Multiple sequence alignment - TraesCS2D01G117200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G117200 chr2D 100.000 5705 0 0 1 5705 66765694 66759990 0.000000e+00 10536.0
1 TraesCS2D01G117200 chr2D 95.455 44 2 0 1660 1703 66763954 66763911 2.850000e-08 71.3
2 TraesCS2D01G117200 chr2D 95.455 44 2 0 1741 1784 66764035 66763992 2.850000e-08 71.3
3 TraesCS2D01G117200 chr2B 94.126 2979 135 21 1787 4729 104813852 104816826 0.000000e+00 4495.0
4 TraesCS2D01G117200 chr2B 90.874 1282 67 20 484 1740 104812619 104813875 0.000000e+00 1674.0
5 TraesCS2D01G117200 chr2B 95.748 588 23 2 4798 5384 104816841 104817427 0.000000e+00 946.0
6 TraesCS2D01G117200 chr2B 94.958 357 11 5 5352 5705 104817428 104817780 2.320000e-153 553.0
7 TraesCS2D01G117200 chr2A 96.109 2416 79 9 3297 5705 68249091 68251498 0.000000e+00 3927.0
8 TraesCS2D01G117200 chr2A 90.651 1551 98 26 1787 3298 68247466 68249008 0.000000e+00 2017.0
9 TraesCS2D01G117200 chr2A 91.370 1321 49 24 440 1740 68246214 68247489 0.000000e+00 1748.0
10 TraesCS2D01G117200 chr2A 96.000 100 4 0 362 461 61487234 61487333 4.570000e-36 163.0
11 TraesCS2D01G117200 chr2A 83.152 184 10 7 121 285 68246000 68246181 1.280000e-31 148.0
12 TraesCS2D01G117200 chr2A 91.026 78 7 0 1 78 68245696 68245773 7.820000e-19 106.0
13 TraesCS2D01G117200 chr2A 97.222 36 1 0 238 273 662605589 662605554 1.720000e-05 62.1
14 TraesCS2D01G117200 chr6D 95.192 104 5 0 360 463 452121953 452122056 1.270000e-36 165.0
15 TraesCS2D01G117200 chr4B 96.040 101 4 0 365 465 28229261 28229361 1.270000e-36 165.0
16 TraesCS2D01G117200 chr4B 84.615 78 11 1 3342 3419 163800342 163800418 6.130000e-10 76.8
17 TraesCS2D01G117200 chr3D 94.340 106 6 0 362 467 613073353 613073458 4.570000e-36 163.0
18 TraesCS2D01G117200 chr3D 93.396 106 7 0 363 468 206968984 206968879 2.130000e-34 158.0
19 TraesCS2D01G117200 chr3D 79.688 128 18 7 238 360 35898321 35898197 1.020000e-12 86.1
20 TraesCS2D01G117200 chr1B 94.286 105 6 0 364 468 132296902 132296798 1.640000e-35 161.0
21 TraesCS2D01G117200 chr7A 92.105 114 7 2 359 470 203965828 203965941 5.920000e-35 159.0
22 TraesCS2D01G117200 chr7A 91.379 58 3 2 3343 3400 307110550 307110495 1.700000e-10 78.7
23 TraesCS2D01G117200 chr7D 91.892 111 9 0 365 475 119737352 119737462 7.650000e-34 156.0
24 TraesCS2D01G117200 chr5B 88.189 127 10 3 346 467 428959022 428958896 4.610000e-31 147.0
25 TraesCS2D01G117200 chr5B 89.831 59 4 2 3343 3400 202203859 202203802 2.200000e-09 75.0
26 TraesCS2D01G117200 chr6B 87.013 77 7 2 3342 3418 157604795 157604868 3.660000e-12 84.2
27 TraesCS2D01G117200 chr6B 93.103 58 2 2 3343 3400 435589741 435589686 3.660000e-12 84.2
28 TraesCS2D01G117200 chr6A 86.301 73 9 1 3342 3413 99203754 99203826 1.700000e-10 78.7
29 TraesCS2D01G117200 chr5D 92.157 51 4 0 3342 3392 30814027 30814077 7.930000e-09 73.1
30 TraesCS2D01G117200 chr5D 85.246 61 6 3 235 295 9944028 9943971 6.170000e-05 60.2
31 TraesCS2D01G117200 chr7B 83.824 68 11 0 298 365 716256318 716256385 1.330000e-06 65.8
32 TraesCS2D01G117200 chr5A 76.056 142 24 7 231 366 665776316 665776179 1.330000e-06 65.8
33 TraesCS2D01G117200 chr5A 97.222 36 1 0 238 273 570380386 570380351 1.720000e-05 62.1
34 TraesCS2D01G117200 chr3A 93.333 45 2 1 235 279 456430529 456430572 1.330000e-06 65.8
35 TraesCS2D01G117200 chr3A 93.333 45 2 1 235 279 456431751 456431708 1.330000e-06 65.8
36 TraesCS2D01G117200 chr3B 94.872 39 2 0 235 273 685076706 685076744 1.720000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G117200 chr2D 66759990 66765694 5704 True 3559.533333 10536 96.9700 1 5705 3 chr2D.!!$R1 5704
1 TraesCS2D01G117200 chr2B 104812619 104817780 5161 False 1917.000000 4495 93.9265 484 5705 4 chr2B.!!$F1 5221
2 TraesCS2D01G117200 chr2A 68245696 68251498 5802 False 1589.200000 3927 90.4616 1 5705 5 chr2A.!!$F2 5704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 771 1.068333 CCAGGTGAGACGGCATTTTTG 60.068 52.381 0.0 0.0 0.0 2.44 F
893 1102 1.073474 CATCCATCCCCTCTCCCCA 60.073 63.158 0.0 0.0 0.0 4.96 F
1887 2130 0.034477 CCTAGTTGTTGGGGCCGATT 60.034 55.000 0.0 0.0 0.0 3.34 F
2820 3102 0.681175 ATTGTTTGCTGGGTGAAGGC 59.319 50.000 0.0 0.0 0.0 4.35 F
3605 3978 1.806542 CACGTTGTTCATCCCCTCAAG 59.193 52.381 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1628 0.037046 TTCGCTTAGTCCCCGTTTCC 60.037 55.000 0.00 0.00 0.00 3.13 R
2820 3102 0.248743 TATAGACGCGACCAAAGCCG 60.249 55.000 15.93 0.00 0.00 5.52 R
3032 3315 2.092861 TCCTTGGAAACCGTTTCTGTCA 60.093 45.455 20.63 9.86 39.59 3.58 R
4050 4423 1.791662 GGTTGAACGTACCCATGCG 59.208 57.895 0.00 0.00 40.17 4.73 R
4729 5102 1.795872 GGCAAAATTAACGGCAACACC 59.204 47.619 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 214 9.725019 TTAATATATATGGCTTGAGTGTTCCTG 57.275 33.333 0.00 0.00 0.00 3.86
114 222 3.188460 GCTTGAGTGTTCCTGCGAAAATA 59.812 43.478 0.00 0.00 0.00 1.40
131 316 7.962373 TGCGAAAATAATAATGACTTCACTGTG 59.038 33.333 0.17 0.17 0.00 3.66
137 322 8.809159 ATAATAATGACTTCACTGTGATCTCG 57.191 34.615 11.86 3.68 0.00 4.04
139 324 2.239400 TGACTTCACTGTGATCTCGGT 58.761 47.619 11.86 3.36 0.00 4.69
140 325 2.229062 TGACTTCACTGTGATCTCGGTC 59.771 50.000 11.86 13.90 0.00 4.79
146 331 4.079970 TCACTGTGATCTCGGTCTAGTTT 58.920 43.478 6.36 0.00 0.00 2.66
178 367 6.040247 CCCAGAGCGCGTATTTATGATAATA 58.960 40.000 8.43 0.00 0.00 0.98
243 446 8.361889 GTGTTTCTATAGAAGACTATTCCCTCC 58.638 40.741 14.63 0.00 39.64 4.30
249 452 4.290942 AGAAGACTATTCCCTCCGTTCAT 58.709 43.478 0.00 0.00 0.00 2.57
318 521 9.445786 ACATGTTTTAGTGTTTTTATTCACTCG 57.554 29.630 0.00 0.00 42.77 4.18
319 522 9.445786 CATGTTTTAGTGTTTTTATTCACTCGT 57.554 29.630 1.08 0.00 42.77 4.18
321 524 9.843334 TGTTTTAGTGTTTTTATTCACTCGTTT 57.157 25.926 1.08 0.00 42.77 3.60
340 543 9.136952 ACTCGTTTCAATTTGTATGTAGACTAC 57.863 33.333 5.62 5.62 0.00 2.73
374 577 6.995511 TCAAAACATTTTATACTCCCTCCG 57.004 37.500 0.00 0.00 0.00 4.63
375 578 6.478129 TCAAAACATTTTATACTCCCTCCGT 58.522 36.000 0.00 0.00 0.00 4.69
376 579 6.596497 TCAAAACATTTTATACTCCCTCCGTC 59.404 38.462 0.00 0.00 0.00 4.79
377 580 4.684484 ACATTTTATACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
378 581 3.390311 ACATTTTATACTCCCTCCGTCCC 59.610 47.826 0.00 0.00 0.00 4.46
379 582 2.852714 TTTATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
380 583 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
382 585 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
385 588 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
386 589 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
387 590 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
388 591 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
389 592 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
390 593 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
391 594 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
392 595 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
393 596 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
394 597 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
395 598 3.367025 CGTCCCAAAATAAGTGACTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
396 599 4.566987 GTCCCAAAATAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
397 600 4.995487 GTCCCAAAATAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
398 601 5.469084 GTCCCAAAATAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
399 602 6.647895 GTCCCAAAATAAGTGACTCGACTTTA 59.352 38.462 0.00 0.00 37.38 1.85
400 603 7.333672 GTCCCAAAATAAGTGACTCGACTTTAT 59.666 37.037 0.00 0.00 37.38 1.40
401 604 8.533657 TCCCAAAATAAGTGACTCGACTTTATA 58.466 33.333 0.00 0.00 37.38 0.98
402 605 8.601476 CCCAAAATAAGTGACTCGACTTTATAC 58.399 37.037 0.00 0.00 37.38 1.47
403 606 9.367444 CCAAAATAAGTGACTCGACTTTATACT 57.633 33.333 0.00 0.00 37.38 2.12
406 609 9.733219 AAATAAGTGACTCGACTTTATACTAGC 57.267 33.333 0.00 0.00 37.38 3.42
407 610 8.680039 ATAAGTGACTCGACTTTATACTAGCT 57.320 34.615 0.00 0.00 37.38 3.32
408 611 7.393841 AAGTGACTCGACTTTATACTAGCTT 57.606 36.000 0.00 0.00 31.92 3.74
409 612 7.393841 AGTGACTCGACTTTATACTAGCTTT 57.606 36.000 0.00 0.00 0.00 3.51
410 613 8.503458 AGTGACTCGACTTTATACTAGCTTTA 57.497 34.615 0.00 0.00 0.00 1.85
411 614 8.614346 AGTGACTCGACTTTATACTAGCTTTAG 58.386 37.037 0.00 0.00 0.00 1.85
412 615 8.397148 GTGACTCGACTTTATACTAGCTTTAGT 58.603 37.037 0.00 0.00 0.00 2.24
413 616 9.605275 TGACTCGACTTTATACTAGCTTTAGTA 57.395 33.333 0.00 0.00 37.01 1.82
439 642 9.924650 ATAAAGTTAGTACAAAGTCGATTCACT 57.075 29.630 0.00 0.00 0.00 3.41
440 643 8.658499 AAAGTTAGTACAAAGTCGATTCACTT 57.342 30.769 0.00 0.00 38.30 3.16
441 644 9.754382 AAAGTTAGTACAAAGTCGATTCACTTA 57.246 29.630 0.00 0.00 35.45 2.24
442 645 9.924650 AAGTTAGTACAAAGTCGATTCACTTAT 57.075 29.630 0.00 0.00 35.45 1.73
443 646 9.924650 AGTTAGTACAAAGTCGATTCACTTATT 57.075 29.630 0.00 0.00 35.45 1.40
447 650 8.504005 AGTACAAAGTCGATTCACTTATTTTGG 58.496 33.333 0.00 0.00 35.45 3.28
448 651 6.677913 ACAAAGTCGATTCACTTATTTTGGG 58.322 36.000 0.00 0.00 35.45 4.12
449 652 6.488683 ACAAAGTCGATTCACTTATTTTGGGA 59.511 34.615 0.00 0.00 35.45 4.37
450 653 6.496338 AAGTCGATTCACTTATTTTGGGAC 57.504 37.500 0.00 0.00 34.70 4.46
451 654 4.630069 AGTCGATTCACTTATTTTGGGACG 59.370 41.667 0.00 0.00 0.00 4.79
452 655 3.936453 TCGATTCACTTATTTTGGGACGG 59.064 43.478 0.00 0.00 0.00 4.79
453 656 3.936453 CGATTCACTTATTTTGGGACGGA 59.064 43.478 0.00 0.00 0.00 4.69
454 657 4.034048 CGATTCACTTATTTTGGGACGGAG 59.966 45.833 0.00 0.00 0.00 4.63
455 658 3.343941 TCACTTATTTTGGGACGGAGG 57.656 47.619 0.00 0.00 0.00 4.30
456 659 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
457 660 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
458 661 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
459 662 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
460 663 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
464 667 1.200519 TGGGACGGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
509 712 3.900941 ACTAATGCTTTTGACCTTTGCG 58.099 40.909 1.00 0.00 0.00 4.85
527 730 4.408993 TGCGAATGAGCATATACATTGC 57.591 40.909 0.00 0.00 42.92 3.56
568 771 1.068333 CCAGGTGAGACGGCATTTTTG 60.068 52.381 0.00 0.00 0.00 2.44
601 804 1.613437 CCTTGTGTCATGTCAAACCCC 59.387 52.381 0.00 0.00 0.00 4.95
620 823 5.684704 ACCCCTATATCGAATATTGGCATG 58.315 41.667 0.00 0.00 36.98 4.06
622 825 4.516698 CCCTATATCGAATATTGGCATGCC 59.483 45.833 30.54 30.54 36.98 4.40
748 957 1.079819 GCGCAACTACCTCAGCTCA 60.080 57.895 0.30 0.00 0.00 4.26
794 1003 2.213499 CTCGCCAAGAACACTTCAACT 58.787 47.619 0.00 0.00 0.00 3.16
893 1102 1.073474 CATCCATCCCCTCTCCCCA 60.073 63.158 0.00 0.00 0.00 4.96
1150 1374 1.227704 TTTCTGCGCAGACCGGAAA 60.228 52.632 38.36 26.18 36.65 3.13
1153 1377 4.697756 TGCGCAGACCGGAAAGGG 62.698 66.667 9.46 6.46 46.96 3.95
1202 1427 1.728971 CTTGTCCGTTCAGATGTCTGC 59.271 52.381 5.14 0.00 43.46 4.26
1294 1519 3.181440 CCTAGCTGATCCCTAATTGCCAA 60.181 47.826 0.00 0.00 0.00 4.52
1395 1628 1.806542 CATCTTGATTTATCGGGCCCG 59.193 52.381 39.13 39.13 41.35 6.13
1453 1686 2.698855 TTCCCTGCATGTAGAAGAGC 57.301 50.000 12.93 0.00 0.00 4.09
1458 1691 5.086621 TCCCTGCATGTAGAAGAGCATATA 58.913 41.667 12.93 0.00 36.28 0.86
1464 1702 6.071952 TGCATGTAGAAGAGCATATACGATCA 60.072 38.462 0.00 0.00 31.05 2.92
1506 1747 9.494271 TTTATTCAGATATGCAGATGTTAGTCC 57.506 33.333 0.00 0.00 0.00 3.85
1507 1748 5.474578 TCAGATATGCAGATGTTAGTCCC 57.525 43.478 0.00 0.00 0.00 4.46
1508 1749 4.901250 TCAGATATGCAGATGTTAGTCCCA 59.099 41.667 0.00 0.00 0.00 4.37
1509 1750 5.366477 TCAGATATGCAGATGTTAGTCCCAA 59.634 40.000 0.00 0.00 0.00 4.12
1510 1751 6.057533 CAGATATGCAGATGTTAGTCCCAAA 58.942 40.000 0.00 0.00 0.00 3.28
1511 1752 6.017605 CAGATATGCAGATGTTAGTCCCAAAC 60.018 42.308 0.00 0.00 0.00 2.93
1512 1753 3.788227 TGCAGATGTTAGTCCCAAACT 57.212 42.857 0.00 0.00 42.33 2.66
1513 1754 3.674997 TGCAGATGTTAGTCCCAAACTC 58.325 45.455 0.00 0.00 39.55 3.01
1514 1755 3.010420 GCAGATGTTAGTCCCAAACTCC 58.990 50.000 0.00 0.00 39.55 3.85
1515 1756 3.610911 CAGATGTTAGTCCCAAACTCCC 58.389 50.000 0.00 0.00 39.55 4.30
1564 1805 5.836024 AGGGGACACACAAAAGAACTATA 57.164 39.130 0.00 0.00 0.00 1.31
1587 1829 6.757897 ATCTTGGCAGAAAATTGTATTCGA 57.242 33.333 0.00 0.00 30.76 3.71
1588 1830 6.182039 TCTTGGCAGAAAATTGTATTCGAG 57.818 37.500 0.00 0.00 32.04 4.04
1592 1834 6.148948 TGGCAGAAAATTGTATTCGAGTTTG 58.851 36.000 0.00 0.00 32.04 2.93
1595 1837 7.358352 GGCAGAAAATTGTATTCGAGTTTGTTG 60.358 37.037 0.00 0.00 32.04 3.33
1601 1843 8.782533 AATTGTATTCGAGTTTGTTGTTTCTC 57.217 30.769 0.00 0.00 0.00 2.87
1603 1845 3.313274 TTCGAGTTTGTTGTTTCTCGC 57.687 42.857 8.27 0.00 45.89 5.03
1606 1848 2.599848 CGAGTTTGTTGTTTCTCGCCTG 60.600 50.000 0.00 0.00 41.98 4.85
1608 1850 2.354821 AGTTTGTTGTTTCTCGCCTGAC 59.645 45.455 0.00 0.00 0.00 3.51
1644 1886 4.332268 GGAGAGAAATGTCTGATGTGAAGC 59.668 45.833 0.00 0.00 32.80 3.86
1665 1907 3.568093 GCGGTTGCAGTGATTTTGT 57.432 47.368 0.00 0.00 42.15 2.83
1682 1924 7.222031 GTGATTTTGTTACCAAACTTTCTGTCC 59.778 37.037 0.00 0.00 40.19 4.02
1692 1934 1.134220 ACTTTCTGTCCGAAGCAACCA 60.134 47.619 0.00 0.00 32.21 3.67
1704 1946 4.025813 CCGAAGCAACCAAAGAAACAAATG 60.026 41.667 0.00 0.00 0.00 2.32
1716 1959 5.971895 AGAAACAAATGTTGATGTGTTGC 57.028 34.783 0.00 0.00 38.84 4.17
1740 1983 6.479001 GCTTACACTTGTTGTCTCTGACTTAA 59.521 38.462 0.00 0.00 39.91 1.85
1741 1984 7.171678 GCTTACACTTGTTGTCTCTGACTTAAT 59.828 37.037 0.00 0.00 39.91 1.40
1742 1985 8.958119 TTACACTTGTTGTCTCTGACTTAATT 57.042 30.769 0.00 0.00 39.91 1.40
1743 1986 7.865706 ACACTTGTTGTCTCTGACTTAATTT 57.134 32.000 0.00 0.00 29.79 1.82
1744 1987 8.281212 ACACTTGTTGTCTCTGACTTAATTTT 57.719 30.769 0.00 0.00 29.79 1.82
1745 1988 9.391006 ACACTTGTTGTCTCTGACTTAATTTTA 57.609 29.630 0.00 0.00 29.79 1.52
1750 1993 8.999431 TGTTGTCTCTGACTTAATTTTATCACC 58.001 33.333 0.00 0.00 33.15 4.02
1751 1994 8.999431 GTTGTCTCTGACTTAATTTTATCACCA 58.001 33.333 0.00 0.00 33.15 4.17
1752 1995 9.567776 TTGTCTCTGACTTAATTTTATCACCAA 57.432 29.630 0.00 0.00 33.15 3.67
1753 1996 9.567776 TGTCTCTGACTTAATTTTATCACCAAA 57.432 29.630 0.00 0.00 33.15 3.28
1754 1997 9.827411 GTCTCTGACTTAATTTTATCACCAAAC 57.173 33.333 0.00 0.00 0.00 2.93
1755 1998 9.793259 TCTCTGACTTAATTTTATCACCAAACT 57.207 29.630 0.00 0.00 0.00 2.66
1763 2006 9.974980 TTAATTTTATCACCAAACTTTCTGTCC 57.025 29.630 0.00 0.00 0.00 4.02
1764 2007 5.682943 TTTATCACCAAACTTTCTGTCCG 57.317 39.130 0.00 0.00 0.00 4.79
1765 2008 2.992124 TCACCAAACTTTCTGTCCGA 57.008 45.000 0.00 0.00 0.00 4.55
1766 2009 3.269538 TCACCAAACTTTCTGTCCGAA 57.730 42.857 0.00 0.00 0.00 4.30
1767 2010 3.202906 TCACCAAACTTTCTGTCCGAAG 58.797 45.455 0.00 0.00 32.21 3.79
1768 2011 1.947456 ACCAAACTTTCTGTCCGAAGC 59.053 47.619 0.00 0.00 32.21 3.86
1769 2012 1.946768 CCAAACTTTCTGTCCGAAGCA 59.053 47.619 0.00 0.00 32.21 3.91
1770 2013 2.357637 CCAAACTTTCTGTCCGAAGCAA 59.642 45.455 0.00 0.00 32.21 3.91
1771 2014 3.363178 CAAACTTTCTGTCCGAAGCAAC 58.637 45.455 0.00 0.00 32.21 4.17
1772 2015 1.594331 ACTTTCTGTCCGAAGCAACC 58.406 50.000 0.00 0.00 32.21 3.77
1773 2016 1.134220 ACTTTCTGTCCGAAGCAACCA 60.134 47.619 0.00 0.00 32.21 3.67
1774 2017 1.946768 CTTTCTGTCCGAAGCAACCAA 59.053 47.619 0.00 0.00 32.21 3.67
1775 2018 2.045561 TTCTGTCCGAAGCAACCAAA 57.954 45.000 0.00 0.00 0.00 3.28
1776 2019 1.593196 TCTGTCCGAAGCAACCAAAG 58.407 50.000 0.00 0.00 0.00 2.77
1777 2020 1.140052 TCTGTCCGAAGCAACCAAAGA 59.860 47.619 0.00 0.00 0.00 2.52
1778 2021 1.946768 CTGTCCGAAGCAACCAAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
1779 2022 2.357637 CTGTCCGAAGCAACCAAAGAAA 59.642 45.455 0.00 0.00 0.00 2.52
1780 2023 2.098443 TGTCCGAAGCAACCAAAGAAAC 59.902 45.455 0.00 0.00 0.00 2.78
1781 2024 2.098443 GTCCGAAGCAACCAAAGAAACA 59.902 45.455 0.00 0.00 0.00 2.83
1782 2025 2.755655 TCCGAAGCAACCAAAGAAACAA 59.244 40.909 0.00 0.00 0.00 2.83
1783 2026 3.193691 TCCGAAGCAACCAAAGAAACAAA 59.806 39.130 0.00 0.00 0.00 2.83
1784 2027 3.305897 CCGAAGCAACCAAAGAAACAAAC 59.694 43.478 0.00 0.00 0.00 2.93
1785 2028 3.923461 CGAAGCAACCAAAGAAACAAACA 59.077 39.130 0.00 0.00 0.00 2.83
1786 2029 4.566360 CGAAGCAACCAAAGAAACAAACAT 59.434 37.500 0.00 0.00 0.00 2.71
1787 2030 5.063312 CGAAGCAACCAAAGAAACAAACATT 59.937 36.000 0.00 0.00 0.00 2.71
1788 2031 6.402011 CGAAGCAACCAAAGAAACAAACATTT 60.402 34.615 0.00 0.00 0.00 2.32
1789 2032 7.201478 CGAAGCAACCAAAGAAACAAACATTTA 60.201 33.333 0.00 0.00 0.00 1.40
1790 2033 7.302350 AGCAACCAAAGAAACAAACATTTAC 57.698 32.000 0.00 0.00 0.00 2.01
1791 2034 6.876257 AGCAACCAAAGAAACAAACATTTACA 59.124 30.769 0.00 0.00 0.00 2.41
1792 2035 6.958752 GCAACCAAAGAAACAAACATTTACAC 59.041 34.615 0.00 0.00 0.00 2.90
1793 2036 7.148490 GCAACCAAAGAAACAAACATTTACACT 60.148 33.333 0.00 0.00 0.00 3.55
1794 2037 8.716909 CAACCAAAGAAACAAACATTTACACTT 58.283 29.630 0.00 0.00 0.00 3.16
1795 2038 8.250538 ACCAAAGAAACAAACATTTACACTTG 57.749 30.769 0.00 0.00 0.00 3.16
1796 2039 7.875554 ACCAAAGAAACAAACATTTACACTTGT 59.124 29.630 0.00 0.00 33.51 3.16
1797 2040 8.716909 CCAAAGAAACAAACATTTACACTTGTT 58.283 29.630 0.00 0.00 42.30 2.83
1801 2044 9.705290 AGAAACAAACATTTACACTTGTTTTCT 57.295 25.926 11.72 8.42 46.55 2.52
1802 2045 9.952341 GAAACAAACATTTACACTTGTTTTCTC 57.048 29.630 11.72 0.00 46.55 2.87
1803 2046 9.705290 AAACAAACATTTACACTTGTTTTCTCT 57.295 25.926 6.06 0.00 45.15 3.10
1804 2047 8.687824 ACAAACATTTACACTTGTTTTCTCTG 57.312 30.769 0.00 0.00 41.90 3.35
1805 2048 8.519526 ACAAACATTTACACTTGTTTTCTCTGA 58.480 29.630 0.00 0.00 41.90 3.27
1806 2049 8.798153 CAAACATTTACACTTGTTTTCTCTGAC 58.202 33.333 0.00 0.00 41.90 3.51
1807 2050 7.865706 ACATTTACACTTGTTTTCTCTGACT 57.134 32.000 0.00 0.00 0.00 3.41
1808 2051 7.697691 ACATTTACACTTGTTTTCTCTGACTG 58.302 34.615 0.00 0.00 0.00 3.51
1809 2052 7.552687 ACATTTACACTTGTTTTCTCTGACTGA 59.447 33.333 0.00 0.00 0.00 3.41
1810 2053 8.562892 CATTTACACTTGTTTTCTCTGACTGAT 58.437 33.333 0.00 0.00 0.00 2.90
1813 2056 5.529060 ACACTTGTTTTCTCTGACTGATTCC 59.471 40.000 0.00 0.00 0.00 3.01
1821 2064 3.107601 CTCTGACTGATTCCTTGGGGTA 58.892 50.000 0.00 0.00 0.00 3.69
1826 2069 3.454812 GACTGATTCCTTGGGGTAGCTAA 59.545 47.826 0.00 0.00 0.00 3.09
1828 2071 4.141390 ACTGATTCCTTGGGGTAGCTAATG 60.141 45.833 0.00 0.00 0.00 1.90
1835 2078 0.818040 GGGGTAGCTAATGGGTTGCG 60.818 60.000 0.00 0.00 0.00 4.85
1838 2081 1.296727 GTAGCTAATGGGTTGCGTCC 58.703 55.000 0.00 0.00 0.00 4.79
1841 2084 0.392461 GCTAATGGGTTGCGTCCAGA 60.392 55.000 0.00 0.00 37.75 3.86
1843 2086 1.942657 CTAATGGGTTGCGTCCAGATG 59.057 52.381 0.00 0.00 37.75 2.90
1844 2087 0.327924 AATGGGTTGCGTCCAGATGA 59.672 50.000 0.00 0.00 37.75 2.92
1845 2088 0.327924 ATGGGTTGCGTCCAGATGAA 59.672 50.000 0.00 0.00 37.75 2.57
1854 2097 6.321717 GTTGCGTCCAGATGAATTGAATTAA 58.678 36.000 0.00 0.00 0.00 1.40
1869 2112 7.686438 ATTGAATTAAATTTCACCCTTTGCC 57.314 32.000 0.00 0.00 35.42 4.52
1871 2114 7.546250 TGAATTAAATTTCACCCTTTGCCTA 57.454 32.000 0.00 0.00 30.82 3.93
1887 2130 0.034477 CCTAGTTGTTGGGGCCGATT 60.034 55.000 0.00 0.00 0.00 3.34
1888 2131 1.615919 CCTAGTTGTTGGGGCCGATTT 60.616 52.381 0.00 0.00 0.00 2.17
1890 2133 1.541379 AGTTGTTGGGGCCGATTTAC 58.459 50.000 0.00 0.00 0.00 2.01
1901 2144 2.227865 GGCCGATTTACAGTTTGAAGCA 59.772 45.455 0.00 0.00 0.00 3.91
1908 2151 1.372128 CAGTTTGAAGCAAGCGCCC 60.372 57.895 2.29 0.00 39.83 6.13
1921 2164 2.554893 CAAGCGCCCCAGTTTAGTTTTA 59.445 45.455 2.29 0.00 0.00 1.52
1922 2165 2.433436 AGCGCCCCAGTTTAGTTTTAG 58.567 47.619 2.29 0.00 0.00 1.85
1923 2166 2.156917 GCGCCCCAGTTTAGTTTTAGT 58.843 47.619 0.00 0.00 0.00 2.24
1931 2175 4.037446 CCAGTTTAGTTTTAGTTGCTGCCA 59.963 41.667 0.00 0.00 0.00 4.92
1935 2179 1.610522 AGTTTTAGTTGCTGCCAGCTG 59.389 47.619 18.96 6.78 42.97 4.24
1955 2199 2.306805 TGGAACATGCAAGTCTGATCCT 59.693 45.455 13.52 0.00 35.85 3.24
1962 2206 5.587844 ACATGCAAGTCTGATCCTTGATTAC 59.412 40.000 12.69 0.00 41.44 1.89
2034 2278 2.104451 CTCATCTACCTGCAGCCAGAAT 59.896 50.000 16.58 6.00 41.77 2.40
2050 2294 7.168637 GCAGCCAGAATTATTTTACATCACATG 59.831 37.037 0.00 0.00 0.00 3.21
2067 2331 8.570096 CATCACATGATATTGATGTTGTTTCC 57.430 34.615 13.32 0.00 42.80 3.13
2068 2332 7.943079 TCACATGATATTGATGTTGTTTCCT 57.057 32.000 0.00 0.00 31.46 3.36
2069 2333 7.764331 TCACATGATATTGATGTTGTTTCCTG 58.236 34.615 0.00 0.00 31.46 3.86
2070 2334 7.611079 TCACATGATATTGATGTTGTTTCCTGA 59.389 33.333 0.00 0.00 31.46 3.86
2071 2335 7.699391 CACATGATATTGATGTTGTTTCCTGAC 59.301 37.037 0.00 0.00 31.46 3.51
2075 2343 3.855255 TGATGTTGTTTCCTGACAGGA 57.145 42.857 20.74 20.74 44.10 3.86
2078 2346 3.855255 TGTTGTTTCCTGACAGGATGA 57.145 42.857 24.85 13.78 45.34 2.92
2083 2351 5.698741 TGTTTCCTGACAGGATGATACAT 57.301 39.130 24.85 0.00 45.34 2.29
2190 2460 9.347240 AGTTAAATTTCTCATGAGGTGATATGG 57.653 33.333 22.42 0.00 35.97 2.74
2191 2461 6.645790 AAATTTCTCATGAGGTGATATGGC 57.354 37.500 22.42 0.00 35.97 4.40
2194 2464 3.311990 TCTCATGAGGTGATATGGCACT 58.688 45.455 22.42 0.00 38.78 4.40
2195 2465 3.070590 TCTCATGAGGTGATATGGCACTG 59.929 47.826 22.42 0.00 38.78 3.66
2271 2542 3.188159 TCCATAAAGTGCCGGTGATAC 57.812 47.619 1.90 0.00 0.00 2.24
2272 2543 2.158871 TCCATAAAGTGCCGGTGATACC 60.159 50.000 1.90 0.00 34.05 2.73
2273 2544 2.158813 CCATAAAGTGCCGGTGATACCT 60.159 50.000 1.90 0.00 35.66 3.08
2318 2594 3.448660 GGTCTGCTTTTAATGGGATGCTT 59.551 43.478 0.00 0.00 0.00 3.91
2325 2601 6.550481 TGCTTTTAATGGGATGCTTATGATCA 59.450 34.615 0.00 0.00 0.00 2.92
2335 2611 7.182568 TGGGATGCTTATGATCATGAAGGTATA 59.817 37.037 18.72 0.00 0.00 1.47
2339 2620 7.341030 TGCTTATGATCATGAAGGTATATGGG 58.659 38.462 18.72 0.00 0.00 4.00
2348 2629 5.299824 TGAAGGTATATGGGGCTACCTAT 57.700 43.478 3.13 0.00 45.51 2.57
2353 2634 6.382925 AGGTATATGGGGCTACCTATGATAC 58.617 44.000 0.84 2.58 44.65 2.24
2413 2695 7.934120 ACTCAAAAGAGTAGTATCTTGCACTTT 59.066 33.333 0.00 0.00 39.47 2.66
2468 2750 4.307032 AGTGTAAATGGCAGTTCTGGAT 57.693 40.909 2.32 0.00 0.00 3.41
2506 2788 5.864474 AGAGTATTCGACAACAGATGTGAAC 59.136 40.000 0.00 0.00 44.12 3.18
2544 2826 9.770097 TCTTCAGGTCATCAAATGTTAGATATC 57.230 33.333 0.00 0.00 0.00 1.63
2571 2853 2.436417 AGCTGTTTATGCGTCATGGTT 58.564 42.857 0.00 0.00 35.28 3.67
2610 2892 6.183360 CCTTGCCTTTTATATTTCCTGGACTG 60.183 42.308 0.00 0.00 0.00 3.51
2686 2968 2.230653 TGGTGGGTGGGTCCAGATG 61.231 63.158 0.00 0.00 37.50 2.90
2766 3048 3.317150 GGCAAAGATTTTCACTTTCCGG 58.683 45.455 0.00 0.00 35.74 5.14
2809 3091 8.066000 CCAAGAATTTCAGAAAAGATTGTTTGC 58.934 33.333 0.00 0.00 0.00 3.68
2820 3102 0.681175 ATTGTTTGCTGGGTGAAGGC 59.319 50.000 0.00 0.00 0.00 4.35
2995 3278 5.278758 CCATGACGTTTCTTACCCATTTTGT 60.279 40.000 0.00 0.00 0.00 2.83
3098 3381 2.172082 TCTCATGCTAAGCCTCTTGCAT 59.828 45.455 0.00 0.00 45.57 3.96
3231 3514 4.503910 TCTCATTGTATGGTTTCCTGTCG 58.496 43.478 0.00 0.00 0.00 4.35
3239 3522 7.837202 TGTATGGTTTCCTGTCGTATAAAAG 57.163 36.000 0.00 0.00 0.00 2.27
3262 3545 4.778534 AATTCTCAGTGGTTGATTGCAG 57.221 40.909 0.00 0.00 34.68 4.41
3476 3848 4.517453 TCCTTAAGGGTCAAATCACAAACG 59.483 41.667 21.53 0.00 36.25 3.60
3552 3924 3.646162 ACATCTTAGTTATCCGCCATCCA 59.354 43.478 0.00 0.00 0.00 3.41
3605 3978 1.806542 CACGTTGTTCATCCCCTCAAG 59.193 52.381 0.00 0.00 0.00 3.02
4050 4423 3.944015 CTGATGGGGAGTCAAATCTTGTC 59.056 47.826 0.00 0.00 0.00 3.18
4105 4478 3.347216 CCATCAGTTTTGGTGTAGAGGG 58.653 50.000 0.00 0.00 33.38 4.30
4491 4864 2.234908 CGTGGACTTGAGGAGAAAGGAT 59.765 50.000 0.00 0.00 0.00 3.24
4492 4865 3.307059 CGTGGACTTGAGGAGAAAGGATT 60.307 47.826 0.00 0.00 0.00 3.01
4591 4964 2.034066 TGCCAGTACTGCTTGCCC 59.966 61.111 17.86 1.79 35.22 5.36
4598 4971 1.150308 TACTGCTTGCCCTGCACAA 59.850 52.632 0.00 0.00 38.71 3.33
4641 5014 2.035193 TGATAGAGATCGCAAGTCTGCC 59.965 50.000 0.00 0.00 46.56 4.85
4643 5016 2.510238 AGATCGCAAGTCTGCCGC 60.510 61.111 0.00 0.00 46.56 6.53
4718 5091 4.248058 CAGGTTTGAATTTGATGGCCTTC 58.752 43.478 11.69 11.69 0.00 3.46
4793 5166 0.980423 GAGGGGTGAGTGCTTCTCTT 59.020 55.000 9.94 0.00 43.13 2.85
4794 5167 0.980423 AGGGGTGAGTGCTTCTCTTC 59.020 55.000 9.94 4.74 43.13 2.87
4795 5168 0.980423 GGGGTGAGTGCTTCTCTTCT 59.020 55.000 9.94 0.00 43.13 2.85
4796 5169 1.066502 GGGGTGAGTGCTTCTCTTCTC 60.067 57.143 9.94 0.00 43.13 2.87
4801 5174 2.298446 TGAGTGCTTCTCTTCTCTGTGG 59.702 50.000 9.94 0.00 43.13 4.17
4949 5323 0.312102 GCTGTTCAACTGCTGGGAAC 59.688 55.000 11.92 17.58 39.55 3.62
4994 5368 1.990799 TCAATAACAGCGTCACTCGG 58.009 50.000 0.00 0.00 40.26 4.63
4996 5370 0.037697 AATAACAGCGTCACTCGGCA 60.038 50.000 0.00 0.00 40.26 5.69
5027 5401 5.527582 AGATCACCCACTTTGTATTTATCGC 59.472 40.000 0.00 0.00 0.00 4.58
5103 5478 8.348983 TCGAAAAAGAGTTGTCTTGTAAGTAG 57.651 34.615 0.00 0.00 42.59 2.57
5110 5485 6.722129 AGAGTTGTCTTGTAAGTAGATCCTGT 59.278 38.462 0.00 0.00 0.00 4.00
5220 5595 7.572539 GCATGGTTGTACAGACTAAAGTAAACC 60.573 40.741 0.00 0.00 34.99 3.27
5280 5656 4.781934 AGTTCTAACTGCTGTGAAAGGTT 58.218 39.130 0.00 0.00 37.98 3.50
5342 5718 6.742109 CAGAATTTGCCTCTTTTTCTCAAGA 58.258 36.000 0.00 0.00 0.00 3.02
5373 5749 9.928236 GTCAGATTTCAGTTTAGAATTCTATGC 57.072 33.333 15.82 11.35 36.57 3.14
5600 6011 7.118496 TGAAAGAACAATGTACAACCCAATT 57.882 32.000 0.00 0.00 0.00 2.32
5651 6063 5.242393 CCATCTTCAAGAGAAAGAAAAGGCA 59.758 40.000 0.00 0.00 38.06 4.75
5655 6067 3.632145 TCAAGAGAAAGAAAAGGCACCAC 59.368 43.478 0.00 0.00 0.00 4.16
5669 6081 3.555966 GGCACCACCTTCTGCTATAAAT 58.444 45.455 0.00 0.00 33.63 1.40
5670 6082 3.954258 GGCACCACCTTCTGCTATAAATT 59.046 43.478 0.00 0.00 33.63 1.82
5674 6086 6.350110 GCACCACCTTCTGCTATAAATTTTGA 60.350 38.462 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.675464 ATGCCAAATTCTTGATTAAATCAACAT 57.325 25.926 0.00 0.00 43.84 2.71
81 82 7.824289 GCAGGAACACTCAAGCCATATATATTA 59.176 37.037 0.00 0.00 0.00 0.98
91 199 0.884704 TTCGCAGGAACACTCAAGCC 60.885 55.000 0.00 0.00 0.00 4.35
93 201 3.904136 ATTTTCGCAGGAACACTCAAG 57.096 42.857 0.00 0.00 0.00 3.02
102 210 7.552687 AGTGAAGTCATTATTATTTTCGCAGGA 59.447 33.333 0.00 0.00 0.00 3.86
103 211 7.641411 CAGTGAAGTCATTATTATTTTCGCAGG 59.359 37.037 0.00 0.00 0.00 4.85
106 214 8.175069 TCACAGTGAAGTCATTATTATTTTCGC 58.825 33.333 0.00 0.00 0.00 4.70
114 222 6.045318 CCGAGATCACAGTGAAGTCATTATT 58.955 40.000 7.50 0.00 0.00 1.40
131 316 5.692654 GGCTATTGAAAACTAGACCGAGATC 59.307 44.000 0.00 0.00 0.00 2.75
137 322 5.099042 TCTGGGCTATTGAAAACTAGACC 57.901 43.478 0.00 0.00 42.62 3.85
139 324 4.680708 CGCTCTGGGCTATTGAAAACTAGA 60.681 45.833 0.00 0.00 39.13 2.43
140 325 3.557595 CGCTCTGGGCTATTGAAAACTAG 59.442 47.826 0.00 0.00 39.13 2.57
146 331 1.521457 CGCGCTCTGGGCTATTGAA 60.521 57.895 5.56 0.00 39.38 2.69
162 351 9.603298 CATGGATGCATATTATCATAAATACGC 57.397 33.333 0.00 0.00 32.57 4.42
236 439 8.656806 ACATCTTATATTTATGAACGGAGGGAA 58.343 33.333 0.00 0.00 0.00 3.97
292 495 9.445786 CGAGTGAATAAAAACACTAAAACATGT 57.554 29.630 0.00 0.00 45.54 3.21
293 496 9.445786 ACGAGTGAATAAAAACACTAAAACATG 57.554 29.630 0.00 0.00 45.54 3.21
295 498 9.843334 AAACGAGTGAATAAAAACACTAAAACA 57.157 25.926 0.00 0.00 45.54 2.83
302 505 9.618410 CAAATTGAAACGAGTGAATAAAAACAC 57.382 29.630 0.00 0.00 37.30 3.32
303 506 9.360093 ACAAATTGAAACGAGTGAATAAAAACA 57.640 25.926 0.00 0.00 0.00 2.83
310 513 9.214957 TCTACATACAAATTGAAACGAGTGAAT 57.785 29.630 0.00 0.00 0.00 2.57
311 514 8.492748 GTCTACATACAAATTGAAACGAGTGAA 58.507 33.333 0.00 0.00 0.00 3.18
312 515 7.870954 AGTCTACATACAAATTGAAACGAGTGA 59.129 33.333 0.00 0.00 0.00 3.41
313 516 8.018677 AGTCTACATACAAATTGAAACGAGTG 57.981 34.615 0.00 0.00 0.00 3.51
314 517 9.136952 GTAGTCTACATACAAATTGAAACGAGT 57.863 33.333 5.07 0.00 0.00 4.18
315 518 9.135843 TGTAGTCTACATACAAATTGAAACGAG 57.864 33.333 8.70 0.00 32.89 4.18
316 519 9.647797 ATGTAGTCTACATACAAATTGAAACGA 57.352 29.630 21.60 0.00 46.90 3.85
366 569 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
368 571 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
369 572 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
370 573 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
371 574 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
372 575 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
373 576 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
374 577 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
375 578 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
376 579 5.941948 AAAGTCGAGTCACTTATTTTGGG 57.058 39.130 0.00 0.00 35.45 4.12
377 580 9.367444 AGTATAAAGTCGAGTCACTTATTTTGG 57.633 33.333 0.00 0.00 35.45 3.28
380 583 9.733219 GCTAGTATAAAGTCGAGTCACTTATTT 57.267 33.333 0.00 0.00 35.45 1.40
382 585 8.680039 AGCTAGTATAAAGTCGAGTCACTTAT 57.320 34.615 0.00 0.00 35.45 1.73
385 588 7.393841 AAAGCTAGTATAAAGTCGAGTCACT 57.606 36.000 0.00 0.00 0.00 3.41
386 589 8.397148 ACTAAAGCTAGTATAAAGTCGAGTCAC 58.603 37.037 0.00 0.00 36.56 3.67
387 590 8.503458 ACTAAAGCTAGTATAAAGTCGAGTCA 57.497 34.615 0.00 0.00 36.56 3.41
413 616 9.924650 AGTGAATCGACTTTGTACTAACTTTAT 57.075 29.630 0.00 0.00 0.00 1.40
414 617 9.754382 AAGTGAATCGACTTTGTACTAACTTTA 57.246 29.630 0.00 0.00 31.92 1.85
415 618 8.658499 AAGTGAATCGACTTTGTACTAACTTT 57.342 30.769 0.00 0.00 31.92 2.66
416 619 9.924650 ATAAGTGAATCGACTTTGTACTAACTT 57.075 29.630 0.00 0.00 37.38 2.66
417 620 9.924650 AATAAGTGAATCGACTTTGTACTAACT 57.075 29.630 0.00 0.00 37.38 2.24
421 624 8.504005 CCAAAATAAGTGAATCGACTTTGTACT 58.496 33.333 0.00 0.00 37.38 2.73
422 625 7.749126 CCCAAAATAAGTGAATCGACTTTGTAC 59.251 37.037 0.00 0.00 37.38 2.90
423 626 7.662258 TCCCAAAATAAGTGAATCGACTTTGTA 59.338 33.333 0.00 0.00 37.38 2.41
424 627 6.488683 TCCCAAAATAAGTGAATCGACTTTGT 59.511 34.615 0.00 0.00 37.38 2.83
425 628 6.801862 GTCCCAAAATAAGTGAATCGACTTTG 59.198 38.462 0.00 0.00 37.38 2.77
426 629 6.348213 CGTCCCAAAATAAGTGAATCGACTTT 60.348 38.462 0.00 0.00 37.38 2.66
427 630 5.121768 CGTCCCAAAATAAGTGAATCGACTT 59.878 40.000 0.00 0.00 39.54 3.01
428 631 4.630069 CGTCCCAAAATAAGTGAATCGACT 59.370 41.667 0.00 0.00 0.00 4.18
429 632 4.201783 CCGTCCCAAAATAAGTGAATCGAC 60.202 45.833 0.00 0.00 0.00 4.20
430 633 3.936453 CCGTCCCAAAATAAGTGAATCGA 59.064 43.478 0.00 0.00 0.00 3.59
431 634 3.936453 TCCGTCCCAAAATAAGTGAATCG 59.064 43.478 0.00 0.00 0.00 3.34
432 635 4.335594 CCTCCGTCCCAAAATAAGTGAATC 59.664 45.833 0.00 0.00 0.00 2.52
433 636 4.270008 CCTCCGTCCCAAAATAAGTGAAT 58.730 43.478 0.00 0.00 0.00 2.57
434 637 3.560453 CCCTCCGTCCCAAAATAAGTGAA 60.560 47.826 0.00 0.00 0.00 3.18
435 638 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
436 639 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
437 640 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
438 641 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
439 642 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
440 643 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
441 644 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
442 645 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
443 646 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
444 647 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
445 648 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
446 649 1.201424 ACAAATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
447 650 4.476628 TTAACAAATACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
448 651 6.997239 AAATTAACAAATACTCCCTCCGTC 57.003 37.500 0.00 0.00 0.00 4.79
449 652 8.899771 CAATAAATTAACAAATACTCCCTCCGT 58.100 33.333 0.00 0.00 0.00 4.69
450 653 7.860872 GCAATAAATTAACAAATACTCCCTCCG 59.139 37.037 0.00 0.00 0.00 4.63
451 654 8.691797 TGCAATAAATTAACAAATACTCCCTCC 58.308 33.333 0.00 0.00 0.00 4.30
478 681 7.448469 AGGTCAAAAGCATTAGTTCATACAGTT 59.552 33.333 0.00 0.00 0.00 3.16
481 684 7.759489 AAGGTCAAAAGCATTAGTTCATACA 57.241 32.000 0.00 0.00 0.00 2.29
482 685 7.062255 GCAAAGGTCAAAAGCATTAGTTCATAC 59.938 37.037 0.00 0.00 0.00 2.39
509 712 4.452114 TCGGTGCAATGTATATGCTCATTC 59.548 41.667 0.00 0.00 44.14 2.67
524 727 3.218453 TCTTTTGAATCCTTCGGTGCAA 58.782 40.909 0.00 0.00 0.00 4.08
527 730 4.941263 TGGTATCTTTTGAATCCTTCGGTG 59.059 41.667 0.00 0.00 0.00 4.94
568 771 0.321653 CACAAGGCTGGACAGGTACC 60.322 60.000 2.73 2.73 0.00 3.34
601 804 6.932356 AAGGCATGCCAATATTCGATATAG 57.068 37.500 37.18 0.00 38.92 1.31
620 823 2.546162 GGGATTGCTCGTAGTCTAAGGC 60.546 54.545 0.00 0.00 0.00 4.35
622 825 4.386867 TTGGGATTGCTCGTAGTCTAAG 57.613 45.455 0.00 0.00 0.00 2.18
748 957 2.433446 CTGGTGGCCAGTTGAGCT 59.567 61.111 5.11 0.00 45.82 4.09
794 1003 9.190858 GCAAATTTCGTGAATATTATAATGGCA 57.809 29.630 8.28 0.00 0.00 4.92
908 1117 0.382515 CCGGCGTGGAAAGTGAAAAA 59.617 50.000 6.01 0.00 42.00 1.94
1150 1374 3.011032 AGAATGACCAAAAGATCAGCCCT 59.989 43.478 0.00 0.00 0.00 5.19
1152 1376 4.012374 TCAGAATGACCAAAAGATCAGCC 58.988 43.478 0.00 0.00 42.56 4.85
1202 1427 9.073368 CAATGCTCAGAAATCACTAAAAATCAG 57.927 33.333 0.00 0.00 0.00 2.90
1395 1628 0.037046 TTCGCTTAGTCCCCGTTTCC 60.037 55.000 0.00 0.00 0.00 3.13
1438 1671 5.703876 TCGTATATGCTCTTCTACATGCAG 58.296 41.667 0.00 0.00 38.87 4.41
1453 1686 7.472543 TGAATCATCTACCGTGATCGTATATG 58.527 38.462 0.00 0.00 35.35 1.78
1458 1691 4.855715 ATGAATCATCTACCGTGATCGT 57.144 40.909 0.00 0.00 35.35 3.73
1464 1702 9.784531 ATCTGAATAAAATGAATCATCTACCGT 57.215 29.630 0.00 0.00 0.00 4.83
1564 1805 6.375455 ACTCGAATACAATTTTCTGCCAAGAT 59.625 34.615 0.00 0.00 30.72 2.40
1587 1829 2.354821 GTCAGGCGAGAAACAACAAACT 59.645 45.455 0.00 0.00 0.00 2.66
1588 1830 2.716398 GTCAGGCGAGAAACAACAAAC 58.284 47.619 0.00 0.00 0.00 2.93
1592 1834 0.935196 AACGTCAGGCGAGAAACAAC 59.065 50.000 0.00 0.00 44.77 3.32
1595 1837 1.204312 GCAACGTCAGGCGAGAAAC 59.796 57.895 0.00 0.00 44.77 2.78
1602 1844 1.082756 CTTTCACGCAACGTCAGGC 60.083 57.895 0.00 0.00 38.32 4.85
1603 1845 1.569493 CCTTTCACGCAACGTCAGG 59.431 57.895 0.00 0.00 38.32 3.86
1606 1848 0.599204 TCTCCCTTTCACGCAACGTC 60.599 55.000 0.00 0.00 38.32 4.34
1608 1850 0.319555 TCTCTCCCTTTCACGCAACG 60.320 55.000 0.00 0.00 0.00 4.10
1665 1907 3.562557 GCTTCGGACAGAAAGTTTGGTAA 59.437 43.478 0.00 0.00 38.57 2.85
1682 1924 4.566360 ACATTTGTTTCTTTGGTTGCTTCG 59.434 37.500 0.00 0.00 0.00 3.79
1692 1934 6.594937 AGCAACACATCAACATTTGTTTCTTT 59.405 30.769 0.00 0.00 31.69 2.52
1716 1959 8.594881 ATTAAGTCAGAGACAACAAGTGTAAG 57.405 34.615 0.00 0.00 41.96 2.34
1740 1983 6.488683 TCGGACAGAAAGTTTGGTGATAAAAT 59.511 34.615 0.00 0.00 0.00 1.82
1741 1984 5.823570 TCGGACAGAAAGTTTGGTGATAAAA 59.176 36.000 0.00 0.00 0.00 1.52
1742 1985 5.369833 TCGGACAGAAAGTTTGGTGATAAA 58.630 37.500 0.00 0.00 0.00 1.40
1743 1986 4.963373 TCGGACAGAAAGTTTGGTGATAA 58.037 39.130 0.00 0.00 0.00 1.75
1744 1987 4.610605 TCGGACAGAAAGTTTGGTGATA 57.389 40.909 0.00 0.00 0.00 2.15
1745 1988 3.485463 TCGGACAGAAAGTTTGGTGAT 57.515 42.857 0.00 0.00 0.00 3.06
1746 1989 2.992124 TCGGACAGAAAGTTTGGTGA 57.008 45.000 0.00 0.00 0.00 4.02
1747 1990 2.287009 GCTTCGGACAGAAAGTTTGGTG 60.287 50.000 0.00 0.00 38.57 4.17
1748 1991 1.947456 GCTTCGGACAGAAAGTTTGGT 59.053 47.619 0.00 0.00 38.57 3.67
1749 1992 1.946768 TGCTTCGGACAGAAAGTTTGG 59.053 47.619 0.00 0.00 38.57 3.28
1750 1993 3.363178 GTTGCTTCGGACAGAAAGTTTG 58.637 45.455 0.00 0.00 38.57 2.93
1751 1994 2.357952 GGTTGCTTCGGACAGAAAGTTT 59.642 45.455 0.00 0.00 38.57 2.66
1752 1995 1.947456 GGTTGCTTCGGACAGAAAGTT 59.053 47.619 0.00 0.00 38.57 2.66
1753 1996 1.134220 TGGTTGCTTCGGACAGAAAGT 60.134 47.619 0.00 0.00 38.57 2.66
1754 1997 1.593196 TGGTTGCTTCGGACAGAAAG 58.407 50.000 0.00 0.00 38.57 2.62
1755 1998 2.045561 TTGGTTGCTTCGGACAGAAA 57.954 45.000 0.00 0.00 38.57 2.52
1756 1999 1.946768 CTTTGGTTGCTTCGGACAGAA 59.053 47.619 0.00 0.00 37.31 3.02
1757 2000 1.140052 TCTTTGGTTGCTTCGGACAGA 59.860 47.619 0.00 0.00 0.00 3.41
1758 2001 1.593196 TCTTTGGTTGCTTCGGACAG 58.407 50.000 0.00 0.00 0.00 3.51
1759 2002 2.045561 TTCTTTGGTTGCTTCGGACA 57.954 45.000 0.00 0.00 0.00 4.02
1760 2003 2.098443 TGTTTCTTTGGTTGCTTCGGAC 59.902 45.455 0.00 0.00 0.00 4.79
1761 2004 2.370349 TGTTTCTTTGGTTGCTTCGGA 58.630 42.857 0.00 0.00 0.00 4.55
1762 2005 2.861462 TGTTTCTTTGGTTGCTTCGG 57.139 45.000 0.00 0.00 0.00 4.30
1763 2006 3.923461 TGTTTGTTTCTTTGGTTGCTTCG 59.077 39.130 0.00 0.00 0.00 3.79
1764 2007 6.421377 AATGTTTGTTTCTTTGGTTGCTTC 57.579 33.333 0.00 0.00 0.00 3.86
1765 2008 6.816134 AAATGTTTGTTTCTTTGGTTGCTT 57.184 29.167 0.00 0.00 0.00 3.91
1766 2009 6.876257 TGTAAATGTTTGTTTCTTTGGTTGCT 59.124 30.769 0.00 0.00 0.00 3.91
1767 2010 6.958752 GTGTAAATGTTTGTTTCTTTGGTTGC 59.041 34.615 0.00 0.00 0.00 4.17
1768 2011 8.250538 AGTGTAAATGTTTGTTTCTTTGGTTG 57.749 30.769 0.00 0.00 0.00 3.77
1769 2012 8.716909 CAAGTGTAAATGTTTGTTTCTTTGGTT 58.283 29.630 0.00 0.00 0.00 3.67
1770 2013 7.875554 ACAAGTGTAAATGTTTGTTTCTTTGGT 59.124 29.630 0.00 0.00 30.05 3.67
1771 2014 8.250538 ACAAGTGTAAATGTTTGTTTCTTTGG 57.749 30.769 0.00 0.00 30.05 3.28
1775 2018 9.705290 AGAAAACAAGTGTAAATGTTTGTTTCT 57.295 25.926 12.75 9.64 46.89 2.52
1776 2019 9.952341 GAGAAAACAAGTGTAAATGTTTGTTTC 57.048 29.630 12.75 8.09 46.89 2.78
1778 2021 9.139174 CAGAGAAAACAAGTGTAAATGTTTGTT 57.861 29.630 4.82 0.00 46.09 2.83
1779 2022 8.519526 TCAGAGAAAACAAGTGTAAATGTTTGT 58.480 29.630 4.82 0.00 46.09 2.83
1780 2023 8.798153 GTCAGAGAAAACAAGTGTAAATGTTTG 58.202 33.333 4.82 0.00 46.09 2.93
1782 2025 8.184192 CAGTCAGAGAAAACAAGTGTAAATGTT 58.816 33.333 0.00 0.00 41.31 2.71
1783 2026 7.552687 TCAGTCAGAGAAAACAAGTGTAAATGT 59.447 33.333 0.00 0.00 0.00 2.71
1784 2027 7.919690 TCAGTCAGAGAAAACAAGTGTAAATG 58.080 34.615 0.00 0.00 0.00 2.32
1785 2028 8.682936 ATCAGTCAGAGAAAACAAGTGTAAAT 57.317 30.769 0.00 0.00 0.00 1.40
1786 2029 8.506168 AATCAGTCAGAGAAAACAAGTGTAAA 57.494 30.769 0.00 0.00 0.00 2.01
1787 2030 7.226720 GGAATCAGTCAGAGAAAACAAGTGTAA 59.773 37.037 0.00 0.00 0.00 2.41
1788 2031 6.706270 GGAATCAGTCAGAGAAAACAAGTGTA 59.294 38.462 0.00 0.00 0.00 2.90
1789 2032 5.529060 GGAATCAGTCAGAGAAAACAAGTGT 59.471 40.000 0.00 0.00 0.00 3.55
1790 2033 5.762218 AGGAATCAGTCAGAGAAAACAAGTG 59.238 40.000 0.00 0.00 0.00 3.16
1791 2034 5.934781 AGGAATCAGTCAGAGAAAACAAGT 58.065 37.500 0.00 0.00 0.00 3.16
1792 2035 6.293845 CCAAGGAATCAGTCAGAGAAAACAAG 60.294 42.308 0.00 0.00 0.00 3.16
1793 2036 5.532406 CCAAGGAATCAGTCAGAGAAAACAA 59.468 40.000 0.00 0.00 0.00 2.83
1794 2037 5.065914 CCAAGGAATCAGTCAGAGAAAACA 58.934 41.667 0.00 0.00 0.00 2.83
1795 2038 4.457257 CCCAAGGAATCAGTCAGAGAAAAC 59.543 45.833 0.00 0.00 0.00 2.43
1796 2039 4.507335 CCCCAAGGAATCAGTCAGAGAAAA 60.507 45.833 0.00 0.00 33.47 2.29
1797 2040 3.009473 CCCCAAGGAATCAGTCAGAGAAA 59.991 47.826 0.00 0.00 33.47 2.52
1798 2041 2.573462 CCCCAAGGAATCAGTCAGAGAA 59.427 50.000 0.00 0.00 33.47 2.87
1799 2042 2.191400 CCCCAAGGAATCAGTCAGAGA 58.809 52.381 0.00 0.00 33.47 3.10
1800 2043 1.912043 ACCCCAAGGAATCAGTCAGAG 59.088 52.381 0.00 0.00 36.73 3.35
1801 2044 2.044793 ACCCCAAGGAATCAGTCAGA 57.955 50.000 0.00 0.00 36.73 3.27
1802 2045 2.420687 GCTACCCCAAGGAATCAGTCAG 60.421 54.545 0.00 0.00 36.73 3.51
1803 2046 1.559682 GCTACCCCAAGGAATCAGTCA 59.440 52.381 0.00 0.00 36.73 3.41
1804 2047 1.840635 AGCTACCCCAAGGAATCAGTC 59.159 52.381 0.00 0.00 36.73 3.51
1805 2048 1.972588 AGCTACCCCAAGGAATCAGT 58.027 50.000 0.00 0.00 36.73 3.41
1806 2049 4.392940 CATTAGCTACCCCAAGGAATCAG 58.607 47.826 0.00 0.00 36.73 2.90
1807 2050 3.138283 CCATTAGCTACCCCAAGGAATCA 59.862 47.826 0.00 0.00 36.73 2.57
1808 2051 3.498661 CCCATTAGCTACCCCAAGGAATC 60.499 52.174 0.00 0.00 36.73 2.52
1809 2052 2.447047 CCCATTAGCTACCCCAAGGAAT 59.553 50.000 0.00 0.00 36.73 3.01
1810 2053 1.850345 CCCATTAGCTACCCCAAGGAA 59.150 52.381 0.00 0.00 36.73 3.36
1813 2056 2.654863 CAACCCATTAGCTACCCCAAG 58.345 52.381 0.00 0.00 0.00 3.61
1821 2064 0.392998 CTGGACGCAACCCATTAGCT 60.393 55.000 0.00 0.00 32.49 3.32
1826 2069 0.327924 TTCATCTGGACGCAACCCAT 59.672 50.000 0.00 0.00 32.49 4.00
1828 2071 1.133025 CAATTCATCTGGACGCAACCC 59.867 52.381 0.00 0.00 0.00 4.11
1838 2081 9.880157 AGGGTGAAATTTAATTCAATTCATCTG 57.120 29.630 0.00 0.00 40.76 2.90
1843 2086 8.236586 GGCAAAGGGTGAAATTTAATTCAATTC 58.763 33.333 0.00 0.00 40.76 2.17
1844 2087 7.944000 AGGCAAAGGGTGAAATTTAATTCAATT 59.056 29.630 0.00 0.00 40.76 2.32
1845 2088 7.460910 AGGCAAAGGGTGAAATTTAATTCAAT 58.539 30.769 0.00 0.00 40.76 2.57
1854 2097 4.223144 ACAACTAGGCAAAGGGTGAAATT 58.777 39.130 0.00 0.00 0.00 1.82
1869 2112 1.834188 AAATCGGCCCCAACAACTAG 58.166 50.000 0.00 0.00 0.00 2.57
1871 2114 1.202952 TGTAAATCGGCCCCAACAACT 60.203 47.619 0.00 0.00 0.00 3.16
1887 2130 1.001815 GGCGCTTGCTTCAAACTGTAA 60.002 47.619 7.64 0.00 39.13 2.41
1888 2131 0.591170 GGCGCTTGCTTCAAACTGTA 59.409 50.000 7.64 0.00 39.13 2.74
1890 2133 1.372128 GGGCGCTTGCTTCAAACTG 60.372 57.895 7.64 0.00 39.13 3.16
1901 2144 1.699730 AAAACTAAACTGGGGCGCTT 58.300 45.000 7.64 0.00 0.00 4.68
1908 2151 4.037446 TGGCAGCAACTAAAACTAAACTGG 59.963 41.667 0.00 0.00 0.00 4.00
1921 2164 1.900498 GTTCCAGCTGGCAGCAACT 60.900 57.895 38.09 18.00 45.56 3.16
1922 2165 1.530013 ATGTTCCAGCTGGCAGCAAC 61.530 55.000 38.09 31.15 45.56 4.17
1923 2166 1.228644 ATGTTCCAGCTGGCAGCAA 60.229 52.632 38.09 22.77 45.56 3.91
1931 2175 1.072806 TCAGACTTGCATGTTCCAGCT 59.927 47.619 6.70 0.00 0.00 4.24
1935 2179 2.996631 AGGATCAGACTTGCATGTTCC 58.003 47.619 6.70 9.49 36.12 3.62
1972 2216 8.552296 ACAGGGAGAAACAAATATACAAGATCT 58.448 33.333 0.00 0.00 0.00 2.75
1991 2235 3.855503 TTGCAGCAGCCACAGGGAG 62.856 63.158 0.00 0.00 41.13 4.30
1995 2239 0.601558 AGAAATTGCAGCAGCCACAG 59.398 50.000 0.00 0.00 41.13 3.66
2050 2294 6.599244 TCCTGTCAGGAAACAACATCAATATC 59.401 38.462 19.75 0.00 42.51 1.63
2054 2298 4.163441 TCCTGTCAGGAAACAACATCAA 57.837 40.909 19.75 0.00 42.51 2.57
2067 2331 9.152595 CATAAATCTCATGTATCATCCTGTCAG 57.847 37.037 0.00 0.00 0.00 3.51
2068 2332 8.654094 ACATAAATCTCATGTATCATCCTGTCA 58.346 33.333 0.00 0.00 34.88 3.58
2069 2333 8.933807 CACATAAATCTCATGTATCATCCTGTC 58.066 37.037 0.00 0.00 34.88 3.51
2070 2334 8.654094 TCACATAAATCTCATGTATCATCCTGT 58.346 33.333 0.00 0.00 34.88 4.00
2071 2335 9.668497 ATCACATAAATCTCATGTATCATCCTG 57.332 33.333 0.00 0.00 34.88 3.86
2103 2373 4.081322 ACCACCGTACACTGAGAAAAAT 57.919 40.909 0.00 0.00 0.00 1.82
2108 2378 2.156917 CAGTACCACCGTACACTGAGA 58.843 52.381 3.32 0.00 46.25 3.27
2109 2379 1.884579 ACAGTACCACCGTACACTGAG 59.115 52.381 13.86 0.00 46.25 3.35
2158 2428 8.341173 CACCTCATGAGAAATTTAACTAGCATC 58.659 37.037 24.62 0.00 0.00 3.91
2188 2458 3.291584 TGTACAATGAAAACCAGTGCCA 58.708 40.909 0.00 0.00 44.07 4.92
2190 2460 6.968904 CAGATATGTACAATGAAAACCAGTGC 59.031 38.462 0.00 0.00 44.07 4.40
2191 2461 6.968904 GCAGATATGTACAATGAAAACCAGTG 59.031 38.462 0.00 0.00 45.57 3.66
2194 2464 7.362834 CCAAGCAGATATGTACAATGAAAACCA 60.363 37.037 0.00 0.00 0.00 3.67
2195 2465 6.974622 CCAAGCAGATATGTACAATGAAAACC 59.025 38.462 0.00 0.00 0.00 3.27
2246 2517 2.355756 CACCGGCACTTTATGGATCTTG 59.644 50.000 0.00 0.00 0.00 3.02
2295 2571 3.026694 GCATCCCATTAAAAGCAGACCT 58.973 45.455 0.00 0.00 0.00 3.85
2318 2594 5.972502 AGCCCCATATACCTTCATGATCATA 59.027 40.000 8.15 0.00 0.00 2.15
2335 2611 3.874374 AGGTATCATAGGTAGCCCCAT 57.126 47.619 0.00 0.00 34.66 4.00
2339 2620 5.992217 CAGAACAAAGGTATCATAGGTAGCC 59.008 44.000 0.00 0.00 0.00 3.93
2348 2629 5.010314 ACAGTCGTACAGAACAAAGGTATCA 59.990 40.000 0.00 0.00 0.00 2.15
2413 2695 6.491745 TCAAGTTGGTGGCATAAGTTGAATTA 59.508 34.615 23.67 10.39 41.01 1.40
2468 2750 4.579340 CGAATACTCTACTGCCCTAACTCA 59.421 45.833 0.00 0.00 0.00 3.41
2506 2788 2.664851 TGAAGACCTGTTGGCGCG 60.665 61.111 0.00 0.00 36.63 6.86
2544 2826 7.331934 ACCATGACGCATAAACAGCTATAATAG 59.668 37.037 0.00 0.00 0.00 1.73
2571 2853 4.657814 AGGCAAGGACCTAAAGAAATGA 57.342 40.909 0.00 0.00 38.67 2.57
2610 2892 9.525409 AAGCTTTCTTGAATGCAAATATCATAC 57.475 29.630 18.79 0.00 32.73 2.39
2649 2931 7.617723 ACCCACCAGAAAAACATTAGCATATAA 59.382 33.333 0.00 0.00 0.00 0.98
2686 2968 4.271291 GCTTGAACTACGAGAATTGGATCC 59.729 45.833 4.20 4.20 31.94 3.36
2809 3091 2.282462 AAAGCCGCCTTCACCCAG 60.282 61.111 0.00 0.00 0.00 4.45
2820 3102 0.248743 TATAGACGCGACCAAAGCCG 60.249 55.000 15.93 0.00 0.00 5.52
2823 3105 3.550678 GTCCTTTATAGACGCGACCAAAG 59.449 47.826 15.93 15.72 0.00 2.77
2832 3114 5.515797 TCTCCATGTGTCCTTTATAGACG 57.484 43.478 0.00 0.00 37.04 4.18
2995 3278 5.123820 GCAATAACCTGCTAAATGACACAGA 59.876 40.000 0.00 0.00 39.34 3.41
3032 3315 2.092861 TCCTTGGAAACCGTTTCTGTCA 60.093 45.455 20.63 9.86 39.59 3.58
3071 3354 2.433970 GAGGCTTAGCATGAGAACCTCT 59.566 50.000 6.53 0.00 39.30 3.69
3239 3522 5.182001 ACTGCAATCAACCACTGAGAATTAC 59.818 40.000 0.00 0.00 37.52 1.89
3440 3812 7.182060 TGACCCTTAAGGAAGCTGAAATAATT 58.818 34.615 23.74 0.00 39.89 1.40
3476 3848 4.494350 TGCTGAAACTGAAGCTGAAATC 57.506 40.909 0.00 0.00 40.21 2.17
3605 3978 9.171877 AGAAGAAATATGGATGACAAGTTCTTC 57.828 33.333 14.66 14.66 42.81 2.87
4050 4423 1.791662 GGTTGAACGTACCCATGCG 59.208 57.895 0.00 0.00 40.17 4.73
4105 4478 9.649167 ATGAAGAAATGAGAAAAATGTTCATCC 57.351 29.630 0.00 0.00 31.50 3.51
4209 4582 2.334946 GCCTTGCAGCAACGGATCA 61.335 57.895 21.34 0.00 0.00 2.92
4491 4864 3.847042 TCAAACTCCCCTCCTCTAGAA 57.153 47.619 0.00 0.00 0.00 2.10
4492 4865 3.336997 TCTTCAAACTCCCCTCCTCTAGA 59.663 47.826 0.00 0.00 0.00 2.43
4591 4964 2.416547 CGTAAGACTTCCCATTGTGCAG 59.583 50.000 0.00 0.00 43.02 4.41
4598 4971 2.354805 GCTTCACCGTAAGACTTCCCAT 60.355 50.000 0.00 0.00 43.02 4.00
4641 5014 4.776322 TGGGCATCGACCTTGGCG 62.776 66.667 5.14 0.00 40.34 5.69
4643 5016 2.819595 CGTGGGCATCGACCTTGG 60.820 66.667 0.00 0.00 0.00 3.61
4718 5091 4.007940 CAACACCGCCCGTTCGTG 62.008 66.667 0.00 0.00 0.00 4.35
4729 5102 1.795872 GGCAAAATTAACGGCAACACC 59.204 47.619 0.00 0.00 0.00 4.16
4801 5174 3.257127 AGAGAAGAGTGCTGGTCTGTAAC 59.743 47.826 0.00 0.00 0.00 2.50
4949 5323 2.315443 AGGCATCCTGGGAGAAAGG 58.685 57.895 0.00 0.00 36.02 3.11
4994 5368 6.058183 ACAAAGTGGGTGATCTTCTATATGC 58.942 40.000 0.00 0.00 0.00 3.14
5027 5401 7.776618 AAACCAAAGAAAACCTTATCCTAGG 57.223 36.000 0.82 0.82 41.31 3.02
5110 5485 8.174085 TGGACAAAAGGGAAAATCCTCTAATAA 58.826 33.333 0.00 0.00 36.57 1.40
5125 5500 5.566469 TCTTACAAGGTATGGACAAAAGGG 58.434 41.667 0.00 0.00 0.00 3.95
5258 5633 4.423625 ACCTTTCACAGCAGTTAGAACT 57.576 40.909 0.00 0.00 40.60 3.01
5342 5718 6.688073 TTCTAAACTGAAATCTGACCCTCT 57.312 37.500 0.00 0.00 0.00 3.69
5344 5720 7.694093 AGAATTCTAAACTGAAATCTGACCCT 58.306 34.615 6.06 0.00 35.57 4.34
5373 5749 5.468072 GCCATGAAATGTCTACTAGATGTGG 59.532 44.000 0.00 0.00 44.81 4.17
5600 6011 5.221621 GGTTCAGTTGGGGAATTTCATTCAA 60.222 40.000 0.00 0.00 41.03 2.69
5629 6041 5.242615 GGTGCCTTTTCTTTCTCTTGAAGAT 59.757 40.000 0.00 0.00 32.82 2.40
5651 6063 7.397192 ACATCAAAATTTATAGCAGAAGGTGGT 59.603 33.333 0.00 0.00 40.92 4.16
5669 6081 7.812191 GCATACAACATCCTGTTAACATCAAAA 59.188 33.333 9.13 0.00 38.77 2.44
5670 6082 7.176515 AGCATACAACATCCTGTTAACATCAAA 59.823 33.333 9.13 0.00 38.77 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.