Multiple sequence alignment - TraesCS2D01G116500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G116500 chr2D 100.000 8060 0 0 1 8060 65569860 65561801 0.000000e+00 14885.0
1 TraesCS2D01G116500 chr2D 95.592 726 28 3 1 722 532260239 532260964 0.000000e+00 1160.0
2 TraesCS2D01G116500 chr2D 95.574 723 28 3 6 724 72193843 72194565 0.000000e+00 1155.0
3 TraesCS2D01G116500 chr2D 91.758 182 12 3 7878 8056 29280361 29280180 4.830000e-62 250.0
4 TraesCS2D01G116500 chr2D 84.768 151 14 7 7882 8028 627037523 627037378 8.430000e-30 143.0
5 TraesCS2D01G116500 chr2A 94.646 2260 87 14 5388 7637 69210360 69212595 0.000000e+00 3472.0
6 TraesCS2D01G116500 chr2A 97.639 1398 31 2 2537 3933 69207637 69209033 0.000000e+00 2398.0
7 TraesCS2D01G116500 chr2A 90.831 1745 88 28 818 2539 69205861 69207556 0.000000e+00 2270.0
8 TraesCS2D01G116500 chr2A 97.793 1042 20 2 3996 5037 69209029 69210067 0.000000e+00 1794.0
9 TraesCS2D01G116500 chr2A 95.475 442 18 2 7621 8060 69212898 69213339 0.000000e+00 704.0
10 TraesCS2D01G116500 chr2A 94.389 303 7 2 5140 5435 69210065 69210364 2.650000e-124 457.0
11 TraesCS2D01G116500 chr2B 94.799 2019 76 14 2531 4546 105692704 105694696 0.000000e+00 3120.0
12 TraesCS2D01G116500 chr2B 95.541 1682 56 7 5140 6812 105695148 105696819 0.000000e+00 2673.0
13 TraesCS2D01G116500 chr2B 89.732 1305 83 16 725 2009 105690959 105692232 0.000000e+00 1620.0
14 TraesCS2D01G116500 chr2B 96.970 462 13 1 4576 5037 105694690 105695150 0.000000e+00 774.0
15 TraesCS2D01G116500 chr2B 87.540 313 22 11 2176 2474 105692393 105692702 5.990000e-91 346.0
16 TraesCS2D01G116500 chr3D 95.873 727 27 3 1 724 303965583 303964857 0.000000e+00 1173.0
17 TraesCS2D01G116500 chr3D 98.291 117 1 1 5028 5143 419583117 419583001 3.810000e-48 204.0
18 TraesCS2D01G116500 chr3D 82.781 151 17 6 5552 5694 476599441 476599292 8.490000e-25 126.0
19 TraesCS2D01G116500 chr7D 95.380 736 30 4 1 733 613153827 613153093 0.000000e+00 1168.0
20 TraesCS2D01G116500 chr7D 95.845 722 27 3 6 724 412243254 412242533 0.000000e+00 1164.0
21 TraesCS2D01G116500 chr7D 98.276 116 1 1 5035 5149 568753367 568753482 1.370000e-47 202.0
22 TraesCS2D01G116500 chr7D 84.516 155 19 5 7874 8025 110583485 110583637 1.810000e-31 148.0
23 TraesCS2D01G116500 chr7D 81.818 77 8 3 7094 7169 533909241 533909170 8.740000e-05 60.2
24 TraesCS2D01G116500 chr6D 95.467 728 30 3 1 725 429863287 429864014 0.000000e+00 1158.0
25 TraesCS2D01G116500 chr6D 95.317 726 30 4 1 723 13238959 13238235 0.000000e+00 1149.0
26 TraesCS2D01G116500 chr6D 83.871 155 18 7 7878 8028 462475222 462475373 3.030000e-29 141.0
27 TraesCS2D01G116500 chr5D 95.330 728 30 4 1 724 72484871 72484144 0.000000e+00 1153.0
28 TraesCS2D01G116500 chr5D 95.323 727 29 5 1 723 407068235 407068960 0.000000e+00 1149.0
29 TraesCS2D01G116500 chr1B 99.115 113 1 0 5034 5146 669891574 669891462 3.810000e-48 204.0
30 TraesCS2D01G116500 chr7B 96.748 123 0 3 5024 5142 523682096 523681974 1.370000e-47 202.0
31 TraesCS2D01G116500 chr3A 97.458 118 2 1 5025 5141 585501080 585500963 4.930000e-47 200.0
32 TraesCS2D01G116500 chr3A 83.974 156 15 8 7876 8025 575006584 575006735 3.030000e-29 141.0
33 TraesCS2D01G116500 chr3A 84.000 75 9 2 4918 4992 620468807 620468736 1.450000e-07 69.4
34 TraesCS2D01G116500 chr5B 96.667 120 3 1 5023 5142 294240151 294240033 1.770000e-46 198.0
35 TraesCS2D01G116500 chr5B 83.766 154 20 5 7875 8025 73860135 73859984 3.030000e-29 141.0
36 TraesCS2D01G116500 chr5B 80.978 184 26 9 7876 8055 526116375 526116197 3.920000e-28 137.0
37 TraesCS2D01G116500 chr1A 97.414 116 3 0 5034 5149 119717404 119717289 1.770000e-46 198.0
38 TraesCS2D01G116500 chr1D 95.238 126 3 3 5026 5150 73714971 73714848 6.380000e-46 196.0
39 TraesCS2D01G116500 chr4A 95.868 121 3 1 5022 5142 467233717 467233835 2.300000e-45 195.0
40 TraesCS2D01G116500 chr5A 86.111 180 24 1 7882 8060 631635183 631635004 8.250000e-45 193.0
41 TraesCS2D01G116500 chr5A 96.970 33 1 0 7100 7132 145662724 145662692 1.000000e-03 56.5
42 TraesCS2D01G116500 chr7A 83.784 74 7 3 7094 7167 613636623 613636555 1.880000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G116500 chr2D 65561801 65569860 8059 True 14885.000000 14885 100.000000 1 8060 1 chr2D.!!$R2 8059
1 TraesCS2D01G116500 chr2D 532260239 532260964 725 False 1160.000000 1160 95.592000 1 722 1 chr2D.!!$F2 721
2 TraesCS2D01G116500 chr2D 72193843 72194565 722 False 1155.000000 1155 95.574000 6 724 1 chr2D.!!$F1 718
3 TraesCS2D01G116500 chr2A 69205861 69213339 7478 False 1849.166667 3472 95.128833 818 8060 6 chr2A.!!$F1 7242
4 TraesCS2D01G116500 chr2B 105690959 105696819 5860 False 1706.600000 3120 92.916400 725 6812 5 chr2B.!!$F1 6087
5 TraesCS2D01G116500 chr3D 303964857 303965583 726 True 1173.000000 1173 95.873000 1 724 1 chr3D.!!$R1 723
6 TraesCS2D01G116500 chr7D 613153093 613153827 734 True 1168.000000 1168 95.380000 1 733 1 chr7D.!!$R3 732
7 TraesCS2D01G116500 chr7D 412242533 412243254 721 True 1164.000000 1164 95.845000 6 724 1 chr7D.!!$R1 718
8 TraesCS2D01G116500 chr6D 429863287 429864014 727 False 1158.000000 1158 95.467000 1 725 1 chr6D.!!$F1 724
9 TraesCS2D01G116500 chr6D 13238235 13238959 724 True 1149.000000 1149 95.317000 1 723 1 chr6D.!!$R1 722
10 TraesCS2D01G116500 chr5D 72484144 72484871 727 True 1153.000000 1153 95.330000 1 724 1 chr5D.!!$R1 723
11 TraesCS2D01G116500 chr5D 407068235 407068960 725 False 1149.000000 1149 95.323000 1 723 1 chr5D.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 802 0.386113 GAGCACTATCTGGTCGGGTC 59.614 60.000 0.00 0.00 37.64 4.46 F
1573 1605 0.098728 GGGTGATGGAAATGTTCGCG 59.901 55.000 0.00 0.00 0.00 5.87 F
1614 1651 0.243365 GGCGCATGTGATGGTTTTGA 59.757 50.000 10.83 0.00 0.00 2.69 F
2272 2340 1.077930 CTGCCCTGGTCCTGTCATG 60.078 63.158 0.00 0.00 0.00 3.07 F
2516 2597 1.143073 AGTTGACCTTTCCTTTCGGCT 59.857 47.619 0.00 0.00 0.00 5.52 F
3955 4124 1.202879 GCATGGAAACGATATCCCCCA 60.203 52.381 0.00 0.23 36.04 4.96 F
4048 4217 0.317799 TGTGCCAATGCCACATTGTC 59.682 50.000 16.67 6.92 36.33 3.18 F
5048 5218 0.460311 ATTGCTACTCCCTCCGTTCG 59.540 55.000 0.00 0.00 0.00 3.95 F
6006 6226 0.798776 CATGCACCGGTTTCTCTCAC 59.201 55.000 2.97 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 1694 1.008538 GCTAATTGGCCGCGAATGG 60.009 57.895 8.23 0.00 0.00 3.16 R
3437 3606 0.843984 ACACCCTTTGCCTGTGTACT 59.156 50.000 0.00 0.00 41.18 2.73 R
3522 3691 2.474359 CGAAGATTTGATAGCCTCTGCG 59.526 50.000 0.00 0.00 44.33 5.18 R
3940 4109 0.109913 GGGGTGGGGGATATCGTTTC 59.890 60.000 0.00 0.00 0.00 2.78 R
4031 4200 1.066787 CATGACAATGTGGCATTGGCA 60.067 47.619 26.25 26.25 45.54 4.92 R
5125 5295 0.172803 CTTGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30 R
5126 5296 0.886563 ACTTGTACTCCCTCCGTTCG 59.113 55.000 0.00 0.00 0.00 3.95 R
6877 7111 0.235665 AAACTGTGTTGCGCTCGATG 59.764 50.000 9.73 0.00 0.00 3.84 R
7970 8527 0.179076 ACTTTTGGGCTTGCTTGTGC 60.179 50.000 0.00 0.00 40.20 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.102052 TGTTTGGGTACGAGAACACTC 57.898 47.619 0.00 0.00 0.00 3.51
137 138 2.640316 AAGGAAGTTTTGCGGAGTCT 57.360 45.000 0.00 0.00 0.00 3.24
257 258 0.875059 CCGACTTTGTGGAGGCTTTC 59.125 55.000 0.00 0.00 0.00 2.62
306 307 7.318401 TCAACATATAAATAGAGGGGTAGGGT 58.682 38.462 0.00 0.00 0.00 4.34
388 390 7.184067 AGTTTATCCTCCGTCATAGTTTTCT 57.816 36.000 0.00 0.00 0.00 2.52
392 394 8.529424 TTATCCTCCGTCATAGTTTTCTTAGA 57.471 34.615 0.00 0.00 0.00 2.10
645 649 2.440409 ACGAGGGTACGTAGACAACAT 58.560 47.619 0.00 0.00 44.72 2.71
782 789 4.437587 GCCCAGCCCATGAGCACT 62.438 66.667 0.76 0.00 34.23 4.40
786 793 0.763652 CCAGCCCATGAGCACTATCT 59.236 55.000 0.76 0.00 34.23 1.98
795 802 0.386113 GAGCACTATCTGGTCGGGTC 59.614 60.000 0.00 0.00 37.64 4.46
799 806 1.455217 CTATCTGGTCGGGTCGGGT 60.455 63.158 0.00 0.00 0.00 5.28
800 807 1.453762 CTATCTGGTCGGGTCGGGTC 61.454 65.000 0.00 0.00 0.00 4.46
886 901 5.316987 AGCTTATGCCAAACTACACTCTTT 58.683 37.500 0.00 0.00 40.80 2.52
1069 1087 0.326048 CCTCCATCTCCTCCCACACT 60.326 60.000 0.00 0.00 0.00 3.55
1323 1341 0.169230 CCGTGAGTTCTCTGACCTCG 59.831 60.000 1.53 0.00 0.00 4.63
1336 1354 4.278310 TCTGACCTCGAAACATCCATCTA 58.722 43.478 0.00 0.00 0.00 1.98
1441 1459 0.994241 CGCGCTAGCTGTACGATCTG 60.994 60.000 13.93 0.00 42.32 2.90
1442 1460 0.308068 GCGCTAGCTGTACGATCTGA 59.692 55.000 13.93 0.00 41.01 3.27
1452 1470 0.100682 TACGATCTGAAGCTCACGGC 59.899 55.000 0.00 0.00 42.19 5.68
1493 1511 0.105039 GTCCCGCTCATGTTCTAGGG 59.895 60.000 0.00 0.49 40.16 3.53
1557 1581 5.075344 TCATGAAGGTTTAAGGGTTTAGGGT 59.925 40.000 0.00 0.00 0.00 4.34
1573 1605 0.098728 GGGTGATGGAAATGTTCGCG 59.901 55.000 0.00 0.00 0.00 5.87
1598 1634 1.078918 TGTCATGCTCTGGAAGGCG 60.079 57.895 0.00 0.00 33.58 5.52
1599 1635 2.124983 TCATGCTCTGGAAGGCGC 60.125 61.111 0.00 0.00 33.58 6.53
1607 1644 0.745486 TCTGGAAGGCGCATGTGATG 60.745 55.000 10.83 0.00 0.00 3.07
1613 1650 0.244450 AGGCGCATGTGATGGTTTTG 59.756 50.000 10.83 0.00 0.00 2.44
1614 1651 0.243365 GGCGCATGTGATGGTTTTGA 59.757 50.000 10.83 0.00 0.00 2.69
1643 1680 1.406539 CTGTGGTTTTCTGCTGTTGCT 59.593 47.619 0.00 0.00 40.48 3.91
1657 1694 1.405105 TGTTGCTGAGTGTTTTGAGGC 59.595 47.619 0.00 0.00 0.00 4.70
1701 1741 6.159575 TGGGACTTAGGGATGTGATTATTTGA 59.840 38.462 0.00 0.00 0.00 2.69
1726 1766 9.442047 GAATGGTTTAGAGATATGTATCTTGGG 57.558 37.037 4.18 0.00 42.79 4.12
1736 1776 8.319057 AGATATGTATCTTGGGTGACAACTTA 57.681 34.615 0.00 0.00 39.96 2.24
1755 1795 4.098807 ACTTATTTGGTGAGGCACGTTTTT 59.901 37.500 0.00 0.00 34.83 1.94
1776 1816 9.585099 GTTTTTGATGATGTGCTGGATTATTAA 57.415 29.630 0.00 0.00 0.00 1.40
1813 1853 3.715495 CAGTTGCTTTGTGGTGCATTTA 58.285 40.909 0.00 0.00 39.07 1.40
1901 1941 1.227943 TCTCCACCTGCTTGTGTGC 60.228 57.895 5.64 0.00 34.35 4.57
1922 1962 2.793790 CTCGTTTAGCTATGCTCTGCAG 59.206 50.000 7.63 7.63 43.65 4.41
1941 1981 3.847105 GCAGGTGTACGTTTAGTTTGCAC 60.847 47.826 0.00 0.00 0.00 4.57
1979 2020 5.603170 ATTGATTTTAGGGAGCATGGTTG 57.397 39.130 0.00 0.00 0.00 3.77
1999 2040 8.696410 TGGTTGTTCTTTTTATTGTTCTGTTC 57.304 30.769 0.00 0.00 0.00 3.18
2081 2122 4.891992 AGGTAGTGCAAACTACTCACAT 57.108 40.909 13.97 0.00 41.57 3.21
2092 2133 3.360867 ACTACTCACATAGCAGCTGAGT 58.639 45.455 20.43 16.76 45.27 3.41
2272 2340 1.077930 CTGCCCTGGTCCTGTCATG 60.078 63.158 0.00 0.00 0.00 3.07
2301 2369 3.260884 TGTTCCTGCTCTTCCGTTAATCT 59.739 43.478 0.00 0.00 0.00 2.40
2302 2370 3.802948 TCCTGCTCTTCCGTTAATCTC 57.197 47.619 0.00 0.00 0.00 2.75
2338 2406 8.926715 TGCTACATTCAACTTACTACTGTATG 57.073 34.615 0.00 0.00 0.00 2.39
2340 2408 9.367444 GCTACATTCAACTTACTACTGTATGTT 57.633 33.333 0.00 0.00 43.36 2.71
2516 2597 1.143073 AGTTGACCTTTCCTTTCGGCT 59.857 47.619 0.00 0.00 0.00 5.52
2636 2801 7.994425 TTTATGTTGGCTTTCTTCTGATACA 57.006 32.000 0.00 0.00 0.00 2.29
3226 3394 2.340337 CCCACTTACCCGAGTTTAACG 58.660 52.381 0.00 0.00 0.00 3.18
3522 3691 8.188139 TCTGAAACCAACACTTTTTCTATTGAC 58.812 33.333 0.00 0.00 31.68 3.18
3785 3954 7.908601 CCTTGCGTACTAAATCCTAATGAAAAC 59.091 37.037 0.00 0.00 0.00 2.43
3881 4050 7.577303 TCTAGGAAGCATTTGATAAGTGGAAT 58.423 34.615 0.00 0.00 0.00 3.01
3940 4109 4.818005 TGCTGACTTTCATATACTGCATGG 59.182 41.667 0.00 0.00 32.44 3.66
3949 4118 8.846943 TTTCATATACTGCATGGAAACGATAT 57.153 30.769 0.00 0.00 0.00 1.63
3952 4121 2.851195 ACTGCATGGAAACGATATCCC 58.149 47.619 0.00 0.00 36.04 3.85
3953 4122 2.154462 CTGCATGGAAACGATATCCCC 58.846 52.381 0.00 0.00 36.04 4.81
3955 4124 1.202879 GCATGGAAACGATATCCCCCA 60.203 52.381 0.00 0.23 36.04 4.96
3960 4129 1.358051 AAACGATATCCCCCACCCCC 61.358 60.000 0.00 0.00 0.00 5.40
3961 4130 2.207189 CGATATCCCCCACCCCCT 59.793 66.667 0.00 0.00 0.00 4.79
3962 4131 1.918800 CGATATCCCCCACCCCCTC 60.919 68.421 0.00 0.00 0.00 4.30
3963 4132 1.541620 GATATCCCCCACCCCCTCC 60.542 68.421 0.00 0.00 0.00 4.30
3964 4133 3.142715 ATATCCCCCACCCCCTCCC 62.143 68.421 0.00 0.00 0.00 4.30
3970 4139 3.189646 CCACCCCCTCCCCACAAA 61.190 66.667 0.00 0.00 0.00 2.83
3971 4140 2.784654 CCACCCCCTCCCCACAAAA 61.785 63.158 0.00 0.00 0.00 2.44
3972 4141 1.234529 CACCCCCTCCCCACAAAAA 59.765 57.895 0.00 0.00 0.00 1.94
4048 4217 0.317799 TGTGCCAATGCCACATTGTC 59.682 50.000 16.67 6.92 36.33 3.18
4200 4369 7.824289 TCCATTGTTACTAACTCCTTTGATCAG 59.176 37.037 0.00 0.00 0.00 2.90
4367 4537 3.924686 AGGTATGCTTACGTTTGTTCTCG 59.075 43.478 0.00 0.00 0.00 4.04
4434 4604 8.942338 TTAAAACTTCTCATATCGTAGCATGT 57.058 30.769 0.00 0.00 0.00 3.21
4572 4742 2.561569 AGTTCTGACCAACTTTGTCGG 58.438 47.619 0.00 0.00 32.34 4.79
4998 5168 1.271817 TGTGTTAGTGATGCATGGCCA 60.272 47.619 8.56 8.56 0.00 5.36
5043 5213 2.685388 GCAAGAAATTGCTACTCCCTCC 59.315 50.000 5.74 0.00 44.15 4.30
5044 5214 2.939103 CAAGAAATTGCTACTCCCTCCG 59.061 50.000 0.00 0.00 0.00 4.63
5045 5215 2.188817 AGAAATTGCTACTCCCTCCGT 58.811 47.619 0.00 0.00 0.00 4.69
5046 5216 2.572104 AGAAATTGCTACTCCCTCCGTT 59.428 45.455 0.00 0.00 0.00 4.44
5047 5217 2.693267 AATTGCTACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
5048 5218 0.460311 ATTGCTACTCCCTCCGTTCG 59.540 55.000 0.00 0.00 0.00 3.95
5049 5219 1.601419 TTGCTACTCCCTCCGTTCGG 61.601 60.000 4.74 4.74 0.00 4.30
5050 5220 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
5051 5221 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
5052 5222 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
5053 5223 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
5054 5224 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5055 5225 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5056 5226 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5057 5227 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5058 5228 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5059 5229 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5060 5230 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5061 5231 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
5062 5232 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
5063 5233 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
5064 5234 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
5065 5235 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
5066 5236 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
5067 5237 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
5068 5238 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
5069 5239 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
5070 5240 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
5071 5241 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
5072 5242 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
5073 5243 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
5074 5244 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
5075 5245 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
5076 5246 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
5077 5247 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
5078 5248 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
5079 5249 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
5080 5250 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
5081 5251 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
5082 5252 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
5083 5253 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
5084 5254 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
5085 5255 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
5086 5256 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
5087 5257 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
5088 5258 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
5112 5282 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
5113 5283 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
5114 5284 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
5115 5285 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
5116 5286 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
5117 5287 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
5118 5288 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
5119 5289 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
5120 5290 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
5121 5291 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
5122 5292 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
5123 5293 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
5124 5294 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
5125 5295 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
5126 5296 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
5127 5297 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
5128 5298 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
5129 5299 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
5130 5300 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
5131 5301 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
5132 5302 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
5133 5303 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
5134 5304 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5135 5305 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5136 5306 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5137 5307 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5138 5308 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5139 5309 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
5140 5310 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5141 5311 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
5167 5337 5.308237 AGTTAGCCAATTAGGGATGGACTAG 59.692 44.000 0.00 0.00 39.12 2.57
5174 5344 7.560368 CCAATTAGGGATGGACTAGATATGTC 58.440 42.308 0.00 0.00 39.12 3.06
5228 5405 7.575343 CGCTCCTAAGGTAGTAATCCTCATTAC 60.575 44.444 0.00 0.00 43.42 1.89
5288 5465 5.996219 TCTGTTAATTTCGTGTTGTGATGG 58.004 37.500 0.00 0.00 0.00 3.51
5360 5537 8.994170 AGTTTTGCTGTTGCTTTTTAAACTTTA 58.006 25.926 0.00 0.00 40.48 1.85
5361 5538 9.600646 GTTTTGCTGTTGCTTTTTAAACTTTAA 57.399 25.926 0.00 0.00 40.48 1.52
5435 5655 6.601332 AGAAGGTTTTGTTCTGTGAAGGATA 58.399 36.000 0.00 0.00 32.86 2.59
5719 5939 8.948631 TGCTACACTAATTTCTTCTAATCCAG 57.051 34.615 0.00 0.00 0.00 3.86
5740 5960 6.159575 TCCAGGACCCATTATGAATTGTCTTA 59.840 38.462 0.00 0.00 0.00 2.10
5894 6114 1.918957 ACCAGCAGCCTCTTATTTCCT 59.081 47.619 0.00 0.00 0.00 3.36
5939 6159 4.051922 CGACTGCATCCTGTTATTAGACC 58.948 47.826 0.00 0.00 0.00 3.85
5963 6183 8.557450 ACCTGTATTCCTACAATACTGGAATTT 58.443 33.333 25.42 9.74 45.19 1.82
6006 6226 0.798776 CATGCACCGGTTTCTCTCAC 59.201 55.000 2.97 0.00 0.00 3.51
6102 6322 9.569167 CTATCTCATGCTATTTATTGGCATTTG 57.431 33.333 0.00 0.00 43.62 2.32
6122 6342 9.410556 GCATTTGTGAGTTTGTACAGATATTTT 57.589 29.630 0.00 0.00 0.00 1.82
6173 6393 2.457366 AAGAGTTGGTAGCCAGTTCG 57.543 50.000 0.00 0.00 33.81 3.95
6437 6657 9.090103 ACTAGCCTATATGTTCTTGCACTATTA 57.910 33.333 0.00 0.00 0.00 0.98
6441 6661 7.281100 GCCTATATGTTCTTGCACTATTATCCC 59.719 40.741 0.00 0.00 0.00 3.85
6719 6946 6.302535 TGATACCCGAGGAGAACATTTTTA 57.697 37.500 0.00 0.00 0.00 1.52
6733 6960 2.296073 TTTTTAACTGGGCGGGATGT 57.704 45.000 0.00 0.00 0.00 3.06
6788 7015 4.974275 CCTCCGATAATAACGTGTACACTG 59.026 45.833 23.01 17.90 0.00 3.66
6790 7017 5.953183 TCCGATAATAACGTGTACACTGTT 58.047 37.500 27.05 27.05 34.40 3.16
6791 7018 5.801444 TCCGATAATAACGTGTACACTGTTG 59.199 40.000 29.59 17.32 33.04 3.33
6793 7020 6.089820 CCGATAATAACGTGTACACTGTTGTT 59.910 38.462 28.90 28.90 37.15 2.83
6795 7022 7.473104 CGATAATAACGTGTACACTGTTGTTTG 59.527 37.037 29.98 22.21 37.15 2.93
6796 7023 3.750639 AACGTGTACACTGTTGTTTGG 57.249 42.857 25.01 11.23 37.15 3.28
6797 7024 2.702261 ACGTGTACACTGTTGTTTGGT 58.298 42.857 23.01 7.88 37.15 3.67
6843 7077 1.135402 GGGAACACATGCCGTTCATTC 60.135 52.381 22.92 12.38 43.70 2.67
6844 7078 1.539388 GGAACACATGCCGTTCATTCA 59.461 47.619 22.92 0.00 43.70 2.57
6854 7088 3.700539 TGCCGTTCATTCATCAAATCCAT 59.299 39.130 0.00 0.00 0.00 3.41
6864 7098 3.118075 TCATCAAATCCATGGACGGCTAA 60.118 43.478 18.99 0.91 0.00 3.09
6877 7111 4.023536 TGGACGGCTAATTCTCAACAAAAC 60.024 41.667 0.00 0.00 0.00 2.43
6881 7115 4.788100 CGGCTAATTCTCAACAAAACATCG 59.212 41.667 0.00 0.00 0.00 3.84
6911 7145 7.579726 CAACACAGTTTGGATTTTGTTTTCAA 58.420 30.769 0.00 0.00 38.10 2.69
6926 7160 8.783833 TTTGTTTTCAAAGAATTCATGTTCCA 57.216 26.923 8.44 1.27 43.72 3.53
6957 7191 5.865085 AGTAATCTTAGTGTTTGACTGCCA 58.135 37.500 0.00 0.00 35.96 4.92
6960 7194 6.655078 AATCTTAGTGTTTGACTGCCAAAT 57.345 33.333 0.00 0.00 45.48 2.32
6961 7195 5.437289 TCTTAGTGTTTGACTGCCAAATG 57.563 39.130 0.00 0.00 45.48 2.32
6983 7217 5.254339 GCAGTAGCAATCATAGGCTTTTT 57.746 39.130 0.00 0.00 41.41 1.94
7029 7263 6.870895 ATACATGCTGTCTCATATCCAGAT 57.129 37.500 0.00 0.00 0.00 2.90
7044 7278 5.590530 ATCCAGATATGAGAGTTATCGCC 57.409 43.478 0.00 0.00 32.46 5.54
7050 7284 0.824109 TGAGAGTTATCGCCTGGTGG 59.176 55.000 7.51 0.00 0.00 4.61
7075 7309 6.008960 AGATTTCACAGGCTTCTTTGATCTT 58.991 36.000 0.00 0.00 28.62 2.40
7090 7324 9.466497 TTCTTTGATCTTTCTGCCTGTTAATAT 57.534 29.630 0.00 0.00 0.00 1.28
7107 7341 7.043565 TGTTAATATGTTACTTCCTCCGTTCC 58.956 38.462 0.00 0.00 0.00 3.62
7112 7346 4.721132 TGTTACTTCCTCCGTTCCAAAAT 58.279 39.130 0.00 0.00 0.00 1.82
7117 7351 4.760204 ACTTCCTCCGTTCCAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
7131 7365 6.262601 CAAAATACTTGACGTGGTTTGAGTT 58.737 36.000 0.00 0.00 34.88 3.01
7140 7374 2.096174 CGTGGTTTGAGTTTTGGAACGA 59.904 45.455 0.00 0.00 40.75 3.85
7141 7375 3.431856 GTGGTTTGAGTTTTGGAACGAC 58.568 45.455 0.00 0.00 40.75 4.34
7142 7376 2.096174 TGGTTTGAGTTTTGGAACGACG 59.904 45.455 0.00 0.00 40.75 5.12
7143 7377 2.352342 GGTTTGAGTTTTGGAACGACGA 59.648 45.455 0.00 0.00 40.75 4.20
7144 7378 3.545426 GGTTTGAGTTTTGGAACGACGAG 60.545 47.826 0.00 0.00 40.75 4.18
7145 7379 2.589798 TGAGTTTTGGAACGACGAGT 57.410 45.000 0.00 0.00 40.75 4.18
7146 7380 3.713858 TGAGTTTTGGAACGACGAGTA 57.286 42.857 0.00 0.00 40.75 2.59
7147 7381 4.247267 TGAGTTTTGGAACGACGAGTAT 57.753 40.909 0.00 0.00 40.75 2.12
7148 7382 4.624015 TGAGTTTTGGAACGACGAGTATT 58.376 39.130 0.00 0.00 40.75 1.89
7149 7383 5.051816 TGAGTTTTGGAACGACGAGTATTT 58.948 37.500 0.00 0.00 40.75 1.40
7150 7384 5.524646 TGAGTTTTGGAACGACGAGTATTTT 59.475 36.000 0.00 0.00 40.75 1.82
7151 7385 5.744490 AGTTTTGGAACGACGAGTATTTTG 58.256 37.500 0.00 0.00 40.75 2.44
7152 7386 5.524646 AGTTTTGGAACGACGAGTATTTTGA 59.475 36.000 0.00 0.00 40.75 2.69
7153 7387 5.987777 TTTGGAACGACGAGTATTTTGAA 57.012 34.783 0.00 0.00 0.00 2.69
7154 7388 5.987777 TTGGAACGACGAGTATTTTGAAA 57.012 34.783 0.00 0.00 0.00 2.69
7155 7389 5.333046 TGGAACGACGAGTATTTTGAAAC 57.667 39.130 0.00 0.00 0.00 2.78
7156 7390 4.809958 TGGAACGACGAGTATTTTGAAACA 59.190 37.500 0.00 0.00 0.00 2.83
7167 7401 8.195436 CGAGTATTTTGAAACAGAGGGAGTATA 58.805 37.037 0.00 0.00 0.00 1.47
7175 7409 9.434275 TTGAAACAGAGGGAGTATATCTTGATA 57.566 33.333 0.00 0.00 0.00 2.15
7199 7433 2.039818 ATGCAGAGAACAGGCTCATG 57.960 50.000 0.00 0.00 37.37 3.07
7283 7517 3.682592 ACCCCATAGCAGTCTAGTGTA 57.317 47.619 0.00 0.00 0.00 2.90
7290 7524 6.237901 CCATAGCAGTCTAGTGTAGAGAGAT 58.762 44.000 0.00 0.00 35.04 2.75
7368 7602 4.153330 GGCTCCCTCGTCCCCCTA 62.153 72.222 0.00 0.00 0.00 3.53
7378 7612 1.033574 CGTCCCCCTAAGCAGTCTAG 58.966 60.000 0.00 0.00 0.00 2.43
7406 7641 8.731781 TCGAGAGATAGGGGAAACCACTAACA 62.732 46.154 3.83 0.00 45.79 2.41
7450 7685 8.846943 TTGCTGTCTTCATTCTTATGTTTCTA 57.153 30.769 0.00 0.00 33.34 2.10
7479 7714 4.598257 CCGTGGTGGTGACATCTC 57.402 61.111 0.00 0.00 43.86 2.75
7486 7721 1.065854 GGTGGTGACATCTCAAGGGAG 60.066 57.143 0.00 0.00 46.14 4.30
7491 7726 2.167487 GTGACATCTCAAGGGAGGAGAC 59.833 54.545 0.00 0.00 43.65 3.36
7556 7792 3.078891 ACTCTTTGCTTCATTCCCCTC 57.921 47.619 0.00 0.00 0.00 4.30
7592 7828 0.680280 GGTCTACTCCTGGAGCACGA 60.680 60.000 23.43 13.82 32.04 4.35
7597 7833 0.328592 ACTCCTGGAGCACGAGTCTA 59.671 55.000 23.43 0.00 31.15 2.59
7739 8294 6.594788 TTTAGAAAGGGTATGTCTACGTGT 57.405 37.500 0.00 0.00 0.00 4.49
7793 8348 2.100605 CCTCCTGTGGCTCTACAAAC 57.899 55.000 0.00 0.00 0.00 2.93
7795 8350 1.625818 CTCCTGTGGCTCTACAAACCT 59.374 52.381 0.00 0.00 0.00 3.50
7796 8351 2.832129 CTCCTGTGGCTCTACAAACCTA 59.168 50.000 0.00 0.00 0.00 3.08
7797 8352 2.832129 TCCTGTGGCTCTACAAACCTAG 59.168 50.000 0.00 0.00 0.00 3.02
7823 8379 4.976116 GGTTAGTTCAACATGTGCAAGTTC 59.024 41.667 0.00 0.00 39.04 3.01
7846 8402 4.616381 CGTCATTTGCAATTTCATCAACGA 59.384 37.500 0.00 0.00 0.00 3.85
7861 8417 1.260561 CAACGAACACAAGGAGGAACG 59.739 52.381 0.00 0.00 0.00 3.95
7874 8430 0.396435 AGGAACGTCAACATGCAGGA 59.604 50.000 4.84 0.00 0.00 3.86
7893 8450 2.121009 GACTCTCGAATAGGCTTTCGC 58.879 52.381 19.83 8.04 46.14 4.70
7928 8485 2.185004 AAGCAACGGTTCATACAGCT 57.815 45.000 0.00 0.00 0.00 4.24
7936 8493 2.285220 CGGTTCATACAGCTCAAATCCG 59.715 50.000 0.00 0.00 0.00 4.18
7943 8500 3.340814 ACAGCTCAAATCCGAACATCT 57.659 42.857 0.00 0.00 0.00 2.90
7947 8504 3.937706 AGCTCAAATCCGAACATCTTCAG 59.062 43.478 0.00 0.00 0.00 3.02
7959 8516 2.223971 ACATCTTCAGACAAACGACGGT 60.224 45.455 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.367241 CCGGTGAATTTTGGAACCCTTT 59.633 45.455 0.00 0.00 0.00 3.11
15 16 0.039180 GACCCCCTTCCGGTGAATTT 59.961 55.000 0.00 0.00 32.27 1.82
32 33 4.871933 ACATTTTGGGAAACATCTGGAC 57.128 40.909 0.00 0.00 0.00 4.02
71 72 2.246091 TTCCCCTTTGGCCCAAATAG 57.754 50.000 9.81 4.42 32.70 1.73
257 258 0.107831 TGGGGTCGAAACTTGGAGTG 59.892 55.000 0.00 0.00 0.00 3.51
306 307 3.072330 TCTTGATGTGTCTTGGGTGCTAA 59.928 43.478 0.00 0.00 0.00 3.09
407 409 2.290260 TGGTGAAGAACAATCTCCGCAT 60.290 45.455 0.00 0.00 33.77 4.73
553 556 1.661821 CGATCCGTCCCGATCAAGC 60.662 63.158 0.00 0.00 38.91 4.01
612 616 1.134401 ACCCTCGTAGACCGTAATCGA 60.134 52.381 0.00 0.00 39.71 3.59
615 619 2.213499 CGTACCCTCGTAGACCGTAAT 58.787 52.381 0.00 0.00 37.94 1.89
645 649 1.757118 CATAGCAACGAGAGGGGAGAA 59.243 52.381 0.00 0.00 0.00 2.87
762 769 3.492353 GCTCATGGGCTGGGCCTA 61.492 66.667 11.30 4.73 46.40 3.93
773 780 1.269988 CCCGACCAGATAGTGCTCATG 60.270 57.143 0.00 0.00 0.00 3.07
774 781 1.043816 CCCGACCAGATAGTGCTCAT 58.956 55.000 0.00 0.00 0.00 2.90
781 788 1.453762 GACCCGACCCGACCAGATAG 61.454 65.000 0.00 0.00 0.00 2.08
782 789 1.454479 GACCCGACCCGACCAGATA 60.454 63.158 0.00 0.00 0.00 1.98
791 798 3.855503 AAAAAGCCCGACCCGACCC 62.856 63.158 0.00 0.00 0.00 4.46
793 800 1.574702 CTGAAAAAGCCCGACCCGAC 61.575 60.000 0.00 0.00 0.00 4.79
795 802 2.332654 CCTGAAAAAGCCCGACCCG 61.333 63.158 0.00 0.00 0.00 5.28
886 901 0.466543 AAGTCCACGGCACACTTACA 59.533 50.000 0.00 0.00 0.00 2.41
1009 1024 4.594123 TGTGAGTCTGGTTAATTCGTCA 57.406 40.909 0.00 0.00 0.00 4.35
1222 1240 1.001631 TCGAGATGGGGCAGGAGAA 59.998 57.895 0.00 0.00 0.00 2.87
1336 1354 1.406887 GCCGATGTGGTCACCATAAGT 60.407 52.381 0.00 0.00 41.21 2.24
1441 1459 2.202676 CTCGAGGCCGTGAGCTTC 60.203 66.667 13.35 0.00 43.94 3.86
1442 1460 3.764466 CCTCGAGGCCGTGAGCTT 61.764 66.667 20.67 0.00 43.05 3.74
1452 1470 4.760204 ACTAACAAAATGAAACCCTCGAGG 59.240 41.667 25.36 25.36 43.78 4.63
1527 1545 5.685728 ACCCTTAAACCTTCATGAGCTATC 58.314 41.667 0.00 0.00 0.00 2.08
1557 1581 1.731709 CACTCGCGAACATTTCCATCA 59.268 47.619 11.33 0.00 0.00 3.07
1573 1605 1.357258 CCAGAGCATGACACGCACTC 61.357 60.000 0.00 0.00 0.00 3.51
1580 1612 1.078918 CGCCTTCCAGAGCATGACA 60.079 57.895 0.00 0.00 0.00 3.58
1582 1614 2.124983 GCGCCTTCCAGAGCATGA 60.125 61.111 0.00 0.00 0.00 3.07
1584 1616 2.593978 ATGCGCCTTCCAGAGCAT 59.406 55.556 4.18 0.00 44.43 3.79
1598 1634 4.047822 TCGTTTTCAAAACCATCACATGC 58.952 39.130 7.44 0.00 0.00 4.06
1599 1635 4.681025 CCTCGTTTTCAAAACCATCACATG 59.319 41.667 7.44 0.00 0.00 3.21
1607 1644 2.459934 CACAGCCTCGTTTTCAAAACC 58.540 47.619 7.44 0.00 0.00 3.27
1613 1650 2.727777 GAAAACCACAGCCTCGTTTTC 58.272 47.619 8.40 8.40 44.54 2.29
1614 1651 2.099098 CAGAAAACCACAGCCTCGTTTT 59.901 45.455 0.00 0.00 41.20 2.43
1643 1680 1.879380 CGAATGGCCTCAAAACACTCA 59.121 47.619 3.32 0.00 0.00 3.41
1657 1694 1.008538 GCTAATTGGCCGCGAATGG 60.009 57.895 8.23 0.00 0.00 3.16
1701 1741 8.949421 ACCCAAGATACATATCTCTAAACCATT 58.051 33.333 1.89 0.00 41.96 3.16
1722 1762 4.537751 TCACCAAATAAGTTGTCACCCAA 58.462 39.130 0.00 0.00 35.23 4.12
1726 1766 3.568007 TGCCTCACCAAATAAGTTGTCAC 59.432 43.478 0.00 0.00 35.23 3.67
1736 1776 2.428890 TCAAAAACGTGCCTCACCAAAT 59.571 40.909 0.00 0.00 0.00 2.32
1755 1795 8.694581 TCAATTAATAATCCAGCACATCATCA 57.305 30.769 0.00 0.00 0.00 3.07
1776 1816 3.276857 CAACTGCATAGCCACTCTCAAT 58.723 45.455 0.00 0.00 0.00 2.57
1813 1853 6.272558 AGGTCCTGAAGTAAATCAAGTAAGGT 59.727 38.462 0.00 0.00 0.00 3.50
1890 1930 2.584166 CTAAACGAGCACACAAGCAG 57.416 50.000 0.00 0.00 36.85 4.24
1901 1941 2.793790 CTGCAGAGCATAGCTAAACGAG 59.206 50.000 8.42 0.00 39.88 4.18
1922 1962 3.556775 TCTGTGCAAACTAAACGTACACC 59.443 43.478 0.00 0.00 0.00 4.16
1941 1981 6.446781 AAATCAATAGTCATGTGGCTTCTG 57.553 37.500 0.00 0.00 0.00 3.02
1979 2020 9.237846 CAGAAGGAACAGAACAATAAAAAGAAC 57.762 33.333 0.00 0.00 0.00 3.01
1999 2040 3.439476 CAGAGCAACAAAGGATCAGAAGG 59.561 47.826 0.00 0.00 0.00 3.46
2081 2122 9.667107 AAATAAATGTAGTTAACTCAGCTGCTA 57.333 29.630 12.39 0.16 0.00 3.49
2140 2181 1.238439 ACACCGGCAATGAGAAGTTG 58.762 50.000 0.00 0.00 0.00 3.16
2242 2310 1.069823 CCAGGGCAGAGCATAGTACTG 59.930 57.143 5.39 0.00 35.14 2.74
2272 2340 2.614229 GGAAGAGCAGGAACAGAAGACC 60.614 54.545 0.00 0.00 0.00 3.85
2387 2468 4.844884 AGGCCAATACCTGTAAGAGAAAC 58.155 43.478 5.01 0.00 39.13 2.78
2546 2711 9.709495 TTTCTGAAAATGGTTGAATTTATCTGG 57.291 29.630 0.00 0.00 0.00 3.86
2616 2781 5.239306 CACTTGTATCAGAAGAAAGCCAACA 59.761 40.000 0.00 0.00 0.00 3.33
2725 2892 6.393171 TCAGATAGAAACATGTGTCAGACTG 58.607 40.000 18.32 19.61 0.00 3.51
3032 3199 4.588528 ACTGGCAAAAGGAAGCATTCTTAA 59.411 37.500 0.00 0.00 46.56 1.85
3437 3606 0.843984 ACACCCTTTGCCTGTGTACT 59.156 50.000 0.00 0.00 41.18 2.73
3522 3691 2.474359 CGAAGATTTGATAGCCTCTGCG 59.526 50.000 0.00 0.00 44.33 5.18
3881 4050 1.702182 ATGACACCACACATTGCCAA 58.298 45.000 0.00 0.00 0.00 4.52
3940 4109 0.109913 GGGGTGGGGGATATCGTTTC 59.890 60.000 0.00 0.00 0.00 2.78
3953 4122 2.319410 TTTTTGTGGGGAGGGGGTGG 62.319 60.000 0.00 0.00 0.00 4.61
3955 4124 3.791749 TTTTTGTGGGGAGGGGGT 58.208 55.556 0.00 0.00 0.00 4.95
4031 4200 1.066787 CATGACAATGTGGCATTGGCA 60.067 47.619 26.25 26.25 45.54 4.92
4033 4202 1.741055 GCCATGACAATGTGGCATTGG 60.741 52.381 21.19 10.06 45.54 3.16
4048 4217 3.369366 GGTTTTGGGTTCCATTAGCCATG 60.369 47.826 0.00 0.00 44.53 3.66
4200 4369 5.195001 TCATTACAAAGCAACTTGGGAAC 57.805 39.130 0.00 0.00 0.00 3.62
4270 4440 7.577303 AGGACTTGCATTATCTTCTCCATTAA 58.423 34.615 0.00 0.00 0.00 1.40
4434 4604 8.887393 ACTTTAATCTAAAAGGGTAGGACTTCA 58.113 33.333 1.84 0.00 40.16 3.02
4695 4865 9.814899 ACTGAAATACAAATCAAAATCACAACA 57.185 25.926 0.00 0.00 0.00 3.33
4719 4889 3.111484 TCTTGGCCCAAAAAGGAAAACT 58.889 40.909 0.00 0.00 41.22 2.66
4998 5168 1.550130 TTTCGGCGGAGGTCCAGAAT 61.550 55.000 7.21 0.00 35.14 2.40
5037 5207 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5038 5208 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5039 5209 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5040 5210 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
5041 5211 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
5042 5212 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
5043 5213 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
5044 5214 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
5045 5215 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
5046 5216 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
5047 5217 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
5048 5218 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
5049 5219 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
5050 5220 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
5051 5221 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
5052 5222 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
5053 5223 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
5054 5224 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
5055 5225 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
5056 5226 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
5057 5227 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
5058 5228 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
5059 5229 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
5060 5230 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
5061 5231 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
5062 5232 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
5086 5256 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
5087 5257 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
5088 5258 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
5089 5259 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
5090 5260 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
5091 5261 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
5092 5262 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
5093 5263 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
5094 5264 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
5095 5265 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
5096 5266 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
5097 5267 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
5098 5268 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
5099 5269 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
5100 5270 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
5101 5271 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
5102 5272 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
5103 5273 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
5104 5274 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
5105 5275 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
5106 5276 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
5107 5277 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
5108 5278 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
5109 5279 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
5110 5280 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
5111 5281 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
5112 5282 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
5113 5283 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5114 5284 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5115 5285 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5116 5286 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5117 5287 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5118 5288 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5119 5289 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5120 5290 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5121 5291 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
5122 5292 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
5123 5293 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
5124 5294 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
5125 5295 0.172803 CTTGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
5126 5296 0.886563 ACTTGTACTCCCTCCGTTCG 59.113 55.000 0.00 0.00 0.00 3.95
5127 5297 3.675502 GCTAACTTGTACTCCCTCCGTTC 60.676 52.174 0.00 0.00 0.00 3.95
5128 5298 2.233186 GCTAACTTGTACTCCCTCCGTT 59.767 50.000 0.00 0.00 0.00 4.44
5129 5299 1.823610 GCTAACTTGTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
5130 5300 1.136500 GGCTAACTTGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
5131 5301 2.185387 TGGCTAACTTGTACTCCCTCC 58.815 52.381 0.00 0.00 0.00 4.30
5132 5302 3.975168 TTGGCTAACTTGTACTCCCTC 57.025 47.619 0.00 0.00 0.00 4.30
5133 5303 4.929146 AATTGGCTAACTTGTACTCCCT 57.071 40.909 0.00 0.00 0.00 4.20
5134 5304 5.123936 CCTAATTGGCTAACTTGTACTCCC 58.876 45.833 0.00 0.00 0.00 4.30
5135 5305 5.104652 TCCCTAATTGGCTAACTTGTACTCC 60.105 44.000 0.00 0.00 0.00 3.85
5136 5306 5.985911 TCCCTAATTGGCTAACTTGTACTC 58.014 41.667 0.00 0.00 0.00 2.59
5137 5307 6.357367 CATCCCTAATTGGCTAACTTGTACT 58.643 40.000 0.00 0.00 0.00 2.73
5138 5308 5.531287 CCATCCCTAATTGGCTAACTTGTAC 59.469 44.000 0.00 0.00 0.00 2.90
5139 5309 5.430417 TCCATCCCTAATTGGCTAACTTGTA 59.570 40.000 0.00 0.00 32.80 2.41
5140 5310 4.229582 TCCATCCCTAATTGGCTAACTTGT 59.770 41.667 0.00 0.00 32.80 3.16
5141 5311 4.580580 GTCCATCCCTAATTGGCTAACTTG 59.419 45.833 0.00 0.00 32.80 3.16
5167 5337 2.205074 CAACGAGCAGTGGGACATATC 58.795 52.381 0.00 0.00 44.52 1.63
5228 5405 3.623906 ACATCACTCTCCTGGATGTTG 57.376 47.619 0.00 1.19 46.93 3.33
5288 5465 6.862209 TGAAAATGGTTATTATGAGTGGCAC 58.138 36.000 10.29 10.29 0.00 5.01
5360 5537 4.218417 AGATGCAACGGTTGAAGCTTTATT 59.782 37.500 24.20 0.00 28.23 1.40
5361 5538 3.758554 AGATGCAACGGTTGAAGCTTTAT 59.241 39.130 24.20 0.00 28.23 1.40
5362 5539 3.146066 AGATGCAACGGTTGAAGCTTTA 58.854 40.909 24.20 0.00 28.23 1.85
5719 5939 7.147976 GCAATAAGACAATTCATAATGGGTCC 58.852 38.462 0.00 0.00 30.51 4.46
5963 6183 6.097554 TGTTCTTGCCTTTTTGGTAATGAAGA 59.902 34.615 0.00 0.00 39.66 2.87
6006 6226 3.064545 GTGAGGAAGAGCCATTTTCATCG 59.935 47.826 0.00 0.00 37.03 3.84
6122 6342 6.147864 CAGATTTCCTGGAGTTGTGAAAAA 57.852 37.500 0.00 0.00 39.23 1.94
6123 6343 5.772825 CAGATTTCCTGGAGTTGTGAAAA 57.227 39.130 0.00 0.00 39.23 2.29
6173 6393 5.121768 AGGCAAATGTCGATTGTGTAAGTAC 59.878 40.000 0.00 0.00 0.00 2.73
6226 6446 3.507162 TGGTTTCTTCTGATCAGGCAA 57.493 42.857 22.42 9.57 0.00 4.52
6441 6661 5.067273 TGTACCCAGTGGTTTTTCATACTG 58.933 41.667 8.74 0.00 44.75 2.74
6719 6946 1.077501 CATCACATCCCGCCCAGTT 60.078 57.895 0.00 0.00 0.00 3.16
6733 6960 2.857483 ACCGTGTCAAACCAATCATCA 58.143 42.857 0.00 0.00 0.00 3.07
6788 7015 5.790593 TGTCTCCATCTAGTACCAAACAAC 58.209 41.667 0.00 0.00 0.00 3.32
6790 7017 6.440647 AGAATGTCTCCATCTAGTACCAAACA 59.559 38.462 0.00 0.00 0.00 2.83
6791 7018 6.879400 AGAATGTCTCCATCTAGTACCAAAC 58.121 40.000 0.00 0.00 0.00 2.93
6793 7020 7.496346 AAAGAATGTCTCCATCTAGTACCAA 57.504 36.000 0.00 0.00 0.00 3.67
6795 7022 7.281100 CCAAAAAGAATGTCTCCATCTAGTACC 59.719 40.741 0.00 0.00 0.00 3.34
6796 7023 7.824779 ACCAAAAAGAATGTCTCCATCTAGTAC 59.175 37.037 0.00 0.00 0.00 2.73
6797 7024 7.824289 CACCAAAAAGAATGTCTCCATCTAGTA 59.176 37.037 0.00 0.00 0.00 1.82
6812 7043 3.431486 GCATGTGTTCCCACCAAAAAGAA 60.431 43.478 0.00 0.00 41.09 2.52
6813 7044 2.102252 GCATGTGTTCCCACCAAAAAGA 59.898 45.455 0.00 0.00 41.09 2.52
6835 7069 5.276270 GTCCATGGATTTGATGAATGAACG 58.724 41.667 19.62 0.00 0.00 3.95
6843 7077 1.683943 AGCCGTCCATGGATTTGATG 58.316 50.000 19.62 0.00 0.00 3.07
6844 7078 3.576078 TTAGCCGTCCATGGATTTGAT 57.424 42.857 19.62 10.71 0.00 2.57
6854 7088 3.410631 TTGTTGAGAATTAGCCGTCCA 57.589 42.857 0.00 0.00 0.00 4.02
6864 7098 3.667960 GCGCTCGATGTTTTGTTGAGAAT 60.668 43.478 0.00 0.00 30.09 2.40
6877 7111 0.235665 AAACTGTGTTGCGCTCGATG 59.764 50.000 9.73 0.00 0.00 3.84
6881 7115 0.593128 ATCCAAACTGTGTTGCGCTC 59.407 50.000 9.73 2.14 0.00 5.03
6911 7145 3.320541 TGCCGTTTGGAACATGAATTCTT 59.679 39.130 7.05 0.00 39.30 2.52
6925 7159 5.607119 ACACTAAGATTACTTGCCGTTTG 57.393 39.130 0.00 0.00 37.53 2.93
6926 7160 6.261381 TCAAACACTAAGATTACTTGCCGTTT 59.739 34.615 0.00 0.00 37.53 3.60
6961 7195 4.907879 AAAAGCCTATGATTGCTACTGC 57.092 40.909 0.00 0.00 36.66 4.40
7029 7263 2.628178 CCACCAGGCGATAACTCTCATA 59.372 50.000 0.00 0.00 0.00 2.15
7033 7267 1.115467 CTCCACCAGGCGATAACTCT 58.885 55.000 0.00 0.00 33.74 3.24
7034 7268 1.112113 TCTCCACCAGGCGATAACTC 58.888 55.000 0.00 0.00 33.74 3.01
7035 7269 1.794714 ATCTCCACCAGGCGATAACT 58.205 50.000 0.00 0.00 37.58 2.24
7044 7278 1.004044 AGCCTGTGAAATCTCCACCAG 59.996 52.381 0.00 0.00 33.80 4.00
7050 7284 5.647225 AGATCAAAGAAGCCTGTGAAATCTC 59.353 40.000 0.00 0.00 39.90 2.75
7075 7309 7.630082 AGGAAGTAACATATTAACAGGCAGAA 58.370 34.615 0.00 0.00 0.00 3.02
7090 7324 3.842007 TTTGGAACGGAGGAAGTAACA 57.158 42.857 0.00 0.00 0.00 2.41
7107 7341 5.816919 ACTCAAACCACGTCAAGTATTTTG 58.183 37.500 0.00 0.00 36.14 2.44
7112 7346 4.095185 CCAAAACTCAAACCACGTCAAGTA 59.905 41.667 0.00 0.00 0.00 2.24
7117 7351 3.431856 GTTCCAAAACTCAAACCACGTC 58.568 45.455 0.00 0.00 32.36 4.34
7131 7365 5.987777 TTCAAAATACTCGTCGTTCCAAA 57.012 34.783 0.00 0.00 0.00 3.28
7140 7374 5.221661 ACTCCCTCTGTTTCAAAATACTCGT 60.222 40.000 0.00 0.00 0.00 4.18
7141 7375 5.238583 ACTCCCTCTGTTTCAAAATACTCG 58.761 41.667 0.00 0.00 0.00 4.18
7146 7380 9.401058 CAAGATATACTCCCTCTGTTTCAAAAT 57.599 33.333 0.00 0.00 0.00 1.82
7147 7381 8.602424 TCAAGATATACTCCCTCTGTTTCAAAA 58.398 33.333 0.00 0.00 0.00 2.44
7148 7382 8.146053 TCAAGATATACTCCCTCTGTTTCAAA 57.854 34.615 0.00 0.00 0.00 2.69
7149 7383 7.733773 TCAAGATATACTCCCTCTGTTTCAA 57.266 36.000 0.00 0.00 0.00 2.69
7150 7384 7.921041 ATCAAGATATACTCCCTCTGTTTCA 57.079 36.000 0.00 0.00 0.00 2.69
7167 7401 9.064706 CCTGTTCTCTGCATTTATTATCAAGAT 57.935 33.333 0.00 0.00 0.00 2.40
7175 7409 4.592942 TGAGCCTGTTCTCTGCATTTATT 58.407 39.130 0.00 0.00 34.29 1.40
7183 7417 3.883830 ACTACATGAGCCTGTTCTCTG 57.116 47.619 0.00 0.00 34.29 3.35
7267 7501 6.710295 ACATCTCTCTACACTAGACTGCTATG 59.290 42.308 0.00 0.00 0.00 2.23
7368 7602 3.060736 TCTCTCGACACTAGACTGCTT 57.939 47.619 0.00 0.00 0.00 3.91
7378 7612 2.101082 GGTTTCCCCTATCTCTCGACAC 59.899 54.545 0.00 0.00 0.00 3.67
7406 7641 8.353423 ACAGCAAAACTAATCACCAGATATTT 57.647 30.769 0.00 0.00 33.08 1.40
7450 7685 2.360350 CCACGGTGGCAATGAGCT 60.360 61.111 15.29 0.00 44.79 4.09
7479 7714 1.219393 GAAGCCGTCTCCTCCCTTG 59.781 63.158 0.00 0.00 0.00 3.61
7491 7726 7.085116 AGAGAATTGTATTCTATACGAAGCCG 58.915 38.462 2.12 0.00 42.50 5.52
7533 7769 4.998051 AGGGGAATGAAGCAAAGAGTTTA 58.002 39.130 0.00 0.00 0.00 2.01
7556 7792 1.663702 CCGCTACGAATAAGCCGGG 60.664 63.158 2.18 0.00 36.60 5.73
7592 7828 5.234543 GCACGAGAAGACAAGTTTTTAGACT 59.765 40.000 0.00 0.00 0.00 3.24
7597 7833 4.965119 AAGCACGAGAAGACAAGTTTTT 57.035 36.364 0.00 0.00 0.00 1.94
7793 8348 5.178797 CACATGTTGAACTAACCTCCTAGG 58.821 45.833 0.82 0.82 42.49 3.02
7795 8350 4.041075 TGCACATGTTGAACTAACCTCCTA 59.959 41.667 0.00 0.00 38.55 2.94
7796 8351 3.181445 TGCACATGTTGAACTAACCTCCT 60.181 43.478 0.00 0.00 38.55 3.69
7797 8352 3.146066 TGCACATGTTGAACTAACCTCC 58.854 45.455 0.00 0.00 38.55 4.30
7823 8379 4.616381 TCGTTGATGAAATTGCAAATGACG 59.384 37.500 1.71 5.73 0.00 4.35
7846 8402 2.285977 GTTGACGTTCCTCCTTGTGTT 58.714 47.619 0.00 0.00 0.00 3.32
7861 8417 1.067565 TCGAGAGTCCTGCATGTTGAC 60.068 52.381 0.00 0.00 0.00 3.18
7919 8476 4.200838 TGTTCGGATTTGAGCTGTATGA 57.799 40.909 0.00 0.00 0.00 2.15
7926 8483 3.935203 TCTGAAGATGTTCGGATTTGAGC 59.065 43.478 9.97 0.00 42.22 4.26
7936 8493 3.120991 CCGTCGTTTGTCTGAAGATGTTC 60.121 47.826 0.00 0.00 0.00 3.18
7943 8500 1.292061 CCAACCGTCGTTTGTCTGAA 58.708 50.000 1.70 0.00 0.00 3.02
7947 8504 2.900167 GCCCCAACCGTCGTTTGTC 61.900 63.158 1.70 0.00 0.00 3.18
7959 8516 2.521465 CTTGTGCTGTGGCCCCAA 60.521 61.111 0.00 0.00 37.74 4.12
7970 8527 0.179076 ACTTTTGGGCTTGCTTGTGC 60.179 50.000 0.00 0.00 40.20 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.