Multiple sequence alignment - TraesCS2D01G116600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G116600 chr2D 100.000 3241 0 0 1 3241 65640487 65637247 0.000000e+00 5986.0
1 TraesCS2D01G116600 chr2D 89.412 170 14 2 4 172 318417026 318416860 9.110000e-51 211.0
2 TraesCS2D01G116600 chr2B 91.770 1944 114 31 1329 3236 105688791 105690724 0.000000e+00 2662.0
3 TraesCS2D01G116600 chr2B 90.121 992 53 20 333 1284 105687698 105688684 0.000000e+00 1247.0
4 TraesCS2D01G116600 chr2B 81.481 108 17 3 2913 3019 229779953 229780058 5.760000e-13 86.1
5 TraesCS2D01G116600 chr2A 89.244 1878 131 33 1328 3170 69203495 69205336 0.000000e+00 2283.0
6 TraesCS2D01G116600 chr2A 89.111 900 41 27 437 1284 69202497 69203391 0.000000e+00 1066.0
7 TraesCS2D01G116600 chr2A 89.412 170 15 1 6 175 63589913 63589747 9.110000e-51 211.0
8 TraesCS2D01G116600 chr3B 92.737 179 12 1 2541 2718 201616179 201616001 1.150000e-64 257.0
9 TraesCS2D01G116600 chr3B 88.125 160 19 0 182 341 349953137 349953296 1.190000e-44 191.0
10 TraesCS2D01G116600 chr3B 78.317 309 52 11 2875 3171 565726882 565726577 5.520000e-43 185.0
11 TraesCS2D01G116600 chr3B 100.000 29 0 0 3146 3174 71556164 71556136 2.000000e-03 54.7
12 TraesCS2D01G116600 chr6D 93.605 172 10 1 1 172 290813106 290813276 4.150000e-64 255.0
13 TraesCS2D01G116600 chr6D 92.179 179 13 1 2541 2718 389244599 389244777 5.370000e-63 252.0
14 TraesCS2D01G116600 chr6D 92.405 158 11 1 177 334 290813390 290813546 1.170000e-54 224.0
15 TraesCS2D01G116600 chr6D 89.941 169 14 1 4 172 1600995 1600830 7.040000e-52 215.0
16 TraesCS2D01G116600 chr6D 89.941 169 14 1 4 172 38881755 38881590 7.040000e-52 215.0
17 TraesCS2D01G116600 chr6D 89.941 169 14 1 4 172 86021461 86021296 7.040000e-52 215.0
18 TraesCS2D01G116600 chrUn 91.620 179 14 1 2541 2718 365940319 365940141 2.500000e-61 246.0
19 TraesCS2D01G116600 chr7D 91.620 179 14 1 2541 2718 231595643 231595465 2.500000e-61 246.0
20 TraesCS2D01G116600 chr7D 90.698 172 13 1 1 172 68920755 68920923 3.250000e-55 226.0
21 TraesCS2D01G116600 chr7D 91.772 158 12 1 177 334 388965779 388965623 5.440000e-53 219.0
22 TraesCS2D01G116600 chr7D 81.250 96 14 4 2924 3018 621783065 621783157 1.250000e-09 75.0
23 TraesCS2D01G116600 chr5D 91.620 179 14 1 2541 2718 432436477 432436299 2.500000e-61 246.0
24 TraesCS2D01G116600 chr5D 91.620 179 14 1 2541 2718 503246495 503246317 2.500000e-61 246.0
25 TraesCS2D01G116600 chr5D 91.620 179 14 1 2541 2718 503263553 503263731 2.500000e-61 246.0
26 TraesCS2D01G116600 chr5D 94.231 156 9 0 177 332 455610547 455610392 4.180000e-59 239.0
27 TraesCS2D01G116600 chr5D 93.038 158 11 0 177 334 22428021 22428178 6.990000e-57 231.0
28 TraesCS2D01G116600 chr5D 89.933 149 15 0 189 337 366736024 366736172 3.300000e-45 193.0
29 TraesCS2D01G116600 chr3D 91.620 179 14 1 2541 2718 589262303 589262481 2.500000e-61 246.0
30 TraesCS2D01G116600 chr1D 91.620 179 14 1 2541 2718 254380778 254380956 2.500000e-61 246.0
31 TraesCS2D01G116600 chr1D 88.272 162 16 3 176 336 433907866 433907707 1.190000e-44 191.0
32 TraesCS2D01G116600 chr4D 91.667 156 13 0 177 332 479407506 479407351 1.960000e-52 217.0
33 TraesCS2D01G116600 chr4D 89.349 169 15 1 4 172 469601871 469601706 3.280000e-50 209.0
34 TraesCS2D01G116600 chr5A 89.412 170 15 1 1 170 577922755 577922921 9.110000e-51 211.0
35 TraesCS2D01G116600 chr4B 89.404 151 14 2 188 336 520269506 520269656 4.270000e-44 189.0
36 TraesCS2D01G116600 chr6B 78.065 310 54 8 2873 3171 54892636 54892942 1.990000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G116600 chr2D 65637247 65640487 3240 True 5986.0 5986 100.0000 1 3241 1 chr2D.!!$R1 3240
1 TraesCS2D01G116600 chr2B 105687698 105690724 3026 False 1954.5 2662 90.9455 333 3236 2 chr2B.!!$F2 2903
2 TraesCS2D01G116600 chr2A 69202497 69205336 2839 False 1674.5 2283 89.1775 437 3170 2 chr2A.!!$F1 2733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.0 0.0 0.0 0.0 4.79 F
732 792 0.032912 AACCAACAAACCGAACCCCT 60.033 50.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1509 1.063417 CCCAGCATCTCCCCTGAAAAT 60.063 52.381 0.00 0.00 0.00 1.82 R
2517 2676 0.167689 GGAGAAACTCTCGTACGCGT 59.832 55.000 19.17 19.17 44.28 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.928343 CGTTTTTCGCCAAACCAGA 57.072 47.368 4.32 0.00 33.71 3.86
22 23 2.415697 CGTTTTTCGCCAAACCAGAT 57.584 45.000 4.32 0.00 33.71 2.90
23 24 2.738135 CGTTTTTCGCCAAACCAGATT 58.262 42.857 4.32 0.00 33.71 2.40
24 25 3.120041 CGTTTTTCGCCAAACCAGATTT 58.880 40.909 4.32 0.00 33.71 2.17
25 26 3.181575 CGTTTTTCGCCAAACCAGATTTC 59.818 43.478 4.32 0.00 33.71 2.17
26 27 2.697431 TTTCGCCAAACCAGATTTCG 57.303 45.000 0.00 0.00 0.00 3.46
27 28 0.878416 TTCGCCAAACCAGATTTCGG 59.122 50.000 0.00 0.00 0.00 4.30
28 29 0.035598 TCGCCAAACCAGATTTCGGA 59.964 50.000 0.00 0.00 0.00 4.55
29 30 0.447801 CGCCAAACCAGATTTCGGAG 59.552 55.000 0.00 0.00 0.00 4.63
30 31 0.811281 GCCAAACCAGATTTCGGAGG 59.189 55.000 0.00 0.00 0.00 4.30
31 32 1.613255 GCCAAACCAGATTTCGGAGGA 60.613 52.381 0.00 0.00 0.00 3.71
32 33 2.359900 CCAAACCAGATTTCGGAGGAG 58.640 52.381 0.00 0.00 0.00 3.69
33 34 2.027192 CCAAACCAGATTTCGGAGGAGA 60.027 50.000 0.00 0.00 0.00 3.71
34 35 3.559171 CCAAACCAGATTTCGGAGGAGAA 60.559 47.826 0.00 0.00 0.00 2.87
35 36 3.618690 AACCAGATTTCGGAGGAGAAG 57.381 47.619 0.00 0.00 0.00 2.85
36 37 1.834263 ACCAGATTTCGGAGGAGAAGG 59.166 52.381 0.00 0.00 0.00 3.46
37 38 1.474143 CCAGATTTCGGAGGAGAAGGC 60.474 57.143 0.00 0.00 0.00 4.35
38 39 0.461961 AGATTTCGGAGGAGAAGGCG 59.538 55.000 0.00 0.00 0.00 5.52
39 40 1.153349 ATTTCGGAGGAGAAGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
40 41 2.595009 ATTTCGGAGGAGAAGGCGCC 62.595 60.000 21.89 21.89 0.00 6.53
44 45 4.214327 GAGGAGAAGGCGCCGGAG 62.214 72.222 23.20 1.55 39.22 4.63
71 72 3.395669 CGGACTCCGCGAAAATCC 58.604 61.111 8.23 8.18 41.17 3.01
72 73 2.514013 CGGACTCCGCGAAAATCCG 61.514 63.158 20.81 20.81 45.61 4.18
73 74 1.153706 GGACTCCGCGAAAATCCGA 60.154 57.895 8.23 0.00 0.00 4.55
74 75 0.738412 GGACTCCGCGAAAATCCGAA 60.738 55.000 8.23 0.00 0.00 4.30
75 76 0.645868 GACTCCGCGAAAATCCGAAG 59.354 55.000 8.23 0.00 0.00 3.79
76 77 1.348594 CTCCGCGAAAATCCGAAGC 59.651 57.895 8.23 0.00 0.00 3.86
78 79 2.644707 CGCGAAAATCCGAAGCGC 60.645 61.111 0.00 0.00 44.19 5.92
79 80 2.277310 GCGAAAATCCGAAGCGCC 60.277 61.111 2.29 0.00 41.65 6.53
80 81 2.403586 CGAAAATCCGAAGCGCCC 59.596 61.111 2.29 0.00 0.00 6.13
81 82 2.395360 CGAAAATCCGAAGCGCCCA 61.395 57.895 2.29 0.00 0.00 5.36
82 83 1.429423 GAAAATCCGAAGCGCCCAG 59.571 57.895 2.29 0.00 0.00 4.45
83 84 1.993369 GAAAATCCGAAGCGCCCAGG 61.993 60.000 2.29 4.80 0.00 4.45
101 102 3.928769 CGGCGCATCGACATGGTG 61.929 66.667 10.83 0.00 32.52 4.17
102 103 3.576356 GGCGCATCGACATGGTGG 61.576 66.667 10.83 0.00 33.63 4.61
103 104 4.241999 GCGCATCGACATGGTGGC 62.242 66.667 0.30 0.00 0.00 5.01
109 110 3.190849 CGACATGGTGGCGCAGAG 61.191 66.667 10.83 0.00 44.33 3.35
110 111 2.821366 GACATGGTGGCGCAGAGG 60.821 66.667 10.83 0.00 0.00 3.69
137 138 4.329545 GAGTGGGCGGCCAACAGA 62.330 66.667 34.51 6.57 0.00 3.41
138 139 4.335647 AGTGGGCGGCCAACAGAG 62.336 66.667 34.51 0.00 0.00 3.35
139 140 4.643387 GTGGGCGGCCAACAGAGT 62.643 66.667 34.51 0.00 0.00 3.24
140 141 4.641645 TGGGCGGCCAACAGAGTG 62.642 66.667 30.86 0.00 0.00 3.51
141 142 4.643387 GGGCGGCCAACAGAGTGT 62.643 66.667 25.33 0.00 0.00 3.55
142 143 3.050275 GGCGGCCAACAGAGTGTC 61.050 66.667 15.62 0.00 0.00 3.67
143 144 3.414700 GCGGCCAACAGAGTGTCG 61.415 66.667 2.24 0.00 0.00 4.35
144 145 2.338620 CGGCCAACAGAGTGTCGA 59.661 61.111 2.24 0.00 0.00 4.20
145 146 1.734477 CGGCCAACAGAGTGTCGAG 60.734 63.158 2.24 0.00 0.00 4.04
146 147 1.374758 GGCCAACAGAGTGTCGAGG 60.375 63.158 0.00 0.00 0.00 4.63
147 148 1.374758 GCCAACAGAGTGTCGAGGG 60.375 63.158 0.00 0.00 0.00 4.30
148 149 1.816863 GCCAACAGAGTGTCGAGGGA 61.817 60.000 0.00 0.00 0.00 4.20
149 150 0.679505 CCAACAGAGTGTCGAGGGAA 59.320 55.000 0.00 0.00 0.00 3.97
150 151 1.605712 CCAACAGAGTGTCGAGGGAAC 60.606 57.143 0.00 0.00 0.00 3.62
151 152 0.314302 AACAGAGTGTCGAGGGAACG 59.686 55.000 0.00 0.00 0.00 3.95
152 153 1.444553 CAGAGTGTCGAGGGAACGC 60.445 63.158 0.00 0.00 0.00 4.84
153 154 1.901948 AGAGTGTCGAGGGAACGCA 60.902 57.895 0.00 0.00 0.00 5.24
154 155 1.215647 GAGTGTCGAGGGAACGCAT 59.784 57.895 0.00 0.00 0.00 4.73
155 156 0.389948 GAGTGTCGAGGGAACGCATT 60.390 55.000 0.00 0.00 0.00 3.56
156 157 0.034896 AGTGTCGAGGGAACGCATTT 59.965 50.000 0.00 0.00 0.00 2.32
157 158 0.872388 GTGTCGAGGGAACGCATTTT 59.128 50.000 0.00 0.00 0.00 1.82
158 159 1.265905 GTGTCGAGGGAACGCATTTTT 59.734 47.619 0.00 0.00 0.00 1.94
159 160 2.481185 GTGTCGAGGGAACGCATTTTTA 59.519 45.455 0.00 0.00 0.00 1.52
160 161 3.058777 GTGTCGAGGGAACGCATTTTTAA 60.059 43.478 0.00 0.00 0.00 1.52
161 162 3.754323 TGTCGAGGGAACGCATTTTTAAT 59.246 39.130 0.00 0.00 0.00 1.40
162 163 4.936411 TGTCGAGGGAACGCATTTTTAATA 59.064 37.500 0.00 0.00 0.00 0.98
163 164 5.411977 TGTCGAGGGAACGCATTTTTAATAA 59.588 36.000 0.00 0.00 0.00 1.40
164 165 5.735892 GTCGAGGGAACGCATTTTTAATAAC 59.264 40.000 0.00 0.00 0.00 1.89
165 166 4.726704 CGAGGGAACGCATTTTTAATAACG 59.273 41.667 0.00 0.00 0.00 3.18
166 167 4.417506 AGGGAACGCATTTTTAATAACGC 58.582 39.130 0.00 0.00 0.00 4.84
168 169 3.300691 GGAACGCATTTTTAATAACGCGC 60.301 43.478 16.84 0.00 46.16 6.86
169 170 1.835365 ACGCATTTTTAATAACGCGCG 59.165 42.857 30.96 30.96 46.16 6.86
170 171 1.392530 CGCATTTTTAATAACGCGCGC 60.393 47.619 32.58 23.91 35.97 6.86
171 172 1.072413 GCATTTTTAATAACGCGCGCC 60.072 47.619 32.58 8.11 0.00 6.53
172 173 2.177977 CATTTTTAATAACGCGCGCCA 58.822 42.857 32.58 18.96 0.00 5.69
173 174 2.327081 TTTTTAATAACGCGCGCCAA 57.673 40.000 32.58 16.35 0.00 4.52
174 175 1.604396 TTTTAATAACGCGCGCCAAC 58.396 45.000 32.58 0.00 0.00 3.77
175 176 0.516001 TTTAATAACGCGCGCCAACA 59.484 45.000 32.58 10.11 0.00 3.33
176 177 0.727970 TTAATAACGCGCGCCAACAT 59.272 45.000 32.58 14.08 0.00 2.71
177 178 0.727970 TAATAACGCGCGCCAACATT 59.272 45.000 32.58 21.99 0.00 2.71
178 179 0.522495 AATAACGCGCGCCAACATTC 60.522 50.000 32.58 0.00 0.00 2.67
179 180 1.366111 ATAACGCGCGCCAACATTCT 61.366 50.000 32.58 3.21 0.00 2.40
180 181 0.736672 TAACGCGCGCCAACATTCTA 60.737 50.000 32.58 4.46 0.00 2.10
181 182 1.570347 AACGCGCGCCAACATTCTAA 61.570 50.000 32.58 0.00 0.00 2.10
182 183 1.133664 CGCGCGCCAACATTCTAAA 59.866 52.632 27.72 0.00 0.00 1.85
183 184 0.453615 CGCGCGCCAACATTCTAAAA 60.454 50.000 27.72 0.00 0.00 1.52
184 185 1.692296 GCGCGCCAACATTCTAAAAA 58.308 45.000 23.24 0.00 0.00 1.94
185 186 2.258755 GCGCGCCAACATTCTAAAAAT 58.741 42.857 23.24 0.00 0.00 1.82
186 187 2.666022 GCGCGCCAACATTCTAAAAATT 59.334 40.909 23.24 0.00 0.00 1.82
187 188 3.481789 GCGCGCCAACATTCTAAAAATTG 60.482 43.478 23.24 0.00 0.00 2.32
188 189 3.481789 CGCGCCAACATTCTAAAAATTGC 60.482 43.478 0.00 0.00 0.00 3.56
189 190 3.481789 GCGCCAACATTCTAAAAATTGCG 60.482 43.478 0.00 0.00 0.00 4.85
190 191 3.481789 CGCCAACATTCTAAAAATTGCGC 60.482 43.478 0.00 0.00 0.00 6.09
191 192 3.481789 GCCAACATTCTAAAAATTGCGCG 60.482 43.478 0.00 0.00 0.00 6.86
192 193 3.481789 CCAACATTCTAAAAATTGCGCGC 60.482 43.478 27.26 27.26 0.00 6.86
193 194 1.910819 ACATTCTAAAAATTGCGCGCG 59.089 42.857 28.44 28.44 0.00 6.86
194 195 1.252524 CATTCTAAAAATTGCGCGCGG 59.747 47.619 33.06 13.66 0.00 6.46
195 196 0.517755 TTCTAAAAATTGCGCGCGGA 59.482 45.000 33.06 28.65 0.00 5.54
196 197 0.179210 TCTAAAAATTGCGCGCGGAC 60.179 50.000 33.06 16.69 0.00 4.79
197 198 0.453615 CTAAAAATTGCGCGCGGACA 60.454 50.000 33.06 19.45 0.00 4.02
198 199 0.169230 TAAAAATTGCGCGCGGACAT 59.831 45.000 33.06 20.88 0.00 3.06
199 200 1.343510 AAAAATTGCGCGCGGACATG 61.344 50.000 33.06 1.90 0.00 3.21
200 201 2.193865 AAAATTGCGCGCGGACATGA 62.194 50.000 33.06 14.75 0.00 3.07
201 202 2.193865 AAATTGCGCGCGGACATGAA 62.194 50.000 33.06 14.30 0.00 2.57
202 203 2.193865 AATTGCGCGCGGACATGAAA 62.194 50.000 33.06 13.44 0.00 2.69
203 204 1.992233 ATTGCGCGCGGACATGAAAT 61.992 50.000 33.06 15.39 0.00 2.17
214 215 1.063006 CATGAAATGGGTCTGCGCG 59.937 57.895 0.00 0.00 41.79 6.86
215 216 1.377202 ATGAAATGGGTCTGCGCGT 60.377 52.632 8.43 0.00 0.00 6.01
216 217 0.960364 ATGAAATGGGTCTGCGCGTT 60.960 50.000 8.43 0.00 38.23 4.84
217 218 1.154225 GAAATGGGTCTGCGCGTTG 60.154 57.895 8.43 0.25 36.96 4.10
218 219 2.527547 GAAATGGGTCTGCGCGTTGG 62.528 60.000 8.43 0.00 36.96 3.77
219 220 3.545124 AATGGGTCTGCGCGTTGGA 62.545 57.895 8.43 0.28 35.77 3.53
220 221 4.980805 TGGGTCTGCGCGTTGGAC 62.981 66.667 8.43 13.28 0.00 4.02
238 239 3.140814 GCCCTGCCGACCCAAATC 61.141 66.667 0.00 0.00 0.00 2.17
239 240 2.677228 CCCTGCCGACCCAAATCT 59.323 61.111 0.00 0.00 0.00 2.40
240 241 1.912220 CCCTGCCGACCCAAATCTA 59.088 57.895 0.00 0.00 0.00 1.98
241 242 0.254747 CCCTGCCGACCCAAATCTAA 59.745 55.000 0.00 0.00 0.00 2.10
242 243 1.340600 CCCTGCCGACCCAAATCTAAA 60.341 52.381 0.00 0.00 0.00 1.85
243 244 2.442413 CCTGCCGACCCAAATCTAAAA 58.558 47.619 0.00 0.00 0.00 1.52
244 245 2.423538 CCTGCCGACCCAAATCTAAAAG 59.576 50.000 0.00 0.00 0.00 2.27
245 246 3.343617 CTGCCGACCCAAATCTAAAAGA 58.656 45.455 0.00 0.00 0.00 2.52
246 247 3.343617 TGCCGACCCAAATCTAAAAGAG 58.656 45.455 0.00 0.00 0.00 2.85
247 248 2.683362 GCCGACCCAAATCTAAAAGAGG 59.317 50.000 0.00 0.00 0.00 3.69
248 249 2.683362 CCGACCCAAATCTAAAAGAGGC 59.317 50.000 0.00 0.00 0.00 4.70
249 250 2.683362 CGACCCAAATCTAAAAGAGGCC 59.317 50.000 0.00 0.00 0.00 5.19
250 251 2.683362 GACCCAAATCTAAAAGAGGCCG 59.317 50.000 0.00 0.00 0.00 6.13
251 252 2.024414 CCCAAATCTAAAAGAGGCCGG 58.976 52.381 0.00 0.00 0.00 6.13
252 253 2.356741 CCCAAATCTAAAAGAGGCCGGA 60.357 50.000 5.05 0.00 0.00 5.14
253 254 2.683362 CCAAATCTAAAAGAGGCCGGAC 59.317 50.000 5.05 0.00 0.00 4.79
254 255 2.311124 AATCTAAAAGAGGCCGGACG 57.689 50.000 5.05 0.00 0.00 4.79
255 256 0.179081 ATCTAAAAGAGGCCGGACGC 60.179 55.000 5.05 3.00 0.00 5.19
287 288 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
288 289 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
289 290 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
290 291 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
291 292 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
292 293 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
293 294 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79
294 295 0.810823 AACGGACAAAAAGCGGACGA 60.811 50.000 0.00 0.00 0.00 4.20
295 296 0.810823 ACGGACAAAAAGCGGACGAA 60.811 50.000 0.00 0.00 0.00 3.85
296 297 0.305313 CGGACAAAAAGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46
297 298 1.069500 CGGACAAAAAGCGGACGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
298 299 2.581637 GGACAAAAAGCGGACGAAATC 58.418 47.619 0.00 0.00 0.00 2.17
299 300 2.230864 GACAAAAAGCGGACGAAATCG 58.769 47.619 0.48 0.48 46.33 3.34
308 309 4.667420 ACGAAATCGCCGTCTGTT 57.333 50.000 2.15 0.00 44.43 3.16
309 310 2.908817 ACGAAATCGCCGTCTGTTT 58.091 47.368 2.15 0.00 44.43 2.83
310 311 0.511221 ACGAAATCGCCGTCTGTTTG 59.489 50.000 2.15 0.00 44.43 2.93
311 312 0.179225 CGAAATCGCCGTCTGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
312 313 0.168128 GAAATCGCCGTCTGTTTGGG 59.832 55.000 0.00 0.00 0.00 4.12
313 314 0.536460 AAATCGCCGTCTGTTTGGGT 60.536 50.000 0.00 0.00 0.00 4.51
314 315 0.536460 AATCGCCGTCTGTTTGGGTT 60.536 50.000 0.00 0.00 0.00 4.11
315 316 1.234615 ATCGCCGTCTGTTTGGGTTG 61.235 55.000 0.00 0.00 0.00 3.77
316 317 2.335011 GCCGTCTGTTTGGGTTGC 59.665 61.111 0.00 0.00 0.00 4.17
317 318 3.039134 CCGTCTGTTTGGGTTGCC 58.961 61.111 0.00 0.00 0.00 4.52
318 319 2.561037 CCGTCTGTTTGGGTTGCCC 61.561 63.158 0.00 0.00 45.71 5.36
328 329 4.539235 GGTTGCCCCATTGGAGTT 57.461 55.556 3.62 0.00 35.39 3.01
329 330 1.974543 GGTTGCCCCATTGGAGTTG 59.025 57.895 3.62 0.00 35.39 3.16
330 331 1.293179 GTTGCCCCATTGGAGTTGC 59.707 57.895 3.62 2.08 35.39 4.17
331 332 1.155859 TTGCCCCATTGGAGTTGCT 59.844 52.632 3.62 0.00 35.39 3.91
335 336 1.340991 GCCCCATTGGAGTTGCTCTAA 60.341 52.381 3.62 0.00 35.57 2.10
390 396 4.020662 TCACAATTTTCTTAATGCACCCCC 60.021 41.667 0.00 0.00 0.00 5.40
393 399 3.534357 TTTTCTTAATGCACCCCCAGA 57.466 42.857 0.00 0.00 0.00 3.86
404 410 1.133976 CACCCCCAGATTCTCCATCAC 60.134 57.143 0.00 0.00 33.75 3.06
412 418 4.520179 CAGATTCTCCATCACCAACATCA 58.480 43.478 0.00 0.00 33.75 3.07
416 422 3.889815 TCTCCATCACCAACATCAATCC 58.110 45.455 0.00 0.00 0.00 3.01
423 429 3.098377 CACCAACATCAATCCATTCCCA 58.902 45.455 0.00 0.00 0.00 4.37
426 432 3.016031 CAACATCAATCCATTCCCACGA 58.984 45.455 0.00 0.00 0.00 4.35
427 433 3.364460 ACATCAATCCATTCCCACGAA 57.636 42.857 0.00 0.00 0.00 3.85
430 436 1.281867 TCAATCCATTCCCACGAAGCT 59.718 47.619 0.00 0.00 0.00 3.74
431 437 1.402968 CAATCCATTCCCACGAAGCTG 59.597 52.381 0.00 0.00 0.00 4.24
432 438 0.749454 ATCCATTCCCACGAAGCTGC 60.749 55.000 0.00 0.00 0.00 5.25
445 461 0.825010 AAGCTGCAAACCCCACAGAG 60.825 55.000 1.02 0.00 33.10 3.35
540 556 2.353573 CACCTAAACCCCCACCCG 59.646 66.667 0.00 0.00 0.00 5.28
641 658 4.310672 GCGCATACGTGAGGAGAG 57.689 61.111 0.30 0.00 42.83 3.20
642 659 1.946650 GCGCATACGTGAGGAGAGC 60.947 63.158 0.30 0.00 42.83 4.09
643 660 1.433471 CGCATACGTGAGGAGAGCA 59.567 57.895 0.00 0.00 33.53 4.26
645 662 0.873743 GCATACGTGAGGAGAGCAGC 60.874 60.000 0.00 0.00 0.00 5.25
646 663 0.593518 CATACGTGAGGAGAGCAGCG 60.594 60.000 0.00 0.00 0.00 5.18
647 664 0.748367 ATACGTGAGGAGAGCAGCGA 60.748 55.000 0.00 0.00 0.00 4.93
725 783 0.179161 TGCGTCAAACCAACAAACCG 60.179 50.000 0.00 0.00 0.00 4.44
732 792 0.032912 AACCAACAAACCGAACCCCT 60.033 50.000 0.00 0.00 0.00 4.79
807 868 2.026157 TCGATCATCGAGCCGTGC 59.974 61.111 5.39 0.00 44.82 5.34
818 879 2.048127 GCCGTGCGTTCTTCTCCT 60.048 61.111 0.00 0.00 0.00 3.69
872 933 0.824759 AGGAGAAGGTGACATACGGC 59.175 55.000 0.00 0.00 0.00 5.68
873 934 0.824759 GGAGAAGGTGACATACGGCT 59.175 55.000 0.00 0.00 0.00 5.52
923 984 1.738099 CGCCTCGCTGCCCATATAC 60.738 63.158 0.00 0.00 0.00 1.47
924 985 1.376037 GCCTCGCTGCCCATATACC 60.376 63.158 0.00 0.00 0.00 2.73
925 986 1.296715 CCTCGCTGCCCATATACCC 59.703 63.158 0.00 0.00 0.00 3.69
926 987 1.194781 CCTCGCTGCCCATATACCCT 61.195 60.000 0.00 0.00 0.00 4.34
938 999 1.424638 TATACCCTCCCTGCTCTTGC 58.575 55.000 0.00 0.00 40.20 4.01
947 1008 1.301244 CTGCTCTTGCGGTGTCAGT 60.301 57.895 0.00 0.00 43.34 3.41
981 1042 4.927782 TGCTGTCGTTGCGGCCTT 62.928 61.111 0.00 0.00 39.88 4.35
982 1043 4.389576 GCTGTCGTTGCGGCCTTG 62.390 66.667 0.00 0.00 34.84 3.61
983 1044 4.389576 CTGTCGTTGCGGCCTTGC 62.390 66.667 0.00 0.00 0.00 4.01
1013 1081 0.481567 ATCTGCATGGGGAGAATGGG 59.518 55.000 0.00 0.00 45.12 4.00
1323 1415 6.448006 ACTGTATTATCCTTGTACGATGAGC 58.552 40.000 0.00 0.00 0.00 4.26
1324 1416 5.779922 TGTATTATCCTTGTACGATGAGCC 58.220 41.667 0.00 0.00 0.00 4.70
1325 1417 5.538813 TGTATTATCCTTGTACGATGAGCCT 59.461 40.000 0.00 0.00 0.00 4.58
1326 1418 6.717997 TGTATTATCCTTGTACGATGAGCCTA 59.282 38.462 0.00 0.00 0.00 3.93
1353 1492 4.910195 TGCCATCACTCTGTCACTTAAAT 58.090 39.130 0.00 0.00 0.00 1.40
1354 1493 6.048732 TGCCATCACTCTGTCACTTAAATA 57.951 37.500 0.00 0.00 0.00 1.40
1355 1494 6.653020 TGCCATCACTCTGTCACTTAAATAT 58.347 36.000 0.00 0.00 0.00 1.28
1357 1496 6.540189 GCCATCACTCTGTCACTTAAATATGT 59.460 38.462 0.00 0.00 0.00 2.29
1358 1497 7.710907 GCCATCACTCTGTCACTTAAATATGTA 59.289 37.037 0.00 0.00 0.00 2.29
1359 1498 9.770097 CCATCACTCTGTCACTTAAATATGTAT 57.230 33.333 0.00 0.00 0.00 2.29
1361 1500 8.648557 TCACTCTGTCACTTAAATATGTATGC 57.351 34.615 0.00 0.00 0.00 3.14
1364 1503 9.448438 ACTCTGTCACTTAAATATGTATGCAAA 57.552 29.630 0.00 0.00 0.00 3.68
1596 1735 2.927856 TGGGCAAGGAGAAGGCGA 60.928 61.111 0.00 0.00 0.00 5.54
1901 2040 4.445545 GCTGCGCAGTACAACGGC 62.446 66.667 35.80 18.23 35.94 5.68
1907 2046 3.118454 CAGTACAACGGCCGGCTG 61.118 66.667 33.73 33.73 0.00 4.85
2304 2461 2.855370 GACATTTTGCGTTTTGGTTCGT 59.145 40.909 0.00 0.00 0.00 3.85
2315 2472 1.464734 TTGGTTCGTGAAGTTTGGCA 58.535 45.000 0.00 0.00 0.00 4.92
2434 2593 2.522185 ACAAATGCAGAGGCTCACATT 58.478 42.857 22.65 22.65 41.91 2.71
2496 2655 2.991190 GCGTTCCTGTCTTCGTCAATTA 59.009 45.455 0.00 0.00 0.00 1.40
2497 2656 3.181533 GCGTTCCTGTCTTCGTCAATTAC 60.182 47.826 0.00 0.00 0.00 1.89
2501 2660 5.147330 TCCTGTCTTCGTCAATTACACAT 57.853 39.130 0.00 0.00 0.00 3.21
2502 2661 5.168569 TCCTGTCTTCGTCAATTACACATC 58.831 41.667 0.00 0.00 0.00 3.06
2506 2665 4.388773 GTCTTCGTCAATTACACATCTGCA 59.611 41.667 0.00 0.00 0.00 4.41
2510 2669 4.152223 TCGTCAATTACACATCTGCACTTG 59.848 41.667 0.00 0.00 0.00 3.16
2511 2670 4.669965 CGTCAATTACACATCTGCACTTGG 60.670 45.833 0.00 0.00 0.00 3.61
2513 2672 2.949177 TTACACATCTGCACTTGGGT 57.051 45.000 4.56 4.56 33.21 4.51
2514 2673 2.472695 TACACATCTGCACTTGGGTC 57.527 50.000 2.39 0.00 30.65 4.46
2516 2675 1.672356 ACATCTGCACTTGGGTCGC 60.672 57.895 0.00 0.00 0.00 5.19
2517 2676 1.672030 CATCTGCACTTGGGTCGCA 60.672 57.895 0.00 0.00 0.00 5.10
2518 2677 1.672356 ATCTGCACTTGGGTCGCAC 60.672 57.895 0.00 0.00 0.00 5.34
2519 2678 3.716006 CTGCACTTGGGTCGCACG 61.716 66.667 0.00 0.00 0.00 5.34
2523 2682 3.980989 ACTTGGGTCGCACGCGTA 61.981 61.111 13.44 0.00 40.74 4.42
2524 2683 3.475774 CTTGGGTCGCACGCGTAC 61.476 66.667 13.44 5.01 40.74 3.67
2533 2702 1.694962 GCACGCGTACGAGAGTTTC 59.305 57.895 25.90 8.64 46.40 2.78
2535 2704 1.248721 CACGCGTACGAGAGTTTCTC 58.751 55.000 25.90 0.00 46.40 2.87
2572 2741 1.745489 GAACCGCTGACATCCACCC 60.745 63.158 0.00 0.00 0.00 4.61
2573 2742 2.185310 GAACCGCTGACATCCACCCT 62.185 60.000 0.00 0.00 0.00 4.34
2600 2770 1.765230 ACCACCGTATCTCAGACCTC 58.235 55.000 0.00 0.00 0.00 3.85
2603 2773 0.927767 ACCGTATCTCAGACCTCCCT 59.072 55.000 0.00 0.00 0.00 4.20
2604 2774 1.323412 CCGTATCTCAGACCTCCCTG 58.677 60.000 0.00 0.00 35.55 4.45
2713 2883 9.838339 AAGAGTAACTCTTCTCAAAATCTCAAA 57.162 29.630 0.00 0.00 46.42 2.69
2748 2919 5.967088 CCCTTAAAATGAATTTACGTACCGC 59.033 40.000 0.00 0.00 33.26 5.68
2796 2968 5.422145 GCAAACCCGTATCTAGGAGTTTTA 58.578 41.667 0.00 0.00 33.22 1.52
2813 2985 5.209977 AGTTTTATTTTCTCCGCACGTTTC 58.790 37.500 0.00 0.00 0.00 2.78
2814 2986 3.443054 TTATTTTCTCCGCACGTTTCG 57.557 42.857 0.00 0.00 0.00 3.46
2815 2987 1.223187 ATTTTCTCCGCACGTTTCGT 58.777 45.000 6.28 0.00 42.36 3.85
2855 3027 0.173708 GATGAACTCGAACTCCGGCT 59.826 55.000 0.00 0.00 39.14 5.52
2865 3037 0.106419 AACTCCGGCTGACCCAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
2917 3099 1.769098 CGTGCTCCAATGATGCTCCG 61.769 60.000 0.00 0.00 0.00 4.63
2960 3142 4.731612 CTGCTCGCTGCTCACGGT 62.732 66.667 0.00 0.00 43.37 4.83
2985 3168 2.422519 CGTAGCCAAGTCCCCTACTCTA 60.423 54.545 0.00 0.00 37.50 2.43
2993 3176 2.091775 AGTCCCCTACTCTAGCGTTGAT 60.092 50.000 0.00 0.00 30.33 2.57
3062 3245 4.371855 TGCTCTAATGTACGAGAACCTG 57.628 45.455 0.00 0.00 0.00 4.00
3091 3277 4.307259 AGGGGGATCTGCTATTTTACAGA 58.693 43.478 0.00 0.00 46.34 3.41
3172 3359 2.246469 GGATCTGCTAGAGATGCTCCA 58.754 52.381 12.96 0.00 44.26 3.86
3222 3409 6.561454 AGAGGGTAGGAGAAAAGGTTTTTAGA 59.439 38.462 0.00 0.00 0.00 2.10
3228 3415 9.205719 GTAGGAGAAAAGGTTTTTAGACACTAG 57.794 37.037 0.00 0.00 0.00 2.57
3236 3423 8.890124 AAGGTTTTTAGACACTAGAAGAGTTC 57.110 34.615 0.00 0.00 35.64 3.01
3237 3424 7.443477 AGGTTTTTAGACACTAGAAGAGTTCC 58.557 38.462 0.00 0.00 35.64 3.62
3238 3425 7.290481 AGGTTTTTAGACACTAGAAGAGTTCCT 59.710 37.037 0.00 0.00 35.64 3.36
3239 3426 7.932491 GGTTTTTAGACACTAGAAGAGTTCCTT 59.068 37.037 0.00 0.00 35.64 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.415697 ATCTGGTTTGGCGAAAAACG 57.584 45.000 0.00 0.00 38.39 3.60
4 5 3.181575 CGAAATCTGGTTTGGCGAAAAAC 59.818 43.478 0.00 5.16 38.96 2.43
5 6 3.376540 CGAAATCTGGTTTGGCGAAAAA 58.623 40.909 0.00 0.00 0.00 1.94
6 7 2.287909 CCGAAATCTGGTTTGGCGAAAA 60.288 45.455 0.00 0.00 0.00 2.29
7 8 1.268352 CCGAAATCTGGTTTGGCGAAA 59.732 47.619 0.00 0.00 0.00 3.46
8 9 0.878416 CCGAAATCTGGTTTGGCGAA 59.122 50.000 0.00 0.00 0.00 4.70
9 10 0.035598 TCCGAAATCTGGTTTGGCGA 59.964 50.000 0.00 0.00 0.00 5.54
10 11 0.447801 CTCCGAAATCTGGTTTGGCG 59.552 55.000 0.00 0.00 0.00 5.69
11 12 0.811281 CCTCCGAAATCTGGTTTGGC 59.189 55.000 0.00 0.00 0.00 4.52
12 13 2.027192 TCTCCTCCGAAATCTGGTTTGG 60.027 50.000 0.00 0.00 0.00 3.28
13 14 3.334583 TCTCCTCCGAAATCTGGTTTG 57.665 47.619 0.00 0.00 0.00 2.93
14 15 3.307762 CCTTCTCCTCCGAAATCTGGTTT 60.308 47.826 0.00 0.00 0.00 3.27
15 16 2.237392 CCTTCTCCTCCGAAATCTGGTT 59.763 50.000 0.00 0.00 0.00 3.67
16 17 1.834263 CCTTCTCCTCCGAAATCTGGT 59.166 52.381 0.00 0.00 0.00 4.00
17 18 1.474143 GCCTTCTCCTCCGAAATCTGG 60.474 57.143 0.00 0.00 0.00 3.86
18 19 1.804372 CGCCTTCTCCTCCGAAATCTG 60.804 57.143 0.00 0.00 0.00 2.90
19 20 0.461961 CGCCTTCTCCTCCGAAATCT 59.538 55.000 0.00 0.00 0.00 2.40
20 21 1.154814 GCGCCTTCTCCTCCGAAATC 61.155 60.000 0.00 0.00 0.00 2.17
21 22 1.153349 GCGCCTTCTCCTCCGAAAT 60.153 57.895 0.00 0.00 0.00 2.17
22 23 2.264794 GCGCCTTCTCCTCCGAAA 59.735 61.111 0.00 0.00 0.00 3.46
23 24 3.771160 GGCGCCTTCTCCTCCGAA 61.771 66.667 22.15 0.00 0.00 4.30
27 28 4.214327 CTCCGGCGCCTTCTCCTC 62.214 72.222 26.68 0.00 0.00 3.71
55 56 0.738412 TTCGGATTTTCGCGGAGTCC 60.738 55.000 6.13 8.64 0.00 3.85
56 57 0.645868 CTTCGGATTTTCGCGGAGTC 59.354 55.000 6.13 0.00 0.00 3.36
57 58 1.359459 GCTTCGGATTTTCGCGGAGT 61.359 55.000 6.13 0.00 0.00 3.85
58 59 1.348594 GCTTCGGATTTTCGCGGAG 59.651 57.895 6.13 0.00 0.00 4.63
59 60 2.449525 CGCTTCGGATTTTCGCGGA 61.450 57.895 6.13 0.00 40.11 5.54
60 61 2.021380 CGCTTCGGATTTTCGCGG 59.979 61.111 6.13 0.00 40.11 6.46
61 62 2.644707 GCGCTTCGGATTTTCGCG 60.645 61.111 0.00 0.00 45.88 5.87
62 63 2.277310 GGCGCTTCGGATTTTCGC 60.277 61.111 7.64 0.00 44.39 4.70
63 64 2.309764 CTGGGCGCTTCGGATTTTCG 62.310 60.000 7.64 0.00 0.00 3.46
64 65 1.429423 CTGGGCGCTTCGGATTTTC 59.571 57.895 7.64 0.00 0.00 2.29
65 66 2.046285 CCTGGGCGCTTCGGATTTT 61.046 57.895 7.64 0.00 0.00 1.82
66 67 2.438434 CCTGGGCGCTTCGGATTT 60.438 61.111 7.64 0.00 0.00 2.17
84 85 3.928769 CACCATGTCGATGCGCCG 61.929 66.667 4.18 1.29 0.00 6.46
85 86 3.576356 CCACCATGTCGATGCGCC 61.576 66.667 4.18 0.00 0.00 6.53
86 87 4.241999 GCCACCATGTCGATGCGC 62.242 66.667 0.00 0.00 0.00 6.09
87 88 3.928769 CGCCACCATGTCGATGCG 61.929 66.667 0.00 0.00 35.81 4.73
88 89 4.241999 GCGCCACCATGTCGATGC 62.242 66.667 0.00 0.00 0.00 3.91
89 90 2.816360 CTGCGCCACCATGTCGATG 61.816 63.158 4.18 0.00 0.00 3.84
90 91 2.512286 CTGCGCCACCATGTCGAT 60.512 61.111 4.18 0.00 0.00 3.59
91 92 3.647649 CTCTGCGCCACCATGTCGA 62.648 63.158 4.18 0.00 0.00 4.20
92 93 3.190849 CTCTGCGCCACCATGTCG 61.191 66.667 4.18 0.00 0.00 4.35
93 94 2.821366 CCTCTGCGCCACCATGTC 60.821 66.667 4.18 0.00 0.00 3.06
120 121 4.329545 TCTGTTGGCCGCCCACTC 62.330 66.667 14.37 0.02 41.97 3.51
121 122 4.335647 CTCTGTTGGCCGCCCACT 62.336 66.667 14.37 0.00 41.97 4.00
122 123 4.643387 ACTCTGTTGGCCGCCCAC 62.643 66.667 7.03 6.84 41.97 4.61
123 124 4.641645 CACTCTGTTGGCCGCCCA 62.642 66.667 7.03 0.00 40.06 5.36
124 125 4.643387 ACACTCTGTTGGCCGCCC 62.643 66.667 7.03 0.00 0.00 6.13
125 126 3.050275 GACACTCTGTTGGCCGCC 61.050 66.667 1.04 1.04 0.00 6.13
126 127 3.414700 CGACACTCTGTTGGCCGC 61.415 66.667 0.00 0.00 0.00 6.53
127 128 1.734477 CTCGACACTCTGTTGGCCG 60.734 63.158 0.00 0.00 32.62 6.13
128 129 1.374758 CCTCGACACTCTGTTGGCC 60.375 63.158 0.00 0.00 32.62 5.36
129 130 1.374758 CCCTCGACACTCTGTTGGC 60.375 63.158 0.00 0.00 32.62 4.52
130 131 0.679505 TTCCCTCGACACTCTGTTGG 59.320 55.000 0.00 0.00 32.62 3.77
131 132 1.784525 GTTCCCTCGACACTCTGTTG 58.215 55.000 0.00 0.00 33.03 3.33
132 133 0.314302 CGTTCCCTCGACACTCTGTT 59.686 55.000 0.00 0.00 0.00 3.16
133 134 1.957562 CGTTCCCTCGACACTCTGT 59.042 57.895 0.00 0.00 0.00 3.41
134 135 1.444553 GCGTTCCCTCGACACTCTG 60.445 63.158 0.00 0.00 0.00 3.35
135 136 1.251527 ATGCGTTCCCTCGACACTCT 61.252 55.000 0.00 0.00 0.00 3.24
136 137 0.389948 AATGCGTTCCCTCGACACTC 60.390 55.000 0.00 0.00 0.00 3.51
137 138 0.034896 AAATGCGTTCCCTCGACACT 59.965 50.000 0.00 0.00 0.00 3.55
138 139 0.872388 AAAATGCGTTCCCTCGACAC 59.128 50.000 0.00 0.00 0.00 3.67
139 140 1.600023 AAAAATGCGTTCCCTCGACA 58.400 45.000 0.00 0.00 0.00 4.35
140 141 3.817148 TTAAAAATGCGTTCCCTCGAC 57.183 42.857 0.00 0.00 0.00 4.20
141 142 5.446206 CGTTATTAAAAATGCGTTCCCTCGA 60.446 40.000 0.00 0.00 0.00 4.04
142 143 4.726704 CGTTATTAAAAATGCGTTCCCTCG 59.273 41.667 0.00 0.00 0.00 4.63
143 144 4.497966 GCGTTATTAAAAATGCGTTCCCTC 59.502 41.667 0.00 0.00 32.13 4.30
144 145 4.417506 GCGTTATTAAAAATGCGTTCCCT 58.582 39.130 0.00 0.00 32.13 4.20
145 146 4.748503 GCGTTATTAAAAATGCGTTCCC 57.251 40.909 0.00 0.00 32.13 3.97
151 152 1.072413 GGCGCGCGTTATTAAAAATGC 60.072 47.619 32.35 9.21 37.89 3.56
152 153 2.177977 TGGCGCGCGTTATTAAAAATG 58.822 42.857 32.35 0.00 0.00 2.32
153 154 2.546195 TGGCGCGCGTTATTAAAAAT 57.454 40.000 32.35 0.00 0.00 1.82
154 155 1.977412 GTTGGCGCGCGTTATTAAAAA 59.023 42.857 32.35 11.08 0.00 1.94
155 156 1.069432 TGTTGGCGCGCGTTATTAAAA 60.069 42.857 32.35 11.55 0.00 1.52
156 157 0.516001 TGTTGGCGCGCGTTATTAAA 59.484 45.000 32.35 13.54 0.00 1.52
157 158 0.727970 ATGTTGGCGCGCGTTATTAA 59.272 45.000 32.35 15.87 0.00 1.40
158 159 0.727970 AATGTTGGCGCGCGTTATTA 59.272 45.000 32.35 15.76 0.00 0.98
159 160 0.522495 GAATGTTGGCGCGCGTTATT 60.522 50.000 32.35 21.07 0.00 1.40
160 161 1.061887 GAATGTTGGCGCGCGTTAT 59.938 52.632 32.35 13.71 0.00 1.89
161 162 0.736672 TAGAATGTTGGCGCGCGTTA 60.737 50.000 32.35 17.91 0.00 3.18
162 163 1.570347 TTAGAATGTTGGCGCGCGTT 61.570 50.000 32.35 16.68 0.00 4.84
163 164 1.570347 TTTAGAATGTTGGCGCGCGT 61.570 50.000 32.35 9.50 0.00 6.01
164 165 0.453615 TTTTAGAATGTTGGCGCGCG 60.454 50.000 28.44 28.44 0.00 6.86
165 166 1.692296 TTTTTAGAATGTTGGCGCGC 58.308 45.000 25.94 25.94 0.00 6.86
166 167 3.481789 GCAATTTTTAGAATGTTGGCGCG 60.482 43.478 0.00 0.00 0.00 6.86
167 168 3.481789 CGCAATTTTTAGAATGTTGGCGC 60.482 43.478 0.00 0.00 0.00 6.53
168 169 3.481789 GCGCAATTTTTAGAATGTTGGCG 60.482 43.478 0.30 0.00 0.00 5.69
169 170 3.481789 CGCGCAATTTTTAGAATGTTGGC 60.482 43.478 8.75 0.00 0.00 4.52
170 171 3.481789 GCGCGCAATTTTTAGAATGTTGG 60.482 43.478 29.10 0.00 0.00 3.77
171 172 3.648357 GCGCGCAATTTTTAGAATGTTG 58.352 40.909 29.10 0.00 0.00 3.33
172 173 2.341168 CGCGCGCAATTTTTAGAATGTT 59.659 40.909 32.61 0.00 0.00 2.71
173 174 1.910819 CGCGCGCAATTTTTAGAATGT 59.089 42.857 32.61 0.00 0.00 2.71
174 175 1.252524 CCGCGCGCAATTTTTAGAATG 59.747 47.619 32.61 9.44 0.00 2.67
175 176 1.131504 TCCGCGCGCAATTTTTAGAAT 59.868 42.857 32.61 0.00 0.00 2.40
176 177 0.517755 TCCGCGCGCAATTTTTAGAA 59.482 45.000 32.61 0.00 0.00 2.10
177 178 0.179210 GTCCGCGCGCAATTTTTAGA 60.179 50.000 32.61 10.17 0.00 2.10
178 179 0.453615 TGTCCGCGCGCAATTTTTAG 60.454 50.000 32.61 11.84 0.00 1.85
179 180 0.169230 ATGTCCGCGCGCAATTTTTA 59.831 45.000 32.61 10.32 0.00 1.52
180 181 1.080839 ATGTCCGCGCGCAATTTTT 60.081 47.368 32.61 7.81 0.00 1.94
181 182 1.801113 CATGTCCGCGCGCAATTTT 60.801 52.632 32.61 9.62 0.00 1.82
182 183 2.193865 TTCATGTCCGCGCGCAATTT 62.194 50.000 32.61 8.40 0.00 1.82
183 184 2.193865 TTTCATGTCCGCGCGCAATT 62.194 50.000 32.61 7.59 0.00 2.32
184 185 1.992233 ATTTCATGTCCGCGCGCAAT 61.992 50.000 32.61 17.17 0.00 3.56
185 186 2.685829 ATTTCATGTCCGCGCGCAA 61.686 52.632 32.61 16.17 0.00 4.85
186 187 3.124270 ATTTCATGTCCGCGCGCA 61.124 55.556 32.61 19.15 0.00 6.09
187 188 2.648724 CATTTCATGTCCGCGCGC 60.649 61.111 27.36 23.91 0.00 6.86
188 189 2.023181 CCATTTCATGTCCGCGCG 59.977 61.111 25.67 25.67 0.00 6.86
189 190 2.322999 GACCCATTTCATGTCCGCGC 62.323 60.000 0.00 0.00 0.00 6.86
190 191 0.744414 AGACCCATTTCATGTCCGCG 60.744 55.000 0.00 0.00 0.00 6.46
191 192 0.734889 CAGACCCATTTCATGTCCGC 59.265 55.000 0.00 0.00 0.00 5.54
192 193 0.734889 GCAGACCCATTTCATGTCCG 59.265 55.000 0.00 0.00 0.00 4.79
193 194 0.734889 CGCAGACCCATTTCATGTCC 59.265 55.000 0.00 0.00 0.00 4.02
194 195 0.099436 GCGCAGACCCATTTCATGTC 59.901 55.000 0.30 0.00 0.00 3.06
195 196 1.647545 CGCGCAGACCCATTTCATGT 61.648 55.000 8.75 0.00 0.00 3.21
196 197 1.063006 CGCGCAGACCCATTTCATG 59.937 57.895 8.75 0.00 0.00 3.07
197 198 0.960364 AACGCGCAGACCCATTTCAT 60.960 50.000 5.73 0.00 0.00 2.57
198 199 1.599518 AACGCGCAGACCCATTTCA 60.600 52.632 5.73 0.00 0.00 2.69
199 200 1.154225 CAACGCGCAGACCCATTTC 60.154 57.895 5.73 0.00 0.00 2.17
200 201 2.625823 CCAACGCGCAGACCCATTT 61.626 57.895 5.73 0.00 0.00 2.32
201 202 3.055719 CCAACGCGCAGACCCATT 61.056 61.111 5.73 0.00 0.00 3.16
202 203 4.015406 TCCAACGCGCAGACCCAT 62.015 61.111 5.73 0.00 0.00 4.00
203 204 4.980805 GTCCAACGCGCAGACCCA 62.981 66.667 5.73 0.00 0.00 4.51
221 222 2.265467 TAGATTTGGGTCGGCAGGGC 62.265 60.000 0.00 0.00 0.00 5.19
222 223 0.254747 TTAGATTTGGGTCGGCAGGG 59.745 55.000 0.00 0.00 0.00 4.45
223 224 2.122783 TTTAGATTTGGGTCGGCAGG 57.877 50.000 0.00 0.00 0.00 4.85
224 225 3.343617 TCTTTTAGATTTGGGTCGGCAG 58.656 45.455 0.00 0.00 0.00 4.85
225 226 3.343617 CTCTTTTAGATTTGGGTCGGCA 58.656 45.455 0.00 0.00 0.00 5.69
226 227 2.683362 CCTCTTTTAGATTTGGGTCGGC 59.317 50.000 0.00 0.00 0.00 5.54
227 228 2.683362 GCCTCTTTTAGATTTGGGTCGG 59.317 50.000 0.00 0.00 0.00 4.79
228 229 2.683362 GGCCTCTTTTAGATTTGGGTCG 59.317 50.000 0.00 0.00 0.00 4.79
229 230 2.683362 CGGCCTCTTTTAGATTTGGGTC 59.317 50.000 0.00 0.00 0.00 4.46
230 231 2.620627 CCGGCCTCTTTTAGATTTGGGT 60.621 50.000 0.00 0.00 0.00 4.51
231 232 2.024414 CCGGCCTCTTTTAGATTTGGG 58.976 52.381 0.00 0.00 0.00 4.12
232 233 2.683362 GTCCGGCCTCTTTTAGATTTGG 59.317 50.000 0.00 0.00 0.00 3.28
233 234 2.351726 CGTCCGGCCTCTTTTAGATTTG 59.648 50.000 0.00 0.00 0.00 2.32
234 235 2.629051 CGTCCGGCCTCTTTTAGATTT 58.371 47.619 0.00 0.00 0.00 2.17
235 236 1.742750 GCGTCCGGCCTCTTTTAGATT 60.743 52.381 0.00 0.00 34.80 2.40
236 237 0.179081 GCGTCCGGCCTCTTTTAGAT 60.179 55.000 0.00 0.00 34.80 1.98
237 238 1.217244 GCGTCCGGCCTCTTTTAGA 59.783 57.895 0.00 0.00 34.80 2.10
238 239 3.795638 GCGTCCGGCCTCTTTTAG 58.204 61.111 0.00 0.00 34.80 1.85
263 264 4.629523 TCCGTTTGGGTCGGCCAC 62.630 66.667 9.07 0.00 46.49 5.01
264 265 4.629523 GTCCGTTTGGGTCGGCCA 62.630 66.667 9.07 0.00 46.49 5.36
265 266 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
266 267 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
268 269 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
269 270 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
270 271 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
271 272 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
272 273 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
273 274 1.472990 GTCCGCTTTTTGTCCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
274 275 0.028374 CGTCCGCTTTTTGTCCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
275 276 0.810823 TCGTCCGCTTTTTGTCCGTT 60.811 50.000 0.00 0.00 0.00 4.44
276 277 0.810823 TTCGTCCGCTTTTTGTCCGT 60.811 50.000 0.00 0.00 0.00 4.69
277 278 0.305313 TTTCGTCCGCTTTTTGTCCG 59.695 50.000 0.00 0.00 0.00 4.79
278 279 2.581637 GATTTCGTCCGCTTTTTGTCC 58.418 47.619 0.00 0.00 0.00 4.02
279 280 2.230864 CGATTTCGTCCGCTTTTTGTC 58.769 47.619 0.00 0.00 34.11 3.18
280 281 1.662026 GCGATTTCGTCCGCTTTTTGT 60.662 47.619 0.00 0.00 46.96 2.83
281 282 0.974836 GCGATTTCGTCCGCTTTTTG 59.025 50.000 0.00 0.00 46.96 2.44
282 283 3.378013 GCGATTTCGTCCGCTTTTT 57.622 47.368 0.00 0.00 46.96 1.94
291 292 0.511221 CAAACAGACGGCGATTTCGT 59.489 50.000 16.62 0.00 44.03 3.85
292 293 0.179225 CCAAACAGACGGCGATTTCG 60.179 55.000 16.62 0.00 43.27 3.46
293 294 0.168128 CCCAAACAGACGGCGATTTC 59.832 55.000 16.62 0.00 0.00 2.17
294 295 0.536460 ACCCAAACAGACGGCGATTT 60.536 50.000 16.62 5.62 0.00 2.17
295 296 0.536460 AACCCAAACAGACGGCGATT 60.536 50.000 16.62 0.00 0.00 3.34
296 297 1.072505 AACCCAAACAGACGGCGAT 59.927 52.632 16.62 0.00 0.00 4.58
297 298 1.890041 CAACCCAAACAGACGGCGA 60.890 57.895 16.62 0.00 0.00 5.54
298 299 2.637025 CAACCCAAACAGACGGCG 59.363 61.111 4.80 4.80 0.00 6.46
299 300 2.335011 GCAACCCAAACAGACGGC 59.665 61.111 0.00 0.00 0.00 5.68
300 301 3.039134 GGCAACCCAAACAGACGG 58.961 61.111 0.00 0.00 0.00 4.79
312 313 1.187567 AGCAACTCCAATGGGGCAAC 61.188 55.000 0.00 0.00 36.21 4.17
313 314 0.899717 GAGCAACTCCAATGGGGCAA 60.900 55.000 0.00 0.00 36.21 4.52
314 315 1.304381 GAGCAACTCCAATGGGGCA 60.304 57.895 0.00 0.00 36.21 5.36
315 316 0.255890 TAGAGCAACTCCAATGGGGC 59.744 55.000 0.00 0.00 36.21 5.80
316 317 2.025887 AGTTAGAGCAACTCCAATGGGG 60.026 50.000 0.00 0.00 44.48 4.96
317 318 3.356529 AGTTAGAGCAACTCCAATGGG 57.643 47.619 0.00 0.00 44.48 4.00
363 369 6.980397 GGGTGCATTAAGAAAATTGTGATAGG 59.020 38.462 0.00 0.00 0.00 2.57
365 371 6.127196 GGGGGTGCATTAAGAAAATTGTGATA 60.127 38.462 0.00 0.00 0.00 2.15
390 396 4.520179 TGATGTTGGTGATGGAGAATCTG 58.480 43.478 0.00 0.00 36.15 2.90
393 399 4.891756 GGATTGATGTTGGTGATGGAGAAT 59.108 41.667 0.00 0.00 0.00 2.40
404 410 2.099592 CGTGGGAATGGATTGATGTTGG 59.900 50.000 0.00 0.00 0.00 3.77
412 418 1.755179 CAGCTTCGTGGGAATGGATT 58.245 50.000 0.00 0.00 0.00 3.01
416 422 0.597568 TTTGCAGCTTCGTGGGAATG 59.402 50.000 0.00 0.00 0.00 2.67
423 429 2.193536 GTGGGGTTTGCAGCTTCGT 61.194 57.895 0.00 0.00 0.00 3.85
426 432 0.825010 CTCTGTGGGGTTTGCAGCTT 60.825 55.000 0.00 0.00 0.00 3.74
427 433 1.228367 CTCTGTGGGGTTTGCAGCT 60.228 57.895 0.00 0.00 0.00 4.24
430 436 1.150536 GGTCTCTGTGGGGTTTGCA 59.849 57.895 0.00 0.00 0.00 4.08
431 437 0.251341 ATGGTCTCTGTGGGGTTTGC 60.251 55.000 0.00 0.00 0.00 3.68
432 438 1.352352 AGATGGTCTCTGTGGGGTTTG 59.648 52.381 0.00 0.00 31.12 2.93
445 461 0.037326 TCGTTGTCTGGCAGATGGTC 60.037 55.000 21.84 8.23 0.00 4.02
634 651 2.047151 CTCTCGTCGCTGCTCTCCTC 62.047 65.000 0.00 0.00 0.00 3.71
635 652 2.045829 TCTCGTCGCTGCTCTCCT 60.046 61.111 0.00 0.00 0.00 3.69
636 653 2.403378 ACTCTCGTCGCTGCTCTCC 61.403 63.158 0.00 0.00 0.00 3.71
637 654 1.226267 CACTCTCGTCGCTGCTCTC 60.226 63.158 0.00 0.00 0.00 3.20
639 656 1.226267 CTCACTCTCGTCGCTGCTC 60.226 63.158 0.00 0.00 0.00 4.26
641 658 1.513160 GTCTCACTCTCGTCGCTGC 60.513 63.158 0.00 0.00 0.00 5.25
642 659 1.225881 CGTCTCACTCTCGTCGCTG 60.226 63.158 0.00 0.00 0.00 5.18
643 660 0.389556 TACGTCTCACTCTCGTCGCT 60.390 55.000 0.00 0.00 38.69 4.93
645 662 1.524589 CGTTACGTCTCACTCTCGTCG 60.525 57.143 0.00 0.00 38.69 5.12
646 663 1.786222 GCGTTACGTCTCACTCTCGTC 60.786 57.143 6.63 0.00 38.69 4.20
647 664 0.165511 GCGTTACGTCTCACTCTCGT 59.834 55.000 6.63 0.00 40.78 4.18
725 783 0.035915 GAAGCTCAGTGGAGGGGTTC 60.036 60.000 0.00 0.00 41.67 3.62
732 792 3.432749 GCTTGATATGGAAGCTCAGTGGA 60.433 47.826 8.29 0.00 42.21 4.02
807 868 3.639094 AGACCATGGATAGGAGAAGAACG 59.361 47.826 21.47 0.00 0.00 3.95
818 879 0.105709 TGGGAGCGAGACCATGGATA 60.106 55.000 21.47 0.00 0.00 2.59
872 933 1.399087 CGCGGTCGATGACTATCTGAG 60.399 57.143 0.00 0.00 38.10 3.35
873 934 0.586802 CGCGGTCGATGACTATCTGA 59.413 55.000 0.00 0.00 38.10 3.27
917 978 2.289945 GCAAGAGCAGGGAGGGTATATG 60.290 54.545 0.00 0.00 41.58 1.78
919 980 1.424638 GCAAGAGCAGGGAGGGTATA 58.575 55.000 0.00 0.00 41.58 1.47
920 981 1.690219 CGCAAGAGCAGGGAGGGTAT 61.690 60.000 0.00 0.00 42.27 2.73
923 984 4.479993 CCGCAAGAGCAGGGAGGG 62.480 72.222 0.00 0.00 42.27 4.30
924 985 3.710722 ACCGCAAGAGCAGGGAGG 61.711 66.667 0.00 0.00 42.27 4.30
925 986 2.435586 CACCGCAAGAGCAGGGAG 60.436 66.667 0.00 0.00 42.27 4.30
926 987 3.240134 GACACCGCAAGAGCAGGGA 62.240 63.158 0.00 0.00 42.27 4.20
938 999 2.049228 GTACGAACTGAACTGACACCG 58.951 52.381 0.00 0.00 0.00 4.94
947 1008 1.542272 GCACGCACGTACGAACTGAA 61.542 55.000 24.41 0.00 36.70 3.02
979 1040 0.531532 CAGATGGAGCTACCCGCAAG 60.532 60.000 0.00 0.00 42.61 4.01
980 1041 1.522092 CAGATGGAGCTACCCGCAA 59.478 57.895 0.00 0.00 42.61 4.85
981 1042 3.094062 GCAGATGGAGCTACCCGCA 62.094 63.158 0.00 0.00 42.61 5.69
982 1043 2.280457 GCAGATGGAGCTACCCGC 60.280 66.667 0.00 0.00 38.00 6.13
983 1044 0.602106 CATGCAGATGGAGCTACCCG 60.602 60.000 0.00 0.00 38.00 5.28
984 1045 3.319135 CATGCAGATGGAGCTACCC 57.681 57.895 0.00 0.00 38.00 3.69
993 1054 1.617322 CCATTCTCCCCATGCAGATG 58.383 55.000 0.00 0.00 0.00 2.90
1070 1138 2.443016 CCTCCCCTCTCACCCTCG 60.443 72.222 0.00 0.00 0.00 4.63
1255 1323 1.402896 ATGATGTCGGCGATGGTCCT 61.403 55.000 14.79 2.04 0.00 3.85
1299 1391 6.448006 GCTCATCGTACAAGGATAATACAGT 58.552 40.000 0.00 0.00 0.00 3.55
1300 1392 5.864474 GGCTCATCGTACAAGGATAATACAG 59.136 44.000 0.00 0.00 0.00 2.74
1301 1393 5.538813 AGGCTCATCGTACAAGGATAATACA 59.461 40.000 0.00 0.00 0.00 2.29
1302 1394 6.026947 AGGCTCATCGTACAAGGATAATAC 57.973 41.667 0.00 0.00 0.00 1.89
1303 1395 7.173032 TCTAGGCTCATCGTACAAGGATAATA 58.827 38.462 0.00 0.00 0.00 0.98
1318 1410 2.121948 TGATGGCAACTCTAGGCTCAT 58.878 47.619 0.00 0.00 37.61 2.90
1319 1411 1.208052 GTGATGGCAACTCTAGGCTCA 59.792 52.381 0.00 0.00 37.61 4.26
1320 1412 1.484240 AGTGATGGCAACTCTAGGCTC 59.516 52.381 0.00 0.00 37.61 4.70
1321 1413 1.484240 GAGTGATGGCAACTCTAGGCT 59.516 52.381 11.25 0.00 37.61 4.58
1322 1414 1.484240 AGAGTGATGGCAACTCTAGGC 59.516 52.381 17.96 0.00 38.88 3.93
1323 1415 2.499289 ACAGAGTGATGGCAACTCTAGG 59.501 50.000 18.76 11.71 38.64 3.02
1324 1416 3.194329 TGACAGAGTGATGGCAACTCTAG 59.806 47.826 18.76 15.37 38.64 2.43
1325 1417 3.056536 GTGACAGAGTGATGGCAACTCTA 60.057 47.826 18.76 4.30 40.74 2.43
1326 1418 1.973515 TGACAGAGTGATGGCAACTCT 59.026 47.619 14.60 14.60 41.05 3.24
1353 1492 7.986320 CCCTGAAAATTGGAATTTGCATACATA 59.014 33.333 6.06 0.00 41.74 2.29
1354 1493 6.824704 CCCTGAAAATTGGAATTTGCATACAT 59.175 34.615 6.06 0.00 41.74 2.29
1355 1494 6.171921 CCCTGAAAATTGGAATTTGCATACA 58.828 36.000 6.06 0.00 41.74 2.29
1357 1496 5.486775 TCCCCTGAAAATTGGAATTTGCATA 59.513 36.000 6.06 0.00 41.74 3.14
1358 1497 4.289148 TCCCCTGAAAATTGGAATTTGCAT 59.711 37.500 6.06 0.00 41.74 3.96
1359 1498 3.649981 TCCCCTGAAAATTGGAATTTGCA 59.350 39.130 5.56 5.56 40.69 4.08
1360 1499 4.020307 TCTCCCCTGAAAATTGGAATTTGC 60.020 41.667 0.00 0.00 38.53 3.68
1361 1500 5.743636 TCTCCCCTGAAAATTGGAATTTG 57.256 39.130 0.00 0.00 38.53 2.32
1364 1503 3.708121 GCATCTCCCCTGAAAATTGGAAT 59.292 43.478 0.00 0.00 0.00 3.01
1366 1505 2.312741 AGCATCTCCCCTGAAAATTGGA 59.687 45.455 0.00 0.00 0.00 3.53
1368 1507 2.429610 CCAGCATCTCCCCTGAAAATTG 59.570 50.000 0.00 0.00 0.00 2.32
1369 1508 2.625087 CCCAGCATCTCCCCTGAAAATT 60.625 50.000 0.00 0.00 0.00 1.82
1370 1509 1.063417 CCCAGCATCTCCCCTGAAAAT 60.063 52.381 0.00 0.00 0.00 1.82
1596 1735 2.307098 CCTTCTTGTGGATGAACTCCCT 59.693 50.000 0.00 0.00 44.23 4.20
1814 1953 1.139058 GTCTTCTGGTACGGGATGCAT 59.861 52.381 0.00 0.00 33.92 3.96
2304 2461 5.184864 CCCAAGTTATACATGCCAAACTTCA 59.815 40.000 13.86 0.00 39.50 3.02
2315 2472 9.017509 CATCAAATATGCTCCCAAGTTATACAT 57.982 33.333 0.00 0.00 0.00 2.29
2434 2593 2.223758 TGTGTTTCGTATGGTGACGTGA 60.224 45.455 0.00 0.00 43.39 4.35
2496 2655 0.603707 CGACCCAAGTGCAGATGTGT 60.604 55.000 0.00 0.00 0.00 3.72
2497 2656 1.915614 GCGACCCAAGTGCAGATGTG 61.916 60.000 0.00 0.00 0.00 3.21
2501 2660 2.280797 GTGCGACCCAAGTGCAGA 60.281 61.111 0.00 0.00 39.67 4.26
2502 2661 3.716006 CGTGCGACCCAAGTGCAG 61.716 66.667 0.00 0.00 39.67 4.41
2506 2665 3.980989 TACGCGTGCGACCCAAGT 61.981 61.111 24.59 0.00 42.83 3.16
2511 2670 4.450122 TCTCGTACGCGTGCGACC 62.450 66.667 41.07 15.04 42.42 4.79
2513 2672 2.448153 AAACTCTCGTACGCGTGCGA 62.448 55.000 41.17 41.17 44.88 5.10
2514 2673 1.984351 GAAACTCTCGTACGCGTGCG 61.984 60.000 38.11 38.11 46.03 5.34
2516 2675 1.248721 GAGAAACTCTCGTACGCGTG 58.751 55.000 24.59 6.04 39.49 5.34
2517 2676 0.167689 GGAGAAACTCTCGTACGCGT 59.832 55.000 19.17 19.17 44.28 6.01
2518 2677 0.856490 CGGAGAAACTCTCGTACGCG 60.856 60.000 11.24 3.53 44.28 6.01
2519 2678 0.445436 TCGGAGAAACTCTCGTACGC 59.555 55.000 11.24 0.00 44.28 4.42
2520 2679 1.462283 TGTCGGAGAAACTCTCGTACG 59.538 52.381 9.53 9.53 44.28 3.67
2521 2680 2.740981 TCTGTCGGAGAAACTCTCGTAC 59.259 50.000 0.00 0.18 44.28 3.67
2522 2681 3.049708 TCTGTCGGAGAAACTCTCGTA 57.950 47.619 0.00 0.00 44.28 3.43
2523 2682 1.893544 TCTGTCGGAGAAACTCTCGT 58.106 50.000 0.00 0.00 44.28 4.18
2524 2683 4.593157 CTTATCTGTCGGAGAAACTCTCG 58.407 47.826 0.00 0.00 44.28 4.04
2527 2696 3.109619 CGCTTATCTGTCGGAGAAACTC 58.890 50.000 0.00 0.00 39.69 3.01
2535 2704 2.821546 TCAAATCCGCTTATCTGTCGG 58.178 47.619 0.00 0.00 44.16 4.79
2552 2721 0.605319 GGTGGATGTCAGCGGTTCAA 60.605 55.000 0.00 0.00 33.95 2.69
2553 2722 1.003839 GGTGGATGTCAGCGGTTCA 60.004 57.895 0.00 0.00 33.95 3.18
2587 2756 1.950909 CGTCAGGGAGGTCTGAGATAC 59.049 57.143 0.00 0.00 43.54 2.24
2588 2757 1.133761 CCGTCAGGGAGGTCTGAGATA 60.134 57.143 0.00 0.00 43.54 1.98
2589 2758 0.396417 CCGTCAGGGAGGTCTGAGAT 60.396 60.000 0.00 0.00 43.54 2.75
2603 2773 2.891580 GCCTCTATGATAGAACCCGTCA 59.108 50.000 3.48 0.00 33.75 4.35
2604 2774 2.231721 GGCCTCTATGATAGAACCCGTC 59.768 54.545 3.48 0.00 33.75 4.79
2615 2785 3.562182 TGTCTATCGTTGGCCTCTATGA 58.438 45.455 3.32 0.49 0.00 2.15
2619 2789 4.406003 AGTTATTGTCTATCGTTGGCCTCT 59.594 41.667 3.32 0.00 0.00 3.69
2713 2883 7.806680 ATTCATTTTAAGGGGGTATGTTGTT 57.193 32.000 0.00 0.00 0.00 2.83
2721 2891 6.377996 GGTACGTAAATTCATTTTAAGGGGGT 59.622 38.462 0.00 0.00 34.67 4.95
2748 2919 2.679355 TTGTTCCGTTTGATGCTTCG 57.321 45.000 0.00 0.00 0.00 3.79
2758 2929 1.033574 TTTGCGGGATTTGTTCCGTT 58.966 45.000 0.00 0.00 46.52 4.44
2774 2945 8.502105 AAATAAAACTCCTAGATACGGGTTTG 57.498 34.615 0.00 0.00 30.57 2.93
2796 2968 1.223187 ACGAAACGTGCGGAGAAAAT 58.777 45.000 14.39 0.00 39.18 1.82
2821 2993 3.861797 ATCCATCCGTGCGTCCCC 61.862 66.667 0.00 0.00 0.00 4.81
2832 3004 2.464865 CGGAGTTCGAGTTCATCCATC 58.535 52.381 0.00 0.00 42.43 3.51
2855 3027 2.548295 GCGGCGTCTTTTTGGGTCA 61.548 57.895 9.37 0.00 0.00 4.02
2931 3113 4.219999 GAGCAGGCGGAGGAGCTC 62.220 72.222 4.71 4.71 45.50 4.09
2985 3168 2.858745 ACCTGTAAACCAATCAACGCT 58.141 42.857 0.00 0.00 0.00 5.07
3018 3201 6.460781 CAACCATCCGTTATATACCAAGCTA 58.539 40.000 0.00 0.00 31.77 3.32
3019 3202 5.305585 CAACCATCCGTTATATACCAAGCT 58.694 41.667 0.00 0.00 31.77 3.74
3023 3206 4.591498 AGAGCAACCATCCGTTATATACCA 59.409 41.667 0.00 0.00 31.77 3.25
3070 3253 4.706842 TCTGTAAAATAGCAGATCCCCC 57.293 45.455 0.00 0.00 36.89 5.40
3071 3254 6.538263 AGATTCTGTAAAATAGCAGATCCCC 58.462 40.000 0.00 0.00 40.83 4.81
3197 3384 5.664815 AAAAACCTTTTCTCCTACCCTCT 57.335 39.130 0.00 0.00 0.00 3.69
3202 3389 9.205719 CTAGTGTCTAAAAACCTTTTCTCCTAC 57.794 37.037 0.00 0.00 0.00 3.18
3214 3401 8.890124 AAGGAACTCTTCTAGTGTCTAAAAAC 57.110 34.615 0.00 0.00 38.49 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.