGGTGCTGGATTTCAAT 59.172 45.455 0.00 0.00 0.00 2.57
4459 9036 4.016444 GTTGAGGGTGCTGGATTTCAATA 58.984 43.478 0.00 0.00 0.00 1.90
4460 9037 4.524802 TGAGGGTGCTGGATTTCAATAT 57.475 40.909 0.00 0.00 0.00 1.28
4461 9038 5.645056 TGAGGGTGCTGGATTTCAATATA 57.355 39.130 0.00 0.00 0.00 0.86
4462 9039 5.624159 TGAGGGTGCTGGATTTCAATATAG 58.376 41.667 0.00 0.00 0.00 1.31
4463 9040 5.369404 TGAGGGTGCTGGATTTCAATATAGA 59.631 40.000 0.00 0.00 0.00 1.98
4464 9041 5.874093 AGGGTGCTGGATTTCAATATAGAG 58.126 41.667 0.00 0.00 0.00 2.43
4465 9042 5.006386 GGGTGCTGGATTTCAATATAGAGG 58.994 45.833 0.00 0.00 0.00 3.69
4466 9043 5.221925 GGGTGCTGGATTTCAATATAGAGGA 60.222 44.000 0.00 0.00 0.00 3.71
4467 9044 5.936956 GGTGCTGGATTTCAATATAGAGGAG 59.063 44.000 0.00 0.00 0.00 3.69
4468 9045 5.936956 GTGCTGGATTTCAATATAGAGGAGG 59.063 44.000 0.00 0.00 0.00 4.30
4469 9046 5.846164 TGCTGGATTTCAATATAGAGGAGGA 59.154 40.000 0.00 0.00 0.00 3.71
4470 9047 6.013898 TGCTGGATTTCAATATAGAGGAGGAG 60.014 42.308 0.00 0.00 0.00 3.69
4471 9048 6.212388 GCTGGATTTCAATATAGAGGAGGAGA 59.788 42.308 0.00 0.00 0.00 3.71
4472 9049 7.256475 GCTGGATTTCAATATAGAGGAGGAGAA 60.256 40.741 0.00 0.00 0.00 2.87
4473 9050 8.200024 TGGATTTCAATATAGAGGAGGAGAAG 57.800 38.462 0.00 0.00 0.00 2.85
4474 9051 8.013072 TGGATTTCAATATAGAGGAGGAGAAGA 58.987 37.037 0.00 0.00 0.00 2.87
4475 9052 8.875168 GGATTTCAATATAGAGGAGGAGAAGAA 58.125 37.037 0.00 0.00 0.00 2.52
4476 9053 9.927668 GATTTCAATATAGAGGAGGAGAAGAAG 57.072 37.037 0.00 0.00 0.00 2.85
4477 9054 7.847711 TTCAATATAGAGGAGGAGAAGAAGG 57.152 40.000 0.00 0.00 0.00 3.46
4478 9055 7.168022 TCAATATAGAGGAGGAGAAGAAGGA 57.832 40.000 0.00 0.00 0.00 3.36
4479 9056 7.237982 TCAATATAGAGGAGGAGAAGAAGGAG 58.762 42.308 0.00 0.00 0.00 3.69
4480 9057 7.074366 TCAATATAGAGGAGGAGAAGAAGGAGA 59.926 40.741 0.00 0.00 0.00 3.71
4481 9058 5.742562 ATAGAGGAGGAGAAGAAGGAGAA 57.257 43.478 0.00 0.00 0.00 2.87
4482 9059 3.981212 AGAGGAGGAGAAGAAGGAGAAG 58.019 50.000 0.00 0.00 0.00 2.85
4483 9060 3.596046 AGAGGAGGAGAAGAAGGAGAAGA 59.404 47.826 0.00 0.00 0.00 2.87
4484 9061 4.232820 AGAGGAGGAGAAGAAGGAGAAGAT 59.767 45.833 0.00 0.00 0.00 2.40
4485 9062 4.289245 AGGAGGAGAAGAAGGAGAAGATG 58.711 47.826 0.00 0.00 0.00 2.90
4486 9063 3.387699 GGAGGAGAAGAAGGAGAAGATGG 59.612 52.174 0.00 0.00 0.00 3.51
4487 9064 2.771372 AGGAGAAGAAGGAGAAGATGGC 59.229 50.000 0.00 0.00 0.00 4.40
4501 9293 6.266131 AGAAGATGGCCTATTGTTGGATTA 57.734 37.500 3.32 0.00 0.00 1.75
4532 9325 1.385347 TGACGGGGGCCTCCATATT 60.385 57.895 25.09 1.11 37.22 1.28
4553 9346 5.514500 TTGTAGGCCCCATAGATTAATCC 57.486 43.478 11.92 0.00 0.00 3.01
4557 9350 4.990810 AGGCCCCATAGATTAATCCCTAT 58.009 43.478 11.92 1.97 0.00 2.57
4558 9351 4.978388 AGGCCCCATAGATTAATCCCTATC 59.022 45.833 11.92 0.00 0.00 2.08
4561 9354 6.562608 GGCCCCATAGATTAATCCCTATCATA 59.437 42.308 11.92 0.00 0.00 2.15
4564 9357 9.230477 CCCCATAGATTAATCCCTATCATACTT 57.770 37.037 11.92 0.00 0.00 2.24
4615 9408 0.743345 GTGTACACGAAGGGATGGCC 60.743 60.000 10.84 0.00 0.00 5.36
4616 9409 1.195442 TGTACACGAAGGGATGGCCA 61.195 55.000 8.56 8.56 35.15 5.36
4617 9410 0.180406 GTACACGAAGGGATGGCCAT 59.820 55.000 20.96 20.96 35.15 4.40
4618 9411 1.414919 GTACACGAAGGGATGGCCATA 59.585 52.381 20.84 0.00 35.15 2.74
4619 9412 1.140312 ACACGAAGGGATGGCCATAT 58.860 50.000 20.84 4.81 35.15 1.78
4622 9415 2.958355 CACGAAGGGATGGCCATATTTT 59.042 45.455 20.84 12.88 35.15 1.82
4623 9416 3.384467 CACGAAGGGATGGCCATATTTTT 59.616 43.478 20.84 10.97 35.15 1.94
4643 9436 3.611766 TTTTTGCGGGAAAAACTTCCA 57.388 38.095 14.93 0.00 42.89 3.53
4644 9437 3.611766 TTTTGCGGGAAAAACTTCCAA 57.388 38.095 4.86 0.00 42.89 3.53
4645 9438 3.828875 TTTGCGGGAAAAACTTCCAAT 57.171 38.095 6.26 0.00 42.89 3.16
4646 9439 3.378911 TTGCGGGAAAAACTTCCAATC 57.621 42.857 6.26 0.00 42.89 2.67
4647 9440 2.593026 TGCGGGAAAAACTTCCAATCT 58.407 42.857 6.26 0.00 42.89 2.40
4648 9441 3.757270 TGCGGGAAAAACTTCCAATCTA 58.243 40.909 6.26 0.00 42.89 1.98
4649 9442 4.340617 TGCGGGAAAAACTTCCAATCTAT 58.659 39.130 6.26 0.00 42.89 1.98
4650 9443 4.770010 TGCGGGAAAAACTTCCAATCTATT 59.230 37.500 6.26 0.00 42.89 1.73
4651 9444 5.105917 TGCGGGAAAAACTTCCAATCTATTC 60.106 40.000 6.26 0.00 42.89 1.75
4652 9445 5.105917 GCGGGAAAAACTTCCAATCTATTCA 60.106 40.000 6.26 0.00 42.89 2.57
4653 9446 6.405842 GCGGGAAAAACTTCCAATCTATTCAT 60.406 38.462 6.26 0.00 42.89 2.57
4654 9447 7.196331 CGGGAAAAACTTCCAATCTATTCATC 58.804 38.462 6.26 0.00 42.89 2.92
4655 9448 7.067494 CGGGAAAAACTTCCAATCTATTCATCT 59.933 37.037 6.26 0.00 42.89 2.90
4656 9449 8.753133 GGGAAAAACTTCCAATCTATTCATCTT 58.247 33.333 6.26 0.00 42.89 2.40
4657 9450 9.794685 GGAAAAACTTCCAATCTATTCATCTTC 57.205 33.333 0.00 0.00 40.79 2.87
4662 9455 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
4663 9456 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
4665 9458 9.856162 TTCCAATCTATTCATCTTCAATCATGA 57.144 29.630 0.00 0.00 0.00 3.07
4675 9468 8.579682 TCATCTTCAATCATGATAGTACAACG 57.420 34.615 9.04 0.00 34.96 4.10
4676 9469 8.413229 TCATCTTCAATCATGATAGTACAACGA 58.587 33.333 9.04 0.00 34.96 3.85
4677 9470 9.034544 CATCTTCAATCATGATAGTACAACGAA 57.965 33.333 9.04 2.03 34.96 3.85
4678 9471 9.770097 ATCTTCAATCATGATAGTACAACGAAT 57.230 29.630 9.04 0.00 34.96 3.34
4715 9508 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
4716 9509 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
4717 9510 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
4718 9511 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
4719 9512 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
4720 9513 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
4721 9514 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
4722 9515 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
4723 9516 2.423088 CCAGATCCGTAGACCACCTAGT 60.423 54.545 0.00 0.00 0.00 2.57
4724 9517 2.619177 CAGATCCGTAGACCACCTAGTG 59.381 54.545 0.00 0.00 0.00 2.74
4725 9518 2.508716 AGATCCGTAGACCACCTAGTGA 59.491 50.000 0.00 0.00 35.23 3.41
4726 9519 2.119801 TCCGTAGACCACCTAGTGAC 57.880 55.000 0.00 0.00 35.23 3.67
4727 9520 0.731417 CCGTAGACCACCTAGTGACG 59.269 60.000 0.00 0.00 35.23 4.35
4728 9521 1.676916 CCGTAGACCACCTAGTGACGA 60.677 57.143 7.89 0.00 33.83 4.20
4729 9522 1.396301 CGTAGACCACCTAGTGACGAC 59.604 57.143 0.00 0.00 33.83 4.34
4730 9523 2.709213 GTAGACCACCTAGTGACGACT 58.291 52.381 0.00 0.00 35.23 4.18
4731 9524 3.677148 CGTAGACCACCTAGTGACGACTA 60.677 52.174 0.00 0.00 33.83 2.59
4732 9525 2.709213 AGACCACCTAGTGACGACTAC 58.291 52.381 0.00 0.00 35.23 2.73
4733 9526 2.039480 AGACCACCTAGTGACGACTACA 59.961 50.000 0.00 0.00 35.23 2.74
4734 9527 2.816087 GACCACCTAGTGACGACTACAA 59.184 50.000 0.00 0.00 35.23 2.41
4735 9528 2.818432 ACCACCTAGTGACGACTACAAG 59.182 50.000 0.00 0.00 35.23 3.16
4736 9529 2.415625 CCACCTAGTGACGACTACAAGC 60.416 54.545 0.00 0.00 35.23 4.01
4737 9530 2.228103 CACCTAGTGACGACTACAAGCA 59.772 50.000 0.00 0.00 35.23 3.91
4738 9531 2.228343 ACCTAGTGACGACTACAAGCAC 59.772 50.000 0.00 0.00 33.21 4.40
4739 9532 2.488545 CCTAGTGACGACTACAAGCACT 59.511 50.000 0.00 0.00 42.04 4.40
4740 9533 2.423926 AGTGACGACTACAAGCACTG 57.576 50.000 0.00 0.00 38.30 3.66
4741 9534 1.954382 AGTGACGACTACAAGCACTGA 59.046 47.619 0.00 0.00 38.30 3.41
4742 9535 2.361119 AGTGACGACTACAAGCACTGAA 59.639 45.455 0.00 0.00 38.30 3.02
4743 9536 2.726760 GTGACGACTACAAGCACTGAAG 59.273 50.000 0.00 0.00 0.00 3.02
4744 9537 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
4745 9538 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
4746 9539 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
4747 9540 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
4748 9541 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
4749 9542 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
4750 9543 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
4751 9544 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
4752 9545 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
4753 9546 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
4776 9569 4.899239 CCGCTGTCATCGCCCCTC 62.899 72.222 0.00 0.00 0.00 4.30
4777 9570 4.899239 CGCTGTCATCGCCCCTCC 62.899 72.222 0.00 0.00 0.00 4.30
4778 9571 4.554036 GCTGTCATCGCCCCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
4779 9572 2.765807 CTGTCATCGCCCCTCCCT 60.766 66.667 0.00 0.00 0.00 4.20
4780 9573 2.764128 TGTCATCGCCCCTCCCTC 60.764 66.667 0.00 0.00 0.00 4.30
4781 9574 3.917760 GTCATCGCCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
4801 9594 4.038080 GGAGCCGGGCAAACGTTG 62.038 66.667 23.09 0.00 0.00 4.10
4802 9595 3.284449 GAGCCGGGCAAACGTTGT 61.284 61.111 23.09 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 0.036388 AATCCGGCTTTTCTCTGCGA 60.036 50.000 0.00 0.00 0.00 5.10
50 52 1.087501 GCTTCGAATCCGGCTTTTCT 58.912 50.000 0.00 0.00 36.24 2.52
62 64 2.501223 ATCCTTGGCGTCGCTTCGAA 62.501 55.000 18.11 0.00 37.72 3.71
63 65 1.659622 TATCCTTGGCGTCGCTTCGA 61.660 55.000 18.11 8.12 0.00 3.71
116 124 2.029020 TCAAGGGAATCTGACACAGACG 60.029 50.000 3.54 0.00 43.63 4.18
117 125 3.594134 CTCAAGGGAATCTGACACAGAC 58.406 50.000 3.54 0.00 43.63 3.51
118 126 2.027745 GCTCAAGGGAATCTGACACAGA 60.028 50.000 3.95 3.95 44.99 3.41
119 127 2.027377 AGCTCAAGGGAATCTGACACAG 60.027 50.000 0.00 0.00 0.00 3.66
120 128 1.980765 AGCTCAAGGGAATCTGACACA 59.019 47.619 0.00 0.00 0.00 3.72
121 129 2.289945 ACAGCTCAAGGGAATCTGACAC 60.290 50.000 0.00 0.00 31.71 3.67
122 130 1.980765 ACAGCTCAAGGGAATCTGACA 59.019 47.619 0.00 0.00 31.71 3.58
123 131 2.626840 GACAGCTCAAGGGAATCTGAC 58.373 52.381 0.00 0.00 31.71 3.51
124 132 1.205655 CGACAGCTCAAGGGAATCTGA 59.794 52.381 0.00 0.00 31.71 3.27
125 133 1.205655 TCGACAGCTCAAGGGAATCTG 59.794 52.381 0.00 0.00 32.82 2.90
126 134 1.561643 TCGACAGCTCAAGGGAATCT 58.438 50.000 0.00 0.00 0.00 2.40
128 136 1.202463 CGATCGACAGCTCAAGGGAAT 60.202 52.381 10.26 0.00 0.00 3.01
129 137 0.173481 CGATCGACAGCTCAAGGGAA 59.827 55.000 10.26 0.00 0.00 3.97
130 138 0.679960 TCGATCGACAGCTCAAGGGA 60.680 55.000 15.15 0.00 0.00 4.20
131 139 0.248825 CTCGATCGACAGCTCAAGGG 60.249 60.000 15.15 0.00 0.00 3.95
222 3309 0.668401 GTGATTGGCAAGCACAAGCC 60.668 55.000 35.79 14.53 46.50 4.35
223 3310 2.818350 GTGATTGGCAAGCACAAGC 58.182 52.632 35.79 14.89 46.50 4.01
254 3356 6.914654 TGGATGGAAAAATTCATCTTCACA 57.085 33.333 5.21 0.00 39.57 3.58
324 3427 2.634453 AGAAAAATTCCCAGCAACCAGG 59.366 45.455 0.00 0.00 0.00 4.45
356 3474 2.430465 ACAGAGGCAGCAGTTATGTTG 58.570 47.619 0.00 0.00 40.36 3.33
365 3483 1.509644 CTGCGAAAACAGAGGCAGCA 61.510 55.000 0.00 0.00 45.28 4.41
366 3484 1.208614 CTGCGAAAACAGAGGCAGC 59.791 57.895 0.00 0.00 45.28 5.25
368 3486 0.106708 AGACTGCGAAAACAGAGGCA 59.893 50.000 0.00 0.00 40.25 4.75
390 3508 2.812658 CATTTGGGGCTTCTCCTTTCT 58.187 47.619 0.00 0.00 34.39 2.52
425 3553 5.358725 GGTTCTGTTAGAAGGGACAAAAACA 59.641 40.000 0.00 0.00 34.42 2.83
505 3633 6.732487 CCAGAGTAGTGGTGGGAGATATATA 58.268 44.000 0.00 0.00 32.32 0.86
506 3634 5.584913 CCAGAGTAGTGGTGGGAGATATAT 58.415 45.833 0.00 0.00 32.32 0.86
531 3659 9.186837 CATATAATAACCTCGACCCATACTAGT 57.813 37.037 0.00 0.00 0.00 2.57
532 3660 9.186837 ACATATAATAACCTCGACCCATACTAG 57.813 37.037 0.00 0.00 0.00 2.57
562 3690 8.705594 ACTTAGTACACTATTATTGCACCTCAT 58.294 33.333 0.00 0.00 0.00 2.90
616 3744 2.243602 TAAAGGTTCGCCGAAAGTGT 57.756 45.000 0.00 0.00 43.66 3.55
617 3745 4.390909 AGTTATAAAGGTTCGCCGAAAGTG 59.609 41.667 0.00 0.00 43.66 3.16
652 3917 7.981789 TGTAGAAGCATGTTCAAGAACTATAGG 59.018 37.037 13.49 0.00 41.67 2.57
653 3918 8.932945 TGTAGAAGCATGTTCAAGAACTATAG 57.067 34.615 13.49 0.00 41.67 1.31
661 3926 6.017605 GGGACATATGTAGAAGCATGTTCAAG 60.018 42.308 8.71 0.00 31.94 3.02
717 4098 9.152595 GCTAGTACTATTTAGCACTCTTTTTGT 57.847 33.333 9.95 0.00 41.45 2.83
718 4099 9.151471 TGCTAGTACTATTTAGCACTCTTTTTG 57.849 33.333 12.94 0.00 45.26 2.44
737 4118 7.160049 ACAGAGCTAATAGTATCGTGCTAGTA 58.840 38.462 0.00 0.00 0.00 1.82
789 4611 6.070824 ACTTGACAAACAAAAGGACAAATCCT 60.071 34.615 0.00 0.00 44.53 3.24
849 4687 2.817901 AGAAAGAACGCGTACAACTGT 58.182 42.857 14.46 5.05 0.00 3.55
875 4713 5.958955 GAGAATCTGGAAAGAAAACCATGG 58.041 41.667 11.19 11.19 35.54 3.66
898 4777 5.597813 AATCGTGAAGCTGAAAGTTGTAG 57.402 39.130 0.00 0.00 35.30 2.74
899 4778 5.295787 ACAAATCGTGAAGCTGAAAGTTGTA 59.704 36.000 0.00 0.00 35.30 2.41
916 4795 9.313323 CATACGCCATTATAGTAAAACAAATCG 57.687 33.333 0.00 0.00 0.00 3.34
960 4839 3.458189 AGCTAGTGCAATAAAGCTACGG 58.542 45.455 9.58 0.00 43.29 4.02
962 4841 6.517914 CACTAGCTAGTGCAATAAAGCTAC 57.482 41.667 34.51 0.00 46.03 3.58
988 4867 5.122869 GGCACATATATATTGGTGAGCACTG 59.877 44.000 14.39 0.00 33.16 3.66
990 4869 5.248640 AGGCACATATATATTGGTGAGCAC 58.751 41.667 14.39 0.00 33.16 4.40
1033 4912 0.603065 CAGATCGGGGCATCGTCATA 59.397 55.000 0.00 0.00 0.00 2.15
1047 4927 5.863935 GCAAAACAGGGTGTAAATTCAGATC 59.136 40.000 0.00 0.00 0.00 2.75
1097 5158 3.512516 CTTAGGGGCGCTGCTTGC 61.513 66.667 15.11 0.00 38.57 4.01
1113 5174 2.095364 GCGCTACGTGTATGTATAGGCT 60.095 50.000 0.00 0.00 0.00 4.58
1575 5636 1.153823 CTGGTAGGACGCGAACTGG 60.154 63.158 15.93 0.00 0.00 4.00
1627 5688 2.353889 GACGATACGTGAGGTAGAGCAA 59.646 50.000 0.00 0.00 41.37 3.91
1836 5906 0.107456 CATCCAAGTAGCCGGCTGAT 59.893 55.000 38.98 27.47 0.00 2.90
1837 5907 1.264749 ACATCCAAGTAGCCGGCTGA 61.265 55.000 38.98 26.46 0.00 4.26
1849 5919 1.284408 GCGAAAACGGCACATCCAA 59.716 52.632 0.00 0.00 34.01 3.53
1874 5944 4.910585 CCGTATGCCCGGGTGCTC 62.911 72.222 24.63 5.46 44.32 4.26
1897 5967 4.697756 TGGTTTCGGAGGCGCAGG 62.698 66.667 10.83 0.00 0.00 4.85
1898 5968 3.423154 GTGGTTTCGGAGGCGCAG 61.423 66.667 10.83 0.00 0.00 5.18
1907 5977 2.671619 ATGGCACCGGTGGTTTCG 60.672 61.111 34.58 10.02 31.02 3.46
1908 5978 2.686816 CGATGGCACCGGTGGTTTC 61.687 63.158 34.58 18.32 31.02 2.78
1909 5979 2.671619 CGATGGCACCGGTGGTTT 60.672 61.111 34.58 0.00 31.02 3.27
1921 5991 3.688475 CTTGCTTTGCCGGCGATGG 62.688 63.158 26.27 18.92 0.00 3.51
1922 5992 2.198906 TTCTTGCTTTGCCGGCGATG 62.199 55.000 23.90 23.01 0.00 3.84
1923 5993 1.926511 CTTCTTGCTTTGCCGGCGAT 61.927 55.000 23.90 0.00 0.00 4.58
1924 5994 2.593148 TTCTTGCTTTGCCGGCGA 60.593 55.556 23.90 19.26 0.00 5.54
1925 5995 2.126734 CTTCTTGCTTTGCCGGCG 60.127 61.111 23.90 8.96 0.00 6.46
1926 5996 2.259511 CCTTCTTGCTTTGCCGGC 59.740 61.111 22.73 22.73 0.00 6.13
1927 5997 2.964978 CCCTTCTTGCTTTGCCGG 59.035 61.111 0.00 0.00 0.00 6.13
1928 5998 1.880819 ATGCCCTTCTTGCTTTGCCG 61.881 55.000 0.00 0.00 0.00 5.69
1929 5999 0.390735 CATGCCCTTCTTGCTTTGCC 60.391 55.000 0.00 0.00 0.00 4.52
1930 6000 1.017701 GCATGCCCTTCTTGCTTTGC 61.018 55.000 6.36 0.00 41.21 3.68
1931 6001 0.390735 GGCATGCCCTTCTTGCTTTG 60.391 55.000 27.24 0.00 43.21 2.77
1932 6002 1.880819 CGGCATGCCCTTCTTGCTTT 61.881 55.000 30.79 0.00 43.21 3.51
1933 6003 2.345760 CGGCATGCCCTTCTTGCTT 61.346 57.895 30.79 0.00 43.21 3.91
1934 6004 2.753043 CGGCATGCCCTTCTTGCT 60.753 61.111 30.79 0.00 43.21 3.91
1935 6005 4.503314 GCGGCATGCCCTTCTTGC 62.503 66.667 30.79 22.30 43.01 4.01
1957 6027 3.546714 AAGGTTTGGGAGACGGCGG 62.547 63.158 13.24 0.00 0.00 6.13
1958 6028 2.032071 AAGGTTTGGGAGACGGCG 59.968 61.111 4.80 4.80 0.00 6.46
1998 6068 2.259511 CCTTCTTGCTTTGCCGGC 59.740 61.111 22.73 22.73 0.00 6.13
2001 6071 0.390735 CATGCCCTTCTTGCTTTGCC 60.391 55.000 0.00 0.00 0.00 4.52
2228 6301 3.188786 GCACGGCGACATGTCCTC 61.189 66.667 20.03 11.68 0.00 3.71
2295 6407 1.495584 CCACACGTCCGACTGGTTTG 61.496 60.000 0.00 0.00 36.30 2.93
2307 6419 2.054458 TGGCATAGACACCACACGT 58.946 52.632 0.00 0.00 0.00 4.49
2356 6468 2.045926 AGAAGGCGGCATGGTCAC 60.046 61.111 13.08 0.00 0.00 3.67
2359 6471 2.424842 TTTGGAGAAGGCGGCATGGT 62.425 55.000 13.08 0.00 0.00 3.55
2367 6479 2.694760 CGCTGGCTTTGGAGAAGGC 61.695 63.158 5.49 5.49 42.45 4.35
2384 6496 4.953868 TGGACACCGCACGTTCCG 62.954 66.667 0.00 0.00 0.00 4.30
2447 6559 1.738099 CCGGCCAGTTTCTGAGACG 60.738 63.158 2.24 3.05 34.58 4.18
2448 6560 1.376037 CCCGGCCAGTTTCTGAGAC 60.376 63.158 2.24 0.00 32.44 3.36
2449 6561 3.068881 CCCGGCCAGTTTCTGAGA 58.931 61.111 2.24 0.00 32.44 3.27
2450 6562 2.747855 GCCCGGCCAGTTTCTGAG 60.748 66.667 2.24 0.00 32.44 3.35
2473 6585 4.760047 AGACGGCGGCATGGACAC 62.760 66.667 18.30 0.00 0.00 3.67
2474 6586 4.451150 GAGACGGCGGCATGGACA 62.451 66.667 18.30 0.00 0.00 4.02
2868 7019 1.103398 GCATAGACACCACATGCCCC 61.103 60.000 0.00 0.00 39.30 5.80
2895 7140 0.591659 GTTCAACTGGTTTCGGAGGC 59.408 55.000 0.00 0.00 0.00 4.70
2898 7143 1.292061 CACGTTCAACTGGTTTCGGA 58.708 50.000 0.00 0.00 0.00 4.55
2910 7155 1.163420 GCATGGACACCACACGTTCA 61.163 55.000 0.00 0.00 35.80 3.18
3082 7609 3.599285 TTGTAGACGGCGGCAAGGG 62.599 63.158 18.30 0.00 0.00 3.95
3097 7624 1.319614 ACTTGTGCCGCTGGTTTTGT 61.320 50.000 0.00 0.00 0.00 2.83
3240 7773 4.388499 ACATGTCCGGCCGGTGTC 62.388 66.667 41.57 30.54 36.47 3.67
3286 7822 2.741985 CGGCACAGCATGAACGGA 60.742 61.111 0.00 0.00 39.69 4.69
3288 7824 4.465512 GGCGGCACAGCATGAACG 62.466 66.667 3.07 0.00 39.69 3.95
3297 7833 1.228398 TTTTGGAGATGGCGGCACA 60.228 52.632 16.34 4.53 0.00 4.57
3315 7851 0.603707 CAGCCACATTCGTGACTGGT 60.604 55.000 1.44 0.00 46.54 4.00
3316 7852 2.165380 CAGCCACATTCGTGACTGG 58.835 57.895 1.44 0.00 46.54 4.00
3319 7855 1.207593 GCACAGCCACATTCGTGAC 59.792 57.895 0.00 0.00 46.80 3.67
3320 7856 3.654201 GCACAGCCACATTCGTGA 58.346 55.556 0.00 0.00 46.80 4.35
3333 7872 4.243008 TTTGGAGACGGCGGCACA 62.243 61.111 18.30 11.44 0.00 4.57
3388 7927 2.824041 CACCTGGCCGTATGGTGC 60.824 66.667 19.23 0.00 43.61 5.01
3389 7928 2.966732 ACCACCTGGCCGTATGGTG 61.967 63.158 20.58 21.54 43.88 4.17
3390 7929 2.609610 ACCACCTGGCCGTATGGT 60.610 61.111 16.75 16.75 40.71 3.55
3400 7939 2.747460 CGGCATGGACACCACCTG 60.747 66.667 0.00 0.00 35.80 4.00
3401 7940 4.722700 GCGGCATGGACACCACCT 62.723 66.667 0.00 0.00 35.80 4.00
3479 8018 4.012895 GCGGCGACACAACCACAG 62.013 66.667 12.98 0.00 0.00 3.66
3485 8024 3.758973 TTTGGAGGCGGCGACACAA 62.759 57.895 18.30 17.59 0.00 3.33
3486 8025 3.758973 TTTTGGAGGCGGCGACACA 62.759 57.895 18.30 11.44 0.00 3.72
3490 8029 4.257654 TGGTTTTGGAGGCGGCGA 62.258 61.111 12.98 0.00 0.00 5.54
3630 8169 2.899838 GGTGCGACTTGTGGTGCA 60.900 61.111 0.00 0.00 32.58 4.57
3660 8199 3.881089 TCTTAGACACAGACACTTGACGA 59.119 43.478 0.00 0.00 0.00 4.20
3711 8250 9.508642 AAGCTATAAATTGGGATCTTTAGCTAC 57.491 33.333 0.00 0.00 0.00 3.58
3714 8253 8.396272 TCAAGCTATAAATTGGGATCTTTAGC 57.604 34.615 0.00 0.00 0.00 3.09
3916 8490 6.612306 AGGTAGTTTGAGCAAATCGATTTTC 58.388 36.000 20.56 16.06 32.36 2.29
3917 8491 6.575162 AGGTAGTTTGAGCAAATCGATTTT 57.425 33.333 20.56 7.72 32.36 1.82
3938 8513 7.225538 CAGTACTAAGATCCACTGCAATTTAGG 59.774 40.741 0.00 0.00 32.72 2.69
3984 8559 7.096477 GCTCACAAAGACACAAACATCATTTAC 60.096 37.037 0.00 0.00 0.00 2.01
3998 8573 4.515191 GGTTTCAGTATGCTCACAAAGACA 59.485 41.667 0.00 0.00 34.76 3.41
3999 8574 4.757149 AGGTTTCAGTATGCTCACAAAGAC 59.243 41.667 0.00 0.00 34.76 3.01
4000 8575 4.973168 AGGTTTCAGTATGCTCACAAAGA 58.027 39.130 0.00 0.00 34.76 2.52
4001 8576 6.992063 ATAGGTTTCAGTATGCTCACAAAG 57.008 37.500 0.00 0.00 34.76 2.77
4002 8577 8.046708 ACATATAGGTTTCAGTATGCTCACAAA 58.953 33.333 0.00 0.00 34.76 2.83
4003 8578 7.495606 CACATATAGGTTTCAGTATGCTCACAA 59.504 37.037 0.00 0.00 34.76 3.33
4004 8579 6.986231 CACATATAGGTTTCAGTATGCTCACA 59.014 38.462 0.00 0.00 34.76 3.58
4005 8580 6.425114 CCACATATAGGTTTCAGTATGCTCAC 59.575 42.308 0.00 0.00 34.76 3.51
4024 8599 5.694006 GCAAATTGCACAAAACTACCACATA 59.306 36.000 13.73 0.00 44.26 2.29
4061 8636 7.928307 AACACATAAATCTCTGCAACTATGT 57.072 32.000 0.00 0.00 31.76 2.29
4078 8653 6.825944 TGCCTTACAAATAGCAAACACATA 57.174 33.333 0.00 0.00 30.97 2.29
4106 8683 9.406828 CGAATCGATTAATACCAAATCTAGTCA 57.593 33.333 11.38 0.00 32.29 3.41
4109 8686 8.033038 TCCCGAATCGATTAATACCAAATCTAG 58.967 37.037 11.38 0.00 32.29 2.43
4120 8697 5.047660 CCTCTTCTCTCCCGAATCGATTAAT 60.048 44.000 11.38 0.00 0.00 1.40
4124 8701 2.158593 TCCTCTTCTCTCCCGAATCGAT 60.159 50.000 3.36 0.00 0.00 3.59
4143 8720 2.743928 CCACAGAGTTGCGCCTCC 60.744 66.667 4.18 0.00 31.53 4.30
4158 8735 2.895680 CCGCTAGAAGCTCTGCCA 59.104 61.111 0.00 0.00 39.60 4.92
4179 8756 1.738099 CCTCGAGCCTTGTTGTCGG 60.738 63.158 6.99 0.00 34.43 4.79
4195 8772 1.949847 CTTGACCTCGACGGCATCCT 61.950 60.000 0.00 0.00 35.61 3.24
4203 8780 0.603569 TCTTCTGGCTTGACCTCGAC 59.396 55.000 0.00 0.00 40.22 4.20
4217 8794 2.663196 CGGCTCCGGGTTTCTTCT 59.337 61.111 0.00 0.00 35.56 2.85
4268 8845 4.627467 CCTTGATTCGTCTACCTTTGACTG 59.373 45.833 0.00 0.00 32.70 3.51
4274 8851 3.195825 CCACTCCTTGATTCGTCTACCTT 59.804 47.826 0.00 0.00 0.00 3.50
4279 8856 0.905357 CCCCACTCCTTGATTCGTCT 59.095 55.000 0.00 0.00 0.00 4.18
4305 8882 0.108615 TGCTCTTCTCTAGCGTTGGC 60.109 55.000 0.00 0.00 43.11 4.52
4307 8884 1.470632 CCCTGCTCTTCTCTAGCGTTG 60.471 57.143 0.00 0.00 43.11 4.10
4314 8891 0.033991 TCTACGCCCTGCTCTTCTCT 60.034 55.000 0.00 0.00 0.00 3.10
4325 8902 2.844839 AGGCATCCCTCTACGCCC 60.845 66.667 0.00 0.00 46.08 6.13
4328 8905 1.467678 CCTCCAGGCATCCCTCTACG 61.468 65.000 0.00 0.00 40.33 3.51
4332 8909 3.174265 CCCCTCCAGGCATCCCTC 61.174 72.222 0.00 0.00 40.33 4.30
4395 8972 2.434359 GCTGCCACCACCTACGAC 60.434 66.667 0.00 0.00 0.00 4.34
4419 8996 4.936891 TCAACTCATGTATCATCGGTCTG 58.063 43.478 0.00 0.00 0.00 3.51
4420 8997 4.038522 CCTCAACTCATGTATCATCGGTCT 59.961 45.833 0.00 0.00 0.00 3.85
4424 9001 4.053983 CACCCTCAACTCATGTATCATCG 58.946 47.826 0.00 0.00 0.00 3.84
4429 9006 2.092753 CCAGCACCCTCAACTCATGTAT 60.093 50.000 0.00 0.00 0.00 2.29
4438 9015 2.673775 TTGAAATCCAGCACCCTCAA 57.326 45.000 0.00 0.00 0.00 3.02
4441 9018 5.222007 CCTCTATATTGAAATCCAGCACCCT 60.222 44.000 0.00 0.00 0.00 4.34
4442 9019 5.006386 CCTCTATATTGAAATCCAGCACCC 58.994 45.833 0.00 0.00 0.00 4.61
4443 9020 5.869579 TCCTCTATATTGAAATCCAGCACC 58.130 41.667 0.00 0.00 0.00 5.01
4444 9021 5.936956 CCTCCTCTATATTGAAATCCAGCAC 59.063 44.000 0.00 0.00 0.00 4.40
4445 9022 5.846164 TCCTCCTCTATATTGAAATCCAGCA 59.154 40.000 0.00 0.00 0.00 4.41
4446 9023 6.212388 TCTCCTCCTCTATATTGAAATCCAGC 59.788 42.308 0.00 0.00 0.00 4.85
4447 9024 7.789202 TCTCCTCCTCTATATTGAAATCCAG 57.211 40.000 0.00 0.00 0.00 3.86
4448 9025 8.013072 TCTTCTCCTCCTCTATATTGAAATCCA 58.987 37.037 0.00 0.00 0.00 3.41
4449 9026 8.429237 TCTTCTCCTCCTCTATATTGAAATCC 57.571 38.462 0.00 0.00 0.00 3.01
4450 9027 9.927668 CTTCTTCTCCTCCTCTATATTGAAATC 57.072 37.037 0.00 0.00 0.00 2.17
4451 9028 8.879227 CCTTCTTCTCCTCCTCTATATTGAAAT 58.121 37.037 0.00 0.00 0.00 2.17
4452 9029 8.068110 TCCTTCTTCTCCTCCTCTATATTGAAA 58.932 37.037 0.00 0.00 0.00 2.69
4453 9030 7.596407 TCCTTCTTCTCCTCCTCTATATTGAA 58.404 38.462 0.00 0.00 0.00 2.69
4454 9031 7.074366 TCTCCTTCTTCTCCTCCTCTATATTGA 59.926 40.741 0.00 0.00 0.00 2.57
4455 9032 7.237982 TCTCCTTCTTCTCCTCCTCTATATTG 58.762 42.308 0.00 0.00 0.00 1.90
4456 9033 7.415004 TCTCCTTCTTCTCCTCCTCTATATT 57.585 40.000 0.00 0.00 0.00 1.28
4457 9034 7.297108 TCTTCTCCTTCTTCTCCTCCTCTATAT 59.703 40.741 0.00 0.00 0.00 0.86
4458 9035 6.621931 TCTTCTCCTTCTTCTCCTCCTCTATA 59.378 42.308 0.00 0.00 0.00 1.31
4459 9036 5.435041 TCTTCTCCTTCTTCTCCTCCTCTAT 59.565 44.000 0.00 0.00 0.00 1.98
4460 9037 4.791334 TCTTCTCCTTCTTCTCCTCCTCTA 59.209 45.833 0.00 0.00 0.00 2.43
4461 9038 3.596046 TCTTCTCCTTCTTCTCCTCCTCT 59.404 47.826 0.00 0.00 0.00 3.69
4462 9039 3.976015 TCTTCTCCTTCTTCTCCTCCTC 58.024 50.000 0.00 0.00 0.00 3.71
4463 9040 4.289245 CATCTTCTCCTTCTTCTCCTCCT 58.711 47.826 0.00 0.00 0.00 3.69
4464 9041 3.387699 CCATCTTCTCCTTCTTCTCCTCC 59.612 52.174 0.00 0.00 0.00 4.30
4465 9042 3.181466 GCCATCTTCTCCTTCTTCTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
4466 9043 2.771372 GCCATCTTCTCCTTCTTCTCCT 59.229 50.000 0.00 0.00 0.00 3.69
4467 9044 2.158827 GGCCATCTTCTCCTTCTTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
4468 9045 2.771372 AGGCCATCTTCTCCTTCTTCTC 59.229 50.000 5.01 0.00 0.00 2.87
4469 9046 2.844369 AGGCCATCTTCTCCTTCTTCT 58.156 47.619 5.01 0.00 0.00 2.85
4470 9047 4.972751 ATAGGCCATCTTCTCCTTCTTC 57.027 45.455 5.01 0.00 0.00 2.87
4471 9048 4.476479 ACAATAGGCCATCTTCTCCTTCTT 59.524 41.667 5.01 0.00 0.00 2.52
4472 9049 4.043596 ACAATAGGCCATCTTCTCCTTCT 58.956 43.478 5.01 0.00 0.00 2.85
4473 9050 4.429854 ACAATAGGCCATCTTCTCCTTC 57.570 45.455 5.01 0.00 0.00 3.46
4474 9051 4.530875 CAACAATAGGCCATCTTCTCCTT 58.469 43.478 5.01 0.00 0.00 3.36
4475 9052 3.117738 CCAACAATAGGCCATCTTCTCCT 60.118 47.826 5.01 0.00 0.00 3.69
4476 9053 3.117888 TCCAACAATAGGCCATCTTCTCC 60.118 47.826 5.01 0.00 0.00 3.71
4477 9054 4.156455 TCCAACAATAGGCCATCTTCTC 57.844 45.455 5.01 0.00 0.00 2.87
4478 9055 4.803329 ATCCAACAATAGGCCATCTTCT 57.197 40.909 5.01 0.00 0.00 2.85
4479 9056 6.959639 TTAATCCAACAATAGGCCATCTTC 57.040 37.500 5.01 0.00 0.00 2.87
4480 9057 7.732222 TTTTAATCCAACAATAGGCCATCTT 57.268 32.000 5.01 0.00 0.00 2.40
4481 9058 7.919385 ATTTTAATCCAACAATAGGCCATCT 57.081 32.000 5.01 0.00 0.00 2.90
4501 9293 0.321298 CCCGTCACCTGTCGGATTTT 60.321 55.000 11.86 0.00 46.88 1.82
4532 9325 3.850173 GGGATTAATCTATGGGGCCTACA 59.150 47.826 14.95 2.26 0.00 2.74
4538 9331 8.805145 AGTATGATAGGGATTAATCTATGGGG 57.195 38.462 14.95 0.00 0.00 4.96
4564 9357 8.630037 GGTGGAGAGTAATCTTTTCTTTTCAAA 58.370 33.333 0.00 0.00 0.00 2.69
4600 9393 1.140312 ATATGGCCATCCCTTCGTGT 58.860 50.000 24.80 0.00 0.00 4.49
4636 9429 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
4637 9430 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
4639 9432 9.856162 TCATGATTGAAGATGAATAGATTGGAA 57.144 29.630 0.00 0.00 0.00 3.53
4649 9442 9.034544 CGTTGTACTATCATGATTGAAGATGAA 57.965 33.333 21.64 4.00 34.96 2.57
4650 9443 8.413229 TCGTTGTACTATCATGATTGAAGATGA 58.587 33.333 21.64 12.27 34.96 2.92
4651 9444 8.579682 TCGTTGTACTATCATGATTGAAGATG 57.420 34.615 21.64 10.62 34.96 2.90
4652 9445 9.770097 ATTCGTTGTACTATCATGATTGAAGAT 57.230 29.630 21.64 4.07 34.96 2.40
4689 9482 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
4690 9483 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
4691 9484 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
4692 9485 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
4693 9486 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
4694 9487 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
4695 9488 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
4696 9489 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
4697 9490 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
4698 9491 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
4699 9492 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
4700 9493 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
4701 9494 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
4702 9495 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
4703 9496 2.619177 CACTAGGTGGTCTACGGATCTG 59.381 54.545 0.00 0.00 0.00 2.90
4704 9497 2.508716 TCACTAGGTGGTCTACGGATCT 59.491 50.000 0.00 0.00 33.87 2.75
4705 9498 2.617774 GTCACTAGGTGGTCTACGGATC 59.382 54.545 0.00 0.00 33.87 3.36
4706 9499 2.652590 GTCACTAGGTGGTCTACGGAT 58.347 52.381 0.00 0.00 33.87 4.18
4707 9500 1.676916 CGTCACTAGGTGGTCTACGGA 60.677 57.143 0.00 0.00 33.87 4.69
4708 9501 0.731417 CGTCACTAGGTGGTCTACGG 59.269 60.000 0.00 0.00 33.87 4.02
4709 9502 1.396301 GTCGTCACTAGGTGGTCTACG 59.604 57.143 0.00 0.00 33.87 3.51
4710 9503 2.709213 AGTCGTCACTAGGTGGTCTAC 58.291 52.381 0.00 0.00 33.87 2.59
4711 9504 3.261643 TGTAGTCGTCACTAGGTGGTCTA 59.738 47.826 0.00 0.00 35.67 2.59
4712 9505 2.039480 TGTAGTCGTCACTAGGTGGTCT 59.961 50.000 0.00 0.00 35.67 3.85
4713 9506 2.430465 TGTAGTCGTCACTAGGTGGTC 58.570 52.381 0.00 0.00 35.67 4.02
4714 9507 2.574006 TGTAGTCGTCACTAGGTGGT 57.426 50.000 0.00 0.00 35.67 4.16
4715 9508 2.415625 GCTTGTAGTCGTCACTAGGTGG 60.416 54.545 0.00 0.00 35.67 4.61
4716 9509 2.228103 TGCTTGTAGTCGTCACTAGGTG 59.772 50.000 0.00 0.00 35.67 4.00
4717 9510 2.228343 GTGCTTGTAGTCGTCACTAGGT 59.772 50.000 0.00 0.00 35.67 3.08
4718 9511 2.488545 AGTGCTTGTAGTCGTCACTAGG 59.511 50.000 0.00 0.00 35.67 3.02
4719 9512 3.188667 TCAGTGCTTGTAGTCGTCACTAG 59.811 47.826 0.00 0.00 35.67 2.57
4720 9513 3.143728 TCAGTGCTTGTAGTCGTCACTA 58.856 45.455 0.00 0.00 36.37 2.74
4721 9514 1.954382 TCAGTGCTTGTAGTCGTCACT 59.046 47.619 0.00 0.00 38.40 3.41
4722 9515 2.417339 TCAGTGCTTGTAGTCGTCAC 57.583 50.000 0.00 0.00 0.00 3.67
4723 9516 2.862530 GCTTCAGTGCTTGTAGTCGTCA 60.863 50.000 0.00 0.00 0.00 4.35
4724 9517 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
4725 9518 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
4726 9519 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
4727 9520 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
4728 9521 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
4729 9522 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
4730 9523 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
4731 9524 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
4732 9525 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
4733 9526 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
4734 9527 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
4735 9528 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
4736 9529 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
4737 9530 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
4738 9531 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
4759 9552 4.899239 GAGGGGCGATGACAGCGG 62.899 72.222 15.74 0.00 35.00 5.52
4760 9553 4.899239 GGAGGGGCGATGACAGCG 62.899 72.222 9.11 9.11 35.00 5.18
4761 9554 4.554036 GGGAGGGGCGATGACAGC 62.554 72.222 0.00 0.00 0.00 4.40
4762 9555 2.765807 AGGGAGGGGCGATGACAG 60.766 66.667 0.00 0.00 0.00 3.51
4763 9556 2.764128 GAGGGAGGGGCGATGACA 60.764 66.667 0.00 0.00 0.00 3.58
4764 9557 3.917760 CGAGGGAGGGGCGATGAC 61.918 72.222 0.00 0.00 0.00 3.06
4784 9577 4.038080 CAACGTTTGCCCGGCTCC 62.038 66.667 11.61 0.00 0.00 4.70
4785 9578 3.284449 ACAACGTTTGCCCGGCTC 61.284 61.111 11.61 0.49 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.