Multiple sequence alignment - TraesCS2D01G119200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G119200 chr2D 100.000 3889 0 0 1 3889 68789562 68793450 0.000000e+00 7182.0
1 TraesCS2D01G119200 chr2D 94.400 250 14 0 1424 1673 69131858 69132107 6.100000e-103 385.0
2 TraesCS2D01G119200 chr2B 92.045 2816 129 35 444 3195 102030155 102027371 0.000000e+00 3871.0
3 TraesCS2D01G119200 chr2B 90.278 504 41 6 3179 3680 102027352 102026855 0.000000e+00 652.0
4 TraesCS2D01G119200 chr2A 95.388 1496 60 6 1418 2904 66313016 66311521 0.000000e+00 2372.0
5 TraesCS2D01G119200 chr2A 92.829 1004 59 9 2891 3889 66305984 66304989 0.000000e+00 1443.0
6 TraesCS2D01G119200 chr2A 77.175 977 109 48 449 1377 66313922 66313012 7.610000e-127 464.0
7 TraesCS2D01G119200 chr2A 92.429 317 20 3 132 445 52240311 52239996 2.130000e-122 449.0
8 TraesCS2D01G119200 chr6B 91.964 448 32 3 1 445 641417808 641417362 3.300000e-175 625.0
9 TraesCS2D01G119200 chr1B 90.541 444 39 3 7 448 181107940 181107498 5.600000e-163 584.0
10 TraesCS2D01G119200 chr1B 74.848 660 134 23 3159 3811 10907740 10908374 1.780000e-68 270.0
11 TraesCS2D01G119200 chr4D 82.817 355 51 8 3259 3607 466319973 466319623 3.770000e-80 309.0
12 TraesCS2D01G119200 chr4D 81.948 349 45 11 3259 3604 471173598 471173931 2.960000e-71 279.0
13 TraesCS2D01G119200 chr3B 75.340 661 130 20 3158 3811 49423394 49422760 1.770000e-73 287.0
14 TraesCS2D01G119200 chr1D 75.301 664 130 22 3155 3811 59194099 59194735 1.770000e-73 287.0
15 TraesCS2D01G119200 chr5A 74.813 667 131 24 3155 3811 119056072 119056711 2.300000e-67 267.0
16 TraesCS2D01G119200 chr5A 74.771 654 125 27 3155 3798 553377213 553377836 1.390000e-64 257.0
17 TraesCS2D01G119200 chr4B 74.584 661 134 21 3158 3811 609696336 609695703 3.850000e-65 259.0
18 TraesCS2D01G119200 chr1A 76.829 246 49 7 3158 3398 24807377 24807135 8.770000e-27 132.0
19 TraesCS2D01G119200 chr7D 97.143 35 1 0 821 855 89265899 89265933 4.200000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G119200 chr2D 68789562 68793450 3888 False 7182.0 7182 100.0000 1 3889 1 chr2D.!!$F1 3888
1 TraesCS2D01G119200 chr2B 102026855 102030155 3300 True 2261.5 3871 91.1615 444 3680 2 chr2B.!!$R1 3236
2 TraesCS2D01G119200 chr2A 66304989 66305984 995 True 1443.0 1443 92.8290 2891 3889 1 chr2A.!!$R2 998
3 TraesCS2D01G119200 chr2A 66311521 66313922 2401 True 1418.0 2372 86.2815 449 2904 2 chr2A.!!$R3 2455
4 TraesCS2D01G119200 chr1B 10907740 10908374 634 False 270.0 270 74.8480 3159 3811 1 chr1B.!!$F1 652
5 TraesCS2D01G119200 chr3B 49422760 49423394 634 True 287.0 287 75.3400 3158 3811 1 chr3B.!!$R1 653
6 TraesCS2D01G119200 chr1D 59194099 59194735 636 False 287.0 287 75.3010 3155 3811 1 chr1D.!!$F1 656
7 TraesCS2D01G119200 chr5A 119056072 119056711 639 False 267.0 267 74.8130 3155 3811 1 chr5A.!!$F1 656
8 TraesCS2D01G119200 chr5A 553377213 553377836 623 False 257.0 257 74.7710 3155 3798 1 chr5A.!!$F2 643
9 TraesCS2D01G119200 chr4B 609695703 609696336 633 True 259.0 259 74.5840 3158 3811 1 chr4B.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.036875 GGTTCTGGTGTCTTCTGGGG 59.963 60.0 0.00 0.0 0.00 4.96 F
56 57 0.036875 GTTCTGGTGTCTTCTGGGGG 59.963 60.0 0.00 0.0 0.00 5.40 F
255 256 0.037326 TCGCGAGATCAACCAAAGCT 60.037 50.0 3.71 0.0 33.31 3.74 F
319 320 0.037447 TCGAATGTCCATGCCCACAA 59.963 50.0 0.00 0.0 0.00 3.33 F
326 327 0.403655 TCCATGCCCACAAACTAGCA 59.596 50.0 0.00 0.0 40.00 3.49 F
2480 2579 0.040499 ACGAGCTCCTCTCCCTTCTT 59.960 55.0 8.47 0.0 38.62 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1296 0.326264 ACGCAGAAGAAGAAGGCCAT 59.674 50.000 5.01 0.0 0.00 4.40 R
1360 1438 1.227823 CCGCACCTGTCCTTGTCAA 60.228 57.895 0.00 0.0 0.00 3.18 R
2129 2228 0.182775 ACCAGAACACGCCCTTCTTT 59.817 50.000 0.00 0.0 0.00 2.52 R
2134 2233 4.003788 CCGACCAGAACACGCCCT 62.004 66.667 0.00 0.0 0.00 5.19 R
2738 2837 1.736586 CCAGCCTAGCGTCTGGTAG 59.263 63.158 12.94 0.0 43.66 3.18 R
3374 3518 2.582052 ACATTTCCCGTTCTTCTTGCA 58.418 42.857 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.545841 GGAAGTTTTGGGGCTGTAGG 58.454 55.000 0.00 0.00 0.00 3.18
20 21 0.888619 GAAGTTTTGGGGCTGTAGGC 59.111 55.000 0.00 0.00 40.90 3.93
21 22 0.893727 AAGTTTTGGGGCTGTAGGCG 60.894 55.000 0.00 0.00 42.94 5.52
29 30 3.080647 GGCTGTAGGCGCTATTTGT 57.919 52.632 7.64 0.00 42.94 2.83
30 31 0.938008 GGCTGTAGGCGCTATTTGTC 59.062 55.000 7.64 0.00 42.94 3.18
31 32 0.577269 GCTGTAGGCGCTATTTGTCG 59.423 55.000 7.64 0.00 0.00 4.35
32 33 1.922570 CTGTAGGCGCTATTTGTCGT 58.077 50.000 7.64 0.00 0.00 4.34
33 34 1.588404 CTGTAGGCGCTATTTGTCGTG 59.412 52.381 7.64 0.00 0.00 4.35
34 35 1.202817 TGTAGGCGCTATTTGTCGTGA 59.797 47.619 7.64 0.00 0.00 4.35
35 36 1.587034 GTAGGCGCTATTTGTCGTGAC 59.413 52.381 7.64 0.00 0.00 3.67
36 37 1.076533 AGGCGCTATTTGTCGTGACG 61.077 55.000 7.64 0.00 0.00 4.35
37 38 1.343821 GCGCTATTTGTCGTGACGG 59.656 57.895 4.70 0.00 0.00 4.79
38 39 1.349259 GCGCTATTTGTCGTGACGGT 61.349 55.000 4.70 0.00 0.00 4.83
39 40 1.065358 CGCTATTTGTCGTGACGGTT 58.935 50.000 4.70 0.00 0.00 4.44
40 41 1.058695 CGCTATTTGTCGTGACGGTTC 59.941 52.381 4.70 0.00 0.00 3.62
41 42 2.334838 GCTATTTGTCGTGACGGTTCT 58.665 47.619 4.70 0.00 0.00 3.01
42 43 2.092211 GCTATTTGTCGTGACGGTTCTG 59.908 50.000 4.70 0.00 0.00 3.02
43 44 1.508632 ATTTGTCGTGACGGTTCTGG 58.491 50.000 4.70 0.00 0.00 3.86
44 45 0.176219 TTTGTCGTGACGGTTCTGGT 59.824 50.000 4.70 0.00 0.00 4.00
45 46 0.528901 TTGTCGTGACGGTTCTGGTG 60.529 55.000 4.70 0.00 0.00 4.17
46 47 1.066918 GTCGTGACGGTTCTGGTGT 59.933 57.895 4.70 0.00 0.00 4.16
47 48 0.938168 GTCGTGACGGTTCTGGTGTC 60.938 60.000 4.70 0.00 0.00 3.67
48 49 1.105167 TCGTGACGGTTCTGGTGTCT 61.105 55.000 4.70 0.00 33.81 3.41
49 50 0.249322 CGTGACGGTTCTGGTGTCTT 60.249 55.000 0.00 0.00 33.81 3.01
50 51 1.499049 GTGACGGTTCTGGTGTCTTC 58.501 55.000 0.00 0.00 33.81 2.87
51 52 1.068741 GTGACGGTTCTGGTGTCTTCT 59.931 52.381 0.00 0.00 33.81 2.85
52 53 1.068588 TGACGGTTCTGGTGTCTTCTG 59.931 52.381 0.00 0.00 33.81 3.02
53 54 0.393077 ACGGTTCTGGTGTCTTCTGG 59.607 55.000 0.00 0.00 0.00 3.86
54 55 0.320771 CGGTTCTGGTGTCTTCTGGG 60.321 60.000 0.00 0.00 0.00 4.45
55 56 0.036875 GGTTCTGGTGTCTTCTGGGG 59.963 60.000 0.00 0.00 0.00 4.96
56 57 0.036875 GTTCTGGTGTCTTCTGGGGG 59.963 60.000 0.00 0.00 0.00 5.40
70 71 4.052518 GGGGGCATCAGCTGTGGT 62.053 66.667 14.67 0.00 41.70 4.16
71 72 2.036256 GGGGCATCAGCTGTGGTT 59.964 61.111 14.67 0.00 41.70 3.67
72 73 1.607467 GGGGCATCAGCTGTGGTTT 60.607 57.895 14.67 0.00 41.70 3.27
73 74 1.187567 GGGGCATCAGCTGTGGTTTT 61.188 55.000 14.67 0.00 41.70 2.43
74 75 0.244721 GGGCATCAGCTGTGGTTTTC 59.755 55.000 14.67 0.00 41.70 2.29
75 76 0.961019 GGCATCAGCTGTGGTTTTCA 59.039 50.000 14.67 0.00 41.70 2.69
76 77 1.068055 GGCATCAGCTGTGGTTTTCAG 60.068 52.381 14.67 0.00 41.70 3.02
77 78 1.068055 GCATCAGCTGTGGTTTTCAGG 60.068 52.381 14.67 0.00 37.91 3.86
78 79 2.507484 CATCAGCTGTGGTTTTCAGGA 58.493 47.619 14.67 0.00 33.98 3.86
79 80 2.727123 TCAGCTGTGGTTTTCAGGAA 57.273 45.000 14.67 0.00 33.98 3.36
80 81 3.228188 TCAGCTGTGGTTTTCAGGAAT 57.772 42.857 14.67 0.00 33.98 3.01
81 82 4.365514 TCAGCTGTGGTTTTCAGGAATA 57.634 40.909 14.67 0.00 33.98 1.75
82 83 4.922206 TCAGCTGTGGTTTTCAGGAATAT 58.078 39.130 14.67 0.00 33.98 1.28
83 84 5.324409 TCAGCTGTGGTTTTCAGGAATATT 58.676 37.500 14.67 0.00 33.98 1.28
84 85 5.183713 TCAGCTGTGGTTTTCAGGAATATTG 59.816 40.000 14.67 0.00 33.98 1.90
85 86 5.183713 CAGCTGTGGTTTTCAGGAATATTGA 59.816 40.000 5.25 0.00 33.98 2.57
86 87 5.416952 AGCTGTGGTTTTCAGGAATATTGAG 59.583 40.000 0.00 0.00 33.98 3.02
87 88 5.393461 GCTGTGGTTTTCAGGAATATTGAGG 60.393 44.000 0.00 0.00 33.98 3.86
88 89 5.886609 TGTGGTTTTCAGGAATATTGAGGA 58.113 37.500 0.00 0.00 0.00 3.71
89 90 6.493166 TGTGGTTTTCAGGAATATTGAGGAT 58.507 36.000 0.00 0.00 0.00 3.24
90 91 6.603201 TGTGGTTTTCAGGAATATTGAGGATC 59.397 38.462 0.00 0.00 0.00 3.36
91 92 6.039829 GTGGTTTTCAGGAATATTGAGGATCC 59.960 42.308 2.48 2.48 0.00 3.36
92 93 6.068853 TGGTTTTCAGGAATATTGAGGATCCT 60.069 38.462 16.13 16.13 43.00 3.24
97 98 4.837218 AGGAATATTGAGGATCCTGAGGT 58.163 43.478 22.02 6.20 40.73 3.85
98 99 4.596643 AGGAATATTGAGGATCCTGAGGTG 59.403 45.833 22.02 0.00 40.73 4.00
99 100 4.322567 GAATATTGAGGATCCTGAGGTGC 58.677 47.826 22.02 3.64 0.00 5.01
100 101 1.890552 ATTGAGGATCCTGAGGTGCT 58.109 50.000 22.02 0.00 0.00 4.40
101 102 0.907486 TTGAGGATCCTGAGGTGCTG 59.093 55.000 22.02 0.00 0.00 4.41
102 103 0.979709 TGAGGATCCTGAGGTGCTGG 60.980 60.000 22.02 0.00 36.97 4.85
103 104 0.689080 GAGGATCCTGAGGTGCTGGA 60.689 60.000 22.02 0.00 46.94 3.86
104 105 0.252881 AGGATCCTGAGGTGCTGGAA 60.253 55.000 15.29 0.00 46.16 3.53
105 106 0.179936 GGATCCTGAGGTGCTGGAAG 59.820 60.000 3.84 0.00 46.16 3.46
119 120 2.972625 CTGGAAGCGTTGGTGATTAGA 58.027 47.619 0.00 0.00 0.00 2.10
120 121 2.932614 CTGGAAGCGTTGGTGATTAGAG 59.067 50.000 0.00 0.00 0.00 2.43
121 122 2.565391 TGGAAGCGTTGGTGATTAGAGA 59.435 45.455 0.00 0.00 0.00 3.10
122 123 3.190874 GGAAGCGTTGGTGATTAGAGAG 58.809 50.000 0.00 0.00 0.00 3.20
123 124 2.969628 AGCGTTGGTGATTAGAGAGG 57.030 50.000 0.00 0.00 0.00 3.69
124 125 1.134670 AGCGTTGGTGATTAGAGAGGC 60.135 52.381 0.00 0.00 0.00 4.70
125 126 1.134670 GCGTTGGTGATTAGAGAGGCT 60.135 52.381 0.00 0.00 0.00 4.58
126 127 2.815478 CGTTGGTGATTAGAGAGGCTC 58.185 52.381 6.34 6.34 0.00 4.70
127 128 2.428890 CGTTGGTGATTAGAGAGGCTCT 59.571 50.000 18.80 18.80 43.83 4.09
128 129 3.632604 CGTTGGTGATTAGAGAGGCTCTA 59.367 47.826 18.75 1.77 41.50 2.43
129 130 4.279671 CGTTGGTGATTAGAGAGGCTCTAT 59.720 45.833 18.75 17.72 41.87 1.98
130 131 5.563867 CGTTGGTGATTAGAGAGGCTCTATC 60.564 48.000 18.75 16.91 41.87 2.08
131 132 5.332106 TGGTGATTAGAGAGGCTCTATCT 57.668 43.478 18.75 14.03 41.87 1.98
132 133 5.321102 TGGTGATTAGAGAGGCTCTATCTC 58.679 45.833 18.75 16.30 41.87 2.75
140 141 5.982890 GAGAGGCTCTATCTCTAGCAAAT 57.017 43.478 18.75 0.00 41.23 2.32
141 142 5.713025 GAGAGGCTCTATCTCTAGCAAATG 58.287 45.833 18.75 0.00 41.23 2.32
142 143 5.392995 AGAGGCTCTATCTCTAGCAAATGA 58.607 41.667 17.09 0.00 39.57 2.57
143 144 5.243730 AGAGGCTCTATCTCTAGCAAATGAC 59.756 44.000 17.09 0.00 39.57 3.06
144 145 4.283212 AGGCTCTATCTCTAGCAAATGACC 59.717 45.833 0.00 0.00 40.61 4.02
145 146 4.283212 GGCTCTATCTCTAGCAAATGACCT 59.717 45.833 0.00 0.00 40.61 3.85
146 147 5.478679 GGCTCTATCTCTAGCAAATGACCTA 59.521 44.000 0.00 0.00 40.61 3.08
147 148 6.154363 GGCTCTATCTCTAGCAAATGACCTAT 59.846 42.308 0.00 0.00 40.61 2.57
148 149 7.340743 GGCTCTATCTCTAGCAAATGACCTATA 59.659 40.741 0.00 0.00 40.61 1.31
149 150 8.912988 GCTCTATCTCTAGCAAATGACCTATAT 58.087 37.037 0.00 0.00 38.63 0.86
178 179 9.662947 TCATAAGATATTAGTGGCATCTGATTG 57.337 33.333 0.00 0.00 0.00 2.67
179 180 6.814506 AAGATATTAGTGGCATCTGATTGC 57.185 37.500 0.00 0.00 42.01 3.56
180 181 5.872963 AGATATTAGTGGCATCTGATTGCA 58.127 37.500 12.03 0.00 44.59 4.08
181 182 6.301486 AGATATTAGTGGCATCTGATTGCAA 58.699 36.000 0.00 0.00 44.59 4.08
182 183 6.774170 AGATATTAGTGGCATCTGATTGCAAA 59.226 34.615 1.71 0.00 44.59 3.68
183 184 5.664294 ATTAGTGGCATCTGATTGCAAAA 57.336 34.783 1.71 0.00 44.59 2.44
184 185 5.664294 TTAGTGGCATCTGATTGCAAAAT 57.336 34.783 1.71 0.00 44.59 1.82
185 186 3.857052 AGTGGCATCTGATTGCAAAATG 58.143 40.909 1.71 6.67 44.59 2.32
186 187 2.933906 GTGGCATCTGATTGCAAAATGG 59.066 45.455 1.71 0.00 44.59 3.16
187 188 1.937899 GGCATCTGATTGCAAAATGGC 59.062 47.619 18.35 18.35 44.59 4.40
188 189 1.591158 GCATCTGATTGCAAAATGGCG 59.409 47.619 1.71 0.00 42.31 5.69
189 190 2.198406 CATCTGATTGCAAAATGGCGG 58.802 47.619 1.71 0.00 36.28 6.13
190 191 1.255882 TCTGATTGCAAAATGGCGGT 58.744 45.000 1.71 0.00 36.28 5.68
191 192 1.617850 TCTGATTGCAAAATGGCGGTT 59.382 42.857 1.71 0.00 36.28 4.44
192 193 1.727880 CTGATTGCAAAATGGCGGTTG 59.272 47.619 1.71 0.00 36.28 3.77
193 194 1.342496 TGATTGCAAAATGGCGGTTGA 59.658 42.857 1.71 0.00 36.28 3.18
194 195 2.224137 TGATTGCAAAATGGCGGTTGAA 60.224 40.909 1.71 0.00 36.28 2.69
195 196 1.863267 TTGCAAAATGGCGGTTGAAG 58.137 45.000 0.00 0.00 36.28 3.02
196 197 0.599728 TGCAAAATGGCGGTTGAAGC 60.600 50.000 0.00 0.00 36.28 3.86
197 198 0.319813 GCAAAATGGCGGTTGAAGCT 60.320 50.000 0.00 0.00 34.52 3.74
198 199 1.067915 GCAAAATGGCGGTTGAAGCTA 60.068 47.619 0.00 0.00 34.52 3.32
199 200 2.417243 GCAAAATGGCGGTTGAAGCTAT 60.417 45.455 0.00 0.00 37.40 2.97
200 201 3.848726 CAAAATGGCGGTTGAAGCTATT 58.151 40.909 0.00 0.00 45.51 1.73
201 202 3.782889 AAATGGCGGTTGAAGCTATTC 57.217 42.857 0.60 0.00 43.37 1.75
202 203 1.299541 ATGGCGGTTGAAGCTATTCG 58.700 50.000 0.00 0.00 38.34 3.34
203 204 0.742990 TGGCGGTTGAAGCTATTCGG 60.743 55.000 0.00 0.00 38.34 4.30
204 205 0.461339 GGCGGTTGAAGCTATTCGGA 60.461 55.000 0.00 0.00 38.34 4.55
205 206 0.931005 GCGGTTGAAGCTATTCGGAG 59.069 55.000 0.00 0.00 38.34 4.63
206 207 1.571919 CGGTTGAAGCTATTCGGAGG 58.428 55.000 0.00 0.00 38.34 4.30
207 208 1.806623 CGGTTGAAGCTATTCGGAGGG 60.807 57.143 0.00 0.00 38.34 4.30
208 209 1.475213 GGTTGAAGCTATTCGGAGGGG 60.475 57.143 0.00 0.00 38.34 4.79
209 210 1.485066 GTTGAAGCTATTCGGAGGGGA 59.515 52.381 0.00 0.00 38.34 4.81
210 211 2.103153 TGAAGCTATTCGGAGGGGAT 57.897 50.000 0.00 0.00 38.34 3.85
211 212 1.971357 TGAAGCTATTCGGAGGGGATC 59.029 52.381 0.00 0.00 38.34 3.36
212 213 1.971357 GAAGCTATTCGGAGGGGATCA 59.029 52.381 0.00 0.00 0.00 2.92
213 214 2.334006 AGCTATTCGGAGGGGATCAT 57.666 50.000 0.00 0.00 0.00 2.45
214 215 2.183679 AGCTATTCGGAGGGGATCATC 58.816 52.381 0.00 0.00 0.00 2.92
215 216 1.134965 GCTATTCGGAGGGGATCATCG 60.135 57.143 0.00 0.00 0.00 3.84
216 217 0.895530 TATTCGGAGGGGATCATCGC 59.104 55.000 0.00 0.00 0.00 4.58
224 225 1.270907 GGGGATCATCGCCTCTATGT 58.729 55.000 13.61 0.00 45.11 2.29
225 226 1.066573 GGGGATCATCGCCTCTATGTG 60.067 57.143 13.61 0.00 45.11 3.21
226 227 1.066573 GGGATCATCGCCTCTATGTGG 60.067 57.143 0.00 0.00 0.00 4.17
227 228 1.620819 GGATCATCGCCTCTATGTGGT 59.379 52.381 0.00 0.00 0.00 4.16
228 229 2.611473 GGATCATCGCCTCTATGTGGTG 60.611 54.545 0.00 0.00 36.49 4.17
229 230 0.104855 TCATCGCCTCTATGTGGTGC 59.895 55.000 0.00 0.00 35.25 5.01
230 231 0.105593 CATCGCCTCTATGTGGTGCT 59.894 55.000 0.00 0.00 35.25 4.40
231 232 1.341209 CATCGCCTCTATGTGGTGCTA 59.659 52.381 0.00 0.00 35.25 3.49
232 233 1.704641 TCGCCTCTATGTGGTGCTAT 58.295 50.000 0.00 0.00 35.25 2.97
233 234 2.039418 TCGCCTCTATGTGGTGCTATT 58.961 47.619 0.00 0.00 35.25 1.73
234 235 2.138320 CGCCTCTATGTGGTGCTATTG 58.862 52.381 0.00 0.00 0.00 1.90
235 236 2.483714 CGCCTCTATGTGGTGCTATTGT 60.484 50.000 0.00 0.00 0.00 2.71
236 237 3.545703 GCCTCTATGTGGTGCTATTGTT 58.454 45.455 0.00 0.00 0.00 2.83
237 238 3.561725 GCCTCTATGTGGTGCTATTGTTC 59.438 47.826 0.00 0.00 0.00 3.18
238 239 3.804325 CCTCTATGTGGTGCTATTGTTCG 59.196 47.826 0.00 0.00 0.00 3.95
239 240 3.194861 TCTATGTGGTGCTATTGTTCGC 58.805 45.455 0.00 0.00 0.00 4.70
240 241 0.726827 ATGTGGTGCTATTGTTCGCG 59.273 50.000 0.00 0.00 0.00 5.87
241 242 0.319986 TGTGGTGCTATTGTTCGCGA 60.320 50.000 3.71 3.71 0.00 5.87
242 243 0.370273 GTGGTGCTATTGTTCGCGAG 59.630 55.000 9.59 0.00 0.00 5.03
243 244 0.245266 TGGTGCTATTGTTCGCGAGA 59.755 50.000 9.59 0.00 39.20 4.04
244 245 1.134818 TGGTGCTATTGTTCGCGAGAT 60.135 47.619 9.59 7.89 41.60 2.75
245 246 1.523095 GGTGCTATTGTTCGCGAGATC 59.477 52.381 9.59 4.97 41.60 2.75
246 247 2.193447 GTGCTATTGTTCGCGAGATCA 58.807 47.619 9.59 7.77 41.60 2.92
250 251 3.597550 TTGTTCGCGAGATCAACCA 57.402 47.368 9.59 0.00 42.90 3.67
251 252 1.872388 TTGTTCGCGAGATCAACCAA 58.128 45.000 9.59 2.50 42.90 3.67
252 253 1.872388 TGTTCGCGAGATCAACCAAA 58.128 45.000 9.59 0.00 41.60 3.28
253 254 1.798223 TGTTCGCGAGATCAACCAAAG 59.202 47.619 9.59 0.00 41.60 2.77
254 255 0.796312 TTCGCGAGATCAACCAAAGC 59.204 50.000 9.59 0.00 41.60 3.51
255 256 0.037326 TCGCGAGATCAACCAAAGCT 60.037 50.000 3.71 0.00 33.31 3.74
256 257 0.371645 CGCGAGATCAACCAAAGCTC 59.628 55.000 0.00 0.00 0.00 4.09
257 258 1.731720 GCGAGATCAACCAAAGCTCT 58.268 50.000 0.00 0.00 0.00 4.09
258 259 2.735444 CGCGAGATCAACCAAAGCTCTA 60.735 50.000 0.00 0.00 0.00 2.43
259 260 2.863137 GCGAGATCAACCAAAGCTCTAG 59.137 50.000 0.00 0.00 0.00 2.43
260 261 3.677424 GCGAGATCAACCAAAGCTCTAGT 60.677 47.826 0.00 0.00 0.00 2.57
261 262 4.440250 GCGAGATCAACCAAAGCTCTAGTA 60.440 45.833 0.00 0.00 0.00 1.82
262 263 5.277825 CGAGATCAACCAAAGCTCTAGTAG 58.722 45.833 0.00 0.00 0.00 2.57
263 264 5.163602 CGAGATCAACCAAAGCTCTAGTAGT 60.164 44.000 0.00 0.00 0.00 2.73
264 265 6.613153 AGATCAACCAAAGCTCTAGTAGTT 57.387 37.500 0.00 0.00 0.00 2.24
265 266 7.010339 AGATCAACCAAAGCTCTAGTAGTTT 57.990 36.000 0.00 0.00 0.00 2.66
266 267 7.454225 AGATCAACCAAAGCTCTAGTAGTTTT 58.546 34.615 0.00 0.00 39.00 2.43
267 268 7.939588 AGATCAACCAAAGCTCTAGTAGTTTTT 59.060 33.333 0.00 0.00 36.59 1.94
268 269 7.492352 TCAACCAAAGCTCTAGTAGTTTTTC 57.508 36.000 0.00 0.00 36.59 2.29
269 270 6.485648 TCAACCAAAGCTCTAGTAGTTTTTCC 59.514 38.462 0.00 0.00 36.59 3.13
270 271 6.189036 ACCAAAGCTCTAGTAGTTTTTCCT 57.811 37.500 0.00 0.00 36.59 3.36
271 272 6.231951 ACCAAAGCTCTAGTAGTTTTTCCTC 58.768 40.000 0.00 0.00 36.59 3.71
272 273 6.043358 ACCAAAGCTCTAGTAGTTTTTCCTCT 59.957 38.462 0.00 0.00 36.59 3.69
273 274 6.937465 CCAAAGCTCTAGTAGTTTTTCCTCTT 59.063 38.462 0.00 0.00 36.59 2.85
274 275 7.095017 CCAAAGCTCTAGTAGTTTTTCCTCTTG 60.095 40.741 0.00 0.00 36.59 3.02
275 276 6.673839 AGCTCTAGTAGTTTTTCCTCTTGT 57.326 37.500 0.00 0.00 0.00 3.16
276 277 7.068686 AGCTCTAGTAGTTTTTCCTCTTGTT 57.931 36.000 0.00 0.00 0.00 2.83
277 278 7.510407 AGCTCTAGTAGTTTTTCCTCTTGTTT 58.490 34.615 0.00 0.00 0.00 2.83
278 279 8.648693 AGCTCTAGTAGTTTTTCCTCTTGTTTA 58.351 33.333 0.00 0.00 0.00 2.01
279 280 9.269453 GCTCTAGTAGTTTTTCCTCTTGTTTAA 57.731 33.333 0.00 0.00 0.00 1.52
303 304 8.842358 AATTTTACATGAGTTTAGAACCTCGA 57.158 30.769 0.00 0.00 0.00 4.04
304 305 8.842358 ATTTTACATGAGTTTAGAACCTCGAA 57.158 30.769 0.00 0.00 0.00 3.71
305 306 8.842358 TTTTACATGAGTTTAGAACCTCGAAT 57.158 30.769 0.00 0.00 0.00 3.34
306 307 7.827819 TTACATGAGTTTAGAACCTCGAATG 57.172 36.000 0.00 0.00 0.00 2.67
307 308 5.794894 ACATGAGTTTAGAACCTCGAATGT 58.205 37.500 0.00 0.00 0.00 2.71
308 309 5.869888 ACATGAGTTTAGAACCTCGAATGTC 59.130 40.000 0.00 0.00 0.00 3.06
309 310 4.817517 TGAGTTTAGAACCTCGAATGTCC 58.182 43.478 0.00 0.00 0.00 4.02
310 311 4.282449 TGAGTTTAGAACCTCGAATGTCCA 59.718 41.667 0.00 0.00 0.00 4.02
311 312 5.046591 TGAGTTTAGAACCTCGAATGTCCAT 60.047 40.000 0.00 0.00 0.00 3.41
312 313 5.178797 AGTTTAGAACCTCGAATGTCCATG 58.821 41.667 0.00 0.00 0.00 3.66
313 314 2.029838 AGAACCTCGAATGTCCATGC 57.970 50.000 0.00 0.00 0.00 4.06
314 315 1.017387 GAACCTCGAATGTCCATGCC 58.983 55.000 0.00 0.00 0.00 4.40
315 316 0.394352 AACCTCGAATGTCCATGCCC 60.394 55.000 0.00 0.00 0.00 5.36
316 317 1.224315 CCTCGAATGTCCATGCCCA 59.776 57.895 0.00 0.00 0.00 5.36
317 318 1.097547 CCTCGAATGTCCATGCCCAC 61.098 60.000 0.00 0.00 0.00 4.61
318 319 0.392863 CTCGAATGTCCATGCCCACA 60.393 55.000 0.00 0.00 0.00 4.17
319 320 0.037447 TCGAATGTCCATGCCCACAA 59.963 50.000 0.00 0.00 0.00 3.33
320 321 0.887247 CGAATGTCCATGCCCACAAA 59.113 50.000 0.00 0.00 0.00 2.83
321 322 1.402720 CGAATGTCCATGCCCACAAAC 60.403 52.381 0.00 0.00 0.00 2.93
322 323 1.895131 GAATGTCCATGCCCACAAACT 59.105 47.619 0.00 0.00 0.00 2.66
323 324 2.897271 ATGTCCATGCCCACAAACTA 57.103 45.000 0.00 0.00 0.00 2.24
324 325 2.198827 TGTCCATGCCCACAAACTAG 57.801 50.000 0.00 0.00 0.00 2.57
325 326 0.811281 GTCCATGCCCACAAACTAGC 59.189 55.000 0.00 0.00 0.00 3.42
326 327 0.403655 TCCATGCCCACAAACTAGCA 59.596 50.000 0.00 0.00 40.00 3.49
327 328 1.202989 TCCATGCCCACAAACTAGCAA 60.203 47.619 0.00 0.00 38.99 3.91
328 329 1.617850 CCATGCCCACAAACTAGCAAA 59.382 47.619 0.00 0.00 38.99 3.68
329 330 2.353011 CCATGCCCACAAACTAGCAAAG 60.353 50.000 0.00 0.00 38.99 2.77
330 331 0.673437 TGCCCACAAACTAGCAAAGC 59.327 50.000 0.00 0.00 30.97 3.51
331 332 0.673437 GCCCACAAACTAGCAAAGCA 59.327 50.000 0.00 0.00 0.00 3.91
332 333 1.273327 GCCCACAAACTAGCAAAGCAT 59.727 47.619 0.00 0.00 0.00 3.79
333 334 2.927871 GCCCACAAACTAGCAAAGCATG 60.928 50.000 0.00 0.00 0.00 4.06
347 348 2.706339 AGCATGCTTTGAGTCTAGGG 57.294 50.000 16.30 0.00 0.00 3.53
348 349 2.191400 AGCATGCTTTGAGTCTAGGGA 58.809 47.619 16.30 0.00 0.00 4.20
349 350 2.776536 AGCATGCTTTGAGTCTAGGGAT 59.223 45.455 16.30 0.00 0.00 3.85
350 351 3.969976 AGCATGCTTTGAGTCTAGGGATA 59.030 43.478 16.30 0.00 0.00 2.59
351 352 4.040217 AGCATGCTTTGAGTCTAGGGATAG 59.960 45.833 16.30 0.00 0.00 2.08
352 353 4.802248 GCATGCTTTGAGTCTAGGGATAGG 60.802 50.000 11.37 0.00 0.00 2.57
353 354 3.995636 TGCTTTGAGTCTAGGGATAGGT 58.004 45.455 0.00 0.00 0.00 3.08
354 355 3.961408 TGCTTTGAGTCTAGGGATAGGTC 59.039 47.826 0.00 0.00 0.00 3.85
355 356 3.004944 GCTTTGAGTCTAGGGATAGGTCG 59.995 52.174 0.00 0.00 0.00 4.79
356 357 3.947612 TTGAGTCTAGGGATAGGTCGT 57.052 47.619 0.00 0.00 0.00 4.34
357 358 3.488778 TGAGTCTAGGGATAGGTCGTC 57.511 52.381 0.00 0.00 0.00 4.20
358 359 2.775960 TGAGTCTAGGGATAGGTCGTCA 59.224 50.000 0.00 0.00 0.00 4.35
359 360 3.394940 TGAGTCTAGGGATAGGTCGTCAT 59.605 47.826 0.00 0.00 0.00 3.06
360 361 3.754323 GAGTCTAGGGATAGGTCGTCATG 59.246 52.174 0.00 0.00 0.00 3.07
361 362 3.138653 AGTCTAGGGATAGGTCGTCATGT 59.861 47.826 0.00 0.00 0.00 3.21
362 363 3.890147 GTCTAGGGATAGGTCGTCATGTT 59.110 47.826 0.00 0.00 0.00 2.71
363 364 4.341520 GTCTAGGGATAGGTCGTCATGTTT 59.658 45.833 0.00 0.00 0.00 2.83
364 365 3.543680 AGGGATAGGTCGTCATGTTTG 57.456 47.619 0.00 0.00 0.00 2.93
365 366 2.170607 AGGGATAGGTCGTCATGTTTGG 59.829 50.000 0.00 0.00 0.00 3.28
366 367 2.093128 GGGATAGGTCGTCATGTTTGGT 60.093 50.000 0.00 0.00 0.00 3.67
367 368 3.606687 GGATAGGTCGTCATGTTTGGTT 58.393 45.455 0.00 0.00 0.00 3.67
368 369 4.007659 GGATAGGTCGTCATGTTTGGTTT 58.992 43.478 0.00 0.00 0.00 3.27
369 370 4.142687 GGATAGGTCGTCATGTTTGGTTTG 60.143 45.833 0.00 0.00 0.00 2.93
370 371 1.953686 AGGTCGTCATGTTTGGTTTGG 59.046 47.619 0.00 0.00 0.00 3.28
371 372 1.679153 GGTCGTCATGTTTGGTTTGGT 59.321 47.619 0.00 0.00 0.00 3.67
372 373 2.879646 GGTCGTCATGTTTGGTTTGGTA 59.120 45.455 0.00 0.00 0.00 3.25
373 374 3.504520 GGTCGTCATGTTTGGTTTGGTAT 59.495 43.478 0.00 0.00 0.00 2.73
374 375 4.022676 GGTCGTCATGTTTGGTTTGGTATT 60.023 41.667 0.00 0.00 0.00 1.89
375 376 5.151389 GTCGTCATGTTTGGTTTGGTATTC 58.849 41.667 0.00 0.00 0.00 1.75
376 377 4.216687 TCGTCATGTTTGGTTTGGTATTCC 59.783 41.667 0.00 0.00 0.00 3.01
377 378 4.217550 CGTCATGTTTGGTTTGGTATTCCT 59.782 41.667 0.00 0.00 34.23 3.36
378 379 5.469479 GTCATGTTTGGTTTGGTATTCCTG 58.531 41.667 0.00 0.00 34.23 3.86
379 380 4.526262 TCATGTTTGGTTTGGTATTCCTGG 59.474 41.667 0.00 0.00 34.23 4.45
380 381 4.186077 TGTTTGGTTTGGTATTCCTGGA 57.814 40.909 0.00 0.00 34.23 3.86
381 382 4.148838 TGTTTGGTTTGGTATTCCTGGAG 58.851 43.478 0.00 0.00 34.23 3.86
382 383 4.141135 TGTTTGGTTTGGTATTCCTGGAGA 60.141 41.667 0.00 0.00 34.23 3.71
383 384 4.946160 TTGGTTTGGTATTCCTGGAGAT 57.054 40.909 0.00 0.00 34.23 2.75
384 385 4.503714 TGGTTTGGTATTCCTGGAGATC 57.496 45.455 0.00 0.00 34.23 2.75
385 386 4.111577 TGGTTTGGTATTCCTGGAGATCT 58.888 43.478 0.00 0.00 34.23 2.75
386 387 4.164221 TGGTTTGGTATTCCTGGAGATCTC 59.836 45.833 14.75 14.75 34.23 2.75
387 388 4.410555 GGTTTGGTATTCCTGGAGATCTCT 59.589 45.833 21.81 3.98 34.23 3.10
388 389 5.104318 GGTTTGGTATTCCTGGAGATCTCTT 60.104 44.000 21.81 3.91 34.23 2.85
389 390 5.620738 TTGGTATTCCTGGAGATCTCTTG 57.379 43.478 21.81 14.09 34.23 3.02
390 391 4.624913 TGGTATTCCTGGAGATCTCTTGT 58.375 43.478 21.81 5.90 34.23 3.16
391 392 5.032846 TGGTATTCCTGGAGATCTCTTGTT 58.967 41.667 21.81 5.82 34.23 2.83
392 393 5.129485 TGGTATTCCTGGAGATCTCTTGTTC 59.871 44.000 21.81 5.87 34.23 3.18
393 394 5.365314 GGTATTCCTGGAGATCTCTTGTTCT 59.635 44.000 21.81 6.63 0.00 3.01
394 395 5.612725 ATTCCTGGAGATCTCTTGTTCTC 57.387 43.478 21.81 4.44 37.97 2.87
398 399 3.817709 GGAGATCTCTTGTTCTCCCTG 57.182 52.381 21.81 0.00 46.22 4.45
399 400 3.103742 GGAGATCTCTTGTTCTCCCTGT 58.896 50.000 21.81 0.00 46.22 4.00
400 401 4.282496 GGAGATCTCTTGTTCTCCCTGTA 58.718 47.826 21.81 0.00 46.22 2.74
401 402 4.712337 GGAGATCTCTTGTTCTCCCTGTAA 59.288 45.833 21.81 0.00 46.22 2.41
402 403 5.187967 GGAGATCTCTTGTTCTCCCTGTAAA 59.812 44.000 21.81 0.00 46.22 2.01
403 404 6.126911 GGAGATCTCTTGTTCTCCCTGTAAAT 60.127 42.308 21.81 0.00 46.22 1.40
404 405 7.264294 AGATCTCTTGTTCTCCCTGTAAATT 57.736 36.000 0.00 0.00 0.00 1.82
405 406 7.108847 AGATCTCTTGTTCTCCCTGTAAATTG 58.891 38.462 0.00 0.00 0.00 2.32
406 407 6.187727 TCTCTTGTTCTCCCTGTAAATTGT 57.812 37.500 0.00 0.00 0.00 2.71
407 408 5.997746 TCTCTTGTTCTCCCTGTAAATTGTG 59.002 40.000 0.00 0.00 0.00 3.33
408 409 5.690865 TCTTGTTCTCCCTGTAAATTGTGT 58.309 37.500 0.00 0.00 0.00 3.72
409 410 5.530915 TCTTGTTCTCCCTGTAAATTGTGTG 59.469 40.000 0.00 0.00 0.00 3.82
410 411 5.042463 TGTTCTCCCTGTAAATTGTGTGA 57.958 39.130 0.00 0.00 0.00 3.58
411 412 4.819630 TGTTCTCCCTGTAAATTGTGTGAC 59.180 41.667 0.00 0.00 0.00 3.67
412 413 3.659786 TCTCCCTGTAAATTGTGTGACG 58.340 45.455 0.00 0.00 0.00 4.35
413 414 2.742053 CTCCCTGTAAATTGTGTGACGG 59.258 50.000 0.00 0.00 0.00 4.79
414 415 2.105134 TCCCTGTAAATTGTGTGACGGT 59.895 45.455 0.00 0.00 0.00 4.83
415 416 2.882137 CCCTGTAAATTGTGTGACGGTT 59.118 45.455 0.00 0.00 0.00 4.44
416 417 3.058501 CCCTGTAAATTGTGTGACGGTTC 60.059 47.826 0.00 0.00 0.00 3.62
417 418 3.562141 CCTGTAAATTGTGTGACGGTTCA 59.438 43.478 0.00 0.00 0.00 3.18
418 419 4.035792 CCTGTAAATTGTGTGACGGTTCAA 59.964 41.667 0.00 0.00 31.90 2.69
419 420 5.278266 CCTGTAAATTGTGTGACGGTTCAAT 60.278 40.000 0.00 0.00 31.90 2.57
420 421 6.072948 CCTGTAAATTGTGTGACGGTTCAATA 60.073 38.462 0.00 0.00 31.90 1.90
421 422 7.260558 TGTAAATTGTGTGACGGTTCAATAA 57.739 32.000 0.00 0.00 31.90 1.40
422 423 7.704271 TGTAAATTGTGTGACGGTTCAATAAA 58.296 30.769 0.00 0.00 31.90 1.40
423 424 7.858382 TGTAAATTGTGTGACGGTTCAATAAAG 59.142 33.333 0.00 0.00 31.90 1.85
424 425 3.889196 TGTGTGACGGTTCAATAAAGC 57.111 42.857 0.00 0.00 31.90 3.51
425 426 3.472652 TGTGTGACGGTTCAATAAAGCT 58.527 40.909 0.00 0.00 31.90 3.74
426 427 3.880490 TGTGTGACGGTTCAATAAAGCTT 59.120 39.130 0.00 0.00 31.90 3.74
427 428 4.024387 TGTGTGACGGTTCAATAAAGCTTC 60.024 41.667 0.00 0.00 35.00 3.86
428 429 4.024387 GTGTGACGGTTCAATAAAGCTTCA 60.024 41.667 0.00 0.00 40.18 3.02
429 430 4.759693 TGTGACGGTTCAATAAAGCTTCAT 59.240 37.500 0.00 0.00 43.02 2.57
430 431 5.088739 GTGACGGTTCAATAAAGCTTCATG 58.911 41.667 0.00 0.00 43.02 3.07
431 432 5.000591 TGACGGTTCAATAAAGCTTCATGA 58.999 37.500 0.00 1.83 38.33 3.07
432 433 5.122239 TGACGGTTCAATAAAGCTTCATGAG 59.878 40.000 0.00 0.00 38.33 2.90
433 434 5.003804 ACGGTTCAATAAAGCTTCATGAGT 58.996 37.500 0.00 0.00 33.06 3.41
434 435 5.473504 ACGGTTCAATAAAGCTTCATGAGTT 59.526 36.000 0.00 0.00 33.06 3.01
435 436 6.016276 ACGGTTCAATAAAGCTTCATGAGTTT 60.016 34.615 0.00 0.51 33.06 2.66
436 437 6.306356 CGGTTCAATAAAGCTTCATGAGTTTG 59.694 38.462 0.00 0.00 33.06 2.93
437 438 6.089954 GGTTCAATAAAGCTTCATGAGTTTGC 59.910 38.462 0.00 0.00 32.48 3.68
438 439 5.713025 TCAATAAAGCTTCATGAGTTTGCC 58.287 37.500 0.00 0.00 0.00 4.52
439 440 5.243507 TCAATAAAGCTTCATGAGTTTGCCA 59.756 36.000 0.00 0.00 0.00 4.92
440 441 5.726980 ATAAAGCTTCATGAGTTTGCCAA 57.273 34.783 0.00 0.00 0.00 4.52
441 442 4.405116 AAAGCTTCATGAGTTTGCCAAA 57.595 36.364 0.00 0.00 0.00 3.28
442 443 4.405116 AAGCTTCATGAGTTTGCCAAAA 57.595 36.364 0.00 0.00 0.00 2.44
476 477 4.416505 AAAGAGCAAGAATCTTGAAGCG 57.583 40.909 25.54 0.00 37.10 4.68
503 504 5.452078 TTCAATGGCTCAAAAATCGACTT 57.548 34.783 0.00 0.00 0.00 3.01
505 506 6.182039 TCAATGGCTCAAAAATCGACTTAG 57.818 37.500 0.00 0.00 0.00 2.18
573 578 1.094785 AAACATATCACCGCACCAGC 58.905 50.000 0.00 0.00 37.42 4.85
727 744 2.502080 GTGCGTCGACCTCACTCG 60.502 66.667 21.46 6.66 34.83 4.18
788 806 4.394712 AAGCGCCGAACCAGGAGG 62.395 66.667 2.29 0.00 42.21 4.30
799 817 3.133003 CGAACCAGGAGGATAACATCACT 59.867 47.826 0.00 0.00 38.69 3.41
801 819 3.724478 ACCAGGAGGATAACATCACTCA 58.276 45.455 0.00 0.00 38.69 3.41
805 823 3.452627 AGGAGGATAACATCACTCACACC 59.547 47.826 0.00 0.00 31.99 4.16
807 825 3.452627 GAGGATAACATCACTCACACCCT 59.547 47.826 0.00 0.00 31.24 4.34
808 826 3.198635 AGGATAACATCACTCACACCCTG 59.801 47.826 0.00 0.00 0.00 4.45
824 842 2.593148 TGCGTGCCATTGACCGTT 60.593 55.556 0.00 0.00 0.00 4.44
844 862 6.544564 ACCGTTCTTAATTTGGTTCTTCTTCA 59.455 34.615 0.00 0.00 0.00 3.02
859 877 5.200483 TCTTCTTCAATCAACCAACCAACT 58.800 37.500 0.00 0.00 0.00 3.16
863 881 5.241506 TCTTCAATCAACCAACCAACTCATC 59.758 40.000 0.00 0.00 0.00 2.92
865 883 4.278170 TCAATCAACCAACCAACTCATCAC 59.722 41.667 0.00 0.00 0.00 3.06
866 884 3.576078 TCAACCAACCAACTCATCACT 57.424 42.857 0.00 0.00 0.00 3.41
867 885 3.476552 TCAACCAACCAACTCATCACTC 58.523 45.455 0.00 0.00 0.00 3.51
868 886 3.136443 TCAACCAACCAACTCATCACTCT 59.864 43.478 0.00 0.00 0.00 3.24
869 887 3.409026 ACCAACCAACTCATCACTCTC 57.591 47.619 0.00 0.00 0.00 3.20
870 888 2.705658 ACCAACCAACTCATCACTCTCA 59.294 45.455 0.00 0.00 0.00 3.27
884 902 9.327628 CTCATCACTCTCATATGTTCTTTCATT 57.672 33.333 1.90 0.00 0.00 2.57
899 917 8.358895 TGTTCTTTCATTGTTGCATTCTTCATA 58.641 29.630 0.00 0.00 0.00 2.15
931 953 5.825151 GCAATCTCTCTAATTACCTTGGCTT 59.175 40.000 0.00 0.00 0.00 4.35
970 996 1.671328 GCTTTCCCCTAATCTCGCAAC 59.329 52.381 0.00 0.00 0.00 4.17
974 1000 3.426787 TCCCCTAATCTCGCAACAAAA 57.573 42.857 0.00 0.00 0.00 2.44
985 1011 4.269844 TCTCGCAACAAAATTTTGGCTTTC 59.730 37.500 29.37 12.94 42.34 2.62
1034 1079 5.823209 AACACCTTTTGTGGTTAGTGTAC 57.177 39.130 0.00 0.00 44.50 2.90
1061 1128 8.149973 ACTTTACGATGTGAGTAATGTTTGTT 57.850 30.769 0.00 0.00 38.46 2.83
1093 1160 3.324556 TCACATGTCAAGTGATGTCCAGA 59.675 43.478 6.80 0.00 40.80 3.86
1126 1193 0.753111 GCCCCCAGATACAAGCCAAG 60.753 60.000 0.00 0.00 0.00 3.61
1224 1296 1.069090 AACGTCGCCTTCTTGCTCA 59.931 52.632 0.00 0.00 0.00 4.26
1230 1302 1.379576 GCCTTCTTGCTCATGGCCT 60.380 57.895 3.32 0.00 40.92 5.19
1231 1303 0.969409 GCCTTCTTGCTCATGGCCTT 60.969 55.000 3.32 0.00 40.92 4.35
1394 1472 4.183686 GGCTACGACGCCGCTACA 62.184 66.667 8.56 0.00 40.79 2.74
1395 1473 2.025727 GCTACGACGCCGCTACAT 59.974 61.111 0.00 0.00 39.95 2.29
1402 1480 1.269444 GACGCCGCTACATCATCGTC 61.269 60.000 0.00 0.00 39.25 4.20
1854 1935 3.282745 GACGCGTGCTTCCTCCTCA 62.283 63.158 20.70 0.00 0.00 3.86
2060 2147 2.362736 GTGGAGACGGATTTTTACCCC 58.637 52.381 0.00 0.00 0.00 4.95
2069 2156 3.423749 GGATTTTTACCCCGACCAAGAA 58.576 45.455 0.00 0.00 0.00 2.52
2086 2173 3.901797 AACCGCTGCTCCCCGAAAG 62.902 63.158 0.00 0.00 0.00 2.62
2129 2228 2.932905 GGCGACGCAACGAAGAAA 59.067 55.556 23.09 0.00 35.09 2.52
2134 2233 2.848002 GCGACGCAACGAAGAAAAAGAA 60.848 45.455 16.42 0.00 35.09 2.52
2136 2235 3.289076 GACGCAACGAAGAAAAAGAAGG 58.711 45.455 0.00 0.00 0.00 3.46
2375 2474 2.125350 GCCTTCCTCAGCACGGAG 60.125 66.667 0.00 0.00 34.62 4.63
2480 2579 0.040499 ACGAGCTCCTCTCCCTTCTT 59.960 55.000 8.47 0.00 38.62 2.52
2695 2794 2.138656 CTGTTGCTGTCTTGCTGGGC 62.139 60.000 0.00 0.00 0.00 5.36
2784 2883 1.533994 GGGCTTTTGTGGGCCTTCT 60.534 57.895 4.53 0.00 46.80 2.85
2815 2914 1.380380 GAAGGGGCATGAAGGTGGG 60.380 63.158 0.00 0.00 0.00 4.61
2822 2921 0.618458 GCATGAAGGTGGGTAGGACA 59.382 55.000 0.00 0.00 0.00 4.02
2910 3009 9.476202 CTTAATTTAAAGGGTCCAACTCAAAAG 57.524 33.333 0.00 0.00 0.00 2.27
2944 3048 9.180678 GAGTGGTAGAACAAATTTTGTACATTG 57.819 33.333 14.81 0.38 44.59 2.82
2953 3057 6.966066 ACAAATTTTGTACATTGCAAAACTGC 59.034 30.769 12.98 0.00 44.99 4.40
3055 3161 1.398390 GCACTAAATGAGCGGGAACAG 59.602 52.381 0.00 0.00 0.00 3.16
3115 3221 8.713971 TGCATCTTAGAATCTAAAAGGGTGATA 58.286 33.333 4.13 0.00 0.00 2.15
3300 3437 1.802960 GCGAAGGCCATGATGACATAG 59.197 52.381 5.01 0.00 35.09 2.23
3356 3499 8.604890 GCAGAAATAGTGGTCTACTTTATTGAC 58.395 37.037 0.00 0.00 40.89 3.18
3446 3590 9.829507 ACCAAAATGATCAACATACAAAGAAAA 57.170 25.926 0.00 0.00 38.38 2.29
3579 3723 6.795399 TCCAACAAAGAAGACATTGACTTTC 58.205 36.000 2.99 0.00 31.52 2.62
3588 3732 5.310409 AGACATTGACTTTCCCTTCTCAA 57.690 39.130 0.00 0.00 0.00 3.02
3623 3767 3.060602 CCCTTCAACTTCGAACTGTCTC 58.939 50.000 0.00 0.00 0.00 3.36
3639 3783 5.207354 ACTGTCTCATATCATGGACTCTGT 58.793 41.667 0.00 0.00 34.02 3.41
3682 3826 0.680921 TAGCCACAGAAAGCATGGGC 60.681 55.000 0.00 0.00 41.65 5.36
3685 3829 0.896940 CCACAGAAAGCATGGGCACT 60.897 55.000 0.00 0.00 44.61 4.40
3691 3835 3.066342 CAGAAAGCATGGGCACTGATAAG 59.934 47.826 0.00 0.00 44.61 1.73
3715 3859 7.237255 AGAAATCAGAAGGAAAACCAGAGAAT 58.763 34.615 0.00 0.00 0.00 2.40
3732 3876 7.504911 ACCAGAGAATTATTCTAATGCTTGCAT 59.495 33.333 7.52 1.81 40.87 3.96
3819 3963 8.018677 ACTACTGATCAAATGTAAAGAACACG 57.981 34.615 0.00 0.00 42.09 4.49
3850 3995 7.385752 AGCATTGTTATTGGTCTGAAACAATTG 59.614 33.333 12.37 3.24 45.49 2.32
3863 4008 8.131100 GTCTGAAACAATTGATCAAACTTGAGA 58.869 33.333 22.57 14.18 41.08 3.27
3865 4010 8.806177 TGAAACAATTGATCAAACTTGAGATG 57.194 30.769 22.57 10.69 41.08 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.545841 CCTACAGCCCCAAAACTTCC 58.454 55.000 0.00 0.00 0.00 3.46
1 2 0.888619 GCCTACAGCCCCAAAACTTC 59.111 55.000 0.00 0.00 34.35 3.01
2 3 0.893727 CGCCTACAGCCCCAAAACTT 60.894 55.000 0.00 0.00 38.78 2.66
3 4 1.303317 CGCCTACAGCCCCAAAACT 60.303 57.895 0.00 0.00 38.78 2.66
4 5 2.989881 GCGCCTACAGCCCCAAAAC 61.990 63.158 0.00 0.00 38.78 2.43
5 6 1.843462 TAGCGCCTACAGCCCCAAAA 61.843 55.000 2.29 0.00 38.78 2.44
6 7 1.632018 ATAGCGCCTACAGCCCCAAA 61.632 55.000 2.29 0.00 38.78 3.28
7 8 1.632018 AATAGCGCCTACAGCCCCAA 61.632 55.000 2.29 0.00 38.78 4.12
8 9 1.632018 AAATAGCGCCTACAGCCCCA 61.632 55.000 2.29 0.00 38.78 4.96
9 10 1.148498 AAATAGCGCCTACAGCCCC 59.852 57.895 2.29 0.00 38.78 5.80
10 11 0.463833 ACAAATAGCGCCTACAGCCC 60.464 55.000 2.29 0.00 38.78 5.19
11 12 0.938008 GACAAATAGCGCCTACAGCC 59.062 55.000 2.29 0.00 38.78 4.85
12 13 0.577269 CGACAAATAGCGCCTACAGC 59.423 55.000 2.29 0.00 38.52 4.40
13 14 1.588404 CACGACAAATAGCGCCTACAG 59.412 52.381 2.29 0.00 0.00 2.74
14 15 1.202817 TCACGACAAATAGCGCCTACA 59.797 47.619 2.29 0.00 0.00 2.74
15 16 1.587034 GTCACGACAAATAGCGCCTAC 59.413 52.381 2.29 0.00 0.00 3.18
16 17 1.796253 CGTCACGACAAATAGCGCCTA 60.796 52.381 2.29 0.00 0.00 3.93
17 18 1.076533 CGTCACGACAAATAGCGCCT 61.077 55.000 2.29 0.00 0.00 5.52
18 19 1.343821 CGTCACGACAAATAGCGCC 59.656 57.895 2.29 0.00 0.00 6.53
19 20 1.343821 CCGTCACGACAAATAGCGC 59.656 57.895 0.00 0.00 0.00 5.92
20 21 1.058695 GAACCGTCACGACAAATAGCG 59.941 52.381 0.00 0.00 0.00 4.26
21 22 2.092211 CAGAACCGTCACGACAAATAGC 59.908 50.000 0.00 0.00 0.00 2.97
22 23 2.666508 CCAGAACCGTCACGACAAATAG 59.333 50.000 0.00 0.00 0.00 1.73
23 24 2.036217 ACCAGAACCGTCACGACAAATA 59.964 45.455 0.00 0.00 0.00 1.40
24 25 1.202604 ACCAGAACCGTCACGACAAAT 60.203 47.619 0.00 0.00 0.00 2.32
25 26 0.176219 ACCAGAACCGTCACGACAAA 59.824 50.000 0.00 0.00 0.00 2.83
26 27 0.528901 CACCAGAACCGTCACGACAA 60.529 55.000 0.00 0.00 0.00 3.18
27 28 1.066752 CACCAGAACCGTCACGACA 59.933 57.895 0.00 0.00 0.00 4.35
28 29 0.938168 GACACCAGAACCGTCACGAC 60.938 60.000 0.00 0.00 0.00 4.34
29 30 1.105167 AGACACCAGAACCGTCACGA 61.105 55.000 0.00 0.00 31.92 4.35
30 31 0.249322 AAGACACCAGAACCGTCACG 60.249 55.000 0.00 0.00 31.92 4.35
31 32 1.068741 AGAAGACACCAGAACCGTCAC 59.931 52.381 0.00 0.00 31.92 3.67
32 33 1.068588 CAGAAGACACCAGAACCGTCA 59.931 52.381 0.00 0.00 31.92 4.35
33 34 1.605712 CCAGAAGACACCAGAACCGTC 60.606 57.143 0.00 0.00 0.00 4.79
34 35 0.393077 CCAGAAGACACCAGAACCGT 59.607 55.000 0.00 0.00 0.00 4.83
35 36 0.320771 CCCAGAAGACACCAGAACCG 60.321 60.000 0.00 0.00 0.00 4.44
36 37 0.036875 CCCCAGAAGACACCAGAACC 59.963 60.000 0.00 0.00 0.00 3.62
37 38 0.036875 CCCCCAGAAGACACCAGAAC 59.963 60.000 0.00 0.00 0.00 3.01
38 39 2.463441 CCCCCAGAAGACACCAGAA 58.537 57.895 0.00 0.00 0.00 3.02
39 40 4.232905 CCCCCAGAAGACACCAGA 57.767 61.111 0.00 0.00 0.00 3.86
53 54 3.590466 AACCACAGCTGATGCCCCC 62.590 63.158 23.35 0.00 40.80 5.40
54 55 1.187567 AAAACCACAGCTGATGCCCC 61.188 55.000 23.35 0.00 40.80 5.80
55 56 0.244721 GAAAACCACAGCTGATGCCC 59.755 55.000 23.35 0.00 40.80 5.36
56 57 0.961019 TGAAAACCACAGCTGATGCC 59.039 50.000 23.35 3.15 40.80 4.40
57 58 1.068055 CCTGAAAACCACAGCTGATGC 60.068 52.381 23.35 2.78 40.05 3.91
58 59 2.507484 TCCTGAAAACCACAGCTGATG 58.493 47.619 23.35 14.55 34.47 3.07
59 60 2.957402 TCCTGAAAACCACAGCTGAT 57.043 45.000 23.35 1.19 34.47 2.90
60 61 2.727123 TTCCTGAAAACCACAGCTGA 57.273 45.000 23.35 0.00 34.47 4.26
61 62 5.183713 TCAATATTCCTGAAAACCACAGCTG 59.816 40.000 13.48 13.48 34.47 4.24
62 63 5.324409 TCAATATTCCTGAAAACCACAGCT 58.676 37.500 0.00 0.00 34.47 4.24
63 64 5.393461 CCTCAATATTCCTGAAAACCACAGC 60.393 44.000 0.00 0.00 34.47 4.40
64 65 5.945784 TCCTCAATATTCCTGAAAACCACAG 59.054 40.000 0.00 0.00 35.43 3.66
65 66 5.886609 TCCTCAATATTCCTGAAAACCACA 58.113 37.500 0.00 0.00 0.00 4.17
66 67 6.039829 GGATCCTCAATATTCCTGAAAACCAC 59.960 42.308 3.84 0.00 0.00 4.16
67 68 6.068853 AGGATCCTCAATATTCCTGAAAACCA 60.069 38.462 9.02 0.00 37.22 3.67
68 69 6.368805 AGGATCCTCAATATTCCTGAAAACC 58.631 40.000 9.02 0.00 37.22 3.27
75 76 4.596643 CACCTCAGGATCCTCAATATTCCT 59.403 45.833 12.69 0.00 39.18 3.36
76 77 4.805609 GCACCTCAGGATCCTCAATATTCC 60.806 50.000 12.69 0.00 0.00 3.01
77 78 4.041444 AGCACCTCAGGATCCTCAATATTC 59.959 45.833 12.69 0.00 0.00 1.75
78 79 3.979347 AGCACCTCAGGATCCTCAATATT 59.021 43.478 12.69 0.00 0.00 1.28
79 80 3.327172 CAGCACCTCAGGATCCTCAATAT 59.673 47.826 12.69 0.00 0.00 1.28
80 81 2.702478 CAGCACCTCAGGATCCTCAATA 59.298 50.000 12.69 0.00 0.00 1.90
81 82 1.489649 CAGCACCTCAGGATCCTCAAT 59.510 52.381 12.69 0.00 0.00 2.57
82 83 0.907486 CAGCACCTCAGGATCCTCAA 59.093 55.000 12.69 1.79 0.00 3.02
83 84 0.979709 CCAGCACCTCAGGATCCTCA 60.980 60.000 12.69 0.00 0.00 3.86
84 85 0.689080 TCCAGCACCTCAGGATCCTC 60.689 60.000 12.69 0.00 0.00 3.71
85 86 0.252881 TTCCAGCACCTCAGGATCCT 60.253 55.000 9.02 9.02 29.85 3.24
86 87 0.179936 CTTCCAGCACCTCAGGATCC 59.820 60.000 2.48 2.48 29.85 3.36
87 88 0.463474 GCTTCCAGCACCTCAGGATC 60.463 60.000 0.00 0.00 41.89 3.36
88 89 1.606531 GCTTCCAGCACCTCAGGAT 59.393 57.895 0.00 0.00 41.89 3.24
89 90 2.947532 CGCTTCCAGCACCTCAGGA 61.948 63.158 0.00 0.00 42.58 3.86
90 91 2.435586 CGCTTCCAGCACCTCAGG 60.436 66.667 0.00 0.00 42.58 3.86
91 92 1.302033 AACGCTTCCAGCACCTCAG 60.302 57.895 0.00 0.00 42.58 3.35
92 93 1.597854 CAACGCTTCCAGCACCTCA 60.598 57.895 0.00 0.00 42.58 3.86
93 94 2.328099 CCAACGCTTCCAGCACCTC 61.328 63.158 0.00 0.00 42.58 3.85
94 95 2.281761 CCAACGCTTCCAGCACCT 60.282 61.111 0.00 0.00 42.58 4.00
95 96 2.594592 ACCAACGCTTCCAGCACC 60.595 61.111 0.00 0.00 42.58 5.01
96 97 1.237285 ATCACCAACGCTTCCAGCAC 61.237 55.000 0.00 0.00 42.58 4.40
97 98 0.537143 AATCACCAACGCTTCCAGCA 60.537 50.000 0.00 0.00 42.58 4.41
98 99 1.398390 CTAATCACCAACGCTTCCAGC 59.602 52.381 0.00 0.00 38.02 4.85
99 100 2.932614 CTCTAATCACCAACGCTTCCAG 59.067 50.000 0.00 0.00 0.00 3.86
100 101 2.565391 TCTCTAATCACCAACGCTTCCA 59.435 45.455 0.00 0.00 0.00 3.53
101 102 3.190874 CTCTCTAATCACCAACGCTTCC 58.809 50.000 0.00 0.00 0.00 3.46
102 103 3.190874 CCTCTCTAATCACCAACGCTTC 58.809 50.000 0.00 0.00 0.00 3.86
103 104 2.678190 GCCTCTCTAATCACCAACGCTT 60.678 50.000 0.00 0.00 0.00 4.68
104 105 1.134670 GCCTCTCTAATCACCAACGCT 60.135 52.381 0.00 0.00 0.00 5.07
105 106 1.134670 AGCCTCTCTAATCACCAACGC 60.135 52.381 0.00 0.00 0.00 4.84
106 107 2.428890 AGAGCCTCTCTAATCACCAACG 59.571 50.000 0.00 0.00 39.28 4.10
107 108 5.538433 AGATAGAGCCTCTCTAATCACCAAC 59.462 44.000 0.00 0.00 44.76 3.77
108 109 5.710646 AGATAGAGCCTCTCTAATCACCAA 58.289 41.667 0.00 0.00 44.76 3.67
109 110 5.074377 AGAGATAGAGCCTCTCTAATCACCA 59.926 44.000 0.00 0.00 45.91 4.17
110 111 5.570320 AGAGATAGAGCCTCTCTAATCACC 58.430 45.833 0.00 0.00 45.91 4.02
111 112 6.316390 GCTAGAGATAGAGCCTCTCTAATCAC 59.684 46.154 0.00 0.00 46.46 3.06
112 113 6.012945 TGCTAGAGATAGAGCCTCTCTAATCA 60.013 42.308 0.00 8.70 46.46 2.57
113 114 6.414732 TGCTAGAGATAGAGCCTCTCTAATC 58.585 44.000 0.00 0.00 46.46 1.75
114 115 6.387192 TGCTAGAGATAGAGCCTCTCTAAT 57.613 41.667 0.00 0.00 46.46 1.73
115 116 5.834281 TGCTAGAGATAGAGCCTCTCTAA 57.166 43.478 0.00 0.00 46.46 2.10
116 117 5.834281 TTGCTAGAGATAGAGCCTCTCTA 57.166 43.478 0.00 6.08 45.91 2.43
118 119 5.476599 TCATTTGCTAGAGATAGAGCCTCTC 59.523 44.000 0.00 0.00 41.00 3.20
119 120 5.243730 GTCATTTGCTAGAGATAGAGCCTCT 59.756 44.000 0.00 0.00 42.97 3.69
120 121 5.469479 GTCATTTGCTAGAGATAGAGCCTC 58.531 45.833 0.00 0.00 0.00 4.70
121 122 4.283212 GGTCATTTGCTAGAGATAGAGCCT 59.717 45.833 0.00 0.00 0.00 4.58
122 123 4.283212 AGGTCATTTGCTAGAGATAGAGCC 59.717 45.833 0.00 0.00 0.00 4.70
123 124 5.467035 AGGTCATTTGCTAGAGATAGAGC 57.533 43.478 0.00 0.00 0.00 4.09
152 153 9.662947 CAATCAGATGCCACTAATATCTTATGA 57.337 33.333 0.00 0.00 0.00 2.15
153 154 8.396390 GCAATCAGATGCCACTAATATCTTATG 58.604 37.037 0.00 0.00 40.49 1.90
154 155 8.105197 TGCAATCAGATGCCACTAATATCTTAT 58.895 33.333 0.00 0.00 45.83 1.73
155 156 7.452562 TGCAATCAGATGCCACTAATATCTTA 58.547 34.615 0.00 0.00 45.83 2.10
156 157 6.301486 TGCAATCAGATGCCACTAATATCTT 58.699 36.000 0.00 0.00 45.83 2.40
157 158 5.872963 TGCAATCAGATGCCACTAATATCT 58.127 37.500 0.00 0.00 45.83 1.98
158 159 6.564709 TTGCAATCAGATGCCACTAATATC 57.435 37.500 0.00 0.00 45.83 1.63
159 160 6.964807 TTTGCAATCAGATGCCACTAATAT 57.035 33.333 0.00 0.00 45.83 1.28
160 161 6.772360 TTTTGCAATCAGATGCCACTAATA 57.228 33.333 0.00 0.00 45.83 0.98
161 162 5.664294 TTTTGCAATCAGATGCCACTAAT 57.336 34.783 0.00 0.00 45.83 1.73
162 163 5.412640 CATTTTGCAATCAGATGCCACTAA 58.587 37.500 0.00 0.00 45.83 2.24
163 164 4.142116 CCATTTTGCAATCAGATGCCACTA 60.142 41.667 0.00 0.00 45.83 2.74
164 165 3.369052 CCATTTTGCAATCAGATGCCACT 60.369 43.478 0.00 0.00 45.83 4.00
165 166 2.933906 CCATTTTGCAATCAGATGCCAC 59.066 45.455 0.00 0.00 45.83 5.01
166 167 2.678479 GCCATTTTGCAATCAGATGCCA 60.678 45.455 0.00 0.00 45.83 4.92
167 168 1.937899 GCCATTTTGCAATCAGATGCC 59.062 47.619 0.00 0.00 45.83 4.40
168 169 1.591158 CGCCATTTTGCAATCAGATGC 59.409 47.619 0.00 0.00 46.58 3.91
169 170 2.198406 CCGCCATTTTGCAATCAGATG 58.802 47.619 0.00 3.00 0.00 2.90
170 171 1.826720 ACCGCCATTTTGCAATCAGAT 59.173 42.857 0.00 0.00 0.00 2.90
171 172 1.255882 ACCGCCATTTTGCAATCAGA 58.744 45.000 0.00 0.00 0.00 3.27
172 173 1.727880 CAACCGCCATTTTGCAATCAG 59.272 47.619 0.00 0.00 0.00 2.90
173 174 1.342496 TCAACCGCCATTTTGCAATCA 59.658 42.857 0.00 0.00 0.00 2.57
174 175 2.077413 TCAACCGCCATTTTGCAATC 57.923 45.000 0.00 0.00 0.00 2.67
175 176 2.415776 CTTCAACCGCCATTTTGCAAT 58.584 42.857 0.00 0.00 0.00 3.56
176 177 1.863267 CTTCAACCGCCATTTTGCAA 58.137 45.000 0.00 0.00 0.00 4.08
177 178 0.599728 GCTTCAACCGCCATTTTGCA 60.600 50.000 0.00 0.00 0.00 4.08
178 179 0.319813 AGCTTCAACCGCCATTTTGC 60.320 50.000 0.00 0.00 0.00 3.68
179 180 3.508744 ATAGCTTCAACCGCCATTTTG 57.491 42.857 0.00 0.00 0.00 2.44
180 181 3.427503 CGAATAGCTTCAACCGCCATTTT 60.428 43.478 0.00 0.00 0.00 1.82
181 182 2.097466 CGAATAGCTTCAACCGCCATTT 59.903 45.455 0.00 0.00 0.00 2.32
182 183 1.670811 CGAATAGCTTCAACCGCCATT 59.329 47.619 0.00 0.00 0.00 3.16
183 184 1.299541 CGAATAGCTTCAACCGCCAT 58.700 50.000 0.00 0.00 0.00 4.40
184 185 0.742990 CCGAATAGCTTCAACCGCCA 60.743 55.000 0.00 0.00 0.00 5.69
185 186 0.461339 TCCGAATAGCTTCAACCGCC 60.461 55.000 0.00 0.00 0.00 6.13
186 187 0.931005 CTCCGAATAGCTTCAACCGC 59.069 55.000 0.00 0.00 0.00 5.68
187 188 1.571919 CCTCCGAATAGCTTCAACCG 58.428 55.000 0.00 0.00 0.00 4.44
188 189 1.475213 CCCCTCCGAATAGCTTCAACC 60.475 57.143 0.00 0.00 0.00 3.77
189 190 1.485066 TCCCCTCCGAATAGCTTCAAC 59.515 52.381 0.00 0.00 0.00 3.18
190 191 1.874129 TCCCCTCCGAATAGCTTCAA 58.126 50.000 0.00 0.00 0.00 2.69
191 192 1.971357 GATCCCCTCCGAATAGCTTCA 59.029 52.381 0.00 0.00 0.00 3.02
192 193 1.971357 TGATCCCCTCCGAATAGCTTC 59.029 52.381 0.00 0.00 0.00 3.86
193 194 2.103153 TGATCCCCTCCGAATAGCTT 57.897 50.000 0.00 0.00 0.00 3.74
194 195 2.183679 GATGATCCCCTCCGAATAGCT 58.816 52.381 0.00 0.00 0.00 3.32
195 196 1.134965 CGATGATCCCCTCCGAATAGC 60.135 57.143 0.00 0.00 0.00 2.97
196 197 1.134965 GCGATGATCCCCTCCGAATAG 60.135 57.143 0.00 0.00 0.00 1.73
197 198 0.895530 GCGATGATCCCCTCCGAATA 59.104 55.000 0.00 0.00 0.00 1.75
198 199 1.674057 GCGATGATCCCCTCCGAAT 59.326 57.895 0.00 0.00 0.00 3.34
199 200 2.507854 GGCGATGATCCCCTCCGAA 61.508 63.158 0.00 0.00 0.00 4.30
200 201 2.917751 GGCGATGATCCCCTCCGA 60.918 66.667 0.00 0.00 0.00 4.55
201 202 2.919856 AGGCGATGATCCCCTCCG 60.920 66.667 0.00 0.00 0.00 4.63
202 203 0.251832 TAGAGGCGATGATCCCCTCC 60.252 60.000 19.74 5.31 44.95 4.30
203 204 1.480137 CATAGAGGCGATGATCCCCTC 59.520 57.143 16.55 16.55 44.34 4.30
204 205 1.203237 ACATAGAGGCGATGATCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
205 206 1.066573 CACATAGAGGCGATGATCCCC 60.067 57.143 4.43 0.00 0.00 4.81
206 207 1.066573 CCACATAGAGGCGATGATCCC 60.067 57.143 4.43 0.00 0.00 3.85
207 208 1.620819 ACCACATAGAGGCGATGATCC 59.379 52.381 4.43 0.00 0.00 3.36
208 209 2.681706 CACCACATAGAGGCGATGATC 58.318 52.381 4.43 0.00 0.00 2.92
209 210 1.270518 GCACCACATAGAGGCGATGAT 60.271 52.381 4.43 0.00 0.00 2.45
210 211 0.104855 GCACCACATAGAGGCGATGA 59.895 55.000 4.43 0.00 0.00 2.92
211 212 0.105593 AGCACCACATAGAGGCGATG 59.894 55.000 0.00 0.00 0.00 3.84
212 213 1.704641 TAGCACCACATAGAGGCGAT 58.295 50.000 0.00 0.00 0.00 4.58
213 214 1.704641 ATAGCACCACATAGAGGCGA 58.295 50.000 0.00 0.00 0.00 5.54
214 215 2.138320 CAATAGCACCACATAGAGGCG 58.862 52.381 0.00 0.00 0.00 5.52
215 216 3.199880 ACAATAGCACCACATAGAGGC 57.800 47.619 0.00 0.00 0.00 4.70
216 217 3.804325 CGAACAATAGCACCACATAGAGG 59.196 47.826 0.00 0.00 0.00 3.69
217 218 3.246226 GCGAACAATAGCACCACATAGAG 59.754 47.826 0.00 0.00 0.00 2.43
218 219 3.194861 GCGAACAATAGCACCACATAGA 58.805 45.455 0.00 0.00 0.00 1.98
219 220 2.033747 CGCGAACAATAGCACCACATAG 60.034 50.000 0.00 0.00 0.00 2.23
220 221 1.930503 CGCGAACAATAGCACCACATA 59.069 47.619 0.00 0.00 0.00 2.29
221 222 0.726827 CGCGAACAATAGCACCACAT 59.273 50.000 0.00 0.00 0.00 3.21
222 223 0.319986 TCGCGAACAATAGCACCACA 60.320 50.000 6.20 0.00 0.00 4.17
223 224 0.370273 CTCGCGAACAATAGCACCAC 59.630 55.000 11.33 0.00 0.00 4.16
224 225 0.245266 TCTCGCGAACAATAGCACCA 59.755 50.000 11.33 0.00 0.00 4.17
225 226 1.523095 GATCTCGCGAACAATAGCACC 59.477 52.381 11.33 0.00 0.00 5.01
226 227 2.193447 TGATCTCGCGAACAATAGCAC 58.807 47.619 11.33 0.00 0.00 4.40
227 228 2.577449 TGATCTCGCGAACAATAGCA 57.423 45.000 11.33 0.00 0.00 3.49
228 229 2.033662 GGTTGATCTCGCGAACAATAGC 60.034 50.000 20.01 9.15 34.94 2.97
229 230 3.186909 TGGTTGATCTCGCGAACAATAG 58.813 45.455 20.01 5.55 34.94 1.73
230 231 3.239587 TGGTTGATCTCGCGAACAATA 57.760 42.857 20.01 12.76 34.94 1.90
231 232 2.093306 TGGTTGATCTCGCGAACAAT 57.907 45.000 20.01 11.00 34.94 2.71
232 233 1.872388 TTGGTTGATCTCGCGAACAA 58.128 45.000 11.33 13.99 30.61 2.83
233 234 1.798223 CTTTGGTTGATCTCGCGAACA 59.202 47.619 11.33 8.26 0.00 3.18
234 235 1.464189 GCTTTGGTTGATCTCGCGAAC 60.464 52.381 11.33 4.54 0.00 3.95
235 236 0.796312 GCTTTGGTTGATCTCGCGAA 59.204 50.000 11.33 1.32 0.00 4.70
236 237 0.037326 AGCTTTGGTTGATCTCGCGA 60.037 50.000 9.26 9.26 0.00 5.87
237 238 0.371645 GAGCTTTGGTTGATCTCGCG 59.628 55.000 0.00 0.00 0.00 5.87
238 239 1.731720 AGAGCTTTGGTTGATCTCGC 58.268 50.000 0.00 0.00 0.00 5.03
239 240 4.116747 ACTAGAGCTTTGGTTGATCTCG 57.883 45.455 0.00 0.00 0.00 4.04
240 241 6.215495 ACTACTAGAGCTTTGGTTGATCTC 57.785 41.667 8.92 0.00 0.00 2.75
241 242 6.613153 AACTACTAGAGCTTTGGTTGATCT 57.387 37.500 8.92 0.00 0.00 2.75
242 243 7.674471 AAAACTACTAGAGCTTTGGTTGATC 57.326 36.000 8.92 0.00 0.00 2.92
243 244 7.175119 GGAAAAACTACTAGAGCTTTGGTTGAT 59.825 37.037 8.92 0.00 0.00 2.57
244 245 6.485648 GGAAAAACTACTAGAGCTTTGGTTGA 59.514 38.462 8.92 0.00 0.00 3.18
245 246 6.486993 AGGAAAAACTACTAGAGCTTTGGTTG 59.513 38.462 0.00 0.00 0.00 3.77
246 247 6.602278 AGGAAAAACTACTAGAGCTTTGGTT 58.398 36.000 0.00 0.00 0.00 3.67
247 248 6.043358 AGAGGAAAAACTACTAGAGCTTTGGT 59.957 38.462 0.00 0.00 0.00 3.67
248 249 6.468543 AGAGGAAAAACTACTAGAGCTTTGG 58.531 40.000 0.00 0.00 0.00 3.28
249 250 7.442666 ACAAGAGGAAAAACTACTAGAGCTTTG 59.557 37.037 0.00 0.00 0.00 2.77
250 251 7.510407 ACAAGAGGAAAAACTACTAGAGCTTT 58.490 34.615 0.00 0.00 0.00 3.51
251 252 7.068686 ACAAGAGGAAAAACTACTAGAGCTT 57.931 36.000 0.00 0.00 0.00 3.74
252 253 6.673839 ACAAGAGGAAAAACTACTAGAGCT 57.326 37.500 0.00 0.00 0.00 4.09
253 254 7.731882 AAACAAGAGGAAAAACTACTAGAGC 57.268 36.000 0.00 0.00 0.00 4.09
277 278 9.932207 TCGAGGTTCTAAACTCATGTAAAATTA 57.068 29.630 8.41 0.00 33.36 1.40
278 279 8.842358 TCGAGGTTCTAAACTCATGTAAAATT 57.158 30.769 8.41 0.00 33.36 1.82
279 280 8.842358 TTCGAGGTTCTAAACTCATGTAAAAT 57.158 30.769 8.41 0.00 33.36 1.82
280 281 8.717821 CATTCGAGGTTCTAAACTCATGTAAAA 58.282 33.333 8.41 0.00 33.36 1.52
281 282 7.876068 ACATTCGAGGTTCTAAACTCATGTAAA 59.124 33.333 10.42 0.00 32.13 2.01
282 283 7.383687 ACATTCGAGGTTCTAAACTCATGTAA 58.616 34.615 10.42 0.30 32.13 2.41
283 284 6.931838 ACATTCGAGGTTCTAAACTCATGTA 58.068 36.000 10.42 0.00 32.13 2.29
284 285 5.794894 ACATTCGAGGTTCTAAACTCATGT 58.205 37.500 8.41 7.92 33.36 3.21
285 286 5.292101 GGACATTCGAGGTTCTAAACTCATG 59.708 44.000 8.41 7.37 33.36 3.07
286 287 5.046591 TGGACATTCGAGGTTCTAAACTCAT 60.047 40.000 8.41 0.00 33.36 2.90
287 288 4.282449 TGGACATTCGAGGTTCTAAACTCA 59.718 41.667 8.41 0.00 33.36 3.41
288 289 4.817517 TGGACATTCGAGGTTCTAAACTC 58.182 43.478 0.00 0.00 0.00 3.01
289 290 4.884668 TGGACATTCGAGGTTCTAAACT 57.115 40.909 0.11 0.00 0.00 2.66
290 291 4.201822 GCATGGACATTCGAGGTTCTAAAC 60.202 45.833 0.00 0.00 0.00 2.01
291 292 3.938963 GCATGGACATTCGAGGTTCTAAA 59.061 43.478 0.00 0.00 0.00 1.85
292 293 3.531538 GCATGGACATTCGAGGTTCTAA 58.468 45.455 0.00 0.00 0.00 2.10
293 294 2.158957 GGCATGGACATTCGAGGTTCTA 60.159 50.000 0.00 0.00 0.00 2.10
294 295 1.407437 GGCATGGACATTCGAGGTTCT 60.407 52.381 0.00 0.00 0.00 3.01
295 296 1.017387 GGCATGGACATTCGAGGTTC 58.983 55.000 0.00 0.00 0.00 3.62
296 297 0.394352 GGGCATGGACATTCGAGGTT 60.394 55.000 0.00 0.00 0.00 3.50
297 298 1.224592 GGGCATGGACATTCGAGGT 59.775 57.895 0.00 0.00 0.00 3.85
298 299 1.097547 GTGGGCATGGACATTCGAGG 61.098 60.000 0.00 0.00 0.00 4.63
299 300 0.392863 TGTGGGCATGGACATTCGAG 60.393 55.000 0.00 0.00 0.00 4.04
300 301 0.037447 TTGTGGGCATGGACATTCGA 59.963 50.000 0.00 0.00 0.00 3.71
301 302 0.887247 TTTGTGGGCATGGACATTCG 59.113 50.000 0.00 0.00 0.00 3.34
302 303 1.895131 AGTTTGTGGGCATGGACATTC 59.105 47.619 0.00 0.00 0.00 2.67
303 304 2.014010 AGTTTGTGGGCATGGACATT 57.986 45.000 0.00 0.00 0.00 2.71
304 305 2.726821 CTAGTTTGTGGGCATGGACAT 58.273 47.619 0.00 0.00 0.00 3.06
305 306 1.886222 GCTAGTTTGTGGGCATGGACA 60.886 52.381 0.00 0.00 0.00 4.02
306 307 0.811281 GCTAGTTTGTGGGCATGGAC 59.189 55.000 0.00 0.00 0.00 4.02
307 308 0.403655 TGCTAGTTTGTGGGCATGGA 59.596 50.000 0.00 0.00 0.00 3.41
308 309 1.255882 TTGCTAGTTTGTGGGCATGG 58.744 50.000 0.00 0.00 34.59 3.66
309 310 2.927871 GCTTTGCTAGTTTGTGGGCATG 60.928 50.000 0.00 0.00 34.59 4.06
310 311 1.273327 GCTTTGCTAGTTTGTGGGCAT 59.727 47.619 0.00 0.00 34.59 4.40
311 312 0.673437 GCTTTGCTAGTTTGTGGGCA 59.327 50.000 0.00 0.00 0.00 5.36
312 313 0.673437 TGCTTTGCTAGTTTGTGGGC 59.327 50.000 0.00 0.00 0.00 5.36
313 314 2.950433 CATGCTTTGCTAGTTTGTGGG 58.050 47.619 0.00 0.00 0.00 4.61
326 327 3.009473 TCCCTAGACTCAAAGCATGCTTT 59.991 43.478 34.56 34.56 45.98 3.51
327 328 2.573462 TCCCTAGACTCAAAGCATGCTT 59.427 45.455 27.21 27.21 37.98 3.91
328 329 2.191400 TCCCTAGACTCAAAGCATGCT 58.809 47.619 16.30 16.30 0.00 3.79
329 330 2.698855 TCCCTAGACTCAAAGCATGC 57.301 50.000 10.51 10.51 0.00 4.06
330 331 4.346418 ACCTATCCCTAGACTCAAAGCATG 59.654 45.833 0.00 0.00 0.00 4.06
331 332 4.561752 ACCTATCCCTAGACTCAAAGCAT 58.438 43.478 0.00 0.00 0.00 3.79
332 333 3.961408 GACCTATCCCTAGACTCAAAGCA 59.039 47.826 0.00 0.00 0.00 3.91
333 334 3.004944 CGACCTATCCCTAGACTCAAAGC 59.995 52.174 0.00 0.00 0.00 3.51
334 335 4.208746 ACGACCTATCCCTAGACTCAAAG 58.791 47.826 0.00 0.00 0.00 2.77
335 336 4.205587 GACGACCTATCCCTAGACTCAAA 58.794 47.826 0.00 0.00 0.00 2.69
336 337 3.201487 TGACGACCTATCCCTAGACTCAA 59.799 47.826 0.00 0.00 0.00 3.02
337 338 2.775960 TGACGACCTATCCCTAGACTCA 59.224 50.000 0.00 0.00 0.00 3.41
338 339 3.488778 TGACGACCTATCCCTAGACTC 57.511 52.381 0.00 0.00 0.00 3.36
339 340 3.138653 ACATGACGACCTATCCCTAGACT 59.861 47.826 0.00 0.00 0.00 3.24
340 341 3.488363 ACATGACGACCTATCCCTAGAC 58.512 50.000 0.00 0.00 0.00 2.59
341 342 3.878237 ACATGACGACCTATCCCTAGA 57.122 47.619 0.00 0.00 0.00 2.43
342 343 4.501571 CCAAACATGACGACCTATCCCTAG 60.502 50.000 0.00 0.00 0.00 3.02
343 344 3.386726 CCAAACATGACGACCTATCCCTA 59.613 47.826 0.00 0.00 0.00 3.53
344 345 2.170607 CCAAACATGACGACCTATCCCT 59.829 50.000 0.00 0.00 0.00 4.20
345 346 2.093128 ACCAAACATGACGACCTATCCC 60.093 50.000 0.00 0.00 0.00 3.85
346 347 3.261981 ACCAAACATGACGACCTATCC 57.738 47.619 0.00 0.00 0.00 2.59
347 348 4.142687 CCAAACCAAACATGACGACCTATC 60.143 45.833 0.00 0.00 0.00 2.08
348 349 3.756434 CCAAACCAAACATGACGACCTAT 59.244 43.478 0.00 0.00 0.00 2.57
349 350 3.142951 CCAAACCAAACATGACGACCTA 58.857 45.455 0.00 0.00 0.00 3.08
350 351 1.953686 CCAAACCAAACATGACGACCT 59.046 47.619 0.00 0.00 0.00 3.85
351 352 1.679153 ACCAAACCAAACATGACGACC 59.321 47.619 0.00 0.00 0.00 4.79
352 353 4.759516 ATACCAAACCAAACATGACGAC 57.240 40.909 0.00 0.00 0.00 4.34
353 354 4.216687 GGAATACCAAACCAAACATGACGA 59.783 41.667 0.00 0.00 35.97 4.20
354 355 4.217550 AGGAATACCAAACCAAACATGACG 59.782 41.667 0.00 0.00 38.94 4.35
355 356 5.469479 CAGGAATACCAAACCAAACATGAC 58.531 41.667 0.00 0.00 38.94 3.06
356 357 4.526262 CCAGGAATACCAAACCAAACATGA 59.474 41.667 0.00 0.00 38.94 3.07
357 358 4.526262 TCCAGGAATACCAAACCAAACATG 59.474 41.667 0.00 0.00 38.94 3.21
358 359 4.746466 TCCAGGAATACCAAACCAAACAT 58.254 39.130 0.00 0.00 38.94 2.71
359 360 4.141135 TCTCCAGGAATACCAAACCAAACA 60.141 41.667 0.00 0.00 38.94 2.83
360 361 4.403734 TCTCCAGGAATACCAAACCAAAC 58.596 43.478 0.00 0.00 38.94 2.93
361 362 4.733077 TCTCCAGGAATACCAAACCAAA 57.267 40.909 0.00 0.00 38.94 3.28
362 363 4.540099 AGATCTCCAGGAATACCAAACCAA 59.460 41.667 0.00 0.00 38.94 3.67
363 364 4.111577 AGATCTCCAGGAATACCAAACCA 58.888 43.478 0.00 0.00 38.94 3.67
364 365 4.410555 AGAGATCTCCAGGAATACCAAACC 59.589 45.833 19.30 0.00 38.94 3.27
365 366 5.622346 AGAGATCTCCAGGAATACCAAAC 57.378 43.478 19.30 0.00 38.94 2.93
366 367 5.488919 ACAAGAGATCTCCAGGAATACCAAA 59.511 40.000 19.30 0.00 38.94 3.28
367 368 5.032846 ACAAGAGATCTCCAGGAATACCAA 58.967 41.667 19.30 0.00 38.94 3.67
368 369 4.624913 ACAAGAGATCTCCAGGAATACCA 58.375 43.478 19.30 0.00 38.94 3.25
369 370 5.365314 AGAACAAGAGATCTCCAGGAATACC 59.635 44.000 19.30 0.77 0.00 2.73
370 371 6.478512 AGAACAAGAGATCTCCAGGAATAC 57.521 41.667 19.30 4.24 0.00 1.89
371 372 6.723298 GAGAACAAGAGATCTCCAGGAATA 57.277 41.667 19.30 0.00 37.62 1.75
372 373 5.612725 GAGAACAAGAGATCTCCAGGAAT 57.387 43.478 19.30 1.99 37.62 3.01
379 380 5.923733 TTACAGGGAGAACAAGAGATCTC 57.076 43.478 15.29 15.29 41.49 2.75
380 381 6.882768 ATTTACAGGGAGAACAAGAGATCT 57.117 37.500 0.00 0.00 0.00 2.75
381 382 6.881602 ACAATTTACAGGGAGAACAAGAGATC 59.118 38.462 0.00 0.00 0.00 2.75
382 383 6.656693 CACAATTTACAGGGAGAACAAGAGAT 59.343 38.462 0.00 0.00 0.00 2.75
383 384 5.997746 CACAATTTACAGGGAGAACAAGAGA 59.002 40.000 0.00 0.00 0.00 3.10
384 385 5.765182 ACACAATTTACAGGGAGAACAAGAG 59.235 40.000 0.00 0.00 0.00 2.85
385 386 5.530915 CACACAATTTACAGGGAGAACAAGA 59.469 40.000 0.00 0.00 0.00 3.02
386 387 5.530915 TCACACAATTTACAGGGAGAACAAG 59.469 40.000 0.00 0.00 0.00 3.16
387 388 5.298276 GTCACACAATTTACAGGGAGAACAA 59.702 40.000 0.00 0.00 0.00 2.83
388 389 4.819630 GTCACACAATTTACAGGGAGAACA 59.180 41.667 0.00 0.00 0.00 3.18
389 390 4.084013 CGTCACACAATTTACAGGGAGAAC 60.084 45.833 0.00 0.00 0.00 3.01
390 391 4.062293 CGTCACACAATTTACAGGGAGAA 58.938 43.478 0.00 0.00 0.00 2.87
391 392 3.556213 CCGTCACACAATTTACAGGGAGA 60.556 47.826 0.00 0.00 0.00 3.71
392 393 2.742053 CCGTCACACAATTTACAGGGAG 59.258 50.000 0.00 0.00 0.00 4.30
393 394 2.105134 ACCGTCACACAATTTACAGGGA 59.895 45.455 0.00 0.00 0.00 4.20
394 395 2.500229 ACCGTCACACAATTTACAGGG 58.500 47.619 0.00 0.00 0.00 4.45
395 396 3.562141 TGAACCGTCACACAATTTACAGG 59.438 43.478 0.00 0.00 0.00 4.00
396 397 4.804608 TGAACCGTCACACAATTTACAG 57.195 40.909 0.00 0.00 0.00 2.74
397 398 5.759506 ATTGAACCGTCACACAATTTACA 57.240 34.783 0.00 0.00 31.90 2.41
398 399 7.149031 GCTTTATTGAACCGTCACACAATTTAC 60.149 37.037 0.00 0.00 35.19 2.01
399 400 6.858993 GCTTTATTGAACCGTCACACAATTTA 59.141 34.615 0.00 0.00 35.19 1.40
400 401 5.689961 GCTTTATTGAACCGTCACACAATTT 59.310 36.000 0.00 0.00 35.19 1.82
401 402 5.009610 AGCTTTATTGAACCGTCACACAATT 59.990 36.000 0.00 0.00 35.19 2.32
402 403 4.518970 AGCTTTATTGAACCGTCACACAAT 59.481 37.500 0.00 0.00 36.94 2.71
403 404 3.880490 AGCTTTATTGAACCGTCACACAA 59.120 39.130 0.00 0.00 31.90 3.33
404 405 3.472652 AGCTTTATTGAACCGTCACACA 58.527 40.909 0.00 0.00 31.90 3.72
405 406 4.024387 TGAAGCTTTATTGAACCGTCACAC 60.024 41.667 0.00 0.00 31.90 3.82
406 407 4.130857 TGAAGCTTTATTGAACCGTCACA 58.869 39.130 0.00 0.00 31.90 3.58
407 408 4.742438 TGAAGCTTTATTGAACCGTCAC 57.258 40.909 0.00 0.00 31.90 3.67
408 409 5.000591 TCATGAAGCTTTATTGAACCGTCA 58.999 37.500 0.00 0.00 0.00 4.35
409 410 5.122396 ACTCATGAAGCTTTATTGAACCGTC 59.878 40.000 0.00 0.00 0.00 4.79
410 411 5.003804 ACTCATGAAGCTTTATTGAACCGT 58.996 37.500 0.00 0.00 0.00 4.83
411 412 5.551760 ACTCATGAAGCTTTATTGAACCG 57.448 39.130 0.00 0.00 0.00 4.44
412 413 6.089954 GCAAACTCATGAAGCTTTATTGAACC 59.910 38.462 0.00 0.00 0.00 3.62
413 414 6.089954 GGCAAACTCATGAAGCTTTATTGAAC 59.910 38.462 0.00 0.00 0.00 3.18
414 415 6.158598 GGCAAACTCATGAAGCTTTATTGAA 58.841 36.000 0.00 0.00 0.00 2.69
415 416 5.243507 TGGCAAACTCATGAAGCTTTATTGA 59.756 36.000 0.00 3.66 0.00 2.57
416 417 5.472148 TGGCAAACTCATGAAGCTTTATTG 58.528 37.500 0.00 0.00 0.00 1.90
417 418 5.726980 TGGCAAACTCATGAAGCTTTATT 57.273 34.783 0.00 0.00 0.00 1.40
418 419 5.726980 TTGGCAAACTCATGAAGCTTTAT 57.273 34.783 0.00 0.00 0.00 1.40
419 420 5.528043 TTTGGCAAACTCATGAAGCTTTA 57.472 34.783 8.93 0.00 0.00 1.85
420 421 4.405116 TTTGGCAAACTCATGAAGCTTT 57.595 36.364 8.93 0.00 0.00 3.51
421 422 4.405116 TTTTGGCAAACTCATGAAGCTT 57.595 36.364 13.10 0.00 0.00 3.74
422 423 4.405116 TTTTTGGCAAACTCATGAAGCT 57.595 36.364 13.10 0.00 0.00 3.74
463 464 5.964958 TTGAATTTCCGCTTCAAGATTCT 57.035 34.783 0.00 0.00 37.61 2.40
476 477 5.868801 TCGATTTTTGAGCCATTGAATTTCC 59.131 36.000 0.00 0.00 0.00 3.13
520 521 7.929245 TCAATTTAGCTATGTGTAATTCGCCTA 59.071 33.333 0.00 0.00 0.00 3.93
560 565 2.267006 CAGAGCTGGTGCGGTGAT 59.733 61.111 0.00 0.00 45.42 3.06
573 578 6.583806 GCAGTGACATGTTTTAATTTCCAGAG 59.416 38.462 0.00 0.00 0.00 3.35
727 744 4.618227 GCATCCATTGTTCCAAGTGTAACC 60.618 45.833 0.00 0.00 37.80 2.85
780 798 3.452627 GTGAGTGATGTTATCCTCCTGGT 59.547 47.826 0.00 0.00 34.23 4.00
788 806 2.939103 GCAGGGTGTGAGTGATGTTATC 59.061 50.000 0.00 0.00 0.00 1.75
789 807 2.677902 CGCAGGGTGTGAGTGATGTTAT 60.678 50.000 0.00 0.00 0.00 1.89
805 823 3.803082 CGGTCAATGGCACGCAGG 61.803 66.667 0.00 0.00 0.00 4.85
807 825 2.593148 AACGGTCAATGGCACGCA 60.593 55.556 0.00 0.00 0.00 5.24
808 826 1.852067 AAGAACGGTCAATGGCACGC 61.852 55.000 1.87 0.00 0.00 5.34
814 832 6.677913 AGAACCAAATTAAGAACGGTCAATG 58.322 36.000 1.87 0.00 0.00 2.82
824 842 9.965824 GTTGATTGAAGAAGAACCAAATTAAGA 57.034 29.630 0.00 0.00 0.00 2.10
844 862 4.473444 AGTGATGAGTTGGTTGGTTGATT 58.527 39.130 0.00 0.00 0.00 2.57
859 877 9.106070 CAATGAAAGAACATATGAGAGTGATGA 57.894 33.333 10.38 0.00 0.00 2.92
863 881 7.484007 GCAACAATGAAAGAACATATGAGAGTG 59.516 37.037 10.38 0.00 0.00 3.51
865 883 7.532571 TGCAACAATGAAAGAACATATGAGAG 58.467 34.615 10.38 0.00 0.00 3.20
866 884 7.451501 TGCAACAATGAAAGAACATATGAGA 57.548 32.000 10.38 0.00 0.00 3.27
867 885 8.697846 AATGCAACAATGAAAGAACATATGAG 57.302 30.769 10.38 0.00 0.00 2.90
868 886 8.525316 AGAATGCAACAATGAAAGAACATATGA 58.475 29.630 10.38 0.00 0.00 2.15
869 887 8.697846 AGAATGCAACAATGAAAGAACATATG 57.302 30.769 0.00 0.00 0.00 1.78
870 888 9.362539 GAAGAATGCAACAATGAAAGAACATAT 57.637 29.630 0.00 0.00 0.00 1.78
884 902 3.065233 GTGGCGATATGAAGAATGCAACA 59.935 43.478 0.00 0.00 0.00 3.33
899 917 1.032794 TAGAGAGATTGCGTGGCGAT 58.967 50.000 0.00 0.00 35.05 4.58
931 953 0.979665 CTTCACCCAGCCTGAGAAGA 59.020 55.000 13.00 0.00 38.30 2.87
970 996 9.791820 ATGAAAAAGAAGAAAGCCAAAATTTTG 57.208 25.926 21.65 21.65 37.90 2.44
974 1000 8.206189 TCTCATGAAAAAGAAGAAAGCCAAAAT 58.794 29.630 0.00 0.00 0.00 1.82
985 1011 6.372103 AGAGCAGTCATCTCATGAAAAAGAAG 59.628 38.462 0.00 0.00 41.69 2.85
1034 1079 8.922676 ACAAACATTACTCACATCGTAAAGTAG 58.077 33.333 0.00 0.00 31.10 2.57
1093 1160 0.753111 GGGGGCGCAAGAATCTGAAT 60.753 55.000 10.83 0.00 43.02 2.57
1126 1193 4.329545 TGTGGAGGCCCGTTCTGC 62.330 66.667 0.00 0.00 34.29 4.26
1185 1257 1.883084 GGCAGGCGATGAGTAACCG 60.883 63.158 0.00 0.00 0.00 4.44
1224 1296 0.326264 ACGCAGAAGAAGAAGGCCAT 59.674 50.000 5.01 0.00 0.00 4.40
1360 1438 1.227823 CCGCACCTGTCCTTGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
2060 2147 2.357517 AGCAGCGGTTCTTGGTCG 60.358 61.111 0.00 0.00 0.00 4.79
2069 2156 4.394712 CTTTCGGGGAGCAGCGGT 62.395 66.667 0.00 0.00 0.00 5.68
2129 2228 0.182775 ACCAGAACACGCCCTTCTTT 59.817 50.000 0.00 0.00 0.00 2.52
2134 2233 4.003788 CCGACCAGAACACGCCCT 62.004 66.667 0.00 0.00 0.00 5.19
2738 2837 1.736586 CCAGCCTAGCGTCTGGTAG 59.263 63.158 12.94 0.00 43.66 3.18
2759 2858 2.341176 CACAAAAGCCCAGCAGCC 59.659 61.111 0.00 0.00 0.00 4.85
2815 2914 0.322546 CCCAAAGCCCAGTGTCCTAC 60.323 60.000 0.00 0.00 0.00 3.18
2822 2921 2.860971 AGGAGCCCAAAGCCCAGT 60.861 61.111 0.00 0.00 45.47 4.00
2982 3088 2.959507 AAAGCACCAAGAAACACACC 57.040 45.000 0.00 0.00 0.00 4.16
2991 3097 6.529125 CAGTTAATGCAGAATAAAGCACCAAG 59.471 38.462 0.00 0.00 44.49 3.61
2993 3099 5.953183 CAGTTAATGCAGAATAAAGCACCA 58.047 37.500 0.00 0.00 44.49 4.17
3029 3135 1.382522 CGCTCATTTAGTGCCCACAT 58.617 50.000 0.82 0.00 33.25 3.21
3035 3141 1.398390 CTGTTCCCGCTCATTTAGTGC 59.602 52.381 0.00 0.00 34.14 4.40
3115 3221 6.269769 TGCCTAGTCCATTTTCATTCCTTTTT 59.730 34.615 0.00 0.00 0.00 1.94
3356 3499 9.425893 CTTCTTGCATGTTATTTAGTTACATCG 57.574 33.333 0.00 0.00 30.45 3.84
3374 3518 2.582052 ACATTTCCCGTTCTTCTTGCA 58.418 42.857 0.00 0.00 0.00 4.08
3446 3590 3.864789 ACCACCAGAGACAACTTCATT 57.135 42.857 0.00 0.00 0.00 2.57
3579 3723 7.017651 AGGGATTAATACTATGGTTGAGAAGGG 59.982 40.741 0.00 0.00 0.00 3.95
3588 3732 7.931948 CGAAGTTGAAGGGATTAATACTATGGT 59.068 37.037 0.00 0.00 0.00 3.55
3651 3795 7.177568 TGCTTTCTGTGGCTAATTGGTAAATTA 59.822 33.333 0.00 0.00 37.23 1.40
3682 3826 8.239998 GGTTTTCCTTCTGATTTCTTATCAGTG 58.760 37.037 12.90 8.34 40.45 3.66
3685 3829 8.163408 TCTGGTTTTCCTTCTGATTTCTTATCA 58.837 33.333 0.00 0.00 41.38 2.15
3691 3835 6.884280 TTCTCTGGTTTTCCTTCTGATTTC 57.116 37.500 0.00 0.00 41.38 2.17
3715 3859 6.865411 TGCTTTGATGCAAGCATTAGAATAA 58.135 32.000 9.16 0.00 40.29 1.40
3732 3876 4.097741 GTGTTATATGTGCCCATGCTTTGA 59.902 41.667 0.00 0.00 38.71 2.69
3819 3963 9.076596 GTTTCAGACCAATAACAATGCTTTATC 57.923 33.333 0.00 0.00 0.00 1.75
3825 3969 7.384660 TCAATTGTTTCAGACCAATAACAATGC 59.615 33.333 5.13 0.00 45.42 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.