Multiple sequence alignment - TraesCS2D01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G118700 chr2D 100.000 2633 0 0 1 2633 68468507 68465875 0.000000e+00 4863.0
1 TraesCS2D01G118700 chr2D 90.421 522 20 5 490 982 589407509 589408029 0.000000e+00 660.0
2 TraesCS2D01G118700 chr2D 89.326 534 27 14 1 508 589406945 589407474 0.000000e+00 643.0
3 TraesCS2D01G118700 chr2D 87.229 415 41 8 2154 2560 466543898 466544308 1.850000e-126 462.0
4 TraesCS2D01G118700 chr2D 86.811 417 39 11 2154 2560 397687874 397688284 4.000000e-123 451.0
5 TraesCS2D01G118700 chr2D 95.370 108 5 0 1420 1527 589408029 589408136 3.480000e-39 172.0
6 TraesCS2D01G118700 chr5D 88.423 907 64 16 1721 2611 466844287 466843406 0.000000e+00 1055.0
7 TraesCS2D01G118700 chr5D 90.141 284 17 4 1066 1349 381979448 381979720 2.490000e-95 359.0
8 TraesCS2D01G118700 chr5D 98.667 75 1 0 1347 1421 381979814 381979888 1.640000e-27 134.0
9 TraesCS2D01G118700 chr1D 87.723 896 72 14 1721 2600 370896786 370897659 0.000000e+00 1011.0
10 TraesCS2D01G118700 chr1D 87.440 207 16 9 1 205 291864079 291864277 2.040000e-56 230.0
11 TraesCS2D01G118700 chr1D 91.346 104 9 0 1702 1805 59775725 59775622 2.730000e-30 143.0
12 TraesCS2D01G118700 chr1B 93.254 504 28 6 1 502 485192960 485193459 0.000000e+00 737.0
13 TraesCS2D01G118700 chr1B 87.234 517 38 8 493 982 485193504 485194019 4.920000e-157 564.0
14 TraesCS2D01G118700 chr1B 91.901 284 22 1 1420 1703 485194019 485194301 1.900000e-106 396.0
15 TraesCS2D01G118700 chr4B 92.607 514 30 6 1 508 283103137 283102626 0.000000e+00 732.0
16 TraesCS2D01G118700 chr4B 87.985 541 36 7 490 1002 283102591 283102052 1.730000e-171 612.0
17 TraesCS2D01G118700 chr4B 87.500 176 16 1 2436 2605 302252656 302252831 5.750000e-47 198.0
18 TraesCS2D01G118700 chr2A 84.753 728 87 16 1907 2611 287219312 287220038 0.000000e+00 708.0
19 TraesCS2D01G118700 chr2A 84.774 243 11 7 707 923 578455563 578455321 1.230000e-53 220.0
20 TraesCS2D01G118700 chr2A 88.398 181 20 1 490 669 578455885 578455705 1.590000e-52 217.0
21 TraesCS2D01G118700 chr2A 81.250 96 10 6 1451 1541 573847387 573847295 1.310000e-08 71.3
22 TraesCS2D01G118700 chr4A 88.696 575 45 9 2048 2611 179163537 179162972 0.000000e+00 684.0
23 TraesCS2D01G118700 chr7A 90.058 513 43 6 1 508 491908179 491907670 0.000000e+00 658.0
24 TraesCS2D01G118700 chr7A 84.452 566 67 10 1907 2466 474915404 474915954 2.980000e-149 538.0
25 TraesCS2D01G118700 chr7A 87.879 66 8 0 2546 2611 474915949 474916014 7.810000e-11 78.7
26 TraesCS2D01G118700 chr7B 84.728 681 70 13 1950 2611 124406943 124407608 0.000000e+00 651.0
27 TraesCS2D01G118700 chr7B 92.437 238 18 0 1466 1703 504294309 504294072 9.030000e-90 340.0
28 TraesCS2D01G118700 chr3A 88.738 515 46 7 1 507 24379983 24379473 1.040000e-173 619.0
29 TraesCS2D01G118700 chr3A 88.636 88 7 2 2416 2503 467184421 467184337 1.290000e-18 104.0
30 TraesCS2D01G118700 chr3A 87.640 89 7 2 2415 2503 249021210 249021126 1.670000e-17 100.0
31 TraesCS2D01G118700 chr6D 98.195 277 4 1 1073 1349 348085330 348085055 1.420000e-132 483.0
32 TraesCS2D01G118700 chr6D 87.192 203 18 7 2 203 303926436 303926241 9.480000e-55 224.0
33 TraesCS2D01G118700 chr6D 79.907 214 36 3 1073 1285 43070402 43070195 1.630000e-32 150.0
34 TraesCS2D01G118700 chr6D 100.000 75 0 0 1347 1421 348084955 348084881 3.530000e-29 139.0
35 TraesCS2D01G118700 chr6A 98.195 277 4 1 1073 1349 495451003 495451278 1.420000e-132 483.0
36 TraesCS2D01G118700 chr6A 100.000 75 0 0 1347 1421 495451382 495451456 3.530000e-29 139.0
37 TraesCS2D01G118700 chr1A 89.474 380 34 4 134 508 488572699 488572321 2.370000e-130 475.0
38 TraesCS2D01G118700 chr6B 97.473 277 6 1 1073 1349 532044014 532044289 3.070000e-129 472.0
39 TraesCS2D01G118700 chr6B 88.325 197 16 6 1 196 226079086 226078896 2.040000e-56 230.0
40 TraesCS2D01G118700 chr6B 82.243 214 31 3 1073 1285 103663653 103663860 7.490000e-41 178.0
41 TraesCS2D01G118700 chr6B 100.000 75 0 0 1347 1421 532044391 532044465 3.530000e-29 139.0
42 TraesCS2D01G118700 chr6B 100.000 34 0 0 1767 1800 114556155 114556188 2.190000e-06 63.9
43 TraesCS2D01G118700 chr3D 86.603 418 39 11 2153 2560 281637678 281638088 1.860000e-121 446.0
44 TraesCS2D01G118700 chr3D 86.124 418 40 13 2154 2560 379430271 379430681 4.020000e-118 435.0
45 TraesCS2D01G118700 chr3D 84.444 315 21 6 694 981 336006875 336006562 4.290000e-73 285.0
46 TraesCS2D01G118700 chr3D 92.935 184 12 1 490 672 336007209 336007026 1.550000e-67 267.0
47 TraesCS2D01G118700 chr3D 92.617 149 11 0 1421 1569 336006560 336006412 5.710000e-52 215.0
48 TraesCS2D01G118700 chr3D 92.857 140 10 0 1564 1703 335997281 335997142 1.240000e-48 204.0
49 TraesCS2D01G118700 chr4D 85.749 414 48 7 2154 2560 36764071 36763662 6.730000e-116 427.0
50 TraesCS2D01G118700 chr4D 89.894 188 10 7 2 187 277122842 277122662 1.580000e-57 233.0
51 TraesCS2D01G118700 chr4D 87.685 203 18 6 2 203 403743982 403744178 2.040000e-56 230.0
52 TraesCS2D01G118700 chr4D 92.661 109 8 0 1697 1805 429650415 429650523 9.760000e-35 158.0
53 TraesCS2D01G118700 chr4D 94.118 51 3 0 2007 2057 459868107 459868057 7.810000e-11 78.7
54 TraesCS2D01G118700 chr2B 87.651 332 35 6 1802 2131 635232311 635231984 5.320000e-102 381.0
55 TraesCS2D01G118700 chr2B 85.196 331 41 6 1802 2130 320442727 320443051 1.510000e-87 333.0
56 TraesCS2D01G118700 chr2B 87.197 289 21 11 977 1265 681840347 681840075 5.470000e-82 315.0
57 TraesCS2D01G118700 chr2B 84.689 209 25 3 1073 1280 655011709 655011507 4.440000e-48 202.0
58 TraesCS2D01G118700 chr2B 87.640 178 11 2 958 1135 588049199 588049365 2.070000e-46 196.0
59 TraesCS2D01G118700 chr2B 96.491 57 2 0 830 886 588049126 588049182 7.760000e-16 95.3
60 TraesCS2D01G118700 chr5B 89.789 284 18 4 1066 1349 458386306 458386578 1.160000e-93 353.0
61 TraesCS2D01G118700 chr5B 98.667 75 1 0 1347 1421 458386676 458386750 1.640000e-27 134.0
62 TraesCS2D01G118700 chr5B 87.629 97 5 2 977 1073 458386125 458386214 3.580000e-19 106.0
63 TraesCS2D01G118700 chr5A 89.789 284 18 4 1066 1349 482315886 482316158 1.160000e-93 353.0
64 TraesCS2D01G118700 chr5A 98.667 75 1 0 1347 1421 482316254 482316328 1.640000e-27 134.0
65 TraesCS2D01G118700 chr5A 88.136 59 6 1 1483 1541 243925210 243925153 4.700000e-08 69.4
66 TraesCS2D01G118700 chr3B 87.429 175 11 6 961 1135 397107851 397107688 9.620000e-45 191.0
67 TraesCS2D01G118700 chr3B 90.000 70 7 0 823 892 397107934 397107865 1.000000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G118700 chr2D 68465875 68468507 2632 True 4863.000000 4863 100.000000 1 2633 1 chr2D.!!$R1 2632
1 TraesCS2D01G118700 chr2D 589406945 589408136 1191 False 491.666667 660 91.705667 1 1527 3 chr2D.!!$F3 1526
2 TraesCS2D01G118700 chr5D 466843406 466844287 881 True 1055.000000 1055 88.423000 1721 2611 1 chr5D.!!$R1 890
3 TraesCS2D01G118700 chr1D 370896786 370897659 873 False 1011.000000 1011 87.723000 1721 2600 1 chr1D.!!$F2 879
4 TraesCS2D01G118700 chr1B 485192960 485194301 1341 False 565.666667 737 90.796333 1 1703 3 chr1B.!!$F1 1702
5 TraesCS2D01G118700 chr4B 283102052 283103137 1085 True 672.000000 732 90.296000 1 1002 2 chr4B.!!$R1 1001
6 TraesCS2D01G118700 chr2A 287219312 287220038 726 False 708.000000 708 84.753000 1907 2611 1 chr2A.!!$F1 704
7 TraesCS2D01G118700 chr2A 578455321 578455885 564 True 218.500000 220 86.586000 490 923 2 chr2A.!!$R2 433
8 TraesCS2D01G118700 chr4A 179162972 179163537 565 True 684.000000 684 88.696000 2048 2611 1 chr4A.!!$R1 563
9 TraesCS2D01G118700 chr7A 491907670 491908179 509 True 658.000000 658 90.058000 1 508 1 chr7A.!!$R1 507
10 TraesCS2D01G118700 chr7A 474915404 474916014 610 False 308.350000 538 86.165500 1907 2611 2 chr7A.!!$F1 704
11 TraesCS2D01G118700 chr7B 124406943 124407608 665 False 651.000000 651 84.728000 1950 2611 1 chr7B.!!$F1 661
12 TraesCS2D01G118700 chr3A 24379473 24379983 510 True 619.000000 619 88.738000 1 507 1 chr3A.!!$R1 506
13 TraesCS2D01G118700 chr3D 336006412 336007209 797 True 255.666667 285 89.998667 490 1569 3 chr3D.!!$R2 1079

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 671 0.798776 CGGATTTGAGTCGCTTTGCT 59.201 50.0 0.00 0.00 0.0 3.91 F
1161 1405 0.038159 AGAAGGACAAGGAGAACGCG 60.038 55.0 3.53 3.53 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1640 0.254178 CCCAGTCCATCAGGTTGAGG 59.746 60.0 0.0 0.0 35.89 3.86 R
2385 2652 0.389391 CTCTGGTGACTTGACGTGGT 59.611 55.0 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 188 7.780313 CGAGAAGTTCGTAATTGTTTCAAGTA 58.220 34.615 0.00 0.00 44.27 2.24
312 337 5.485209 AGAGAAATAGAAGTCACCGGTTT 57.515 39.130 2.97 0.00 0.00 3.27
421 447 6.187682 GGAGTCAAGGGAATTAATGGAAAGA 58.812 40.000 0.00 0.00 0.00 2.52
541 629 2.299013 TGGAATTACTGATCGGATCCGG 59.701 50.000 32.79 19.38 40.25 5.14
583 671 0.798776 CGGATTTGAGTCGCTTTGCT 59.201 50.000 0.00 0.00 0.00 3.91
586 674 2.414691 GGATTTGAGTCGCTTTGCTTCC 60.415 50.000 0.00 0.00 0.00 3.46
592 680 1.809619 TCGCTTTGCTTCCGGATCG 60.810 57.895 4.15 0.00 0.00 3.69
628 716 1.643868 AAATCGCCGCGATCAGCAAA 61.644 50.000 27.42 0.00 46.30 3.68
782 999 2.235891 GACCCGGAAAACAGGAACAAT 58.764 47.619 0.73 0.00 0.00 2.71
1011 1255 3.933722 CGCTCCATGAGGCCGGAT 61.934 66.667 5.05 0.00 33.74 4.18
1012 1256 2.031768 GCTCCATGAGGCCGGATC 59.968 66.667 5.05 2.10 33.74 3.36
1013 1257 2.746359 CTCCATGAGGCCGGATCC 59.254 66.667 5.05 0.00 33.74 3.36
1014 1258 2.849162 TCCATGAGGCCGGATCCC 60.849 66.667 5.05 0.00 33.74 3.85
1016 1260 4.996434 CATGAGGCCGGATCCCGC 62.996 72.222 15.91 15.91 46.86 6.13
1024 1268 2.923035 CGGATCCCGCCCCTACAT 60.923 66.667 6.06 0.00 41.17 2.29
1025 1269 2.750350 GGATCCCGCCCCTACATG 59.250 66.667 0.00 0.00 0.00 3.21
1026 1270 2.032681 GATCCCGCCCCTACATGC 59.967 66.667 0.00 0.00 0.00 4.06
1027 1271 3.553095 GATCCCGCCCCTACATGCC 62.553 68.421 0.00 0.00 0.00 4.40
1033 1277 4.181010 CCCCTACATGCCGCTGCT 62.181 66.667 0.70 0.00 38.71 4.24
1034 1278 2.590007 CCCTACATGCCGCTGCTC 60.590 66.667 0.70 0.00 38.71 4.26
1035 1279 2.187685 CCTACATGCCGCTGCTCA 59.812 61.111 0.70 0.00 38.71 4.26
1036 1280 1.886313 CCTACATGCCGCTGCTCAG 60.886 63.158 0.70 0.00 38.71 3.35
1046 1290 2.433838 CTGCTCAGCACCACCTCG 60.434 66.667 0.00 0.00 33.79 4.63
1047 1291 4.687215 TGCTCAGCACCACCTCGC 62.687 66.667 0.00 0.00 31.71 5.03
1054 1298 4.988598 CACCACCTCGCGCAACCT 62.989 66.667 8.75 0.00 0.00 3.50
1055 1299 4.681978 ACCACCTCGCGCAACCTC 62.682 66.667 8.75 0.00 0.00 3.85
1058 1302 4.719369 ACCTCGCGCAACCTCGTC 62.719 66.667 8.75 0.00 0.00 4.20
1059 1303 4.717629 CCTCGCGCAACCTCGTCA 62.718 66.667 8.75 0.00 0.00 4.35
1060 1304 3.175240 CTCGCGCAACCTCGTCAG 61.175 66.667 8.75 0.00 0.00 3.51
1064 1308 2.664851 CGCAACCTCGTCAGCCAA 60.665 61.111 0.00 0.00 0.00 4.52
1065 1309 2.671177 CGCAACCTCGTCAGCCAAG 61.671 63.158 0.00 0.00 0.00 3.61
1066 1310 1.598130 GCAACCTCGTCAGCCAAGT 60.598 57.895 0.00 0.00 0.00 3.16
1067 1311 1.845809 GCAACCTCGTCAGCCAAGTG 61.846 60.000 0.00 0.00 0.00 3.16
1068 1312 1.598130 AACCTCGTCAGCCAAGTGC 60.598 57.895 0.00 0.00 41.71 4.40
1077 1321 2.436115 GCCAAGTGCTACGGGGAC 60.436 66.667 0.00 0.00 36.87 4.46
1078 1322 3.065306 CCAAGTGCTACGGGGACA 58.935 61.111 5.31 0.00 38.81 4.02
1079 1323 1.079127 CCAAGTGCTACGGGGACAG 60.079 63.158 5.31 0.00 38.81 3.51
1080 1324 1.079127 CAAGTGCTACGGGGACAGG 60.079 63.158 5.31 0.00 38.81 4.00
1081 1325 1.535687 AAGTGCTACGGGGACAGGT 60.536 57.895 5.31 0.00 38.81 4.00
1082 1326 1.125711 AAGTGCTACGGGGACAGGTT 61.126 55.000 5.31 0.00 38.81 3.50
1083 1327 1.079336 GTGCTACGGGGACAGGTTC 60.079 63.158 0.00 0.00 36.25 3.62
1084 1328 1.534476 TGCTACGGGGACAGGTTCA 60.534 57.895 0.00 0.00 0.00 3.18
1085 1329 0.907704 TGCTACGGGGACAGGTTCAT 60.908 55.000 0.00 0.00 0.00 2.57
1086 1330 0.179081 GCTACGGGGACAGGTTCATC 60.179 60.000 0.00 0.00 0.00 2.92
1087 1331 0.464452 CTACGGGGACAGGTTCATCC 59.536 60.000 0.00 0.00 0.00 3.51
1090 1334 2.590092 GGGACAGGTTCATCCCGG 59.410 66.667 0.00 0.00 45.26 5.73
1091 1335 1.993391 GGGACAGGTTCATCCCGGA 60.993 63.158 0.73 0.00 45.26 5.14
1092 1336 1.221021 GGACAGGTTCATCCCGGAC 59.779 63.158 0.73 0.00 36.75 4.79
1093 1337 1.221021 GACAGGTTCATCCCGGACC 59.779 63.158 0.73 0.86 36.75 4.46
1094 1338 2.186903 CAGGTTCATCCCGGACCG 59.813 66.667 6.99 6.99 38.48 4.79
1096 1340 3.396570 GGTTCATCCCGGACCGGT 61.397 66.667 30.60 6.92 46.80 5.28
1097 1341 2.186125 GTTCATCCCGGACCGGTC 59.814 66.667 30.60 27.04 46.80 4.79
1098 1342 2.284039 TTCATCCCGGACCGGTCA 60.284 61.111 34.40 17.68 46.80 4.02
1099 1343 2.355986 TTCATCCCGGACCGGTCAG 61.356 63.158 34.40 30.07 46.80 3.51
1100 1344 4.530857 CATCCCGGACCGGTCAGC 62.531 72.222 34.40 18.08 46.80 4.26
1104 1348 4.873129 CCGGACCGGTCAGCGATG 62.873 72.222 34.40 14.88 42.73 3.84
1105 1349 4.873129 CGGACCGGTCAGCGATGG 62.873 72.222 34.40 11.18 0.00 3.51
1106 1350 3.458163 GGACCGGTCAGCGATGGA 61.458 66.667 34.40 0.00 0.00 3.41
1107 1351 2.202756 GACCGGTCAGCGATGGAC 60.203 66.667 29.75 0.00 34.52 4.02
1108 1352 2.994995 ACCGGTCAGCGATGGACA 60.995 61.111 0.00 0.00 37.00 4.02
1109 1353 2.298158 GACCGGTCAGCGATGGACAT 62.298 60.000 29.75 0.00 37.00 3.06
1110 1354 1.884464 CCGGTCAGCGATGGACATG 60.884 63.158 0.00 0.00 37.00 3.21
1111 1355 1.884464 CGGTCAGCGATGGACATGG 60.884 63.158 0.00 0.00 37.00 3.66
1112 1356 1.522092 GGTCAGCGATGGACATGGA 59.478 57.895 0.00 0.00 37.00 3.41
1113 1357 0.811616 GGTCAGCGATGGACATGGAC 60.812 60.000 0.00 0.00 37.00 4.02
1114 1358 0.108186 GTCAGCGATGGACATGGACA 60.108 55.000 0.00 0.00 35.36 4.02
1115 1359 0.832626 TCAGCGATGGACATGGACAT 59.167 50.000 0.00 0.23 0.00 3.06
1116 1360 0.942252 CAGCGATGGACATGGACATG 59.058 55.000 10.57 10.57 44.15 3.21
1117 1361 0.179037 AGCGATGGACATGGACATGG 60.179 55.000 15.94 8.80 42.91 3.66
1118 1362 1.789078 GCGATGGACATGGACATGGC 61.789 60.000 17.96 17.96 46.06 4.40
1122 1366 2.793946 GACATGGACATGGCGCAC 59.206 61.111 10.83 0.00 42.91 5.34
1123 1367 1.746615 GACATGGACATGGCGCACT 60.747 57.895 10.83 0.00 42.91 4.40
1124 1368 0.461870 GACATGGACATGGCGCACTA 60.462 55.000 10.83 0.00 42.91 2.74
1125 1369 0.744414 ACATGGACATGGCGCACTAC 60.744 55.000 10.83 0.00 42.91 2.73
1126 1370 1.153168 ATGGACATGGCGCACTACC 60.153 57.895 10.83 6.32 0.00 3.18
1127 1371 1.626356 ATGGACATGGCGCACTACCT 61.626 55.000 10.83 0.00 0.00 3.08
1128 1372 1.815421 GGACATGGCGCACTACCTG 60.815 63.158 10.83 0.00 0.00 4.00
1129 1373 2.436646 ACATGGCGCACTACCTGC 60.437 61.111 10.83 0.00 43.21 4.85
1130 1374 2.124983 CATGGCGCACTACCTGCT 60.125 61.111 10.83 0.00 44.64 4.24
1131 1375 2.176273 CATGGCGCACTACCTGCTC 61.176 63.158 10.83 0.00 44.64 4.26
1132 1376 2.659063 ATGGCGCACTACCTGCTCA 61.659 57.895 10.83 0.00 44.64 4.26
1133 1377 2.815647 GGCGCACTACCTGCTCAC 60.816 66.667 10.83 0.00 44.64 3.51
1134 1378 3.181967 GCGCACTACCTGCTCACG 61.182 66.667 0.30 0.00 44.64 4.35
1135 1379 2.507102 CGCACTACCTGCTCACGG 60.507 66.667 0.00 0.00 44.64 4.94
1136 1380 2.970639 GCACTACCTGCTCACGGA 59.029 61.111 0.00 0.00 43.33 4.69
1137 1381 1.153745 GCACTACCTGCTCACGGAG 60.154 63.158 0.00 0.00 43.33 4.63
1138 1382 1.595993 GCACTACCTGCTCACGGAGA 61.596 60.000 5.24 0.00 43.33 3.71
1139 1383 0.171455 CACTACCTGCTCACGGAGAC 59.829 60.000 5.24 0.00 0.00 3.36
1140 1384 0.966370 ACTACCTGCTCACGGAGACC 60.966 60.000 5.24 0.00 0.00 3.85
1141 1385 0.965866 CTACCTGCTCACGGAGACCA 60.966 60.000 5.24 0.00 0.00 4.02
1142 1386 0.541063 TACCTGCTCACGGAGACCAA 60.541 55.000 5.24 0.00 0.00 3.67
1143 1387 1.079543 CCTGCTCACGGAGACCAAG 60.080 63.158 5.24 0.00 0.00 3.61
1144 1388 1.536073 CCTGCTCACGGAGACCAAGA 61.536 60.000 5.24 0.00 0.00 3.02
1145 1389 0.318441 CTGCTCACGGAGACCAAGAA 59.682 55.000 5.24 0.00 0.00 2.52
1146 1390 0.318441 TGCTCACGGAGACCAAGAAG 59.682 55.000 5.24 0.00 0.00 2.85
1147 1391 0.390472 GCTCACGGAGACCAAGAAGG 60.390 60.000 5.24 0.00 45.67 3.46
1148 1392 1.257743 CTCACGGAGACCAAGAAGGA 58.742 55.000 0.00 0.00 41.22 3.36
1149 1393 0.966920 TCACGGAGACCAAGAAGGAC 59.033 55.000 0.00 0.00 41.22 3.85
1150 1394 0.679505 CACGGAGACCAAGAAGGACA 59.320 55.000 0.00 0.00 41.22 4.02
1151 1395 1.070134 CACGGAGACCAAGAAGGACAA 59.930 52.381 0.00 0.00 41.22 3.18
1152 1396 1.344763 ACGGAGACCAAGAAGGACAAG 59.655 52.381 0.00 0.00 41.22 3.16
1153 1397 1.338200 CGGAGACCAAGAAGGACAAGG 60.338 57.143 0.00 0.00 41.22 3.61
1154 1398 1.978580 GGAGACCAAGAAGGACAAGGA 59.021 52.381 0.00 0.00 41.22 3.36
1155 1399 2.027653 GGAGACCAAGAAGGACAAGGAG 60.028 54.545 0.00 0.00 41.22 3.69
1156 1400 2.900546 GAGACCAAGAAGGACAAGGAGA 59.099 50.000 0.00 0.00 41.22 3.71
1157 1401 3.318313 AGACCAAGAAGGACAAGGAGAA 58.682 45.455 0.00 0.00 41.22 2.87
1158 1402 3.071747 AGACCAAGAAGGACAAGGAGAAC 59.928 47.826 0.00 0.00 41.22 3.01
1159 1403 2.224305 ACCAAGAAGGACAAGGAGAACG 60.224 50.000 0.00 0.00 41.22 3.95
1160 1404 1.801178 CAAGAAGGACAAGGAGAACGC 59.199 52.381 0.00 0.00 0.00 4.84
1161 1405 0.038159 AGAAGGACAAGGAGAACGCG 60.038 55.000 3.53 3.53 0.00 6.01
1162 1406 1.004918 AAGGACAAGGAGAACGCGG 60.005 57.895 12.47 0.00 0.00 6.46
1163 1407 3.119096 GGACAAGGAGAACGCGGC 61.119 66.667 12.47 1.16 0.00 6.53
1164 1408 3.479269 GACAAGGAGAACGCGGCG 61.479 66.667 22.36 22.36 0.00 6.46
1191 1435 3.787001 GCGTCCCCCTCCAAGGAG 61.787 72.222 9.20 9.20 37.67 3.69
1199 1443 2.494918 CTCCAAGGAGGCGTACCG 59.505 66.667 8.28 0.00 42.76 4.02
1200 1444 3.072468 TCCAAGGAGGCGTACCGG 61.072 66.667 0.00 0.00 42.76 5.28
1201 1445 3.072468 CCAAGGAGGCGTACCGGA 61.072 66.667 9.46 0.00 42.76 5.14
1202 1446 2.494918 CAAGGAGGCGTACCGGAG 59.505 66.667 9.46 0.00 42.76 4.63
1215 1459 4.560856 CGGAGGCTTCTCGCGGAG 62.561 72.222 6.13 2.33 40.44 4.63
1216 1460 3.141488 GGAGGCTTCTCGCGGAGA 61.141 66.667 6.13 5.10 40.44 3.71
1217 1461 2.711922 GGAGGCTTCTCGCGGAGAA 61.712 63.158 6.13 13.06 45.01 2.87
1222 1466 2.125912 TTCTCGCGGAGAAGCTGC 60.126 61.111 6.13 0.00 42.78 5.25
1227 1471 3.172919 GCGGAGAAGCTGCTCAAC 58.827 61.111 23.57 10.61 45.70 3.18
1228 1472 1.669115 GCGGAGAAGCTGCTCAACA 60.669 57.895 23.57 0.00 45.70 3.33
1229 1473 1.230635 GCGGAGAAGCTGCTCAACAA 61.231 55.000 23.57 0.00 45.70 2.83
1230 1474 0.514691 CGGAGAAGCTGCTCAACAAC 59.485 55.000 23.57 4.47 36.62 3.32
1231 1475 0.877743 GGAGAAGCTGCTCAACAACC 59.122 55.000 23.57 1.16 36.62 3.77
1232 1476 0.514691 GAGAAGCTGCTCAACAACCG 59.485 55.000 17.54 0.00 35.01 4.44
1233 1477 0.886490 AGAAGCTGCTCAACAACCGG 60.886 55.000 1.00 0.00 0.00 5.28
1234 1478 0.884704 GAAGCTGCTCAACAACCGGA 60.885 55.000 9.46 0.00 0.00 5.14
1235 1479 1.166531 AAGCTGCTCAACAACCGGAC 61.167 55.000 9.46 0.00 0.00 4.79
1236 1480 2.954753 GCTGCTCAACAACCGGACG 61.955 63.158 9.46 0.00 0.00 4.79
1237 1481 2.954753 CTGCTCAACAACCGGACGC 61.955 63.158 9.46 0.00 0.00 5.19
1238 1482 4.072088 GCTCAACAACCGGACGCG 62.072 66.667 9.46 3.53 0.00 6.01
1239 1483 3.411351 CTCAACAACCGGACGCGG 61.411 66.667 9.46 0.00 0.00 6.46
1240 1484 3.851845 CTCAACAACCGGACGCGGA 62.852 63.158 9.46 0.00 0.00 5.54
1241 1485 2.740826 CAACAACCGGACGCGGAT 60.741 61.111 9.46 0.00 0.00 4.18
1242 1486 2.433664 AACAACCGGACGCGGATC 60.434 61.111 9.46 0.00 0.00 3.36
1243 1487 3.945304 AACAACCGGACGCGGATCC 62.945 63.158 9.46 8.60 35.16 3.36
1244 1488 4.143333 CAACCGGACGCGGATCCT 62.143 66.667 9.46 0.00 36.52 3.24
1245 1489 3.834799 AACCGGACGCGGATCCTC 61.835 66.667 9.46 0.00 36.52 3.71
1254 1498 3.610669 CGGATCCTCGCCCTCAGG 61.611 72.222 10.75 0.00 0.00 3.86
1255 1499 2.123251 GGATCCTCGCCCTCAGGA 60.123 66.667 3.84 0.00 44.46 3.86
1256 1500 1.762460 GGATCCTCGCCCTCAGGAA 60.762 63.158 3.84 0.00 43.54 3.36
1257 1501 1.443828 GATCCTCGCCCTCAGGAAC 59.556 63.158 0.00 0.00 43.54 3.62
1258 1502 1.306141 ATCCTCGCCCTCAGGAACA 60.306 57.895 0.00 0.00 43.54 3.18
1259 1503 0.909610 ATCCTCGCCCTCAGGAACAA 60.910 55.000 0.00 0.00 43.54 2.83
1260 1504 1.078848 CCTCGCCCTCAGGAACAAG 60.079 63.158 0.00 0.00 31.91 3.16
1261 1505 1.743252 CTCGCCCTCAGGAACAAGC 60.743 63.158 0.00 0.00 33.47 4.01
1262 1506 2.747855 CGCCCTCAGGAACAAGCC 60.748 66.667 0.00 0.00 33.47 4.35
1263 1507 2.747855 GCCCTCAGGAACAAGCCG 60.748 66.667 0.00 0.00 33.47 5.52
1264 1508 2.747855 CCCTCAGGAACAAGCCGC 60.748 66.667 0.00 0.00 33.47 6.53
1265 1509 2.747855 CCTCAGGAACAAGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
1266 1510 3.121030 CTCAGGAACAAGCCGCCG 61.121 66.667 0.00 0.00 0.00 6.46
1267 1511 4.697756 TCAGGAACAAGCCGCCGG 62.698 66.667 0.00 0.00 0.00 6.13
1268 1512 4.697756 CAGGAACAAGCCGCCGGA 62.698 66.667 7.68 0.00 0.00 5.14
1269 1513 4.394712 AGGAACAAGCCGCCGGAG 62.395 66.667 7.68 0.00 0.00 4.63
1282 1526 3.211288 CGGAGCCGGAGAACATCT 58.789 61.111 5.05 0.00 35.56 2.90
1283 1527 1.517832 CGGAGCCGGAGAACATCTT 59.482 57.895 5.05 0.00 35.56 2.40
1284 1528 0.528684 CGGAGCCGGAGAACATCTTC 60.529 60.000 5.05 0.00 35.56 2.87
1285 1529 0.528684 GGAGCCGGAGAACATCTTCG 60.529 60.000 5.05 1.02 44.85 3.79
1286 1530 1.148759 GAGCCGGAGAACATCTTCGC 61.149 60.000 5.05 0.00 43.94 4.70
1287 1531 1.153549 GCCGGAGAACATCTTCGCT 60.154 57.895 5.05 0.00 43.94 4.93
1288 1532 1.424493 GCCGGAGAACATCTTCGCTG 61.424 60.000 5.05 0.00 43.94 5.18
1289 1533 1.424493 CCGGAGAACATCTTCGCTGC 61.424 60.000 0.00 0.00 43.94 5.25
1290 1534 1.424493 CGGAGAACATCTTCGCTGCC 61.424 60.000 0.00 0.00 38.82 4.85
1291 1535 1.424493 GGAGAACATCTTCGCTGCCG 61.424 60.000 0.00 0.00 0.00 5.69
1292 1536 0.458543 GAGAACATCTTCGCTGCCGA 60.459 55.000 0.00 0.00 42.66 5.54
1293 1537 0.737715 AGAACATCTTCGCTGCCGAC 60.738 55.000 0.00 0.00 44.30 4.79
1294 1538 1.005037 AACATCTTCGCTGCCGACA 60.005 52.632 0.00 0.00 44.30 4.35
1295 1539 1.291877 AACATCTTCGCTGCCGACAC 61.292 55.000 0.00 0.00 44.30 3.67
1296 1540 1.737735 CATCTTCGCTGCCGACACA 60.738 57.895 0.00 0.00 44.30 3.72
1297 1541 1.446792 ATCTTCGCTGCCGACACAG 60.447 57.895 0.00 0.00 44.30 3.66
1298 1542 2.842394 ATCTTCGCTGCCGACACAGG 62.842 60.000 0.00 0.00 44.30 4.00
1299 1543 3.865929 CTTCGCTGCCGACACAGGT 62.866 63.158 0.00 0.00 44.30 4.00
1300 1544 3.454587 TTCGCTGCCGACACAGGTT 62.455 57.895 0.00 0.00 44.30 3.50
1301 1545 2.933878 TTCGCTGCCGACACAGGTTT 62.934 55.000 0.00 0.00 44.30 3.27
1302 1546 2.946762 GCTGCCGACACAGGTTTC 59.053 61.111 0.00 0.00 38.16 2.78
1303 1547 1.598130 GCTGCCGACACAGGTTTCT 60.598 57.895 0.00 0.00 38.16 2.52
1304 1548 1.166531 GCTGCCGACACAGGTTTCTT 61.167 55.000 0.00 0.00 38.16 2.52
1305 1549 0.868406 CTGCCGACACAGGTTTCTTC 59.132 55.000 0.00 0.00 33.85 2.87
1306 1550 0.468226 TGCCGACACAGGTTTCTTCT 59.532 50.000 0.00 0.00 0.00 2.85
1307 1551 1.149148 GCCGACACAGGTTTCTTCTC 58.851 55.000 0.00 0.00 0.00 2.87
1308 1552 1.540363 GCCGACACAGGTTTCTTCTCA 60.540 52.381 0.00 0.00 0.00 3.27
1309 1553 2.135933 CCGACACAGGTTTCTTCTCAC 58.864 52.381 0.00 0.00 0.00 3.51
1310 1554 2.135933 CGACACAGGTTTCTTCTCACC 58.864 52.381 0.00 0.00 0.00 4.02
1311 1555 2.483013 CGACACAGGTTTCTTCTCACCA 60.483 50.000 0.00 0.00 35.25 4.17
1312 1556 3.134458 GACACAGGTTTCTTCTCACCAG 58.866 50.000 0.00 0.00 35.25 4.00
1313 1557 2.158755 ACACAGGTTTCTTCTCACCAGG 60.159 50.000 0.00 0.00 35.25 4.45
1314 1558 1.202818 ACAGGTTTCTTCTCACCAGGC 60.203 52.381 0.00 0.00 35.25 4.85
1315 1559 0.402121 AGGTTTCTTCTCACCAGGCC 59.598 55.000 0.00 0.00 35.25 5.19
1316 1560 0.110486 GGTTTCTTCTCACCAGGCCA 59.890 55.000 5.01 0.00 32.74 5.36
1317 1561 1.478654 GGTTTCTTCTCACCAGGCCAA 60.479 52.381 5.01 0.00 32.74 4.52
1318 1562 1.882623 GTTTCTTCTCACCAGGCCAAG 59.117 52.381 5.01 0.00 0.00 3.61
1319 1563 0.250901 TTCTTCTCACCAGGCCAAGC 60.251 55.000 5.01 0.00 0.00 4.01
1332 1576 3.437795 CAAGCCGGCCAAGCAGAG 61.438 66.667 26.15 0.00 0.00 3.35
1333 1577 4.729918 AAGCCGGCCAAGCAGAGG 62.730 66.667 26.15 1.76 0.00 3.69
1344 1588 3.724494 GCAGAGGCGCTACATTCC 58.276 61.111 7.64 0.00 0.00 3.01
1345 1589 1.889573 GCAGAGGCGCTACATTCCC 60.890 63.158 7.64 0.00 0.00 3.97
1346 1590 1.227674 CAGAGGCGCTACATTCCCC 60.228 63.158 7.64 0.00 0.00 4.81
1347 1591 1.689233 AGAGGCGCTACATTCCCCA 60.689 57.895 7.64 0.00 0.00 4.96
1348 1592 1.227674 GAGGCGCTACATTCCCCAG 60.228 63.158 7.64 0.00 0.00 4.45
1349 1593 1.972660 GAGGCGCTACATTCCCCAGT 61.973 60.000 7.64 0.00 0.00 4.00
1350 1594 1.523938 GGCGCTACATTCCCCAGTC 60.524 63.158 7.64 0.00 0.00 3.51
1351 1595 1.522569 GCGCTACATTCCCCAGTCT 59.477 57.895 0.00 0.00 0.00 3.24
1352 1596 0.811616 GCGCTACATTCCCCAGTCTG 60.812 60.000 0.00 0.00 0.00 3.51
1353 1597 0.811616 CGCTACATTCCCCAGTCTGC 60.812 60.000 0.00 0.00 0.00 4.26
1354 1598 0.464554 GCTACATTCCCCAGTCTGCC 60.465 60.000 0.00 0.00 0.00 4.85
1355 1599 0.179073 CTACATTCCCCAGTCTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
1356 1600 0.616395 TACATTCCCCAGTCTGCCGA 60.616 55.000 0.00 0.00 0.00 5.54
1357 1601 1.153289 CATTCCCCAGTCTGCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
1358 1602 1.306141 ATTCCCCAGTCTGCCGAGA 60.306 57.895 0.00 0.00 0.00 4.04
1359 1603 1.333636 ATTCCCCAGTCTGCCGAGAG 61.334 60.000 0.00 0.00 0.00 3.20
1372 1616 2.498077 CGAGAGGACTCTGGATGCA 58.502 57.895 6.57 0.00 40.61 3.96
1373 1617 0.102120 CGAGAGGACTCTGGATGCAC 59.898 60.000 6.57 0.00 40.61 4.57
1374 1618 0.463620 GAGAGGACTCTGGATGCACC 59.536 60.000 6.57 0.00 40.61 5.01
1375 1619 1.142748 GAGGACTCTGGATGCACCG 59.857 63.158 0.00 0.00 42.61 4.94
1376 1620 2.187946 GGACTCTGGATGCACCGG 59.812 66.667 0.00 0.00 45.93 5.28
1382 1626 3.770040 TGGATGCACCGGACCTCG 61.770 66.667 9.46 0.00 42.61 4.63
1383 1627 3.771160 GGATGCACCGGACCTCGT 61.771 66.667 9.46 0.00 37.11 4.18
1384 1628 2.202756 GATGCACCGGACCTCGTC 60.203 66.667 9.46 0.77 37.11 4.20
1385 1629 4.129737 ATGCACCGGACCTCGTCG 62.130 66.667 9.46 0.00 37.11 5.12
1387 1631 4.773117 GCACCGGACCTCGTCGAC 62.773 72.222 9.46 5.18 37.11 4.20
1388 1632 4.456253 CACCGGACCTCGTCGACG 62.456 72.222 31.30 31.30 41.45 5.12
1390 1634 4.157958 CCGGACCTCGTCGACGAC 62.158 72.222 34.97 24.85 44.22 4.34
1391 1635 3.117171 CGGACCTCGTCGACGACT 61.117 66.667 34.97 22.91 44.22 4.18
1392 1636 1.807165 CGGACCTCGTCGACGACTA 60.807 63.158 34.97 16.80 44.22 2.59
1393 1637 1.712663 GGACCTCGTCGACGACTAC 59.287 63.158 34.97 25.31 44.22 2.73
1394 1638 0.739112 GGACCTCGTCGACGACTACT 60.739 60.000 34.97 17.58 44.22 2.57
1395 1639 1.469940 GGACCTCGTCGACGACTACTA 60.470 57.143 34.97 15.27 44.22 1.82
1396 1640 1.586123 GACCTCGTCGACGACTACTAC 59.414 57.143 34.97 18.63 44.22 2.73
1397 1641 0.926846 CCTCGTCGACGACTACTACC 59.073 60.000 34.97 0.00 44.22 3.18
1398 1642 1.470632 CCTCGTCGACGACTACTACCT 60.471 57.143 34.97 0.00 44.22 3.08
1399 1643 1.851666 CTCGTCGACGACTACTACCTC 59.148 57.143 34.97 0.00 44.22 3.85
1400 1644 1.202348 TCGTCGACGACTACTACCTCA 59.798 52.381 34.97 10.04 44.22 3.86
1401 1645 1.995484 CGTCGACGACTACTACCTCAA 59.005 52.381 33.35 0.00 43.02 3.02
1402 1646 2.222685 CGTCGACGACTACTACCTCAAC 60.223 54.545 33.35 0.00 43.02 3.18
1403 1647 2.095053 GTCGACGACTACTACCTCAACC 59.905 54.545 20.52 0.00 0.00 3.77
1404 1648 2.027745 TCGACGACTACTACCTCAACCT 60.028 50.000 0.00 0.00 0.00 3.50
1405 1649 2.095532 CGACGACTACTACCTCAACCTG 59.904 54.545 0.00 0.00 0.00 4.00
1406 1650 3.341823 GACGACTACTACCTCAACCTGA 58.658 50.000 0.00 0.00 0.00 3.86
1407 1651 3.946558 GACGACTACTACCTCAACCTGAT 59.053 47.826 0.00 0.00 0.00 2.90
1408 1652 3.695060 ACGACTACTACCTCAACCTGATG 59.305 47.826 0.00 0.00 0.00 3.07
1409 1653 3.066900 CGACTACTACCTCAACCTGATGG 59.933 52.174 0.00 0.00 39.83 3.51
1410 1654 4.279145 GACTACTACCTCAACCTGATGGA 58.721 47.826 0.00 0.00 37.04 3.41
1411 1655 4.024670 ACTACTACCTCAACCTGATGGAC 58.975 47.826 0.00 0.00 37.04 4.02
1412 1656 3.191888 ACTACCTCAACCTGATGGACT 57.808 47.619 0.00 0.00 37.04 3.85
1413 1657 2.834549 ACTACCTCAACCTGATGGACTG 59.165 50.000 0.00 0.00 37.04 3.51
1414 1658 0.987294 ACCTCAACCTGATGGACTGG 59.013 55.000 0.00 0.00 42.26 4.00
1415 1659 0.254178 CCTCAACCTGATGGACTGGG 59.746 60.000 0.00 0.00 41.11 4.45
1416 1660 0.254178 CTCAACCTGATGGACTGGGG 59.746 60.000 0.00 0.00 41.11 4.96
1417 1661 1.207488 TCAACCTGATGGACTGGGGG 61.207 60.000 0.00 0.00 41.11 5.40
1418 1662 1.163309 AACCTGATGGACTGGGGGA 59.837 57.895 0.00 0.00 41.11 4.81
1585 1829 2.588731 GTTTGCACTTCCAAACCGC 58.411 52.632 6.52 0.00 45.41 5.68
1703 1947 1.268992 ACCCACCAGTATTGCCGCTA 61.269 55.000 0.00 0.00 0.00 4.26
1704 1948 0.108585 CCCACCAGTATTGCCGCTAT 59.891 55.000 0.00 0.00 0.00 2.97
1705 1949 1.512926 CCACCAGTATTGCCGCTATC 58.487 55.000 0.00 0.00 0.00 2.08
1706 1950 1.512926 CACCAGTATTGCCGCTATCC 58.487 55.000 0.00 0.00 0.00 2.59
1707 1951 1.070758 CACCAGTATTGCCGCTATCCT 59.929 52.381 0.00 0.00 0.00 3.24
1708 1952 1.768870 ACCAGTATTGCCGCTATCCTT 59.231 47.619 0.00 0.00 0.00 3.36
1709 1953 2.146342 CCAGTATTGCCGCTATCCTTG 58.854 52.381 0.00 0.00 0.00 3.61
1710 1954 1.532868 CAGTATTGCCGCTATCCTTGC 59.467 52.381 0.00 0.00 0.00 4.01
1711 1955 1.417890 AGTATTGCCGCTATCCTTGCT 59.582 47.619 0.00 0.00 0.00 3.91
1712 1956 2.632996 AGTATTGCCGCTATCCTTGCTA 59.367 45.455 0.00 0.00 0.00 3.49
1713 1957 2.175878 ATTGCCGCTATCCTTGCTAG 57.824 50.000 0.00 0.00 0.00 3.42
1714 1958 1.119684 TTGCCGCTATCCTTGCTAGA 58.880 50.000 0.00 0.00 0.00 2.43
1715 1959 0.676184 TGCCGCTATCCTTGCTAGAG 59.324 55.000 0.00 0.00 0.00 2.43
1716 1960 0.669012 GCCGCTATCCTTGCTAGAGC 60.669 60.000 0.00 0.00 42.50 4.09
1717 1961 0.037790 CCGCTATCCTTGCTAGAGCC 60.038 60.000 0.00 0.00 41.18 4.70
1718 1962 0.965439 CGCTATCCTTGCTAGAGCCT 59.035 55.000 0.00 0.00 41.18 4.58
1719 1963 1.336702 CGCTATCCTTGCTAGAGCCTG 60.337 57.143 0.00 0.00 41.18 4.85
1741 1985 1.662309 CGCTGACTGCAGAGCAAAAAG 60.662 52.381 23.35 7.25 45.17 2.27
1744 1988 2.877168 CTGACTGCAGAGCAAAAAGTCT 59.123 45.455 23.35 0.00 45.17 3.24
1751 1995 3.406764 CAGAGCAAAAAGTCTAGTGGCT 58.593 45.455 0.00 0.00 0.00 4.75
1756 2000 5.377478 AGCAAAAAGTCTAGTGGCTAAGTT 58.623 37.500 0.00 0.00 0.00 2.66
1758 2002 5.452777 CAAAAAGTCTAGTGGCTAAGTTGC 58.547 41.667 0.00 0.00 0.00 4.17
1765 2009 3.395669 GGCTAAGTTGCCGCTACG 58.604 61.111 0.00 0.00 43.74 3.51
1878 2122 2.870372 GTGGACGCATGCCAAGTC 59.130 61.111 13.15 13.58 37.12 3.01
1886 2130 3.058160 ATGCCAAGTCGCCACTGC 61.058 61.111 0.00 0.00 31.06 4.40
1927 2171 0.951040 CAGTTTCCGTGGAGTCAGCC 60.951 60.000 0.00 0.00 0.00 4.85
1978 2222 3.414700 GTTGCTGCCGTGTCTCCG 61.415 66.667 0.00 0.00 0.00 4.63
2192 2437 1.202770 CCAAGTCCTCCGGTTTTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
2262 2511 0.659957 GATCGCTGGCCTGCTTTTAG 59.340 55.000 29.18 15.27 0.00 1.85
2289 2538 2.161012 GCTTTAAGCCGGTCTTACCAAC 59.839 50.000 15.18 5.23 38.47 3.77
2369 2618 0.173708 CCCGACTTAGTGAGGCTGTC 59.826 60.000 0.00 0.00 0.00 3.51
2385 2652 2.030401 GTCACGCCACGGTATTGCA 61.030 57.895 0.00 0.00 0.00 4.08
2470 2746 5.625150 TGGAAAGAAAGAGGAAAAGAGAGG 58.375 41.667 0.00 0.00 0.00 3.69
2521 2815 2.781431 CTAGGGCCCCCAACAACCAC 62.781 65.000 21.43 0.00 38.92 4.16
2572 2866 3.190535 GTGCTACCACCGATTGTCATTTT 59.809 43.478 0.00 0.00 35.92 1.82
2611 2905 8.460428 GCTATACTAGTCCATCATTACCAGTAC 58.540 40.741 0.00 0.00 0.00 2.73
2612 2906 9.742144 CTATACTAGTCCATCATTACCAGTACT 57.258 37.037 0.00 0.00 0.00 2.73
2614 2908 9.742144 ATACTAGTCCATCATTACCAGTACTAG 57.258 37.037 0.00 0.00 40.48 2.57
2615 2909 7.584532 ACTAGTCCATCATTACCAGTACTAGT 58.415 38.462 0.00 0.00 42.01 2.57
2616 2910 6.716934 AGTCCATCATTACCAGTACTAGTG 57.283 41.667 5.39 0.00 0.00 2.74
2617 2911 5.598830 AGTCCATCATTACCAGTACTAGTGG 59.401 44.000 5.39 8.24 44.34 4.00
2618 2912 5.597182 GTCCATCATTACCAGTACTAGTGGA 59.403 44.000 15.82 0.00 41.28 4.02
2619 2913 5.597182 TCCATCATTACCAGTACTAGTGGAC 59.403 44.000 15.82 0.00 41.28 4.02
2620 2914 5.221461 CCATCATTACCAGTACTAGTGGACC 60.221 48.000 15.82 0.00 41.28 4.46
2621 2915 4.284178 TCATTACCAGTACTAGTGGACCC 58.716 47.826 15.82 0.00 41.28 4.46
2622 2916 2.425143 TACCAGTACTAGTGGACCCG 57.575 55.000 15.82 0.00 41.28 5.28
2623 2917 0.407139 ACCAGTACTAGTGGACCCGT 59.593 55.000 15.82 0.00 41.28 5.28
2624 2918 1.203100 ACCAGTACTAGTGGACCCGTT 60.203 52.381 15.82 0.00 41.28 4.44
2625 2919 1.203994 CCAGTACTAGTGGACCCGTTG 59.796 57.143 5.39 0.00 41.28 4.10
2626 2920 0.893447 AGTACTAGTGGACCCGTTGC 59.107 55.000 5.39 0.00 0.00 4.17
2627 2921 0.457337 GTACTAGTGGACCCGTTGCG 60.457 60.000 5.39 0.00 0.00 4.85
2628 2922 0.895100 TACTAGTGGACCCGTTGCGT 60.895 55.000 5.39 0.00 0.00 5.24
2629 2923 1.445582 CTAGTGGACCCGTTGCGTC 60.446 63.158 0.00 0.00 0.00 5.19
2630 2924 2.149803 CTAGTGGACCCGTTGCGTCA 62.150 60.000 0.00 0.00 31.55 4.35
2631 2925 1.746322 TAGTGGACCCGTTGCGTCAA 61.746 55.000 0.00 0.00 31.55 3.18
2632 2926 2.181521 GTGGACCCGTTGCGTCAAA 61.182 57.895 0.00 0.00 31.55 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 179 6.359883 GTGCGGAATCTTTTTCTACTTGAAAC 59.640 38.462 0.00 0.00 43.55 2.78
163 188 2.178912 TCCGTGCGGAATCTTTTTCT 57.821 45.000 11.22 0.00 42.05 2.52
175 200 2.051804 GATGCCAATCCTTCCGTGCG 62.052 60.000 0.00 0.00 0.00 5.34
312 337 2.499693 TGGTTTACTGCAGATCGGATCA 59.500 45.455 23.35 5.00 0.00 2.92
367 393 4.983671 ATCAGCACACGATGACTAGTAA 57.016 40.909 0.00 0.00 41.11 2.24
368 394 4.672409 CAATCAGCACACGATGACTAGTA 58.328 43.478 0.00 0.00 41.11 1.82
369 395 3.515630 CAATCAGCACACGATGACTAGT 58.484 45.455 0.00 0.00 41.11 2.57
438 468 0.179029 CGGGTTGTGTCCCTTCTGTT 60.179 55.000 0.25 0.00 44.95 3.16
444 478 2.928396 CCTCCGGGTTGTGTCCCT 60.928 66.667 0.00 0.00 44.95 4.20
541 629 1.587613 GGCTCAGCAGACGACGATC 60.588 63.158 0.00 0.00 0.00 3.69
583 671 3.371097 GAGGTGCAGCGATCCGGAA 62.371 63.158 9.01 0.00 0.00 4.30
628 716 1.153329 TCGGAGCACAAACAACGGT 60.153 52.632 0.00 0.00 0.00 4.83
638 726 1.135139 TGCAGAGATAACTCGGAGCAC 59.865 52.381 4.58 0.00 46.64 4.40
782 999 1.052617 TGACCACATCAGTTTCCGGA 58.947 50.000 0.00 0.00 31.91 5.14
994 1238 3.873026 GATCCGGCCTCATGGAGCG 62.873 68.421 0.00 0.00 37.76 5.03
995 1239 2.031768 GATCCGGCCTCATGGAGC 59.968 66.667 0.00 0.00 37.76 4.70
996 1240 2.746359 GGATCCGGCCTCATGGAG 59.254 66.667 0.00 0.00 37.76 3.86
997 1241 2.849162 GGGATCCGGCCTCATGGA 60.849 66.667 5.45 0.00 38.95 3.41
998 1242 4.320456 CGGGATCCGGCCTCATGG 62.320 72.222 5.45 0.00 44.15 3.66
1008 1252 2.750350 CATGTAGGGGCGGGATCC 59.250 66.667 1.92 1.92 0.00 3.36
1009 1253 2.032681 GCATGTAGGGGCGGGATC 59.967 66.667 0.00 0.00 0.00 3.36
1010 1254 3.570212 GGCATGTAGGGGCGGGAT 61.570 66.667 0.00 0.00 0.00 3.85
1016 1260 4.181010 AGCAGCGGCATGTAGGGG 62.181 66.667 12.44 0.00 44.61 4.79
1017 1261 2.590007 GAGCAGCGGCATGTAGGG 60.590 66.667 12.44 0.00 44.61 3.53
1018 1262 1.886313 CTGAGCAGCGGCATGTAGG 60.886 63.158 12.44 0.00 44.61 3.18
1019 1263 3.715273 CTGAGCAGCGGCATGTAG 58.285 61.111 12.44 0.00 44.61 2.74
1029 1273 2.433838 CGAGGTGGTGCTGAGCAG 60.434 66.667 7.71 0.00 40.08 4.24
1030 1274 4.687215 GCGAGGTGGTGCTGAGCA 62.687 66.667 1.40 1.40 35.60 4.26
1037 1281 4.988598 AGGTTGCGCGAGGTGGTG 62.989 66.667 12.10 0.00 0.00 4.17
1038 1282 4.681978 GAGGTTGCGCGAGGTGGT 62.682 66.667 12.10 0.00 0.00 4.16
1041 1285 4.719369 GACGAGGTTGCGCGAGGT 62.719 66.667 12.10 0.00 33.86 3.85
1042 1286 4.717629 TGACGAGGTTGCGCGAGG 62.718 66.667 12.10 0.00 33.86 4.63
1043 1287 3.175240 CTGACGAGGTTGCGCGAG 61.175 66.667 12.10 0.00 33.86 5.03
1047 1291 2.664851 TTGGCTGACGAGGTTGCG 60.665 61.111 0.00 0.00 37.29 4.85
1048 1292 1.598130 ACTTGGCTGACGAGGTTGC 60.598 57.895 2.15 0.00 34.66 4.17
1049 1293 1.845809 GCACTTGGCTGACGAGGTTG 61.846 60.000 2.15 0.00 40.25 3.77
1050 1294 1.598130 GCACTTGGCTGACGAGGTT 60.598 57.895 2.15 0.00 40.25 3.50
1051 1295 2.031163 GCACTTGGCTGACGAGGT 59.969 61.111 2.15 0.00 40.25 3.85
1060 1304 2.436115 GTCCCCGTAGCACTTGGC 60.436 66.667 0.00 0.00 45.30 4.52
1061 1305 1.079127 CTGTCCCCGTAGCACTTGG 60.079 63.158 0.00 0.00 0.00 3.61
1062 1306 1.079127 CCTGTCCCCGTAGCACTTG 60.079 63.158 0.00 0.00 0.00 3.16
1063 1307 1.125711 AACCTGTCCCCGTAGCACTT 61.126 55.000 0.00 0.00 0.00 3.16
1064 1308 1.535687 AACCTGTCCCCGTAGCACT 60.536 57.895 0.00 0.00 0.00 4.40
1065 1309 1.079336 GAACCTGTCCCCGTAGCAC 60.079 63.158 0.00 0.00 0.00 4.40
1066 1310 0.907704 ATGAACCTGTCCCCGTAGCA 60.908 55.000 0.00 0.00 0.00 3.49
1067 1311 0.179081 GATGAACCTGTCCCCGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
1068 1312 0.464452 GGATGAACCTGTCCCCGTAG 59.536 60.000 0.00 0.00 35.41 3.51
1069 1313 0.979187 GGGATGAACCTGTCCCCGTA 60.979 60.000 0.00 0.00 46.95 4.02
1070 1314 2.298661 GGGATGAACCTGTCCCCGT 61.299 63.158 0.00 0.00 46.95 5.28
1071 1315 2.590092 GGGATGAACCTGTCCCCG 59.410 66.667 0.00 0.00 46.95 5.73
1074 1318 1.221021 GTCCGGGATGAACCTGTCC 59.779 63.158 0.00 0.00 43.20 4.02
1075 1319 1.221021 GGTCCGGGATGAACCTGTC 59.779 63.158 0.00 0.00 43.20 3.51
1076 1320 2.656069 CGGTCCGGGATGAACCTGT 61.656 63.158 2.34 0.00 43.20 4.00
1077 1321 2.186903 CGGTCCGGGATGAACCTG 59.813 66.667 2.34 0.00 44.27 4.00
1078 1322 3.081409 CCGGTCCGGGATGAACCT 61.081 66.667 23.59 0.00 44.15 3.50
1088 1332 4.873129 CCATCGCTGACCGGTCCG 62.873 72.222 31.19 26.44 37.59 4.79
1089 1333 3.458163 TCCATCGCTGACCGGTCC 61.458 66.667 31.19 16.07 37.59 4.46
1090 1334 2.202756 GTCCATCGCTGACCGGTC 60.203 66.667 28.17 28.17 37.59 4.79
1091 1335 2.359169 ATGTCCATCGCTGACCGGT 61.359 57.895 6.92 6.92 37.59 5.28
1092 1336 1.884464 CATGTCCATCGCTGACCGG 60.884 63.158 0.00 0.00 37.59 5.28
1093 1337 1.884464 CCATGTCCATCGCTGACCG 60.884 63.158 0.00 0.00 38.61 4.79
1094 1338 0.811616 GTCCATGTCCATCGCTGACC 60.812 60.000 0.00 0.00 31.60 4.02
1095 1339 0.108186 TGTCCATGTCCATCGCTGAC 60.108 55.000 0.00 0.00 0.00 3.51
1096 1340 0.832626 ATGTCCATGTCCATCGCTGA 59.167 50.000 0.00 0.00 0.00 4.26
1097 1341 0.942252 CATGTCCATGTCCATCGCTG 59.058 55.000 0.00 0.00 34.23 5.18
1098 1342 0.179037 CCATGTCCATGTCCATCGCT 60.179 55.000 6.53 0.00 37.11 4.93
1099 1343 1.789078 GCCATGTCCATGTCCATCGC 61.789 60.000 6.53 0.00 37.11 4.58
1100 1344 1.501337 CGCCATGTCCATGTCCATCG 61.501 60.000 6.53 0.00 37.11 3.84
1101 1345 1.789078 GCGCCATGTCCATGTCCATC 61.789 60.000 0.00 0.00 37.11 3.51
1102 1346 1.825191 GCGCCATGTCCATGTCCAT 60.825 57.895 0.00 0.00 37.11 3.41
1103 1347 2.438254 GCGCCATGTCCATGTCCA 60.438 61.111 0.00 0.00 37.11 4.02
1104 1348 2.438254 TGCGCCATGTCCATGTCC 60.438 61.111 4.18 0.00 37.11 4.02
1105 1349 0.461870 TAGTGCGCCATGTCCATGTC 60.462 55.000 4.18 0.00 37.11 3.06
1106 1350 0.744414 GTAGTGCGCCATGTCCATGT 60.744 55.000 4.18 0.00 37.11 3.21
1107 1351 1.439353 GGTAGTGCGCCATGTCCATG 61.439 60.000 4.18 0.14 38.51 3.66
1108 1352 1.153168 GGTAGTGCGCCATGTCCAT 60.153 57.895 4.18 0.00 0.00 3.41
1109 1353 2.267642 GGTAGTGCGCCATGTCCA 59.732 61.111 4.18 0.00 0.00 4.02
1110 1354 1.815421 CAGGTAGTGCGCCATGTCC 60.815 63.158 4.18 0.85 0.00 4.02
1111 1355 2.464459 GCAGGTAGTGCGCCATGTC 61.464 63.158 4.18 0.00 43.99 3.06
1112 1356 2.436646 GCAGGTAGTGCGCCATGT 60.437 61.111 4.18 0.00 43.99 3.21
1120 1364 0.171455 GTCTCCGTGAGCAGGTAGTG 59.829 60.000 0.00 0.00 0.00 2.74
1121 1365 0.966370 GGTCTCCGTGAGCAGGTAGT 60.966 60.000 0.00 0.00 42.34 2.73
1122 1366 0.965866 TGGTCTCCGTGAGCAGGTAG 60.966 60.000 3.89 0.00 46.77 3.18
1123 1367 1.076014 TGGTCTCCGTGAGCAGGTA 59.924 57.895 3.89 0.00 46.77 3.08
1124 1368 2.203640 TGGTCTCCGTGAGCAGGT 60.204 61.111 3.89 0.00 46.77 4.00
1128 1372 0.390472 CCTTCTTGGTCTCCGTGAGC 60.390 60.000 0.00 0.00 43.03 4.26
1129 1373 1.067495 GTCCTTCTTGGTCTCCGTGAG 60.067 57.143 0.00 0.00 37.07 3.51
1130 1374 0.966920 GTCCTTCTTGGTCTCCGTGA 59.033 55.000 0.00 0.00 37.07 4.35
1131 1375 0.679505 TGTCCTTCTTGGTCTCCGTG 59.320 55.000 0.00 0.00 37.07 4.94
1132 1376 1.344763 CTTGTCCTTCTTGGTCTCCGT 59.655 52.381 0.00 0.00 37.07 4.69
1133 1377 1.338200 CCTTGTCCTTCTTGGTCTCCG 60.338 57.143 0.00 0.00 37.07 4.63
1134 1378 1.978580 TCCTTGTCCTTCTTGGTCTCC 59.021 52.381 0.00 0.00 37.07 3.71
1135 1379 2.900546 TCTCCTTGTCCTTCTTGGTCTC 59.099 50.000 0.00 0.00 37.07 3.36
1136 1380 2.977808 TCTCCTTGTCCTTCTTGGTCT 58.022 47.619 0.00 0.00 37.07 3.85
1137 1381 3.403968 GTTCTCCTTGTCCTTCTTGGTC 58.596 50.000 0.00 0.00 37.07 4.02
1138 1382 2.224305 CGTTCTCCTTGTCCTTCTTGGT 60.224 50.000 0.00 0.00 37.07 3.67
1139 1383 2.417719 CGTTCTCCTTGTCCTTCTTGG 58.582 52.381 0.00 0.00 37.10 3.61
1140 1384 1.801178 GCGTTCTCCTTGTCCTTCTTG 59.199 52.381 0.00 0.00 0.00 3.02
1141 1385 1.605712 CGCGTTCTCCTTGTCCTTCTT 60.606 52.381 0.00 0.00 0.00 2.52
1142 1386 0.038159 CGCGTTCTCCTTGTCCTTCT 60.038 55.000 0.00 0.00 0.00 2.85
1143 1387 1.014564 CCGCGTTCTCCTTGTCCTTC 61.015 60.000 4.92 0.00 0.00 3.46
1144 1388 1.004918 CCGCGTTCTCCTTGTCCTT 60.005 57.895 4.92 0.00 0.00 3.36
1145 1389 2.657237 CCGCGTTCTCCTTGTCCT 59.343 61.111 4.92 0.00 0.00 3.85
1146 1390 3.119096 GCCGCGTTCTCCTTGTCC 61.119 66.667 4.92 0.00 0.00 4.02
1147 1391 3.479269 CGCCGCGTTCTCCTTGTC 61.479 66.667 4.92 0.00 0.00 3.18
1174 1418 3.787001 CTCCTTGGAGGGGGACGC 61.787 72.222 8.74 0.00 43.76 5.19
1180 1424 2.732619 GGTACGCCTCCTTGGAGGG 61.733 68.421 30.42 23.26 42.50 4.30
1181 1425 2.901042 GGTACGCCTCCTTGGAGG 59.099 66.667 26.93 26.93 44.98 4.30
1194 1438 2.104530 GCGAGAAGCCTCCGGTAC 59.895 66.667 0.00 0.00 40.81 3.34
1195 1439 3.515286 CGCGAGAAGCCTCCGGTA 61.515 66.667 0.00 0.00 44.76 4.02
1198 1442 4.560856 CTCCGCGAGAAGCCTCCG 62.561 72.222 8.23 0.00 44.76 4.63
1199 1443 2.711922 TTCTCCGCGAGAAGCCTCC 61.712 63.158 8.23 0.00 42.78 4.30
1200 1444 2.885861 TTCTCCGCGAGAAGCCTC 59.114 61.111 8.23 0.00 42.78 4.70
1205 1449 2.125912 GCAGCTTCTCCGCGAGAA 60.126 61.111 8.23 13.87 45.01 2.87
1206 1450 3.057547 GAGCAGCTTCTCCGCGAGA 62.058 63.158 8.23 5.85 36.86 4.04
1207 1451 2.581953 GAGCAGCTTCTCCGCGAG 60.582 66.667 8.23 3.02 34.40 5.03
1208 1452 2.931068 TTGAGCAGCTTCTCCGCGA 61.931 57.895 8.23 0.00 34.40 5.87
1209 1453 2.433145 TTGAGCAGCTTCTCCGCG 60.433 61.111 11.01 0.00 34.40 6.46
1210 1454 1.230635 TTGTTGAGCAGCTTCTCCGC 61.231 55.000 11.01 4.35 32.22 5.54
1211 1455 0.514691 GTTGTTGAGCAGCTTCTCCG 59.485 55.000 11.01 0.00 32.22 4.63
1212 1456 0.877743 GGTTGTTGAGCAGCTTCTCC 59.122 55.000 11.01 0.00 32.22 3.71
1213 1457 0.514691 CGGTTGTTGAGCAGCTTCTC 59.485 55.000 6.41 6.41 0.00 2.87
1214 1458 0.886490 CCGGTTGTTGAGCAGCTTCT 60.886 55.000 0.00 0.00 0.00 2.85
1215 1459 0.884704 TCCGGTTGTTGAGCAGCTTC 60.885 55.000 0.00 0.00 0.00 3.86
1216 1460 1.148273 TCCGGTTGTTGAGCAGCTT 59.852 52.632 0.00 0.00 0.00 3.74
1217 1461 1.598130 GTCCGGTTGTTGAGCAGCT 60.598 57.895 0.00 0.00 0.00 4.24
1218 1462 2.946762 GTCCGGTTGTTGAGCAGC 59.053 61.111 0.00 0.00 0.00 5.25
1219 1463 2.954753 GCGTCCGGTTGTTGAGCAG 61.955 63.158 0.00 0.00 0.00 4.24
1220 1464 2.970324 GCGTCCGGTTGTTGAGCA 60.970 61.111 0.00 0.00 0.00 4.26
1221 1465 4.072088 CGCGTCCGGTTGTTGAGC 62.072 66.667 0.00 0.00 0.00 4.26
1237 1481 3.610669 CCTGAGGGCGAGGATCCG 61.611 72.222 5.98 0.00 31.48 4.18
1238 1482 1.762460 TTCCTGAGGGCGAGGATCC 60.762 63.158 2.48 2.48 39.44 3.36
1239 1483 1.330655 TGTTCCTGAGGGCGAGGATC 61.331 60.000 0.00 0.00 39.44 3.36
1240 1484 0.909610 TTGTTCCTGAGGGCGAGGAT 60.910 55.000 0.00 0.00 39.44 3.24
1241 1485 1.535444 TTGTTCCTGAGGGCGAGGA 60.535 57.895 0.00 0.00 37.87 3.71
1242 1486 1.078848 CTTGTTCCTGAGGGCGAGG 60.079 63.158 0.00 0.00 0.00 4.63
1243 1487 1.743252 GCTTGTTCCTGAGGGCGAG 60.743 63.158 0.00 2.81 0.00 5.03
1244 1488 2.347490 GCTTGTTCCTGAGGGCGA 59.653 61.111 0.00 0.00 0.00 5.54
1245 1489 2.747855 GGCTTGTTCCTGAGGGCG 60.748 66.667 0.00 0.00 0.00 6.13
1246 1490 2.747855 CGGCTTGTTCCTGAGGGC 60.748 66.667 0.00 0.00 0.00 5.19
1247 1491 2.747855 GCGGCTTGTTCCTGAGGG 60.748 66.667 0.00 0.00 0.00 4.30
1248 1492 2.747855 GGCGGCTTGTTCCTGAGG 60.748 66.667 0.00 0.00 0.00 3.86
1249 1493 3.121030 CGGCGGCTTGTTCCTGAG 61.121 66.667 7.61 0.00 0.00 3.35
1250 1494 4.697756 CCGGCGGCTTGTTCCTGA 62.698 66.667 15.42 0.00 0.00 3.86
1251 1495 4.697756 TCCGGCGGCTTGTTCCTG 62.698 66.667 23.83 0.00 0.00 3.86
1252 1496 4.394712 CTCCGGCGGCTTGTTCCT 62.395 66.667 23.83 0.00 0.00 3.36
1265 1509 0.528684 GAAGATGTTCTCCGGCTCCG 60.529 60.000 0.00 0.48 39.44 4.63
1266 1510 0.528684 CGAAGATGTTCTCCGGCTCC 60.529 60.000 0.00 0.00 0.00 4.70
1267 1511 1.148759 GCGAAGATGTTCTCCGGCTC 61.149 60.000 0.00 0.00 0.00 4.70
1268 1512 1.153549 GCGAAGATGTTCTCCGGCT 60.154 57.895 0.00 0.00 0.00 5.52
1269 1513 1.153549 AGCGAAGATGTTCTCCGGC 60.154 57.895 0.00 0.00 0.00 6.13
1270 1514 2.670635 CAGCGAAGATGTTCTCCGG 58.329 57.895 0.00 0.00 40.13 5.14
1279 1523 1.446792 CTGTGTCGGCAGCGAAGAT 60.447 57.895 0.00 0.00 0.00 2.40
1280 1524 2.049156 CTGTGTCGGCAGCGAAGA 60.049 61.111 0.00 0.00 0.00 2.87
1281 1525 3.114616 CCTGTGTCGGCAGCGAAG 61.115 66.667 0.00 0.00 35.28 3.79
1282 1526 2.933878 AAACCTGTGTCGGCAGCGAA 62.934 55.000 0.00 0.00 35.28 4.70
1283 1527 3.454587 AAACCTGTGTCGGCAGCGA 62.455 57.895 0.00 0.00 35.28 4.93
1284 1528 2.954753 GAAACCTGTGTCGGCAGCG 61.955 63.158 0.00 0.00 35.28 5.18
1285 1529 1.166531 AAGAAACCTGTGTCGGCAGC 61.167 55.000 0.00 0.00 35.28 5.25
1286 1530 0.868406 GAAGAAACCTGTGTCGGCAG 59.132 55.000 0.00 0.00 36.31 4.85
1287 1531 0.468226 AGAAGAAACCTGTGTCGGCA 59.532 50.000 0.00 0.00 0.00 5.69
1288 1532 1.149148 GAGAAGAAACCTGTGTCGGC 58.851 55.000 0.00 0.00 0.00 5.54
1289 1533 2.135933 GTGAGAAGAAACCTGTGTCGG 58.864 52.381 0.00 0.00 0.00 4.79
1290 1534 2.135933 GGTGAGAAGAAACCTGTGTCG 58.864 52.381 0.00 0.00 33.40 4.35
1291 1535 3.134458 CTGGTGAGAAGAAACCTGTGTC 58.866 50.000 0.00 0.00 37.36 3.67
1292 1536 2.158755 CCTGGTGAGAAGAAACCTGTGT 60.159 50.000 0.00 0.00 37.36 3.72
1293 1537 2.498167 CCTGGTGAGAAGAAACCTGTG 58.502 52.381 0.00 0.00 37.36 3.66
1294 1538 1.202818 GCCTGGTGAGAAGAAACCTGT 60.203 52.381 0.00 0.00 37.36 4.00
1295 1539 1.528129 GCCTGGTGAGAAGAAACCTG 58.472 55.000 0.00 0.00 37.36 4.00
1296 1540 0.402121 GGCCTGGTGAGAAGAAACCT 59.598 55.000 0.00 0.00 37.36 3.50
1297 1541 0.110486 TGGCCTGGTGAGAAGAAACC 59.890 55.000 3.32 0.00 36.96 3.27
1298 1542 1.882623 CTTGGCCTGGTGAGAAGAAAC 59.117 52.381 3.32 0.00 0.00 2.78
1299 1543 1.819305 GCTTGGCCTGGTGAGAAGAAA 60.819 52.381 3.32 0.00 0.00 2.52
1300 1544 0.250901 GCTTGGCCTGGTGAGAAGAA 60.251 55.000 3.32 0.00 0.00 2.52
1301 1545 1.376466 GCTTGGCCTGGTGAGAAGA 59.624 57.895 3.32 0.00 0.00 2.87
1302 1546 1.676967 GGCTTGGCCTGGTGAGAAG 60.677 63.158 3.32 0.00 46.69 2.85
1303 1547 2.436109 GGCTTGGCCTGGTGAGAA 59.564 61.111 3.32 0.00 46.69 2.87
1315 1559 3.437795 CTCTGCTTGGCCGGCTTG 61.438 66.667 28.56 17.27 0.00 4.01
1316 1560 4.729918 CCTCTGCTTGGCCGGCTT 62.730 66.667 28.56 0.00 0.00 4.35
1321 1565 4.473520 TAGCGCCTCTGCTTGGCC 62.474 66.667 2.29 0.00 44.46 5.36
1322 1566 3.198489 GTAGCGCCTCTGCTTGGC 61.198 66.667 2.29 5.35 44.46 4.52
1323 1567 0.745845 AATGTAGCGCCTCTGCTTGG 60.746 55.000 2.29 0.00 44.46 3.61
1324 1568 0.654683 GAATGTAGCGCCTCTGCTTG 59.345 55.000 2.29 0.00 44.46 4.01
1325 1569 0.462759 GGAATGTAGCGCCTCTGCTT 60.463 55.000 2.29 0.00 44.46 3.91
1327 1571 1.889573 GGGAATGTAGCGCCTCTGC 60.890 63.158 2.29 0.00 0.00 4.26
1328 1572 1.227674 GGGGAATGTAGCGCCTCTG 60.228 63.158 2.29 0.00 35.64 3.35
1329 1573 1.689233 TGGGGAATGTAGCGCCTCT 60.689 57.895 2.29 0.00 38.98 3.69
1330 1574 1.227674 CTGGGGAATGTAGCGCCTC 60.228 63.158 2.29 0.00 38.98 4.70
1331 1575 1.972660 GACTGGGGAATGTAGCGCCT 61.973 60.000 2.29 0.00 38.98 5.52
1332 1576 1.523938 GACTGGGGAATGTAGCGCC 60.524 63.158 2.29 0.00 38.71 6.53
1333 1577 0.811616 CAGACTGGGGAATGTAGCGC 60.812 60.000 0.00 0.00 0.00 5.92
1334 1578 0.811616 GCAGACTGGGGAATGTAGCG 60.812 60.000 4.26 0.00 0.00 4.26
1335 1579 0.464554 GGCAGACTGGGGAATGTAGC 60.465 60.000 4.26 0.00 0.00 3.58
1336 1580 0.179073 CGGCAGACTGGGGAATGTAG 60.179 60.000 4.26 0.00 0.00 2.74
1337 1581 0.616395 TCGGCAGACTGGGGAATGTA 60.616 55.000 4.26 0.00 0.00 2.29
1338 1582 1.903877 CTCGGCAGACTGGGGAATGT 61.904 60.000 4.26 0.00 0.00 2.71
1339 1583 1.153289 CTCGGCAGACTGGGGAATG 60.153 63.158 4.26 0.00 0.00 2.67
1340 1584 1.306141 TCTCGGCAGACTGGGGAAT 60.306 57.895 4.26 0.00 0.00 3.01
1341 1585 1.984570 CTCTCGGCAGACTGGGGAA 60.985 63.158 4.26 0.00 0.00 3.97
1342 1586 2.363018 CTCTCGGCAGACTGGGGA 60.363 66.667 4.26 0.00 0.00 4.81
1343 1587 3.465403 CCTCTCGGCAGACTGGGG 61.465 72.222 4.26 0.00 0.00 4.96
1344 1588 2.363018 TCCTCTCGGCAGACTGGG 60.363 66.667 4.26 0.00 0.00 4.45
1345 1589 1.662438 GAGTCCTCTCGGCAGACTGG 61.662 65.000 4.26 0.00 40.87 4.00
1346 1590 0.679640 AGAGTCCTCTCGGCAGACTG 60.680 60.000 0.00 0.00 44.65 3.51
1347 1591 0.679640 CAGAGTCCTCTCGGCAGACT 60.680 60.000 0.00 0.00 44.65 3.24
1348 1592 1.662438 CCAGAGTCCTCTCGGCAGAC 61.662 65.000 0.00 0.00 44.65 3.51
1349 1593 1.379176 CCAGAGTCCTCTCGGCAGA 60.379 63.158 0.00 0.00 44.65 4.26
1350 1594 0.754957 ATCCAGAGTCCTCTCGGCAG 60.755 60.000 0.00 0.00 44.65 4.85
1351 1595 1.039785 CATCCAGAGTCCTCTCGGCA 61.040 60.000 0.00 0.00 44.65 5.69
1352 1596 1.739049 CATCCAGAGTCCTCTCGGC 59.261 63.158 0.00 0.00 44.65 5.54
1353 1597 1.039785 TGCATCCAGAGTCCTCTCGG 61.040 60.000 0.00 0.84 44.65 4.63
1354 1598 0.102120 GTGCATCCAGAGTCCTCTCG 59.898 60.000 0.00 0.00 44.65 4.04
1355 1599 0.463620 GGTGCATCCAGAGTCCTCTC 59.536 60.000 0.00 0.00 37.98 3.20
1356 1600 1.326213 CGGTGCATCCAGAGTCCTCT 61.326 60.000 0.00 0.00 41.37 3.69
1357 1601 1.142748 CGGTGCATCCAGAGTCCTC 59.857 63.158 0.00 0.00 35.57 3.71
1358 1602 2.362369 CCGGTGCATCCAGAGTCCT 61.362 63.158 0.00 0.00 35.57 3.85
1359 1603 2.187946 CCGGTGCATCCAGAGTCC 59.812 66.667 0.00 0.00 35.57 3.85
1360 1604 1.153549 GTCCGGTGCATCCAGAGTC 60.154 63.158 0.00 0.00 35.57 3.36
1361 1605 2.660064 GGTCCGGTGCATCCAGAGT 61.660 63.158 0.00 0.00 35.57 3.24
1362 1606 2.187946 GGTCCGGTGCATCCAGAG 59.812 66.667 0.00 0.00 35.57 3.35
1363 1607 2.284625 AGGTCCGGTGCATCCAGA 60.285 61.111 0.00 0.00 35.57 3.86
1364 1608 2.187946 GAGGTCCGGTGCATCCAG 59.812 66.667 0.00 0.00 35.57 3.86
1365 1609 3.770040 CGAGGTCCGGTGCATCCA 61.770 66.667 0.00 0.00 35.57 3.41
1366 1610 3.718210 GACGAGGTCCGGTGCATCC 62.718 68.421 0.00 0.00 43.93 3.51
1367 1611 2.202756 GACGAGGTCCGGTGCATC 60.203 66.667 0.00 2.13 43.93 3.91
1368 1612 4.129737 CGACGAGGTCCGGTGCAT 62.130 66.667 0.00 0.00 43.93 3.96
1370 1614 4.773117 GTCGACGAGGTCCGGTGC 62.773 72.222 0.00 0.00 43.93 5.01
1371 1615 4.456253 CGTCGACGAGGTCCGGTG 62.456 72.222 33.35 0.00 43.93 4.94
1372 1616 4.687215 TCGTCGACGAGGTCCGGT 62.687 66.667 34.97 0.00 44.22 5.28
1381 1625 1.633561 TGAGGTAGTAGTCGTCGACG 58.366 55.000 31.30 31.30 37.67 5.12
1382 1626 2.095053 GGTTGAGGTAGTAGTCGTCGAC 59.905 54.545 17.70 17.70 34.97 4.20
1383 1627 2.027745 AGGTTGAGGTAGTAGTCGTCGA 60.028 50.000 0.00 0.00 0.00 4.20
1384 1628 2.095532 CAGGTTGAGGTAGTAGTCGTCG 59.904 54.545 0.00 0.00 0.00 5.12
1385 1629 3.341823 TCAGGTTGAGGTAGTAGTCGTC 58.658 50.000 0.00 0.00 0.00 4.20
1386 1630 3.430042 TCAGGTTGAGGTAGTAGTCGT 57.570 47.619 0.00 0.00 0.00 4.34
1387 1631 3.066900 CCATCAGGTTGAGGTAGTAGTCG 59.933 52.174 0.00 0.00 0.00 4.18
1388 1632 4.098196 GTCCATCAGGTTGAGGTAGTAGTC 59.902 50.000 0.00 0.00 35.89 2.59
1389 1633 4.024670 GTCCATCAGGTTGAGGTAGTAGT 58.975 47.826 0.00 0.00 35.89 2.73
1390 1634 4.098654 CAGTCCATCAGGTTGAGGTAGTAG 59.901 50.000 0.00 0.00 35.89 2.57
1391 1635 4.023980 CAGTCCATCAGGTTGAGGTAGTA 58.976 47.826 0.00 0.00 35.89 1.82
1392 1636 2.834549 CAGTCCATCAGGTTGAGGTAGT 59.165 50.000 0.00 0.00 35.89 2.73
1393 1637 2.169352 CCAGTCCATCAGGTTGAGGTAG 59.831 54.545 0.00 0.00 35.89 3.18
1394 1638 2.187958 CCAGTCCATCAGGTTGAGGTA 58.812 52.381 0.00 0.00 35.89 3.08
1395 1639 0.987294 CCAGTCCATCAGGTTGAGGT 59.013 55.000 0.00 0.00 35.89 3.85
1396 1640 0.254178 CCCAGTCCATCAGGTTGAGG 59.746 60.000 0.00 0.00 35.89 3.86
1397 1641 0.254178 CCCCAGTCCATCAGGTTGAG 59.746 60.000 0.00 0.00 35.89 3.02
1398 1642 1.207488 CCCCCAGTCCATCAGGTTGA 61.207 60.000 0.00 0.00 35.89 3.18
1399 1643 1.207488 TCCCCCAGTCCATCAGGTTG 61.207 60.000 0.00 0.00 35.89 3.77
1400 1644 0.916358 CTCCCCCAGTCCATCAGGTT 60.916 60.000 0.00 0.00 35.89 3.50
1401 1645 1.307343 CTCCCCCAGTCCATCAGGT 60.307 63.158 0.00 0.00 35.89 4.00
1402 1646 2.750657 GCTCCCCCAGTCCATCAGG 61.751 68.421 0.00 0.00 0.00 3.86
1403 1647 1.277580 AAGCTCCCCCAGTCCATCAG 61.278 60.000 0.00 0.00 0.00 2.90
1404 1648 1.229951 AAGCTCCCCCAGTCCATCA 60.230 57.895 0.00 0.00 0.00 3.07
1405 1649 1.225704 CAAGCTCCCCCAGTCCATC 59.774 63.158 0.00 0.00 0.00 3.51
1406 1650 2.988839 GCAAGCTCCCCCAGTCCAT 61.989 63.158 0.00 0.00 0.00 3.41
1407 1651 3.650950 GCAAGCTCCCCCAGTCCA 61.651 66.667 0.00 0.00 0.00 4.02
1408 1652 4.785453 CGCAAGCTCCCCCAGTCC 62.785 72.222 0.00 0.00 0.00 3.85
1594 1838 2.825836 GGGAATGGCCACTCGCTG 60.826 66.667 22.59 0.00 38.95 5.18
1667 1911 2.049156 TCAGTGAGCTTCGGTGCG 60.049 61.111 0.00 0.00 38.13 5.34
1668 1912 2.029844 GGTCAGTGAGCTTCGGTGC 61.030 63.158 15.08 0.00 0.00 5.01
1673 1917 0.321122 CTGGTGGGTCAGTGAGCTTC 60.321 60.000 20.97 13.74 0.00 3.86
1703 1947 1.835693 GGCAGGCTCTAGCAAGGAT 59.164 57.895 4.07 0.00 44.36 3.24
1704 1948 2.725312 CGGCAGGCTCTAGCAAGGA 61.725 63.158 4.07 0.00 44.36 3.36
1705 1949 2.202987 CGGCAGGCTCTAGCAAGG 60.203 66.667 4.07 0.00 44.36 3.61
1706 1950 2.894387 GCGGCAGGCTCTAGCAAG 60.894 66.667 4.07 0.00 44.36 4.01
1810 2054 0.310854 CGGCTTGGTTGTTTGAGGAC 59.689 55.000 0.00 0.00 0.00 3.85
1862 2106 2.741985 CGACTTGGCATGCGTCCA 60.742 61.111 12.44 0.61 0.00 4.02
1878 2122 2.813179 GCGAGTTATGGCAGTGGCG 61.813 63.158 12.58 0.00 42.47 5.69
1886 2130 1.227674 GGCTCTGGGCGAGTTATGG 60.228 63.158 0.00 0.00 41.98 2.74
1905 2149 0.391597 TGACTCCACGGAAACTGGTC 59.608 55.000 0.00 0.00 32.49 4.02
1944 2188 4.034258 CCGGCAGCACAGCAGTTG 62.034 66.667 0.00 0.00 35.83 3.16
1945 2189 4.569180 ACCGGCAGCACAGCAGTT 62.569 61.111 0.00 0.00 35.83 3.16
1946 2190 4.569180 AACCGGCAGCACAGCAGT 62.569 61.111 0.00 0.00 35.83 4.40
2222 2467 1.078143 GAACTTGGAGGCATCGGCT 60.078 57.895 0.00 0.00 42.48 5.52
2262 2511 1.967597 GACCGGCTTAAAGCAGCGTC 61.968 60.000 0.00 0.00 44.75 5.19
2289 2538 1.638133 CAGCAGTGGATTCAGACGAG 58.362 55.000 0.00 0.00 0.00 4.18
2369 2618 2.478746 GTGCAATACCGTGGCGTG 59.521 61.111 0.00 0.00 0.00 5.34
2385 2652 0.389391 CTCTGGTGACTTGACGTGGT 59.611 55.000 0.00 0.00 0.00 4.16
2470 2746 0.727398 GCGTGGCTGTTATTCTGTCC 59.273 55.000 0.00 0.00 0.00 4.02
2521 2815 4.083110 ACGTGAGATGCTTTGGAAAATCAG 60.083 41.667 0.00 0.00 0.00 2.90
2572 2866 6.206243 GGACTAGTATAGCCTCACGTCATTTA 59.794 42.308 0.00 0.00 44.39 1.40
2611 2905 1.445582 GACGCAACGGGTCCACTAG 60.446 63.158 0.00 0.00 39.17 2.57
2612 2906 1.746322 TTGACGCAACGGGTCCACTA 61.746 55.000 8.49 0.00 43.42 2.74
2613 2907 2.596553 TTTGACGCAACGGGTCCACT 62.597 55.000 8.49 0.00 43.42 4.00
2614 2908 2.181521 TTTGACGCAACGGGTCCAC 61.182 57.895 8.49 0.00 43.42 4.02
2615 2909 2.189784 TTTGACGCAACGGGTCCA 59.810 55.556 8.49 0.00 43.42 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.