Multiple sequence alignment - TraesCS2D01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G118300 chr2D 100.000 4358 0 0 1 4358 67556238 67551881 0.000000e+00 8048
1 TraesCS2D01G118300 chr2A 93.167 1800 72 11 1799 3564 66807506 66809288 0.000000e+00 2595
2 TraesCS2D01G118300 chr2A 89.906 1060 66 18 720 1773 66806483 66807507 0.000000e+00 1327
3 TraesCS2D01G118300 chr2A 89.883 514 35 4 3549 4061 66809302 66809799 0.000000e+00 645
4 TraesCS2D01G118300 chr2A 93.005 386 22 3 1 384 66805061 66805443 3.810000e-155 558
5 TraesCS2D01G118300 chr2B 92.344 1685 79 14 761 2419 102980074 102981734 0.000000e+00 2351
6 TraesCS2D01G118300 chr2B 93.543 1115 42 11 2460 3564 102981746 102982840 0.000000e+00 1633
7 TraesCS2D01G118300 chr2B 87.426 509 29 15 3549 4057 102982854 102983327 1.770000e-153 553
8 TraesCS2D01G118300 chr2B 93.697 238 14 1 1 237 102977614 102977851 5.360000e-94 355
9 TraesCS2D01G118300 chr7D 92.652 313 22 1 4045 4356 26829870 26830182 2.390000e-122 449
10 TraesCS2D01G118300 chr7D 92.332 313 19 5 4048 4356 78864420 78864109 1.440000e-119 440
11 TraesCS2D01G118300 chr3D 92.381 315 18 5 4045 4356 504981095 504980784 1.110000e-120 444
12 TraesCS2D01G118300 chr3A 92.357 314 19 5 4046 4356 647454734 647455045 4.000000e-120 442
13 TraesCS2D01G118300 chr6D 92.013 313 19 5 4048 4356 84091754 84092064 6.690000e-118 435
14 TraesCS2D01G118300 chr6D 90.402 323 25 6 4038 4356 400768742 400769062 1.870000e-113 420
15 TraesCS2D01G118300 chr6D 89.841 315 26 6 4046 4356 386161652 386161340 2.440000e-107 399
16 TraesCS2D01G118300 chr6D 89.206 315 27 5 4048 4356 110656167 110655854 1.900000e-103 387
17 TraesCS2D01G118300 chr5D 91.234 308 25 2 4051 4356 334290292 334289985 6.740000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G118300 chr2D 67551881 67556238 4357 True 8048.00 8048 100.00000 1 4358 1 chr2D.!!$R1 4357
1 TraesCS2D01G118300 chr2A 66805061 66809799 4738 False 1281.25 2595 91.49025 1 4061 4 chr2A.!!$F1 4060
2 TraesCS2D01G118300 chr2B 102977614 102983327 5713 False 1223.00 2351 91.75250 1 4057 4 chr2B.!!$F1 4056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 3007 0.107654 CCGATCCAACCCCAAGAGAC 60.108 60.0 0.00 0.00 0.0 3.36 F
1635 3723 0.251297 TTTGTGGCCCTCATGAGTGG 60.251 55.0 21.11 20.58 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 4728 0.104672 TTGGTCAGGTCTGGAAGGGA 60.105 55.0 0.0 0.0 0.0 4.2 R
3482 5613 0.257039 GGGTCACCTTGATGCCTGAT 59.743 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 136 1.003355 TGAACCAGCTAGCTGCCAC 60.003 57.895 34.82 25.79 44.23 5.01
307 367 0.871722 GCAAGCACGGTGTGTTATCA 59.128 50.000 10.24 0.00 35.75 2.15
323 383 6.073058 TGTGTTATCAGCTTGAGATGAACAAC 60.073 38.462 14.84 14.84 44.14 3.32
324 384 5.997129 TGTTATCAGCTTGAGATGAACAACA 59.003 36.000 18.06 18.06 44.14 3.33
327 387 4.903054 TCAGCTTGAGATGAACAACAGAT 58.097 39.130 0.00 0.00 37.53 2.90
328 388 4.694037 TCAGCTTGAGATGAACAACAGATG 59.306 41.667 0.00 0.00 37.53 2.90
345 405 6.670695 ACAGATGGTATGCAGTATACATCA 57.329 37.500 10.48 2.66 42.85 3.07
346 406 6.459066 ACAGATGGTATGCAGTATACATCAC 58.541 40.000 10.48 0.00 42.85 3.06
347 407 5.871524 CAGATGGTATGCAGTATACATCACC 59.128 44.000 10.48 5.58 42.85 4.02
348 408 5.543790 AGATGGTATGCAGTATACATCACCA 59.456 40.000 10.48 10.68 42.85 4.17
349 409 5.823861 TGGTATGCAGTATACATCACCAT 57.176 39.130 10.48 2.94 42.85 3.55
350 410 5.550290 TGGTATGCAGTATACATCACCATG 58.450 41.667 10.48 0.00 42.85 3.66
351 411 5.071653 TGGTATGCAGTATACATCACCATGT 59.928 40.000 10.48 0.00 45.73 3.21
352 412 5.639506 GGTATGCAGTATACATCACCATGTC 59.360 44.000 10.48 0.00 42.66 3.06
354 414 5.357742 TGCAGTATACATCACCATGTCTT 57.642 39.130 5.50 0.00 42.66 3.01
355 415 5.118286 TGCAGTATACATCACCATGTCTTG 58.882 41.667 5.50 0.00 42.66 3.02
356 416 5.118990 GCAGTATACATCACCATGTCTTGT 58.881 41.667 5.50 0.00 42.66 3.16
357 417 5.007039 GCAGTATACATCACCATGTCTTGTG 59.993 44.000 5.50 0.00 42.66 3.33
372 432 4.816385 TGTCTTGTGTCTTGTGATCTTTCC 59.184 41.667 0.00 0.00 0.00 3.13
384 444 4.054671 GTGATCTTTCCTATGAGCTTCCG 58.945 47.826 0.00 0.00 0.00 4.30
385 445 3.960755 TGATCTTTCCTATGAGCTTCCGA 59.039 43.478 0.00 0.00 0.00 4.55
386 446 4.405680 TGATCTTTCCTATGAGCTTCCGAA 59.594 41.667 0.00 0.00 0.00 4.30
387 447 5.070981 TGATCTTTCCTATGAGCTTCCGAAT 59.929 40.000 0.00 0.00 0.00 3.34
388 448 4.697514 TCTTTCCTATGAGCTTCCGAATG 58.302 43.478 0.00 0.00 0.00 2.67
389 449 2.533266 TCCTATGAGCTTCCGAATGC 57.467 50.000 0.00 0.00 0.00 3.56
390 450 1.143305 CCTATGAGCTTCCGAATGCG 58.857 55.000 0.00 0.00 37.24 4.73
404 464 3.732943 CGAATGCGGTAGAAACTTTGAC 58.267 45.455 0.00 0.00 0.00 3.18
408 491 1.458445 GCGGTAGAAACTTTGACGGTC 59.542 52.381 0.00 0.00 0.00 4.79
410 493 2.473984 CGGTAGAAACTTTGACGGTCAC 59.526 50.000 10.97 0.00 0.00 3.67
423 506 0.389948 CGGTCACAGCTTCCACCTAC 60.390 60.000 3.76 0.00 0.00 3.18
425 508 2.176889 GGTCACAGCTTCCACCTACTA 58.823 52.381 0.00 0.00 0.00 1.82
426 509 2.766828 GGTCACAGCTTCCACCTACTAT 59.233 50.000 0.00 0.00 0.00 2.12
427 510 3.197983 GGTCACAGCTTCCACCTACTATT 59.802 47.826 0.00 0.00 0.00 1.73
428 511 4.323562 GGTCACAGCTTCCACCTACTATTT 60.324 45.833 0.00 0.00 0.00 1.40
430 513 4.530553 TCACAGCTTCCACCTACTATTTGA 59.469 41.667 0.00 0.00 0.00 2.69
431 514 4.872691 CACAGCTTCCACCTACTATTTGAG 59.127 45.833 0.00 0.00 0.00 3.02
432 515 3.873952 CAGCTTCCACCTACTATTTGAGC 59.126 47.826 0.00 0.00 0.00 4.26
433 516 3.519510 AGCTTCCACCTACTATTTGAGCA 59.480 43.478 0.00 0.00 0.00 4.26
434 517 4.019321 AGCTTCCACCTACTATTTGAGCAA 60.019 41.667 0.00 0.00 0.00 3.91
435 518 4.333926 GCTTCCACCTACTATTTGAGCAAG 59.666 45.833 0.00 0.00 0.00 4.01
436 519 3.873910 TCCACCTACTATTTGAGCAAGC 58.126 45.455 0.00 0.00 0.00 4.01
437 520 2.609459 CCACCTACTATTTGAGCAAGCG 59.391 50.000 0.00 0.00 0.00 4.68
438 521 2.030946 CACCTACTATTTGAGCAAGCGC 59.969 50.000 0.00 0.00 38.99 5.92
479 563 3.320541 AGATGAAGAACCGATAGCAGGAG 59.679 47.826 0.00 0.00 0.00 3.69
480 564 1.137086 TGAAGAACCGATAGCAGGAGC 59.863 52.381 0.00 0.00 42.56 4.70
486 771 1.615883 ACCGATAGCAGGAGCATACTG 59.384 52.381 0.00 0.00 45.49 2.74
488 773 2.820197 CCGATAGCAGGAGCATACTGTA 59.180 50.000 4.59 0.00 45.49 2.74
489 774 3.445450 CCGATAGCAGGAGCATACTGTAT 59.555 47.826 0.00 0.00 45.49 2.29
490 775 4.439426 CCGATAGCAGGAGCATACTGTATC 60.439 50.000 0.00 8.45 45.49 2.24
499 784 7.523873 GCAGGAGCATACTGTATCTGTATTGTA 60.524 40.741 12.85 0.00 41.58 2.41
500 785 8.526978 CAGGAGCATACTGTATCTGTATTGTAT 58.473 37.037 0.00 0.00 0.00 2.29
501 786 8.526978 AGGAGCATACTGTATCTGTATTGTATG 58.473 37.037 0.00 0.00 39.77 2.39
508 793 6.426025 ACTGTATCTGTATTGTATGCATGCAG 59.574 38.462 26.69 8.97 0.00 4.41
510 795 7.441017 TGTATCTGTATTGTATGCATGCAGTA 58.559 34.615 26.69 15.75 0.00 2.74
511 796 7.930865 TGTATCTGTATTGTATGCATGCAGTAA 59.069 33.333 26.69 19.42 0.00 2.24
516 801 7.249858 TGTATTGTATGCATGCAGTAAGTTTG 58.750 34.615 26.69 0.00 0.00 2.93
517 802 4.700268 TGTATGCATGCAGTAAGTTTGG 57.300 40.909 26.69 0.00 0.00 3.28
518 803 4.331108 TGTATGCATGCAGTAAGTTTGGA 58.669 39.130 26.69 0.00 0.00 3.53
519 804 4.764308 TGTATGCATGCAGTAAGTTTGGAA 59.236 37.500 26.69 0.00 0.00 3.53
524 809 3.921119 TGCAGTAAGTTTGGAATGCAG 57.079 42.857 0.00 0.00 38.64 4.41
526 811 2.229784 GCAGTAAGTTTGGAATGCAGCT 59.770 45.455 0.00 0.00 33.92 4.24
528 813 3.503363 CAGTAAGTTTGGAATGCAGCTGA 59.497 43.478 20.43 2.70 0.00 4.26
531 816 2.590821 AGTTTGGAATGCAGCTGAACT 58.409 42.857 20.43 13.25 0.00 3.01
532 817 3.754965 AGTTTGGAATGCAGCTGAACTA 58.245 40.909 20.43 0.00 0.00 2.24
534 819 4.584325 AGTTTGGAATGCAGCTGAACTAAA 59.416 37.500 20.43 11.77 0.00 1.85
535 820 5.244626 AGTTTGGAATGCAGCTGAACTAAAT 59.755 36.000 20.43 0.00 0.00 1.40
537 822 4.592942 TGGAATGCAGCTGAACTAAATCT 58.407 39.130 20.43 0.00 0.00 2.40
538 823 4.397103 TGGAATGCAGCTGAACTAAATCTG 59.603 41.667 20.43 0.00 0.00 2.90
544 1286 4.813161 GCAGCTGAACTAAATCTGCAGATA 59.187 41.667 28.92 13.99 46.64 1.98
561 1303 7.662669 TCTGCAGATATTTCTAATGCAGCATAA 59.337 33.333 13.74 0.00 42.22 1.90
562 1304 7.587629 TGCAGATATTTCTAATGCAGCATAAC 58.412 34.615 8.75 0.00 0.00 1.89
563 1305 7.229106 TGCAGATATTTCTAATGCAGCATAACA 59.771 33.333 8.75 0.00 0.00 2.41
564 1306 8.242053 GCAGATATTTCTAATGCAGCATAACAT 58.758 33.333 8.75 0.00 0.00 2.71
567 1309 9.713740 GATATTTCTAATGCAGCATAACATAGC 57.286 33.333 8.75 1.01 0.00 2.97
568 1310 6.940831 TTTCTAATGCAGCATAACATAGCA 57.059 33.333 8.75 0.00 39.79 3.49
569 1311 7.514784 TTTCTAATGCAGCATAACATAGCAT 57.485 32.000 8.75 0.00 46.86 3.79
570 1312 6.490566 TCTAATGCAGCATAACATAGCATG 57.509 37.500 8.75 0.00 44.40 4.06
571 1313 6.232692 TCTAATGCAGCATAACATAGCATGA 58.767 36.000 8.75 0.00 44.40 3.07
572 1314 5.777850 AATGCAGCATAACATAGCATGAA 57.222 34.783 8.75 0.00 44.40 2.57
573 1315 5.977489 ATGCAGCATAACATAGCATGAAT 57.023 34.783 5.94 0.00 43.60 2.57
574 1316 5.777850 TGCAGCATAACATAGCATGAATT 57.222 34.783 0.00 0.00 0.00 2.17
575 1317 6.151663 TGCAGCATAACATAGCATGAATTT 57.848 33.333 0.00 0.00 0.00 1.82
576 1318 6.575267 TGCAGCATAACATAGCATGAATTTT 58.425 32.000 0.00 0.00 0.00 1.82
577 1319 6.698329 TGCAGCATAACATAGCATGAATTTTC 59.302 34.615 0.00 0.00 0.00 2.29
578 1320 6.145048 GCAGCATAACATAGCATGAATTTTCC 59.855 38.462 0.00 0.00 0.00 3.13
579 1321 6.643770 CAGCATAACATAGCATGAATTTTCCC 59.356 38.462 0.00 0.00 0.00 3.97
580 1322 6.552350 AGCATAACATAGCATGAATTTTCCCT 59.448 34.615 0.00 0.00 0.00 4.20
581 1323 6.865205 GCATAACATAGCATGAATTTTCCCTC 59.135 38.462 0.00 0.00 0.00 4.30
582 1324 7.470424 GCATAACATAGCATGAATTTTCCCTCA 60.470 37.037 0.00 0.00 0.00 3.86
583 1325 6.855763 AACATAGCATGAATTTTCCCTCAA 57.144 33.333 0.00 0.00 0.00 3.02
584 1326 6.855763 ACATAGCATGAATTTTCCCTCAAA 57.144 33.333 0.00 0.00 0.00 2.69
585 1327 7.427989 ACATAGCATGAATTTTCCCTCAAAT 57.572 32.000 0.00 0.00 0.00 2.32
586 1328 8.537728 ACATAGCATGAATTTTCCCTCAAATA 57.462 30.769 0.00 0.00 0.00 1.40
587 1329 8.980596 ACATAGCATGAATTTTCCCTCAAATAA 58.019 29.630 0.00 0.00 0.00 1.40
588 1330 9.820725 CATAGCATGAATTTTCCCTCAAATAAA 57.179 29.630 0.00 0.00 0.00 1.40
589 1331 9.822185 ATAGCATGAATTTTCCCTCAAATAAAC 57.178 29.630 0.00 0.00 0.00 2.01
590 1332 7.678837 AGCATGAATTTTCCCTCAAATAAACA 58.321 30.769 0.00 0.00 0.00 2.83
591 1333 8.323567 AGCATGAATTTTCCCTCAAATAAACAT 58.676 29.630 0.00 0.00 0.00 2.71
592 1334 9.598517 GCATGAATTTTCCCTCAAATAAACATA 57.401 29.630 0.00 0.00 0.00 2.29
594 1336 9.822185 ATGAATTTTCCCTCAAATAAACATAGC 57.178 29.630 0.00 0.00 0.00 2.97
595 1337 8.811017 TGAATTTTCCCTCAAATAAACATAGCA 58.189 29.630 0.00 0.00 0.00 3.49
596 1338 9.822185 GAATTTTCCCTCAAATAAACATAGCAT 57.178 29.630 0.00 0.00 0.00 3.79
602 1344 8.859090 TCCCTCAAATAAACATAGCATAAATGG 58.141 33.333 0.00 0.00 0.00 3.16
603 1345 8.641541 CCCTCAAATAAACATAGCATAAATGGT 58.358 33.333 0.00 0.00 41.93 3.55
611 1353 8.677148 AAACATAGCATAAATGGTACTGTAGG 57.323 34.615 4.11 0.00 42.72 3.18
612 1354 7.612065 ACATAGCATAAATGGTACTGTAGGA 57.388 36.000 4.11 0.00 42.72 2.94
613 1355 7.671302 ACATAGCATAAATGGTACTGTAGGAG 58.329 38.462 4.11 0.00 42.72 3.69
614 1356 7.290248 ACATAGCATAAATGGTACTGTAGGAGT 59.710 37.037 4.11 0.00 42.72 3.85
615 1357 5.918608 AGCATAAATGGTACTGTAGGAGTG 58.081 41.667 0.00 0.00 36.64 3.51
616 1358 5.661312 AGCATAAATGGTACTGTAGGAGTGA 59.339 40.000 0.00 0.00 36.64 3.41
617 1359 6.156256 AGCATAAATGGTACTGTAGGAGTGAA 59.844 38.462 0.00 0.00 36.64 3.18
618 1360 6.480320 GCATAAATGGTACTGTAGGAGTGAAG 59.520 42.308 0.00 0.00 35.96 3.02
619 1361 7.556844 CATAAATGGTACTGTAGGAGTGAAGT 58.443 38.462 0.00 0.00 35.96 3.01
620 1362 6.435292 AAATGGTACTGTAGGAGTGAAGTT 57.565 37.500 0.00 0.00 35.96 2.66
621 1363 5.662674 ATGGTACTGTAGGAGTGAAGTTC 57.337 43.478 0.00 0.00 35.96 3.01
622 1364 3.504906 TGGTACTGTAGGAGTGAAGTTCG 59.495 47.826 0.00 0.00 35.96 3.95
623 1365 3.755378 GGTACTGTAGGAGTGAAGTTCGA 59.245 47.826 0.00 0.00 35.96 3.71
624 1366 4.217118 GGTACTGTAGGAGTGAAGTTCGAA 59.783 45.833 0.00 0.00 35.96 3.71
625 1367 4.931661 ACTGTAGGAGTGAAGTTCGAAA 57.068 40.909 0.00 0.00 31.75 3.46
626 1368 5.272283 ACTGTAGGAGTGAAGTTCGAAAA 57.728 39.130 0.00 0.00 31.75 2.29
627 1369 5.855045 ACTGTAGGAGTGAAGTTCGAAAAT 58.145 37.500 0.00 0.00 31.75 1.82
628 1370 6.989659 ACTGTAGGAGTGAAGTTCGAAAATA 58.010 36.000 0.00 0.00 31.75 1.40
629 1371 7.612677 ACTGTAGGAGTGAAGTTCGAAAATAT 58.387 34.615 0.00 0.00 31.75 1.28
630 1372 8.095169 ACTGTAGGAGTGAAGTTCGAAAATATT 58.905 33.333 0.00 0.00 31.75 1.28
631 1373 8.842358 TGTAGGAGTGAAGTTCGAAAATATTT 57.158 30.769 0.00 0.00 0.00 1.40
632 1374 8.932791 TGTAGGAGTGAAGTTCGAAAATATTTC 58.067 33.333 0.00 0.41 0.00 2.17
633 1375 9.152595 GTAGGAGTGAAGTTCGAAAATATTTCT 57.847 33.333 0.00 0.00 0.00 2.52
634 1376 8.034058 AGGAGTGAAGTTCGAAAATATTTCTG 57.966 34.615 0.00 0.00 0.00 3.02
635 1377 7.878127 AGGAGTGAAGTTCGAAAATATTTCTGA 59.122 33.333 0.00 0.00 0.00 3.27
636 1378 8.669243 GGAGTGAAGTTCGAAAATATTTCTGAT 58.331 33.333 0.00 0.00 0.00 2.90
637 1379 9.483062 GAGTGAAGTTCGAAAATATTTCTGATG 57.517 33.333 0.00 0.00 0.00 3.07
638 1380 7.965107 AGTGAAGTTCGAAAATATTTCTGATGC 59.035 33.333 0.00 0.39 0.00 3.91
639 1381 7.750458 GTGAAGTTCGAAAATATTTCTGATGCA 59.250 33.333 0.00 0.00 0.00 3.96
640 1382 7.964559 TGAAGTTCGAAAATATTTCTGATGCAG 59.035 33.333 0.00 0.00 0.00 4.41
641 1383 6.261118 AGTTCGAAAATATTTCTGATGCAGC 58.739 36.000 0.00 0.00 0.00 5.25
644 1386 6.798482 TCGAAAATATTTCTGATGCAGCATT 58.202 32.000 9.90 0.00 0.00 3.56
647 1389 7.859377 CGAAAATATTTCTGATGCAGCATTACT 59.141 33.333 9.90 0.00 0.00 2.24
705 1449 5.039333 CACTGAACTCTTGCTTGGAAAAAG 58.961 41.667 0.00 0.00 0.00 2.27
706 1450 4.098501 ACTGAACTCTTGCTTGGAAAAAGG 59.901 41.667 0.00 0.00 0.00 3.11
707 1451 4.277476 TGAACTCTTGCTTGGAAAAAGGA 58.723 39.130 0.00 0.00 0.00 3.36
708 1452 4.097892 TGAACTCTTGCTTGGAAAAAGGAC 59.902 41.667 0.00 0.00 0.00 3.85
709 1453 3.631250 ACTCTTGCTTGGAAAAAGGACA 58.369 40.909 0.00 0.00 0.00 4.02
710 1454 3.381590 ACTCTTGCTTGGAAAAAGGACAC 59.618 43.478 0.00 0.00 0.00 3.67
711 1455 3.631250 TCTTGCTTGGAAAAAGGACACT 58.369 40.909 0.00 0.00 0.00 3.55
744 1962 4.712122 TGTCTTCTTTTTGACCGCTTTT 57.288 36.364 0.00 0.00 32.67 2.27
756 1974 0.242017 CCGCTTTTGAGCCTTGGAAG 59.758 55.000 0.00 0.00 0.00 3.46
810 2890 5.541845 CCATACAGAGACACTTTTGACTCA 58.458 41.667 6.84 0.00 44.26 3.41
894 2978 2.490148 CGCGGCATAGAGGGACAGA 61.490 63.158 0.00 0.00 0.00 3.41
910 2994 0.312416 CAGACGATCTGGTCCGATCC 59.688 60.000 14.29 5.54 40.71 3.36
923 3007 0.107654 CCGATCCAACCCCAAGAGAC 60.108 60.000 0.00 0.00 0.00 3.36
935 3019 2.383855 CCAAGAGACCAACCAACCAAA 58.616 47.619 0.00 0.00 0.00 3.28
950 3034 1.566018 CCAAACCCGAACAGACGAGC 61.566 60.000 0.00 0.00 35.09 5.03
959 3043 4.821589 CAGACGAGCCGCCTTCCC 62.822 72.222 0.00 0.00 0.00 3.97
970 3054 2.379459 GCCTTCCCCTTCCTCCTCC 61.379 68.421 0.00 0.00 0.00 4.30
973 3057 1.001760 TTCCCCTTCCTCCTCCTCG 59.998 63.158 0.00 0.00 0.00 4.63
974 3058 2.444895 CCCCTTCCTCCTCCTCGG 60.445 72.222 0.00 0.00 0.00 4.63
975 3059 3.157949 CCCTTCCTCCTCCTCGGC 61.158 72.222 0.00 0.00 0.00 5.54
976 3060 3.157949 CCTTCCTCCTCCTCGGCC 61.158 72.222 0.00 0.00 0.00 6.13
978 3062 3.984186 CTTCCTCCTCCTCGGCCCA 62.984 68.421 0.00 0.00 0.00 5.36
979 3063 3.984186 TTCCTCCTCCTCGGCCCAG 62.984 68.421 0.00 0.00 0.00 4.45
1240 3324 0.658897 TCGTTTCAAGCGTGGGTTTC 59.341 50.000 0.00 0.00 0.00 2.78
1261 3345 0.730840 GCTTAATTCGGTTCGGTGGG 59.269 55.000 0.00 0.00 0.00 4.61
1272 3356 1.427895 TTCGGTGGGGGAATTGGTCA 61.428 55.000 0.00 0.00 0.00 4.02
1273 3357 1.075836 CGGTGGGGGAATTGGTCAA 59.924 57.895 0.00 0.00 0.00 3.18
1274 3358 0.540830 CGGTGGGGGAATTGGTCAAA 60.541 55.000 0.00 0.00 0.00 2.69
1284 3368 3.573967 GGAATTGGTCAAAAGCTCAAGGA 59.426 43.478 0.00 0.00 0.00 3.36
1286 3370 3.297134 TTGGTCAAAAGCTCAAGGACT 57.703 42.857 0.00 0.00 0.00 3.85
1287 3371 3.297134 TGGTCAAAAGCTCAAGGACTT 57.703 42.857 0.00 0.00 0.00 3.01
1337 3424 2.704725 TTTGCTCGTTGATTGCTTCC 57.295 45.000 0.00 0.00 0.00 3.46
1339 3426 1.442769 TGCTCGTTGATTGCTTCCTC 58.557 50.000 0.00 0.00 0.00 3.71
1364 3451 1.493772 CGGAGTGCGTGTAGTTGAAA 58.506 50.000 0.00 0.00 0.00 2.69
1423 3510 4.514781 TCAAGTAGTTTCTCGCTGCTTA 57.485 40.909 0.00 0.00 36.91 3.09
1478 3565 3.260632 TGTGAGGTTTGCAGTGCTAGATA 59.739 43.478 17.60 0.00 0.00 1.98
1489 3577 7.686438 TGCAGTGCTAGATAAGAAAAATGAA 57.314 32.000 17.60 0.00 0.00 2.57
1556 3644 4.565531 GCTGCTTGCACATGAACC 57.434 55.556 0.00 0.00 42.31 3.62
1595 3683 4.981674 GGACTGCGTGATTCAAAATTTCAA 59.018 37.500 0.00 0.00 0.00 2.69
1624 3712 3.261580 GGATGCTTTACATTTTGTGGCC 58.738 45.455 0.00 0.00 39.84 5.36
1635 3723 0.251297 TTTGTGGCCCTCATGAGTGG 60.251 55.000 21.11 20.58 0.00 4.00
1639 3727 2.048603 GGCCCTCATGAGTGGTTGC 61.049 63.158 21.11 14.06 0.00 4.17
1705 3794 3.549423 GCATACTTGCGTCCGTATAGTCA 60.549 47.826 0.00 0.00 39.49 3.41
1708 3797 4.485024 ACTTGCGTCCGTATAGTCATAG 57.515 45.455 0.00 0.00 0.00 2.23
1794 3885 7.285401 AGCAGGGTTTTACTTTGGTATGATATG 59.715 37.037 0.00 0.00 0.00 1.78
2065 4156 6.394025 AAATTTGGCTGTGAAAAATGCAAT 57.606 29.167 0.00 0.00 0.00 3.56
2092 4183 3.299503 CCATAAAGGCAAGCAAGGGTAT 58.700 45.455 0.00 0.00 0.00 2.73
2149 4240 6.095300 TGTCTAACCCTTGAAATGCATGTATG 59.905 38.462 0.00 0.00 0.00 2.39
2213 4304 3.488216 GCTGCCATTTGCTACTTCTAAGC 60.488 47.826 0.00 0.00 42.00 3.09
2312 4422 1.317613 TTGCCACAGAACATGACACC 58.682 50.000 0.00 0.00 0.00 4.16
2376 4486 4.517075 CAGTCTCCAGTTATAGATCGAGCA 59.483 45.833 2.38 0.00 0.00 4.26
2482 4592 1.339438 TGCCTGATTTCTGGACTGCTC 60.339 52.381 7.60 0.00 37.15 4.26
2546 4656 7.931407 TGCTGATGTTCTCAACTTTACTCTTTA 59.069 33.333 0.00 0.00 32.14 1.85
2926 5042 8.834465 ACTAGATAATGTGATGAACTGAAATGC 58.166 33.333 0.00 0.00 0.00 3.56
2950 5066 6.591062 GCCTTCAACAATGCTCATTCATAAAA 59.409 34.615 0.00 0.00 0.00 1.52
2983 5106 5.122711 GGAAACTAAAGCCGTTATGCAGTTA 59.877 40.000 0.00 0.00 28.46 2.24
3042 5166 0.886490 GGGCACTGTCACCTCTGTTG 60.886 60.000 0.00 0.00 0.00 3.33
3086 5210 0.836606 TCCACAGTGTCTCCTTGCAA 59.163 50.000 0.00 0.00 0.00 4.08
3092 5216 2.880268 CAGTGTCTCCTTGCAATGTTGA 59.120 45.455 0.00 0.00 0.00 3.18
3093 5217 2.880890 AGTGTCTCCTTGCAATGTTGAC 59.119 45.455 0.00 10.85 0.00 3.18
3132 5256 4.196626 TGAAACGGTTCCTTATCGATGT 57.803 40.909 11.41 0.00 32.28 3.06
3133 5257 3.930229 TGAAACGGTTCCTTATCGATGTG 59.070 43.478 11.41 0.07 32.28 3.21
3134 5258 3.880047 AACGGTTCCTTATCGATGTGA 57.120 42.857 8.54 0.00 0.00 3.58
3135 5259 3.880047 ACGGTTCCTTATCGATGTGAA 57.120 42.857 8.54 5.14 0.00 3.18
3136 5260 4.196626 ACGGTTCCTTATCGATGTGAAA 57.803 40.909 8.54 0.00 0.00 2.69
3137 5261 4.571919 ACGGTTCCTTATCGATGTGAAAA 58.428 39.130 8.54 0.00 0.00 2.29
3138 5262 4.390909 ACGGTTCCTTATCGATGTGAAAAC 59.609 41.667 8.54 6.13 0.00 2.43
3172 5296 5.049267 TGTTACTGGAATTTTACTTCACCGC 60.049 40.000 0.00 0.00 0.00 5.68
3199 5323 8.319752 TGGCAACTACCACCTATATGGAACAG 62.320 46.154 0.00 0.00 36.71 3.16
3259 5387 7.736031 TCTTATATTGTGTTTTCTCGAGTCG 57.264 36.000 13.13 6.09 0.00 4.18
3274 5402 0.461961 AGTCGTCAGCCTTCCTATGC 59.538 55.000 0.00 0.00 0.00 3.14
3453 5584 5.005740 TGGTTTCATCTGAACCTCAATCAG 58.994 41.667 7.45 0.00 44.53 2.90
3481 5612 2.474410 AGTGTAAACCTAGCAGTGGC 57.526 50.000 0.00 0.00 41.61 5.01
3482 5613 1.697432 AGTGTAAACCTAGCAGTGGCA 59.303 47.619 0.00 0.00 44.61 4.92
3483 5614 2.305927 AGTGTAAACCTAGCAGTGGCAT 59.694 45.455 0.00 0.00 44.61 4.40
3484 5615 2.678336 GTGTAAACCTAGCAGTGGCATC 59.322 50.000 0.00 0.00 44.61 3.91
3485 5616 2.304470 TGTAAACCTAGCAGTGGCATCA 59.696 45.455 0.00 0.00 44.61 3.07
3486 5617 2.119801 AAACCTAGCAGTGGCATCAG 57.880 50.000 0.00 0.00 44.61 2.90
3520 5651 2.680841 CCCGTCACAGTGAACAAAAGAA 59.319 45.455 4.32 0.00 0.00 2.52
3523 5654 4.201910 CCGTCACAGTGAACAAAAGAACAT 60.202 41.667 4.32 0.00 0.00 2.71
3586 5746 3.509184 GGTCTAACGGTCCCTATACCATC 59.491 52.174 0.00 0.00 39.71 3.51
3590 5750 3.323774 ACGGTCCCTATACCATCAGAA 57.676 47.619 0.00 0.00 39.71 3.02
3633 5793 7.526608 TGTATTCTGCACTTTATTACTGTTGC 58.473 34.615 0.00 0.00 0.00 4.17
3634 5794 5.371115 TTCTGCACTTTATTACTGTTGCC 57.629 39.130 0.00 0.00 0.00 4.52
3666 5826 2.486592 CTGAGTTTGTGATGATGCAGCA 59.513 45.455 7.31 7.31 0.00 4.41
3667 5827 2.486592 TGAGTTTGTGATGATGCAGCAG 59.513 45.455 11.66 0.00 27.67 4.24
3668 5828 2.745821 GAGTTTGTGATGATGCAGCAGA 59.254 45.455 11.66 0.00 27.67 4.26
3669 5829 2.747989 AGTTTGTGATGATGCAGCAGAG 59.252 45.455 11.66 0.00 27.67 3.35
3670 5830 2.745821 GTTTGTGATGATGCAGCAGAGA 59.254 45.455 11.66 0.00 27.67 3.10
3671 5831 3.277142 TTGTGATGATGCAGCAGAGAT 57.723 42.857 11.66 0.00 27.67 2.75
3672 5832 2.561569 TGTGATGATGCAGCAGAGATG 58.438 47.619 11.66 0.00 27.67 2.90
3673 5833 2.169769 TGTGATGATGCAGCAGAGATGA 59.830 45.455 11.66 0.00 27.67 2.92
3674 5834 3.181454 TGTGATGATGCAGCAGAGATGAT 60.181 43.478 11.66 0.00 27.67 2.45
3675 5835 3.187432 GTGATGATGCAGCAGAGATGATG 59.813 47.826 11.66 0.00 27.67 3.07
3691 5851 1.773054 GATGCAGCTCGCCACTGATG 61.773 60.000 0.00 0.00 41.33 3.07
3700 5860 0.952497 CGCCACTGATGTGCTTGAGT 60.952 55.000 0.00 0.00 42.54 3.41
3703 5863 1.538512 CCACTGATGTGCTTGAGTTGG 59.461 52.381 0.00 0.00 42.54 3.77
3761 5921 1.689352 GAAATGCAATGCCGCTGTGC 61.689 55.000 1.53 10.79 38.78 4.57
3771 5931 2.551912 CCGCTGTGCCCTTTTTCGT 61.552 57.895 0.00 0.00 0.00 3.85
3860 6020 2.072298 GATAGAATGCCTGGTCGATGC 58.928 52.381 0.00 0.00 0.00 3.91
3989 6149 3.243336 GTGCTAGTATACGCCTGTATGC 58.757 50.000 0.00 0.00 41.37 3.14
4016 6176 2.358090 CCCTAGTTGATGATGGGCCAAA 60.358 50.000 11.89 1.54 0.00 3.28
4065 6226 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
4066 6227 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
4067 6228 2.437359 GCATCTCCAACAGCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
4068 6229 2.467826 GCATCTCCAACAGCCGCTC 61.468 63.158 0.00 0.00 0.00 5.03
4069 6230 1.078918 CATCTCCAACAGCCGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
4070 6231 0.674581 CATCTCCAACAGCCGCTCAA 60.675 55.000 0.00 0.00 0.00 3.02
4071 6232 0.674895 ATCTCCAACAGCCGCTCAAC 60.675 55.000 0.00 0.00 0.00 3.18
4072 6233 2.664851 TCCAACAGCCGCTCAACG 60.665 61.111 0.00 0.00 43.15 4.10
4073 6234 4.389576 CCAACAGCCGCTCAACGC 62.390 66.667 0.00 0.00 41.76 4.84
4090 6251 3.428282 CGCCGCGCCCTAAAAACT 61.428 61.111 0.00 0.00 0.00 2.66
4091 6252 2.101835 CGCCGCGCCCTAAAAACTA 61.102 57.895 0.00 0.00 0.00 2.24
4092 6253 1.426621 GCCGCGCCCTAAAAACTAC 59.573 57.895 0.00 0.00 0.00 2.73
4093 6254 1.022982 GCCGCGCCCTAAAAACTACT 61.023 55.000 0.00 0.00 0.00 2.57
4094 6255 1.445871 CCGCGCCCTAAAAACTACTT 58.554 50.000 0.00 0.00 0.00 2.24
4095 6256 1.808343 CCGCGCCCTAAAAACTACTTT 59.192 47.619 0.00 0.00 0.00 2.66
4096 6257 2.413634 CCGCGCCCTAAAAACTACTTTG 60.414 50.000 0.00 0.00 0.00 2.77
4097 6258 2.592194 GCGCCCTAAAAACTACTTTGC 58.408 47.619 0.00 0.00 0.00 3.68
4098 6259 2.670229 GCGCCCTAAAAACTACTTTGCC 60.670 50.000 0.00 0.00 0.00 4.52
4099 6260 2.413634 CGCCCTAAAAACTACTTTGCCG 60.414 50.000 0.00 0.00 0.00 5.69
4100 6261 2.670229 GCCCTAAAAACTACTTTGCCGC 60.670 50.000 0.00 0.00 0.00 6.53
4101 6262 2.413634 CCCTAAAAACTACTTTGCCGCG 60.414 50.000 0.00 0.00 0.00 6.46
4102 6263 2.239201 CTAAAAACTACTTTGCCGCGC 58.761 47.619 0.00 0.00 0.00 6.86
4103 6264 0.659123 AAAAACTACTTTGCCGCGCG 60.659 50.000 25.67 25.67 0.00 6.86
4104 6265 3.588891 AAACTACTTTGCCGCGCGC 62.589 57.895 27.36 23.91 38.31 6.86
4119 6280 3.814268 CGCCCATCGCCTGGTTTG 61.814 66.667 0.00 0.00 44.30 2.93
4120 6281 3.451894 GCCCATCGCCTGGTTTGG 61.452 66.667 0.00 0.14 44.30 3.28
4156 6317 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
4157 6318 4.386951 TCCAGCAGCCGCGCTAAA 62.387 61.111 5.56 0.00 45.49 1.85
4158 6319 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
4159 6320 2.764314 CCAGCAGCCGCGCTAAAAT 61.764 57.895 5.56 0.00 45.49 1.82
4160 6321 1.584483 CAGCAGCCGCGCTAAAATG 60.584 57.895 5.56 0.00 45.49 2.32
4161 6322 2.951227 GCAGCCGCGCTAAAATGC 60.951 61.111 5.56 4.97 36.40 3.56
4162 6323 2.484662 CAGCCGCGCTAAAATGCA 59.515 55.556 5.56 0.00 36.40 3.96
4163 6324 1.584483 CAGCCGCGCTAAAATGCAG 60.584 57.895 5.56 0.00 36.40 4.41
4164 6325 2.951227 GCCGCGCTAAAATGCAGC 60.951 61.111 5.56 0.00 35.61 5.25
4169 6330 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
4170 6331 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
4188 6349 3.710233 CGACTCTCGCACAAACAAC 57.290 52.632 0.00 0.00 31.14 3.32
4189 6350 0.927537 CGACTCTCGCACAAACAACA 59.072 50.000 0.00 0.00 31.14 3.33
4190 6351 1.526887 CGACTCTCGCACAAACAACAT 59.473 47.619 0.00 0.00 31.14 2.71
4191 6352 2.729360 CGACTCTCGCACAAACAACATA 59.271 45.455 0.00 0.00 31.14 2.29
4192 6353 3.367932 CGACTCTCGCACAAACAACATAT 59.632 43.478 0.00 0.00 31.14 1.78
4193 6354 4.641954 GACTCTCGCACAAACAACATATG 58.358 43.478 0.00 0.00 0.00 1.78
4194 6355 3.120199 ACTCTCGCACAAACAACATATGC 60.120 43.478 1.58 0.00 0.00 3.14
4195 6356 2.810852 TCTCGCACAAACAACATATGCA 59.189 40.909 1.58 0.00 36.02 3.96
4196 6357 3.439825 TCTCGCACAAACAACATATGCAT 59.560 39.130 3.79 3.79 36.02 3.96
4197 6358 4.082841 TCTCGCACAAACAACATATGCATT 60.083 37.500 3.54 0.00 36.02 3.56
4198 6359 5.123027 TCTCGCACAAACAACATATGCATTA 59.877 36.000 3.54 0.00 36.02 1.90
4199 6360 5.092105 TCGCACAAACAACATATGCATTAC 58.908 37.500 3.54 0.00 36.02 1.89
4200 6361 4.855937 CGCACAAACAACATATGCATTACA 59.144 37.500 3.54 0.00 36.02 2.41
4201 6362 5.344396 CGCACAAACAACATATGCATTACAA 59.656 36.000 3.54 0.00 36.02 2.41
4202 6363 6.128982 CGCACAAACAACATATGCATTACAAA 60.129 34.615 3.54 0.00 36.02 2.83
4203 6364 7.008859 GCACAAACAACATATGCATTACAAAC 58.991 34.615 3.54 0.00 36.30 2.93
4204 6365 7.307042 GCACAAACAACATATGCATTACAAACA 60.307 33.333 3.54 0.00 36.30 2.83
4205 6366 8.003224 CACAAACAACATATGCATTACAAACAC 58.997 33.333 3.54 0.00 0.00 3.32
4206 6367 7.708322 ACAAACAACATATGCATTACAAACACA 59.292 29.630 3.54 0.00 0.00 3.72
4207 6368 8.546244 CAAACAACATATGCATTACAAACACAA 58.454 29.630 3.54 0.00 0.00 3.33
4208 6369 8.830201 AACAACATATGCATTACAAACACAAT 57.170 26.923 3.54 0.00 0.00 2.71
4209 6370 8.464770 ACAACATATGCATTACAAACACAATC 57.535 30.769 3.54 0.00 0.00 2.67
4210 6371 8.087136 ACAACATATGCATTACAAACACAATCA 58.913 29.630 3.54 0.00 0.00 2.57
4211 6372 8.923683 CAACATATGCATTACAAACACAATCAA 58.076 29.630 3.54 0.00 0.00 2.57
4212 6373 9.486497 AACATATGCATTACAAACACAATCAAA 57.514 25.926 3.54 0.00 0.00 2.69
4213 6374 9.486497 ACATATGCATTACAAACACAATCAAAA 57.514 25.926 3.54 0.00 0.00 2.44
4216 6377 8.659925 ATGCATTACAAACACAATCAAAAAGA 57.340 26.923 0.00 0.00 0.00 2.52
4217 6378 8.659925 TGCATTACAAACACAATCAAAAAGAT 57.340 26.923 0.00 0.00 39.09 2.40
4218 6379 8.763356 TGCATTACAAACACAATCAAAAAGATC 58.237 29.630 0.00 0.00 35.39 2.75
4219 6380 8.763356 GCATTACAAACACAATCAAAAAGATCA 58.237 29.630 0.00 0.00 35.39 2.92
4223 6384 8.545229 ACAAACACAATCAAAAAGATCAAACA 57.455 26.923 0.00 0.00 35.39 2.83
4224 6385 8.442384 ACAAACACAATCAAAAAGATCAAACAC 58.558 29.630 0.00 0.00 35.39 3.32
4225 6386 8.441608 CAAACACAATCAAAAAGATCAAACACA 58.558 29.630 0.00 0.00 35.39 3.72
4226 6387 8.545229 AACACAATCAAAAAGATCAAACACAA 57.455 26.923 0.00 0.00 35.39 3.33
4227 6388 8.545229 ACACAATCAAAAAGATCAAACACAAA 57.455 26.923 0.00 0.00 35.39 2.83
4228 6389 8.442384 ACACAATCAAAAAGATCAAACACAAAC 58.558 29.630 0.00 0.00 35.39 2.93
4229 6390 8.441608 CACAATCAAAAAGATCAAACACAAACA 58.558 29.630 0.00 0.00 35.39 2.83
4230 6391 8.997323 ACAATCAAAAAGATCAAACACAAACAA 58.003 25.926 0.00 0.00 35.39 2.83
4231 6392 9.823098 CAATCAAAAAGATCAAACACAAACAAA 57.177 25.926 0.00 0.00 35.39 2.83
4233 6394 9.824534 ATCAAAAAGATCAAACACAAACAAAAC 57.175 25.926 0.00 0.00 28.20 2.43
4234 6395 8.830580 TCAAAAAGATCAAACACAAACAAAACA 58.169 25.926 0.00 0.00 0.00 2.83
4235 6396 9.443283 CAAAAAGATCAAACACAAACAAAACAA 57.557 25.926 0.00 0.00 0.00 2.83
4238 6399 9.824534 AAAGATCAAACACAAACAAAACAAATC 57.175 25.926 0.00 0.00 0.00 2.17
4239 6400 8.545229 AGATCAAACACAAACAAAACAAATCA 57.455 26.923 0.00 0.00 0.00 2.57
4240 6401 8.997323 AGATCAAACACAAACAAAACAAATCAA 58.003 25.926 0.00 0.00 0.00 2.57
4241 6402 8.947304 ATCAAACACAAACAAAACAAATCAAC 57.053 26.923 0.00 0.00 0.00 3.18
4242 6403 7.919690 TCAAACACAAACAAAACAAATCAACA 58.080 26.923 0.00 0.00 0.00 3.33
4243 6404 8.397906 TCAAACACAAACAAAACAAATCAACAA 58.602 25.926 0.00 0.00 0.00 2.83
4244 6405 9.178427 CAAACACAAACAAAACAAATCAACAAT 57.822 25.926 0.00 0.00 0.00 2.71
4322 6483 9.862371 ACAACAAATAGTTCAATAACACAACAA 57.138 25.926 0.00 0.00 38.74 2.83
4339 6500 9.862371 AACACAACAAATAGTTCAACAATACAA 57.138 25.926 0.00 0.00 38.74 2.41
4340 6501 9.296400 ACACAACAAATAGTTCAACAATACAAC 57.704 29.630 0.00 0.00 38.74 3.32
4341 6502 9.295214 CACAACAAATAGTTCAACAATACAACA 57.705 29.630 0.00 0.00 38.74 3.33
4348 6509 9.691362 AATAGTTCAACAATACAACATCAAACC 57.309 29.630 0.00 0.00 0.00 3.27
4349 6510 7.106439 AGTTCAACAATACAACATCAAACCA 57.894 32.000 0.00 0.00 0.00 3.67
4350 6511 6.978080 AGTTCAACAATACAACATCAAACCAC 59.022 34.615 0.00 0.00 0.00 4.16
4351 6512 6.456795 TCAACAATACAACATCAAACCACA 57.543 33.333 0.00 0.00 0.00 4.17
4352 6513 6.867550 TCAACAATACAACATCAAACCACAA 58.132 32.000 0.00 0.00 0.00 3.33
4353 6514 7.323420 TCAACAATACAACATCAAACCACAAA 58.677 30.769 0.00 0.00 0.00 2.83
4354 6515 7.984050 TCAACAATACAACATCAAACCACAAAT 59.016 29.630 0.00 0.00 0.00 2.32
4355 6516 7.945033 ACAATACAACATCAAACCACAAATC 57.055 32.000 0.00 0.00 0.00 2.17
4356 6517 6.640499 ACAATACAACATCAAACCACAAATCG 59.360 34.615 0.00 0.00 0.00 3.34
4357 6518 4.647424 ACAACATCAAACCACAAATCGT 57.353 36.364 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 2.046892 AACGGTGGCAGCTAGCTG 60.047 61.111 35.54 35.54 46.15 4.24
121 122 2.266055 GAACGGTGGCAGCTAGCT 59.734 61.111 12.68 12.68 44.79 3.32
133 136 2.112815 GCCCCGGAATTCAGAACGG 61.113 63.158 0.73 10.54 45.57 4.44
307 367 4.008330 CCATCTGTTGTTCATCTCAAGCT 58.992 43.478 0.00 0.00 0.00 3.74
323 383 5.871524 GGTGATGTATACTGCATACCATCTG 59.128 44.000 4.17 0.00 39.08 2.90
324 384 5.543790 TGGTGATGTATACTGCATACCATCT 59.456 40.000 4.17 0.00 39.08 2.90
327 387 5.071653 ACATGGTGATGTATACTGCATACCA 59.928 40.000 15.26 15.26 41.27 3.25
328 388 5.551233 ACATGGTGATGTATACTGCATACC 58.449 41.667 4.17 6.45 41.27 2.73
345 405 3.558931 TCACAAGACACAAGACATGGT 57.441 42.857 0.00 0.00 0.00 3.55
346 406 4.321718 AGATCACAAGACACAAGACATGG 58.678 43.478 0.00 0.00 0.00 3.66
347 407 5.936686 AAGATCACAAGACACAAGACATG 57.063 39.130 0.00 0.00 0.00 3.21
348 408 5.471456 GGAAAGATCACAAGACACAAGACAT 59.529 40.000 0.00 0.00 0.00 3.06
349 409 4.816385 GGAAAGATCACAAGACACAAGACA 59.184 41.667 0.00 0.00 0.00 3.41
350 410 5.059833 AGGAAAGATCACAAGACACAAGAC 58.940 41.667 0.00 0.00 0.00 3.01
351 411 5.296151 AGGAAAGATCACAAGACACAAGA 57.704 39.130 0.00 0.00 0.00 3.02
352 412 6.875726 TCATAGGAAAGATCACAAGACACAAG 59.124 38.462 0.00 0.00 0.00 3.16
354 414 6.358974 TCATAGGAAAGATCACAAGACACA 57.641 37.500 0.00 0.00 0.00 3.72
355 415 5.293079 GCTCATAGGAAAGATCACAAGACAC 59.707 44.000 0.00 0.00 0.00 3.67
356 416 5.188555 AGCTCATAGGAAAGATCACAAGACA 59.811 40.000 0.00 0.00 0.00 3.41
357 417 5.669477 AGCTCATAGGAAAGATCACAAGAC 58.331 41.667 0.00 0.00 0.00 3.01
384 444 3.424433 CCGTCAAAGTTTCTACCGCATTC 60.424 47.826 0.00 0.00 0.00 2.67
385 445 2.482721 CCGTCAAAGTTTCTACCGCATT 59.517 45.455 0.00 0.00 0.00 3.56
386 446 2.073816 CCGTCAAAGTTTCTACCGCAT 58.926 47.619 0.00 0.00 0.00 4.73
387 447 1.202557 ACCGTCAAAGTTTCTACCGCA 60.203 47.619 0.00 0.00 0.00 5.69
388 448 1.458445 GACCGTCAAAGTTTCTACCGC 59.542 52.381 0.00 0.00 0.00 5.68
389 449 2.473984 GTGACCGTCAAAGTTTCTACCG 59.526 50.000 1.88 0.00 0.00 4.02
390 450 3.460103 TGTGACCGTCAAAGTTTCTACC 58.540 45.455 1.88 0.00 0.00 3.18
391 451 3.059800 GCTGTGACCGTCAAAGTTTCTAC 60.060 47.826 18.21 0.00 34.20 2.59
392 452 3.128349 GCTGTGACCGTCAAAGTTTCTA 58.872 45.455 18.21 0.00 34.20 2.10
393 453 1.940613 GCTGTGACCGTCAAAGTTTCT 59.059 47.619 18.21 0.00 34.20 2.52
394 454 1.940613 AGCTGTGACCGTCAAAGTTTC 59.059 47.619 18.21 4.09 34.20 2.78
395 455 2.038387 AGCTGTGACCGTCAAAGTTT 57.962 45.000 18.21 6.36 34.20 2.66
396 456 1.940613 GAAGCTGTGACCGTCAAAGTT 59.059 47.619 18.21 10.93 34.20 2.66
398 458 0.868406 GGAAGCTGTGACCGTCAAAG 59.132 55.000 13.69 13.69 34.82 2.77
399 459 0.179234 TGGAAGCTGTGACCGTCAAA 59.821 50.000 1.88 0.00 0.00 2.69
400 460 0.531974 GTGGAAGCTGTGACCGTCAA 60.532 55.000 1.88 0.00 0.00 3.18
401 461 1.069090 GTGGAAGCTGTGACCGTCA 59.931 57.895 0.00 0.00 0.00 4.35
402 462 1.668151 GGTGGAAGCTGTGACCGTC 60.668 63.158 0.00 0.00 0.00 4.79
423 506 0.940126 ATCGGCGCTTGCTCAAATAG 59.060 50.000 7.64 0.00 39.13 1.73
425 508 0.745845 AGATCGGCGCTTGCTCAAAT 60.746 50.000 7.64 0.00 39.13 2.32
426 509 1.375908 AGATCGGCGCTTGCTCAAA 60.376 52.632 7.64 0.00 39.13 2.69
427 510 2.102438 CAGATCGGCGCTTGCTCAA 61.102 57.895 7.64 0.00 39.13 3.02
428 511 2.510012 CAGATCGGCGCTTGCTCA 60.510 61.111 7.64 0.00 39.13 4.26
430 513 4.087892 ACCAGATCGGCGCTTGCT 62.088 61.111 7.64 0.00 39.03 3.91
431 514 3.567797 GACCAGATCGGCGCTTGC 61.568 66.667 7.64 0.00 39.03 4.01
432 515 1.880340 GAGACCAGATCGGCGCTTG 60.880 63.158 7.64 0.00 39.03 4.01
433 516 1.888436 TTGAGACCAGATCGGCGCTT 61.888 55.000 7.64 0.00 39.03 4.68
434 517 2.351244 TTGAGACCAGATCGGCGCT 61.351 57.895 7.64 0.00 39.03 5.92
435 518 2.167861 GTTGAGACCAGATCGGCGC 61.168 63.158 0.00 0.00 39.03 6.53
436 519 0.108615 AAGTTGAGACCAGATCGGCG 60.109 55.000 0.00 0.00 39.03 6.46
437 520 1.066858 TCAAGTTGAGACCAGATCGGC 60.067 52.381 0.08 0.00 39.03 5.54
461 545 1.137086 TGCTCCTGCTATCGGTTCTTC 59.863 52.381 0.00 0.00 40.48 2.87
468 552 4.397730 AGATACAGTATGCTCCTGCTATCG 59.602 45.833 0.00 0.00 42.53 2.92
480 564 8.385858 GCATGCATACAATACAGATACAGTATG 58.614 37.037 14.21 0.00 46.00 2.39
486 771 6.791887 ACTGCATGCATACAATACAGATAC 57.208 37.500 22.97 0.00 31.82 2.24
488 773 6.994496 ACTTACTGCATGCATACAATACAGAT 59.006 34.615 22.97 0.18 31.82 2.90
489 774 6.348498 ACTTACTGCATGCATACAATACAGA 58.652 36.000 22.97 0.00 31.82 3.41
490 775 6.609237 ACTTACTGCATGCATACAATACAG 57.391 37.500 22.97 8.59 32.95 2.74
499 784 4.751060 CATTCCAAACTTACTGCATGCAT 58.249 39.130 22.97 13.83 0.00 3.96
500 785 3.614630 GCATTCCAAACTTACTGCATGCA 60.615 43.478 21.29 21.29 36.59 3.96
501 786 2.925563 GCATTCCAAACTTACTGCATGC 59.074 45.455 11.82 11.82 0.00 4.06
502 787 4.171005 CTGCATTCCAAACTTACTGCATG 58.829 43.478 0.00 0.00 38.76 4.06
508 793 4.022849 AGTTCAGCTGCATTCCAAACTTAC 60.023 41.667 9.47 0.00 0.00 2.34
510 795 2.961062 AGTTCAGCTGCATTCCAAACTT 59.039 40.909 9.47 0.00 0.00 2.66
511 796 2.590821 AGTTCAGCTGCATTCCAAACT 58.409 42.857 9.47 8.86 0.00 2.66
516 801 4.918037 CAGATTTAGTTCAGCTGCATTCC 58.082 43.478 9.47 0.00 0.00 3.01
524 809 8.152309 AGAAATATCTGCAGATTTAGTTCAGC 57.848 34.615 32.94 10.76 36.05 4.26
531 816 8.509690 GCTGCATTAGAAATATCTGCAGATTTA 58.490 33.333 32.94 17.68 45.88 1.40
532 817 7.013942 TGCTGCATTAGAAATATCTGCAGATTT 59.986 33.333 32.94 22.90 45.88 2.17
534 819 6.002082 TGCTGCATTAGAAATATCTGCAGAT 58.998 36.000 30.85 30.85 45.88 2.90
535 820 5.370679 TGCTGCATTAGAAATATCTGCAGA 58.629 37.500 20.79 20.79 45.88 4.26
537 822 7.229106 TGTTATGCTGCATTAGAAATATCTGCA 59.771 33.333 21.56 0.00 37.10 4.41
538 823 7.587629 TGTTATGCTGCATTAGAAATATCTGC 58.412 34.615 21.56 0.00 37.10 4.26
544 1286 7.514784 TGCTATGTTATGCTGCATTAGAAAT 57.485 32.000 21.56 10.20 0.00 2.17
561 1303 6.855763 TTTGAGGGAAAATTCATGCTATGT 57.144 33.333 0.00 0.00 0.00 2.29
562 1304 9.820725 TTTATTTGAGGGAAAATTCATGCTATG 57.179 29.630 0.00 0.00 32.16 2.23
563 1305 9.822185 GTTTATTTGAGGGAAAATTCATGCTAT 57.178 29.630 0.00 0.00 32.16 2.97
564 1306 8.811017 TGTTTATTTGAGGGAAAATTCATGCTA 58.189 29.630 0.00 0.00 32.16 3.49
565 1307 7.678837 TGTTTATTTGAGGGAAAATTCATGCT 58.321 30.769 0.00 0.00 32.16 3.79
566 1308 7.903995 TGTTTATTTGAGGGAAAATTCATGC 57.096 32.000 0.00 0.00 32.16 4.06
568 1310 9.822185 GCTATGTTTATTTGAGGGAAAATTCAT 57.178 29.630 0.00 0.00 32.16 2.57
569 1311 8.811017 TGCTATGTTTATTTGAGGGAAAATTCA 58.189 29.630 0.00 0.00 32.16 2.57
570 1312 9.822185 ATGCTATGTTTATTTGAGGGAAAATTC 57.178 29.630 0.00 0.00 32.16 2.17
576 1318 8.859090 CCATTTATGCTATGTTTATTTGAGGGA 58.141 33.333 0.00 0.00 0.00 4.20
577 1319 8.641541 ACCATTTATGCTATGTTTATTTGAGGG 58.358 33.333 0.00 0.00 0.00 4.30
585 1327 9.772973 CCTACAGTACCATTTATGCTATGTTTA 57.227 33.333 0.00 0.00 0.00 2.01
586 1328 8.491134 TCCTACAGTACCATTTATGCTATGTTT 58.509 33.333 0.00 0.00 0.00 2.83
587 1329 8.029782 TCCTACAGTACCATTTATGCTATGTT 57.970 34.615 0.00 0.00 0.00 2.71
588 1330 7.290248 ACTCCTACAGTACCATTTATGCTATGT 59.710 37.037 0.00 0.00 31.37 2.29
589 1331 7.600375 CACTCCTACAGTACCATTTATGCTATG 59.400 40.741 0.00 0.00 32.21 2.23
590 1332 7.509318 TCACTCCTACAGTACCATTTATGCTAT 59.491 37.037 0.00 0.00 32.21 2.97
591 1333 6.837048 TCACTCCTACAGTACCATTTATGCTA 59.163 38.462 0.00 0.00 32.21 3.49
592 1334 5.661312 TCACTCCTACAGTACCATTTATGCT 59.339 40.000 0.00 0.00 32.21 3.79
593 1335 5.914033 TCACTCCTACAGTACCATTTATGC 58.086 41.667 0.00 0.00 32.21 3.14
594 1336 7.556844 ACTTCACTCCTACAGTACCATTTATG 58.443 38.462 0.00 0.00 32.21 1.90
595 1337 7.735326 ACTTCACTCCTACAGTACCATTTAT 57.265 36.000 0.00 0.00 32.21 1.40
596 1338 7.549147 AACTTCACTCCTACAGTACCATTTA 57.451 36.000 0.00 0.00 32.21 1.40
597 1339 6.435292 AACTTCACTCCTACAGTACCATTT 57.565 37.500 0.00 0.00 32.21 2.32
598 1340 5.336531 CGAACTTCACTCCTACAGTACCATT 60.337 44.000 0.00 0.00 32.21 3.16
599 1341 4.158025 CGAACTTCACTCCTACAGTACCAT 59.842 45.833 0.00 0.00 32.21 3.55
600 1342 3.504906 CGAACTTCACTCCTACAGTACCA 59.495 47.826 0.00 0.00 32.21 3.25
601 1343 3.755378 TCGAACTTCACTCCTACAGTACC 59.245 47.826 0.00 0.00 32.21 3.34
602 1344 5.368256 TTCGAACTTCACTCCTACAGTAC 57.632 43.478 0.00 0.00 32.21 2.73
603 1345 6.395426 TTTTCGAACTTCACTCCTACAGTA 57.605 37.500 0.00 0.00 32.21 2.74
604 1346 4.931661 TTTCGAACTTCACTCCTACAGT 57.068 40.909 0.00 0.00 34.67 3.55
605 1347 8.480643 AATATTTTCGAACTTCACTCCTACAG 57.519 34.615 0.00 0.00 0.00 2.74
606 1348 8.842358 AAATATTTTCGAACTTCACTCCTACA 57.158 30.769 0.00 0.00 0.00 2.74
607 1349 9.152595 AGAAATATTTTCGAACTTCACTCCTAC 57.847 33.333 0.00 0.00 0.00 3.18
608 1350 9.151471 CAGAAATATTTTCGAACTTCACTCCTA 57.849 33.333 0.00 0.00 0.00 2.94
609 1351 7.878127 TCAGAAATATTTTCGAACTTCACTCCT 59.122 33.333 0.00 0.00 0.00 3.69
610 1352 8.029642 TCAGAAATATTTTCGAACTTCACTCC 57.970 34.615 0.00 0.00 0.00 3.85
611 1353 9.483062 CATCAGAAATATTTTCGAACTTCACTC 57.517 33.333 0.00 0.00 0.00 3.51
612 1354 7.965107 GCATCAGAAATATTTTCGAACTTCACT 59.035 33.333 0.00 0.00 0.00 3.41
613 1355 7.750458 TGCATCAGAAATATTTTCGAACTTCAC 59.250 33.333 0.00 0.00 0.00 3.18
614 1356 7.815641 TGCATCAGAAATATTTTCGAACTTCA 58.184 30.769 0.00 0.00 0.00 3.02
615 1357 7.044445 GCTGCATCAGAAATATTTTCGAACTTC 60.044 37.037 0.00 0.00 32.44 3.01
616 1358 6.749118 GCTGCATCAGAAATATTTTCGAACTT 59.251 34.615 0.00 0.00 32.44 2.66
617 1359 6.127925 TGCTGCATCAGAAATATTTTCGAACT 60.128 34.615 0.00 0.00 32.44 3.01
618 1360 6.029607 TGCTGCATCAGAAATATTTTCGAAC 58.970 36.000 0.00 1.01 32.44 3.95
619 1361 6.193514 TGCTGCATCAGAAATATTTTCGAA 57.806 33.333 0.00 0.00 32.44 3.71
620 1362 5.816449 TGCTGCATCAGAAATATTTTCGA 57.184 34.783 0.00 2.80 32.44 3.71
621 1363 7.859377 AGTAATGCTGCATCAGAAATATTTTCG 59.141 33.333 16.55 0.00 32.44 3.46
622 1364 9.525409 AAGTAATGCTGCATCAGAAATATTTTC 57.475 29.630 16.55 0.00 32.44 2.29
625 1367 8.295288 GCTAAGTAATGCTGCATCAGAAATATT 58.705 33.333 16.55 0.00 32.44 1.28
626 1368 7.446319 TGCTAAGTAATGCTGCATCAGAAATAT 59.554 33.333 16.55 0.00 32.44 1.28
627 1369 6.767423 TGCTAAGTAATGCTGCATCAGAAATA 59.233 34.615 16.55 0.22 32.44 1.40
628 1370 5.591472 TGCTAAGTAATGCTGCATCAGAAAT 59.409 36.000 16.55 1.28 32.44 2.17
629 1371 4.943093 TGCTAAGTAATGCTGCATCAGAAA 59.057 37.500 16.55 1.46 32.44 2.52
630 1372 4.516323 TGCTAAGTAATGCTGCATCAGAA 58.484 39.130 16.55 0.61 32.44 3.02
631 1373 4.141233 TGCTAAGTAATGCTGCATCAGA 57.859 40.909 16.55 1.59 32.44 3.27
632 1374 4.514066 TCATGCTAAGTAATGCTGCATCAG 59.486 41.667 16.55 9.20 41.65 2.90
633 1375 4.453751 TCATGCTAAGTAATGCTGCATCA 58.546 39.130 16.55 7.95 41.65 3.07
634 1376 5.180680 TGATCATGCTAAGTAATGCTGCATC 59.819 40.000 16.55 4.31 41.65 3.91
635 1377 5.067954 TGATCATGCTAAGTAATGCTGCAT 58.932 37.500 9.81 9.81 43.96 3.96
636 1378 4.453751 TGATCATGCTAAGTAATGCTGCA 58.546 39.130 4.13 4.13 38.05 4.41
637 1379 5.624344 ATGATCATGCTAAGTAATGCTGC 57.376 39.130 7.59 0.00 0.00 5.25
638 1380 6.183360 GGCTATGATCATGCTAAGTAATGCTG 60.183 42.308 18.72 0.00 0.00 4.41
639 1381 5.879223 GGCTATGATCATGCTAAGTAATGCT 59.121 40.000 18.72 0.00 0.00 3.79
640 1382 5.879223 AGGCTATGATCATGCTAAGTAATGC 59.121 40.000 18.72 6.52 0.00 3.56
641 1383 7.148289 CCAAGGCTATGATCATGCTAAGTAATG 60.148 40.741 18.72 7.58 0.00 1.90
644 1386 5.543790 TCCAAGGCTATGATCATGCTAAGTA 59.456 40.000 18.72 0.00 0.00 2.24
647 1389 4.980339 TCCAAGGCTATGATCATGCTAA 57.020 40.909 18.72 0.00 0.00 3.09
650 1392 5.227908 CAAAATCCAAGGCTATGATCATGC 58.772 41.667 18.72 17.66 0.00 4.06
706 1450 3.406764 AGACATGCTGAAGGAAAGTGTC 58.593 45.455 0.00 0.00 35.85 3.67
707 1451 3.498774 AGACATGCTGAAGGAAAGTGT 57.501 42.857 0.00 0.00 0.00 3.55
708 1452 4.070716 AGAAGACATGCTGAAGGAAAGTG 58.929 43.478 0.00 0.00 0.00 3.16
709 1453 4.363991 AGAAGACATGCTGAAGGAAAGT 57.636 40.909 0.00 0.00 0.00 2.66
710 1454 5.702349 AAAGAAGACATGCTGAAGGAAAG 57.298 39.130 0.00 0.00 0.00 2.62
711 1455 6.096705 TCAAAAAGAAGACATGCTGAAGGAAA 59.903 34.615 0.00 0.00 0.00 3.13
724 1611 4.668289 TCAAAAGCGGTCAAAAAGAAGAC 58.332 39.130 0.00 0.00 0.00 3.01
744 1962 1.704628 TGTGAATCCTTCCAAGGCTCA 59.295 47.619 0.00 3.60 46.06 4.26
756 1974 4.261031 GGCCGTATGTACAAATGTGAATCC 60.261 45.833 0.00 0.00 0.00 3.01
759 1977 3.011119 GGGCCGTATGTACAAATGTGAA 58.989 45.455 0.00 0.00 0.00 3.18
766 2846 1.140052 CAGATGGGGCCGTATGTACAA 59.860 52.381 0.00 0.00 0.00 2.41
793 2873 4.883585 TGCAATTGAGTCAAAAGTGTCTCT 59.116 37.500 10.14 0.00 39.71 3.10
794 2874 4.972440 GTGCAATTGAGTCAAAAGTGTCTC 59.028 41.667 10.14 3.51 39.52 3.36
795 2875 4.496341 CGTGCAATTGAGTCAAAAGTGTCT 60.496 41.667 10.14 0.00 0.00 3.41
796 2876 3.725740 CGTGCAATTGAGTCAAAAGTGTC 59.274 43.478 10.14 6.02 0.00 3.67
797 2877 3.489059 CCGTGCAATTGAGTCAAAAGTGT 60.489 43.478 10.14 0.00 0.00 3.55
798 2878 3.044986 CCGTGCAATTGAGTCAAAAGTG 58.955 45.455 10.14 9.56 0.00 3.16
799 2879 2.687935 ACCGTGCAATTGAGTCAAAAGT 59.312 40.909 10.14 0.00 0.00 2.66
800 2880 3.300009 GACCGTGCAATTGAGTCAAAAG 58.700 45.455 10.14 6.60 0.00 2.27
801 2881 2.286713 CGACCGTGCAATTGAGTCAAAA 60.287 45.455 10.14 0.00 0.00 2.44
802 2882 1.262950 CGACCGTGCAATTGAGTCAAA 59.737 47.619 10.14 0.00 0.00 2.69
804 2884 0.948623 CCGACCGTGCAATTGAGTCA 60.949 55.000 10.34 0.00 0.00 3.41
810 2890 1.671054 CCTGACCGACCGTGCAATT 60.671 57.895 0.00 0.00 0.00 2.32
834 2915 4.754667 GTTCGGTCGGGCCAGGTC 62.755 72.222 4.39 0.00 36.97 3.85
894 2978 0.460311 GTTGGATCGGACCAGATCGT 59.540 55.000 15.52 0.00 45.90 3.73
910 2994 0.184933 TGGTTGGTCTCTTGGGGTTG 59.815 55.000 0.00 0.00 0.00 3.77
923 3007 0.103390 GTTCGGGTTTGGTTGGTTGG 59.897 55.000 0.00 0.00 0.00 3.77
935 3019 4.052229 CGGCTCGTCTGTTCGGGT 62.052 66.667 0.00 0.00 33.45 5.28
950 3034 3.798511 GGAGGAAGGGGAAGGCGG 61.799 72.222 0.00 0.00 0.00 6.13
959 3043 3.157949 GGCCGAGGAGGAGGAAGG 61.158 72.222 0.00 0.00 45.00 3.46
961 3045 3.984186 CTGGGCCGAGGAGGAGGAA 62.984 68.421 6.92 0.00 45.00 3.36
1180 3264 3.016499 GGCGAAACCAAACGACGT 58.984 55.556 0.00 0.00 38.86 4.34
1187 3271 0.938713 CACTACAACGGCGAAACCAA 59.061 50.000 16.62 0.00 39.03 3.67
1224 3308 0.383949 GCAGAAACCCACGCTTGAAA 59.616 50.000 0.00 0.00 0.00 2.69
1240 3324 1.396996 CCACCGAACCGAATTAAGCAG 59.603 52.381 0.00 0.00 0.00 4.24
1261 3345 3.306294 CCTTGAGCTTTTGACCAATTCCC 60.306 47.826 0.00 0.00 0.00 3.97
1272 3356 3.638627 CCCAGAAAAGTCCTTGAGCTTTT 59.361 43.478 0.00 0.00 44.55 2.27
1273 3357 3.225940 CCCAGAAAAGTCCTTGAGCTTT 58.774 45.455 0.00 0.00 36.60 3.51
1274 3358 2.489802 CCCCAGAAAAGTCCTTGAGCTT 60.490 50.000 0.00 0.00 0.00 3.74
1284 3368 0.779997 ATCCACAGCCCCAGAAAAGT 59.220 50.000 0.00 0.00 0.00 2.66
1286 3370 2.291540 CCTAATCCACAGCCCCAGAAAA 60.292 50.000 0.00 0.00 0.00 2.29
1287 3371 1.284785 CCTAATCCACAGCCCCAGAAA 59.715 52.381 0.00 0.00 0.00 2.52
1337 3424 2.091112 CACGCACTCCGCTTCAGAG 61.091 63.158 0.00 0.00 41.76 3.35
1339 3426 1.073216 CTACACGCACTCCGCTTCAG 61.073 60.000 0.00 0.00 41.76 3.02
1364 3451 4.978099 AGACTTCAATCACACAACCTGAT 58.022 39.130 0.00 0.00 0.00 2.90
1423 3510 0.383231 GCACTGCAAGCAACAGAAGT 59.617 50.000 5.96 0.00 37.60 3.01
1489 3577 6.150976 TGTTGAAAGCACAATCTAAATCCGAT 59.849 34.615 0.00 0.00 32.36 4.18
1526 3614 0.463654 AAGCAGCAGAAACACCACGA 60.464 50.000 0.00 0.00 0.00 4.35
1527 3615 0.317269 CAAGCAGCAGAAACACCACG 60.317 55.000 0.00 0.00 0.00 4.94
1555 3643 0.173481 TCCACTCGCTCATTCTTCGG 59.827 55.000 0.00 0.00 0.00 4.30
1556 3644 1.135257 AGTCCACTCGCTCATTCTTCG 60.135 52.381 0.00 0.00 0.00 3.79
1595 3683 6.014327 ACAAAATGTAAAGCATCCCAGTGATT 60.014 34.615 0.00 0.00 36.67 2.57
1624 3712 2.014857 CATCAGCAACCACTCATGAGG 58.985 52.381 26.08 13.28 0.00 3.86
1635 3723 6.441093 TCCAAAATCAGATACATCAGCAAC 57.559 37.500 0.00 0.00 0.00 4.17
1794 3885 5.414454 TGGTTATTTGTGCATGAGACTAACC 59.586 40.000 0.00 14.14 38.10 2.85
1952 4043 3.274288 AGCAGCAGCCTTATTTGTAGTC 58.726 45.455 0.00 0.00 43.56 2.59
2065 4156 2.603021 TGCTTGCCTTTATGGTTTCCA 58.397 42.857 0.00 0.00 38.19 3.53
2092 4183 4.047166 AGGATAGGTGGAATGACAATCCA 58.953 43.478 8.23 8.23 44.58 3.41
2130 4221 3.033184 CCCATACATGCATTTCAAGGGT 58.967 45.455 0.00 0.00 0.00 4.34
2171 4262 7.158243 GCAGCTAAAATTGATGCATAAACTC 57.842 36.000 0.00 0.00 44.96 3.01
2213 4304 6.245115 TCATGCTCCTATTTCAATATTGCG 57.755 37.500 10.76 0.00 0.00 4.85
2312 4422 3.365364 GGCATCCACTCTTTCAAACTTCG 60.365 47.826 0.00 0.00 0.00 3.79
2376 4486 5.607477 TCGTTAGTGATTCAGGTGTTTCTT 58.393 37.500 0.00 0.00 0.00 2.52
2482 4592 3.001414 CAGAGCTCAACCACATCTTCAG 58.999 50.000 17.77 0.00 0.00 3.02
2518 4628 6.939163 AGAGTAAAGTTGAGAACATCAGCAAT 59.061 34.615 0.00 0.00 41.33 3.56
2570 4680 3.642938 TGGCCAACTGGTCATGTAC 57.357 52.632 0.61 0.00 46.36 2.90
2618 4728 0.104672 TTGGTCAGGTCTGGAAGGGA 60.105 55.000 0.00 0.00 0.00 4.20
2926 5042 8.600625 CATTTTATGAATGAGCATTGTTGAAGG 58.399 33.333 0.00 0.00 0.00 3.46
2950 5066 3.006430 CGGCTTTAGTTTCCAAAACCCAT 59.994 43.478 0.00 0.00 0.00 4.00
2983 5106 8.432013 TGTATATCAAGTAGTTCTGGCAATGAT 58.568 33.333 0.00 0.00 0.00 2.45
3042 5166 7.773149 ACTATAAATATCAGGCTCATACGGTC 58.227 38.462 0.00 0.00 0.00 4.79
3132 5256 9.567776 TTCCAGTAACAGAATTATCAGTTTTCA 57.432 29.630 0.00 0.00 36.73 2.69
3172 5296 3.244561 CCATATAGGTGGTAGTTGCCAGG 60.245 52.174 0.00 0.00 39.53 4.45
3241 5369 3.713288 TGACGACTCGAGAAAACACAAT 58.287 40.909 21.68 0.00 0.00 2.71
3242 5370 3.113322 CTGACGACTCGAGAAAACACAA 58.887 45.455 21.68 0.00 0.00 3.33
3259 5387 1.127343 AGAGGCATAGGAAGGCTGAC 58.873 55.000 0.00 0.00 42.47 3.51
3481 5612 1.386533 GGTCACCTTGATGCCTGATG 58.613 55.000 0.00 0.00 0.00 3.07
3482 5613 0.257039 GGGTCACCTTGATGCCTGAT 59.743 55.000 0.00 0.00 0.00 2.90
3483 5614 1.685224 GGGTCACCTTGATGCCTGA 59.315 57.895 0.00 0.00 0.00 3.86
3484 5615 1.746615 CGGGTCACCTTGATGCCTG 60.747 63.158 0.00 0.00 33.28 4.85
3485 5616 2.185310 GACGGGTCACCTTGATGCCT 62.185 60.000 0.00 0.00 33.28 4.75
3486 5617 1.745489 GACGGGTCACCTTGATGCC 60.745 63.158 0.00 0.00 33.28 4.40
3520 5651 3.245229 TGCACTCTGGGGTTCATAAATGT 60.245 43.478 0.00 0.00 0.00 2.71
3523 5654 3.517296 TTGCACTCTGGGGTTCATAAA 57.483 42.857 0.00 0.00 0.00 1.40
3586 5746 7.951530 ACATAAAACTTTCCAAGCAATTCTG 57.048 32.000 0.00 0.00 0.00 3.02
3590 5750 9.643693 CAGAATACATAAAACTTTCCAAGCAAT 57.356 29.630 0.00 0.00 0.00 3.56
3633 5793 2.549754 ACAAACTCAGAACAGCATTCGG 59.450 45.455 0.00 0.00 0.00 4.30
3634 5794 3.248363 TCACAAACTCAGAACAGCATTCG 59.752 43.478 0.00 0.00 0.00 3.34
3666 5826 4.754570 GCGAGCTGCATCATCTCT 57.245 55.556 1.02 0.00 45.45 3.10
3675 5835 2.435586 ACATCAGTGGCGAGCTGC 60.436 61.111 0.00 0.00 45.38 5.25
3676 5836 2.747822 GCACATCAGTGGCGAGCTG 61.748 63.158 0.00 0.00 45.98 4.24
3677 5837 2.435586 GCACATCAGTGGCGAGCT 60.436 61.111 0.00 0.00 45.98 4.09
3678 5838 2.037136 AAGCACATCAGTGGCGAGC 61.037 57.895 0.00 0.00 45.98 5.03
3679 5839 0.671472 TCAAGCACATCAGTGGCGAG 60.671 55.000 0.00 0.00 45.98 5.03
3710 5870 1.352622 ACACCTCCTCAAGCAACCCA 61.353 55.000 0.00 0.00 0.00 4.51
3790 5950 3.064931 CCATCATCGTCCATGTGATCTG 58.935 50.000 0.00 0.00 33.66 2.90
3791 5951 2.967887 TCCATCATCGTCCATGTGATCT 59.032 45.455 0.00 0.00 33.66 2.75
3840 6000 2.072298 GCATCGACCAGGCATTCTATC 58.928 52.381 0.00 0.00 0.00 2.08
3846 6006 2.202932 GACGCATCGACCAGGCAT 60.203 61.111 0.00 0.00 0.00 4.40
3853 6013 0.721718 CCAGGAAAAGACGCATCGAC 59.278 55.000 0.00 0.00 0.00 4.20
3860 6020 3.717842 TGGAACCCAGGAAAAGACG 57.282 52.632 0.00 0.00 0.00 4.18
3989 6149 5.163258 GGCCCATCATCAACTAGGGATATAG 60.163 48.000 0.00 0.00 42.25 1.31
3993 6153 1.707427 GGCCCATCATCAACTAGGGAT 59.293 52.381 0.00 0.00 42.25 3.85
3994 6154 1.140312 GGCCCATCATCAACTAGGGA 58.860 55.000 0.00 0.00 42.25 4.20
4016 6176 1.556451 GCAGGGGAAAATGGAGCATTT 59.444 47.619 0.00 0.00 44.62 2.32
4073 6234 2.101835 TAGTTTTTAGGGCGCGGCG 61.102 57.895 27.12 19.62 0.00 6.46
4074 6235 1.022982 AGTAGTTTTTAGGGCGCGGC 61.023 55.000 26.39 26.39 0.00 6.53
4075 6236 1.445871 AAGTAGTTTTTAGGGCGCGG 58.554 50.000 8.83 0.00 0.00 6.46
4076 6237 2.846693 CAAAGTAGTTTTTAGGGCGCG 58.153 47.619 0.00 0.00 0.00 6.86
4077 6238 2.592194 GCAAAGTAGTTTTTAGGGCGC 58.408 47.619 0.00 0.00 0.00 6.53
4078 6239 2.413634 CGGCAAAGTAGTTTTTAGGGCG 60.414 50.000 11.03 11.03 33.96 6.13
4079 6240 2.670229 GCGGCAAAGTAGTTTTTAGGGC 60.670 50.000 0.00 0.00 0.00 5.19
4080 6241 2.413634 CGCGGCAAAGTAGTTTTTAGGG 60.414 50.000 0.00 0.00 0.00 3.53
4081 6242 2.846693 CGCGGCAAAGTAGTTTTTAGG 58.153 47.619 0.00 0.00 0.00 2.69
4082 6243 2.239201 GCGCGGCAAAGTAGTTTTTAG 58.761 47.619 8.83 0.00 0.00 1.85
4083 6244 1.398705 CGCGCGGCAAAGTAGTTTTTA 60.399 47.619 24.84 0.00 0.00 1.52
4084 6245 0.659123 CGCGCGGCAAAGTAGTTTTT 60.659 50.000 24.84 0.00 0.00 1.94
4085 6246 1.082366 CGCGCGGCAAAGTAGTTTT 60.082 52.632 24.84 0.00 0.00 2.43
4086 6247 2.554272 CGCGCGGCAAAGTAGTTT 59.446 55.556 24.84 0.00 0.00 2.66
4087 6248 4.084888 GCGCGCGGCAAAGTAGTT 62.085 61.111 33.06 0.00 42.87 2.24
4139 6300 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
4140 6301 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
4141 6302 2.764314 ATTTTAGCGCGGCTGCTGG 61.764 57.895 22.96 1.40 46.70 4.85
4142 6303 1.584483 CATTTTAGCGCGGCTGCTG 60.584 57.895 22.96 10.42 46.70 4.41
4144 6305 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
4145 6306 1.584483 CTGCATTTTAGCGCGGCTG 60.584 57.895 8.83 0.53 40.10 4.85
4146 6307 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
4152 6313 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
4153 6314 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
4170 6331 0.927537 TGTTGTTTGTGCGAGAGTCG 59.072 50.000 0.00 0.00 43.89 4.18
4171 6332 4.641954 CATATGTTGTTTGTGCGAGAGTC 58.358 43.478 0.00 0.00 0.00 3.36
4172 6333 3.120199 GCATATGTTGTTTGTGCGAGAGT 60.120 43.478 4.29 0.00 0.00 3.24
4173 6334 3.120234 TGCATATGTTGTTTGTGCGAGAG 60.120 43.478 4.29 0.00 38.58 3.20
4174 6335 2.810852 TGCATATGTTGTTTGTGCGAGA 59.189 40.909 4.29 0.00 38.58 4.04
4175 6336 3.200294 TGCATATGTTGTTTGTGCGAG 57.800 42.857 4.29 0.00 38.58 5.03
4176 6337 3.846423 ATGCATATGTTGTTTGTGCGA 57.154 38.095 0.00 0.00 38.58 5.10
4177 6338 4.855937 TGTAATGCATATGTTGTTTGTGCG 59.144 37.500 0.00 0.00 38.58 5.34
4178 6339 6.702972 TTGTAATGCATATGTTGTTTGTGC 57.297 33.333 0.00 0.00 36.39 4.57
4179 6340 8.003224 GTGTTTGTAATGCATATGTTGTTTGTG 58.997 33.333 0.00 0.00 0.00 3.33
4180 6341 7.708322 TGTGTTTGTAATGCATATGTTGTTTGT 59.292 29.630 0.00 0.00 0.00 2.83
4181 6342 8.070007 TGTGTTTGTAATGCATATGTTGTTTG 57.930 30.769 0.00 0.00 0.00 2.93
4182 6343 8.654230 TTGTGTTTGTAATGCATATGTTGTTT 57.346 26.923 0.00 0.00 0.00 2.83
4183 6344 8.830201 ATTGTGTTTGTAATGCATATGTTGTT 57.170 26.923 0.00 0.13 0.00 2.83
4184 6345 8.087136 TGATTGTGTTTGTAATGCATATGTTGT 58.913 29.630 0.00 0.00 0.00 3.32
4185 6346 8.463456 TGATTGTGTTTGTAATGCATATGTTG 57.537 30.769 0.00 0.00 0.00 3.33
4186 6347 9.486497 TTTGATTGTGTTTGTAATGCATATGTT 57.514 25.926 0.00 0.00 0.00 2.71
4187 6348 9.486497 TTTTGATTGTGTTTGTAATGCATATGT 57.514 25.926 0.00 0.00 0.00 2.29
4190 6351 9.755804 TCTTTTTGATTGTGTTTGTAATGCATA 57.244 25.926 0.00 0.00 0.00 3.14
4191 6352 8.659925 TCTTTTTGATTGTGTTTGTAATGCAT 57.340 26.923 0.00 0.00 0.00 3.96
4192 6353 8.659925 ATCTTTTTGATTGTGTTTGTAATGCA 57.340 26.923 0.00 0.00 29.59 3.96
4193 6354 8.763356 TGATCTTTTTGATTGTGTTTGTAATGC 58.237 29.630 0.00 0.00 35.14 3.56
4197 6358 9.645059 TGTTTGATCTTTTTGATTGTGTTTGTA 57.355 25.926 0.00 0.00 35.14 2.41
4198 6359 8.442384 GTGTTTGATCTTTTTGATTGTGTTTGT 58.558 29.630 0.00 0.00 35.14 2.83
4199 6360 8.441608 TGTGTTTGATCTTTTTGATTGTGTTTG 58.558 29.630 0.00 0.00 35.14 2.93
4200 6361 8.545229 TGTGTTTGATCTTTTTGATTGTGTTT 57.455 26.923 0.00 0.00 35.14 2.83
4201 6362 8.545229 TTGTGTTTGATCTTTTTGATTGTGTT 57.455 26.923 0.00 0.00 35.14 3.32
4202 6363 8.442384 GTTTGTGTTTGATCTTTTTGATTGTGT 58.558 29.630 0.00 0.00 35.14 3.72
4203 6364 8.441608 TGTTTGTGTTTGATCTTTTTGATTGTG 58.558 29.630 0.00 0.00 35.14 3.33
4204 6365 8.545229 TGTTTGTGTTTGATCTTTTTGATTGT 57.455 26.923 0.00 0.00 35.14 2.71
4205 6366 9.823098 TTTGTTTGTGTTTGATCTTTTTGATTG 57.177 25.926 0.00 0.00 35.14 2.67
4207 6368 9.824534 GTTTTGTTTGTGTTTGATCTTTTTGAT 57.175 25.926 0.00 0.00 38.27 2.57
4208 6369 8.830580 TGTTTTGTTTGTGTTTGATCTTTTTGA 58.169 25.926 0.00 0.00 0.00 2.69
4209 6370 9.443283 TTGTTTTGTTTGTGTTTGATCTTTTTG 57.557 25.926 0.00 0.00 0.00 2.44
4212 6373 9.824534 GATTTGTTTTGTTTGTGTTTGATCTTT 57.175 25.926 0.00 0.00 0.00 2.52
4213 6374 8.997323 TGATTTGTTTTGTTTGTGTTTGATCTT 58.003 25.926 0.00 0.00 0.00 2.40
4214 6375 8.545229 TGATTTGTTTTGTTTGTGTTTGATCT 57.455 26.923 0.00 0.00 0.00 2.75
4215 6376 9.049974 GTTGATTTGTTTTGTTTGTGTTTGATC 57.950 29.630 0.00 0.00 0.00 2.92
4216 6377 8.562892 TGTTGATTTGTTTTGTTTGTGTTTGAT 58.437 25.926 0.00 0.00 0.00 2.57
4217 6378 7.919690 TGTTGATTTGTTTTGTTTGTGTTTGA 58.080 26.923 0.00 0.00 0.00 2.69
4218 6379 8.552469 TTGTTGATTTGTTTTGTTTGTGTTTG 57.448 26.923 0.00 0.00 0.00 2.93
4296 6457 9.862371 TTGTTGTGTTATTGAACTATTTGTTGT 57.138 25.926 0.00 0.00 39.30 3.32
4313 6474 9.862371 TTGTATTGTTGAACTATTTGTTGTGTT 57.138 25.926 0.00 0.00 39.30 3.32
4314 6475 9.296400 GTTGTATTGTTGAACTATTTGTTGTGT 57.704 29.630 0.00 0.00 39.30 3.72
4315 6476 9.295214 TGTTGTATTGTTGAACTATTTGTTGTG 57.705 29.630 0.00 0.00 39.30 3.33
4322 6483 9.691362 GGTTTGATGTTGTATTGTTGAACTATT 57.309 29.630 0.00 0.00 0.00 1.73
4323 6484 8.855110 TGGTTTGATGTTGTATTGTTGAACTAT 58.145 29.630 0.00 0.00 0.00 2.12
4324 6485 8.132362 GTGGTTTGATGTTGTATTGTTGAACTA 58.868 33.333 0.00 0.00 0.00 2.24
4325 6486 6.978080 GTGGTTTGATGTTGTATTGTTGAACT 59.022 34.615 0.00 0.00 0.00 3.01
4326 6487 6.754209 TGTGGTTTGATGTTGTATTGTTGAAC 59.246 34.615 0.00 0.00 0.00 3.18
4327 6488 6.867550 TGTGGTTTGATGTTGTATTGTTGAA 58.132 32.000 0.00 0.00 0.00 2.69
4328 6489 6.456795 TGTGGTTTGATGTTGTATTGTTGA 57.543 33.333 0.00 0.00 0.00 3.18
4329 6490 7.531280 TTTGTGGTTTGATGTTGTATTGTTG 57.469 32.000 0.00 0.00 0.00 3.33
4330 6491 7.168972 CGATTTGTGGTTTGATGTTGTATTGTT 59.831 33.333 0.00 0.00 0.00 2.83
4331 6492 6.640499 CGATTTGTGGTTTGATGTTGTATTGT 59.360 34.615 0.00 0.00 0.00 2.71
4332 6493 6.640499 ACGATTTGTGGTTTGATGTTGTATTG 59.360 34.615 0.00 0.00 0.00 1.90
4333 6494 6.744112 ACGATTTGTGGTTTGATGTTGTATT 58.256 32.000 0.00 0.00 0.00 1.89
4334 6495 6.325919 ACGATTTGTGGTTTGATGTTGTAT 57.674 33.333 0.00 0.00 0.00 2.29
4335 6496 5.759506 ACGATTTGTGGTTTGATGTTGTA 57.240 34.783 0.00 0.00 0.00 2.41
4336 6497 4.647424 ACGATTTGTGGTTTGATGTTGT 57.353 36.364 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.